FF:11533-120A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005540 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005540 | ||
|accession_numbers=CAGE;DRX008107;DRR008979;DRZ000404;DRZ001789;DRZ011754;DRZ013139 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036990;DRR041356;DRZ006998 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000305,UBERON:0004121,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0000158 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000349,CL:0000255,CL:0002536 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000009 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.46!287.03!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.11!337.06!OSR1;;chr10:8096772..8096787,+!p2@GATA3!2.00!114.68!GATA3;;chr10:8096631..8096660,+!p1@GATA3!1.94!103.32!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.92!82.13!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.87!88.03!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.69!78.64!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.68!47.40!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.41!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!178.69!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.48!29.05!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.47!28.18!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.47!28.18!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.46!40.19!HEY1;;chr4:188916918..188916942,+!p1@ZFP42!1.45!26.87!ZFP42;;chr20:55204351..55204377,+!p1@TFAP2C!1.44!33.20!TFAP2C;;chr8:102504690..102504704,+!p3@GRHL2!1.43!25.99!GRHL2;;chr2:46524897..46524911,+!p2@EPAS1!1.42!69.68!EPAS1;;chr17:7493405..7493419,-!p1@SOX15!1.35!21.63!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.33!408.49!SNAI2;;chr6:10415484..10415508,-!p3@TFAP2A!1.32!20.10!TFAP2A;;chr5:153857800..153857812,-!p2@HAND1!1.30!18.79!HAND1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.35!HAND2;;chr20:39317868..39317884,-!p1@MAFB!1.21!177.81!MAFB;;chr3:111314230..111314241,-!p2@ZBED2!1.20!14.85!ZBED2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.54!HIF3A;;chr10:8100691..8100732,+!p5@GATA3!1.16!13.54!GATA3;;chr6:10412576..10412599,-!p5@TFAP2A!1.15!13.11!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.24!HMGA2;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.67!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.14!KDM5D;;chr5:3595977..3595999,+!p1@IRX1!1.08!10.92!IRX1;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.49!IRX2;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.49!SOX11;;chr11:113930425..113930471,+!p1@ZBTB16!1.05!14.85!ZBTB16;;chr16:73093174..73093209,-!p3@ZFHX3!1.05!13.76!ZFHX3;;chr3:12330560..12330579,+!p1@PPARG!1.00!10.27!PPARG;;chr16:67881588..67881612,-!p2@CENPT!0.99!12.01!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.99!10.49!GATA3;;chr5:3595961..3595975,+!p3@IRX1!0.97!8.30!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.08!IRX1;;chr20:42295745..42295765,+!p1@MYBL2!0.95!132.81!MYBL2;;chr17:41623692..41623715,-!p1@ETV4!0.95!34.51!ETV4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.86!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!0.94!41.29!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.94!7.65!TFAP2A;;chr2:19558327..19558334,-!p2@OSR1!0.94!7.65!OSR1;;chr2:16080659..16080685,+!p1@MYCN!0.93!7.43!MYCN;;chr19:926055..926068,+!p2@ARID3A!0.92!16.38!ARID3A;;chr2:231084820..231084836,-!p5@SP110!0.91!8.30!SP110;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.13!NCOA7;;chr2:46524878..46524891,+!p3@EPAS1!0.89!12.23!EPAS1;;chr8:80680024..80680046,-!p2@HEY1!0.89!7.65!HEY1;;chr6:126240356..126240379,+!p7@NCOA7!0.88!8.08!NCOA7;;chr4:299227..299272,-!p1@ZNF732!0.87!6.33!ZNF732;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.33!FOXL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.85!56.79!PPP1R13L;;chr9:110251836..110251887,-!p4@KLF4!0.85!8.30!KLF4;;chr1:38512457..38512474,-!p1@POU3F1!0.84!6.55!POU3F1;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.61!MSX2;;chr15:96869511..96869525,+!p16@NR2F2!0.82!6.33!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.61!CREB3L1;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.77!TBX18;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.46!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.46!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.46!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.80!SOX15;;chr12:66218598..66218645,+!p2@HMGA2!0.78!24.90!HMGA2;;chr22:24093154..24093183,-!p2@ZNF70!0.78!5.02!ZNF70;;chr4:149366111..149366128,-!p7@NR3C2!0.78!5.02!NR3C2;;chr7:138666053..138666146,-!p1@KIAA1549!0.77!21.84!KIAA1549;;chr9:110252035..110252057,-!p1@KLF4!0.76!84.10!KLF4;;chr19:926001..926046,+!p1@ARID3A!0.76!18.13!ARID3A;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.64!PCBP4;;chrX:56258844..56258882,+!p1@KLF8!0.76!6.77!KLF8;;chr9:110250697..110250738,-!p2@KLF4!0.76!5.68!KLF4;;chr8:55370487..55370503,+!p1@SOX17!0.76!4.81!SOX17;;chr1:209979411..209979433,-!p2@IRF6!0.76!4.81!IRF6;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.29!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!0.75!7.86!ZBTB16;;chr6:10415263..10415274,-!p8@TFAP2A!0.75!4.59!TFAP2A;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr2:46524537..46524553,+!p1@EPAS1!0.73!488.43!EPAS1;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.21!KLF5;;chr19:17356189..17356221,-!p2@NR2F6!0.73!7.65!NR2F6;;chr14:75988771..75988826,+!p1@BATF!0.73!6.12!BATF;;chr8:102504932..102504952,+!p4@GRHL2!0.73!4.37!GRHL2;;chr3:52001448..52001478,-!p2@PCBP4!0.72!67.06!PCBP4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.72!5.46!L3MBTL4;;chr3:24536253..24536328,-!p1@THRB!0.71!8.30!THRB;;chr17:41622925..41622976,-!p3@ETV4!0.71!6.55!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!0.71!4.15!HOXC4;;chr12:66218255..66218304,+!p3@HMGA2!0.69!11.58!HMGA2;;chr1:151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| |expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.46!287.03!HAND1;;chr2:19558373..19558392,-!p1@OSR1!2.11!337.06!OSR1;;chr10:8096772..8096787,+!p2@GATA3!2.00!114.68!GATA3;;chr10:8096631..8096660,+!p1@GATA3!1.94!103.32!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.92!82.13!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.87!88.03!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.69!78.64!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.68!47.40!GRHL2;;chr1:209979467..209979494,-!p1@IRF6!1.57!40.41!IRF6;;chr8:49833948..49833973,-!p2@SNAI2!1.48!178.69!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!1.48!29.05!IRX2;;chr8:102504979..102505010,+!p2@GRHL2!1.47!28.18!GRHL2;;chr4:174450089..174450153,-!p2@HAND2!1.47!28.18!HAND2;;chr8:80679993..80680011,-!p1@HEY1!1.46!40.19!HEY1;;chr4:188916918..188916942,+!p1@ZFP42!1.45!26.87!ZFP42;;chr20:55204351..55204377,+!p1@TFAP2C!1.44!33.20!TFAP2C;;chr8:102504690..102504704,+!p3@GRHL2!1.43!25.99!GRHL2;;chr2:46524897..46524911,+!p2@EPAS1!1.42!69.68!EPAS1;;chr17:7493405..7493419,-!p1@SOX15!1.35!21.63!SOX15;;chr8:49833978..49833996,-!p1@SNAI2!1.33!408.49!SNAI2;;chr6:10415484..10415508,-!p3@TFAP2A!1.32!20.10!TFAP2A;;chr5:153857800..153857812,-!p2@HAND1!1.30!18.79!HAND1;;chr4:174451370..174451387,-!p1@HAND2!1.29!18.35!HAND2;;chr20:39317868..39317884,-!p1@MAFB!1.21!177.81!MAFB;;chr3:111314230..111314241,-!p2@ZBED2!1.20!14.85!ZBED2;;chr19:46801639..46801699,+!p1@HIF3A!1.16!13.54!HIF3A;;chr10:8100691..8100732,+!p5@GATA3!1.16!13.54!GATA3;;chr6:10412576..10412599,-!p5@TFAP2A!1.15!13.11!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.12!114.24!HMGA2;;chr6:10412392..10412409,-!p4@TFAP2A!1.08!12.67!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.14!KDM5D;;chr5:3595977..3595999,+!p1@IRX1!1.08!10.92!IRX1;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.49!IRX2;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.49!SOX11;;chr11:113930425..113930471,+!p1@ZBTB16!1.05!14.85!ZBTB16;;chr16:73093174..73093209,-!p3@ZFHX3!1.05!13.76!ZFHX3;;chr3:12330560..12330579,+!p1@PPARG!1.00!10.27!PPARG;;chr16:67881588..67881612,-!p2@CENPT!0.99!12.01!CENPT;;chr10:8095593..8095625,+!p3@GATA3!0.99!10.49!GATA3;;chr5:3595961..3595975,+!p3@IRX1!0.97!8.30!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.08!IRX1;;chr20:42295745..42295765,+!p1@MYBL2!0.95!132.81!MYBL2;;chr17:41623692..41623715,-!p1@ETV4!0.95!34.51!ETV4;;chr5:153857819..153857824,-!p3@HAND1!0.95!7.86!HAND1;;chr11:46299199..46299233,+!p1@CREB3L1!0.94!41.29!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.94!7.65!TFAP2A;;chr2:19558327..19558334,-!p2@OSR1!0.94!7.65!OSR1;;chr2:16080659..16080685,+!p1@MYCN!0.93!7.43!MYCN;;chr19:926055..926068,+!p2@ARID3A!0.92!16.38!ARID3A;;chr2:231084820..231084836,-!p5@SP110!0.91!8.30!SP110;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.13!NCOA7;;chr2:46524878..46524891,+!p3@EPAS1!0.89!12.23!EPAS1;;chr8:80680024..80680046,-!p2@HEY1!0.89!7.65!HEY1;;chr6:126240356..126240379,+!p7@NCOA7!0.88!8.08!NCOA7;;chr4:299227..299272,-!p1@ZNF732!0.87!6.33!ZNF732;;chr16:86612320..86612394,+!p1@FOXL1!0.87!6.33!FOXL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.85!56.79!PPP1R13L;;chr9:110251836..110251887,-!p4@KLF4!0.85!8.30!KLF4;;chr1:38512457..38512474,-!p1@POU3F1!0.84!6.55!POU3F1;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.61!MSX2;;chr15:96869511..96869525,+!p16@NR2F2!0.82!6.33!NR2F2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.61!CREB3L1;;chr6:85473156..85473210,-!p2@TBX18!0.81!6.77!TBX18;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.46!ZNF668;;chr19:46800289..46800327,+!p2@HIF3A!0.81!5.46!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.46!OVOL2;;chr17:7492684..7492778,-!p2@SOX15!0.80!11.80!SOX15;;chr12:66218598..66218645,+!p2@HMGA2!0.78!24.90!HMGA2;;chr22:24093154..24093183,-!p2@ZNF70!0.78!5.02!ZNF70;;chr4:149366111..149366128,-!p7@NR3C2!0.78!5.02!NR3C2;;chr7:138666053..138666146,-!p1@KIAA1549!0.77!21.84!KIAA1549;;chr9:110252035..110252057,-!p1@KLF4!0.76!84.10!KLF4;;chr19:926001..926046,+!p1@ARID3A!0.76!18.13!ARID3A;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.64!PCBP4;;chrX:56258844..56258882,+!p1@KLF8!0.76!6.77!KLF8;;chr9:110250697..110250738,-!p2@KLF4!0.76!5.68!KLF4;;chr8:55370487..55370503,+!p1@SOX17!0.76!4.81!SOX17;;chr1:209979411..209979433,-!p2@IRF6!0.76!4.81!IRF6;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.29!BCL11A;;chr11:113930291..113930339,+!p2@ZBTB16!0.75!7.86!ZBTB16;;chr6:10415263..10415274,-!p8@TFAP2A!0.75!4.59!TFAP2A;;chr20:42295713..42295738,+!p2@MYBL2!0.74!29.71!MYBL2;;chr2:46524537..46524553,+!p1@EPAS1!0.73!488.43!EPAS1;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.21!KLF5;;chr19:17356189..17356221,-!p2@NR2F6!0.73!7.65!NR2F6;;chr14:75988771..75988826,+!p1@BATF!0.73!6.12!BATF;;chr8:102504932..102504952,+!p4@GRHL2!0.73!4.37!GRHL2;;chr3:52001448..52001478,-!p2@PCBP4!0.72!67.06!PCBP4;;chr18:6414884..6414942,-!p1@L3MBTL4!0.72!5.46!L3MBTL4;;chr3:24536253..24536328,-!p1@THRB!0.71!8.30!THRB;;chr17:41622925..41622976,-!p3@ETV4!0.71!6.55!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!0.71!4.15!HOXC4;;chr12:66218255..66218304,+!p3@HMGA2!0.69!11.58!HMGA2;;chr1:151032860..151032918,+!p1@MLLT11!0.68!52.21!MLLT11;;chr12:124873357..124873401,-!p1@NCOR2!0.67!49.15!NCOR2;;chr3:71630980..71631110,-!p3@FOXP1!0.67!14.42!FOXP1;;chr20:18038486..18038520,-!p2@OVOL2!0.67!3.71!OVOL2;;chr4:149363494..149363543,-!p1@NR3C2!0.65!3.50!NR3C2;;chrX:56258900..56258917,+!p4@KLF8!0.65!3.50!KLF8;;chr11:125034640..125034655,+!p1@PKNOX2!0.65!3.50!PKNOX2;;chr19:22193731..22193751,-!p1@ZNF208!0.65!3.50!ZNF208;;chr2:60778035..60778060,-!p4@BCL11A!0.64!4.15!BCL11A;;chr15:96869255..96869291,+!p6@NR2F2!0.63!6.55!NR2F2;;chr3:52001396..52001425,-!p4@PCBP4!0.63!6.33!PCBP4;;chr1:151032922..151032951,+!p2@MLLT11!0.63!5.90!MLLT11;;chr1:6479968..6479986,-!p1@HES2!0.63!3.28!HES2;;chr17:45928521..45928539,-!p1@SP6!0.63!3.28!SP6;;chr17:46132044..46132080,+!p4@NFE2L1!0.63!3.28!NFE2L1;;chr10:8097295..8097320,+!p6@GATA3!0.63!3.28!GATA3;;chr6:31126291..31126399,+!p1@TCF19!0.62!35.82!TCF19;;chr2:60780753..60780800,-!p1@BCL11A!0.62!18.35!BCL11A;;chr15:96873861..96873872,+!p9@NR2F2!0.61!7.21!NR2F2;;chr6:85474299..85474324,-!p1@TBX18!0.61!6.12!TBX18;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.61!3.06!ZNF676;;chr3:24536332..24536358,-!p2@THRB!0.61!3.06!THRB;;chrY:21906623..21906637,-!p3@KDM5D!0.61!3.06!KDM5D;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.30!PPARG;;chr1:59249732..59249749,-!p2@JUN!0.59!42.60!JUN;;chr17:41622765..41622821,-!p2@ETV4!0.59!4.81!ETV4;;chr17:70117153..70117174,+!p1@SOX9!0.58!34.95!SOX9;;chr15:96869292..96869320,+!p15@NR2F2!0.58!4.37!NR2F2;;chr4:149363475..149363492,-!p2@NR3C2!0.58!2.84!NR3C2;;chr20:55205825..55205847,+!p2@TFAP2C!0.58!2.84!TFAP2C;;chrY:2803415..2803468,+!p1@ZFY!0.58!2.84!ZFY;;chr1:164528410..164528428,+!p1@PBX1!0.56!24.47!PBX1;;chr5:176738887..176738934,-!p1@MXD3!0.56!21.84!MXD3;;chr13:74708504..74708549,-!p1@KLF12!0.56!14.42!KLF12;;chr9:117150254..117150271,-!p1@AKNA!0.56!8.52!AKNA;;chr7:35293685..35293718,-!p1@TBX20!0.56!2.62!TBX20;;chr11:125034605..125034636,+!p2@PKNOX2!0.56!2.62!PKNOX2;;chr2:101436564..101436647,+!p1@NPAS2!0.55!65.10!NPAS2;;chr10:77161504..77161530,-!p1@ZNF503!0.55!43.03!ZNF503;;chr17:41623009..41623053,-!p4@ETV4!0.55!4.59!ETV4;;chr12:66218378..66218401,+!p6@HMGA2!0.55!4.37!HMGA2;;chr1:8483878..8483907,-!p4@RERE!0.54!11.80!RERE;;chr16:29817789..29817838,+!p2@MAZ!0.53!41.29!MAZ;;chr12:54447599..54447630,+!p3@HOXC4!0.53!3.06!HOXC4;;chr11:47236584..47236679,+!p1@DDB2!0.52!32.77!DDB2;;chr19:22235279..22235301,+!p1@ZNF257!0.52!5.02!ZNF257;;chr22:42229246..42229270,+!p2@SREBF2!0.50!35.82!SREBF2;;chr2:166326200..166326216,+!p1@CSRNP3!0.50!3.50!CSRNP3;;chr9:16870659..16870675,-!p2@BNC2!0.50!2.84!BNC2;;chr2:46524865..46524870,+!p9@EPAS1!0.50!2.62!EPAS1;;chr10:8097321..8097348,+!p4@GATA3!0.50!2.18!GATA3;;chr19:46806868..46806883,+!p3@HIF3A!0.50!2.18!HIF3A;;chr6:10419768..10419819,-!p6@TFAP2A!0.50!2.18!TFAP2A;;chr12:2986275..2986363,-!p1@FOXM1!0.49!27.52!FOXM1;;chr3:128206762..128206781,-!p2@GATA2!0.49!17.04!GATA2;;chr5:72744594..72744609,-!p1@FOXD1!0.49!12.23!FOXD1;;chr2:25475120..25475176,-!p2@DNMT3A!0.49!3.06!DNMT3A;;chr6:144329384..144329405,-!p1@PLAGL1!0.48!31.24!PLAGL1;;chr16:29818160..29818188,+!p6@MAZ!0.48!12.23!MAZ;;chr8:102217679..102217719,-!p2@ZNF706!0.48!8.96!ZNF706;;chr11:12696002..12696022,+!p2@TEAD1!0.48!6.12!TEAD1;;chr12:66218003..66218018,+!p9@HMGA2!0.48!2.62!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.48!2.62!ETV4;;chr12:77459306..77459365,-!p1@E2F7!0.47!32.98!E2F7;;chr17:46621937..46621966,-!p2@HOXB2!0.47!6.55!HOXB2;;chr19:20188776..20188826,+!p1@ZNF90!0.47!6.55!ZNF90;;chr15:96874244..96874259,+!p5@NR2F2!0.47!5.90!NR2F2;;chr3:12329397..12329433,+!p2@PPARG!0.47!5.46!PPARG;;chr16:73092791..73092831,-!p4@ZFHX3!0.47!4.15!ZFHX3;;chr9:16870710..16870763,-!p1@BNC2!0.47!3.93!BNC2;;chr2:46612334..46612349,+!p6@EPAS1!0.47!2.84!EPAS1;;chr11:12696071..12696086,+!p3@TEAD1!0.47!2.84!TEAD1;;chr12:54422217..54422239,+!p3@HOXC6!0.47!1.97!HOXC6;;chr5:174151612..174151633,+!p2@MSX2!0.47!1.97!MSX2;;chr6:10412640..10412655,-!p14@TFAP2A!0.47!1.97!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!0.47!1.97!ELF3;;chr16:67881647..67881663,-!p3@CENPT!0.47!1.97!CENPT;;chr16:73093210..73093223,-!p13@ZFHX3!0.47!1.97!ZFHX3;;chr16:29817841..29817865,+!p1@MAZ!0.46!56.14!MAZ;;chr14:62162258..62162269,+!p2@HIF1A!0.46!24.90!HIF1A;;chrX:129244454..129244488,-!p1@ELF4!0.46!18.35!ELF4;;chr19:24097675..24097699,+!p1@ZNF726!0.46!8.08!ZNF726;;chr1:164528445..164528459,+!p2@PBX1!0.46!7.65!PBX1;;chr16:86600426..86600441,+!p1@FOXC2!0.46!5.90!FOXC2;;chr20:32274150..32274166,-!p2@E2F1!0.46!4.15!E2F1;;chr3:42947600..42947680,+!p1@ZNF662!0.46!3.06!ZNF662;;chr3:71631151..71631194,-!p15@FOXP1!0.46!2.18!FOXP1;;chr1:59249707..59249727,-!p1@JUN!0.45!108.57!JUN;;chr17:61920280..61920343,-!p2@SMARCD2!0.45!24.47!SMARCD2;;chr7:28448965..28448994,+!p2@CREB5!0.45!8.30!CREB5;;chr1:8484314..8484348,-!p7@RERE!0.45!6.33!RERE;;chr7:42276787..42276815,-!p1@GLI3!0.45!6.12!GLI3;;chr15:74833584..74833626,+!p1@ARID3B!0.45!5.24!ARID3B;;chr2:43453734..43453751,-!p1@ZFP36L2!0.44!269.56!ZFP36L2;;chr20:32274179..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002536;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000305;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004871 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Amniotic%2520Epithelial%2520Cells%252c%2520donor1.CNhs11341.11533-120A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11533-120A3 | |id=FF:11533-120A3 | ||
|is_a=EFO:0002091;;FF:0000009 | |is_a=EFO:0002091;;FF:0000009 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11341 | |||
|library_id_phase_based=2:CNhs11341 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11533 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TTAGGC.11533 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11533 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TTAGGC.11533 | |||
|name=Amniotic Epithelial Cells, donor1 | |name=Amniotic Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11341,LSID769,release014,COMPLETED | |profile_hcage=CNhs11341,LSID769,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.042902318515433,0,0,0.160286591790396,0,0.111872582931559,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0302443114532445,0,0,0,0,0,0,0,0,0.0186872974025986,0,0,0,0.085804637030866,0,0,0.085804637030866,-0.0969923612426051,0,0,-0.011538990182231,0,0,0,0,0,0,0,0,0.157421329304417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0408241686039905,-0.168295084180436,0,0.085804637030866,0.042902318515433,0.085804637030866,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0176629292702524,0,0,0,0,0.0448483689442466,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC7105 | |rna_catalog_number=SC7105 | ||
| Line 57: | Line 81: | ||
|rna_tube_id=120A3 | |rna_tube_id=120A3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0669 | |sample_cell_catalog=lot:0669 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 105: | ||
|top_motifs=GCM1,2:1.82721620593;ZNF148:1.36547302249;XCPE1{core}:1.336865768;SNAI1..3:1.26624739917;NKX2-1,4:1.25704616413;HOX{A5,B5}:1.22582847846;TEAD1:1.15812608824;TP53:1.15625112198;TBX4,5:1.1541796687;GFI1:1.1359877764;NKX2-3_NKX2-5:1.01689564011;ZEB1:1.00505927739;ZIC1..3:0.957552072278;TFAP2{A,C}:0.948619912332;ZNF384:0.925691808507;HAND1,2:0.861514270594;FOXM1:0.743144353293;GLI1..3:0.719412061374;EP300:0.68916980936;NKX2-2,8:0.683777615475;ONECUT1,2:0.676511276321;KLF4:0.673943529323;FOXL1:0.662207024544;MAZ:0.655607812739;PBX1:0.650516539476;TFCP2:0.645010713937;PAX5:0.63150436364;PPARG:0.59649404608;SP1:0.570353749836;NFY{A,B,C}:0.565012709596;E2F1..5:0.539652054824;TFDP1:0.520128436727;POU3F1..4:0.443165771597;RORA:0.435048368348;EN1,2:0.407291973118;FOS_FOS{B,L1}_JUN{B,D}:0.374493607021;HOX{A4,D4}:0.369982382363;SOX17:0.368048017653;LEF1_TCF7_TCF7L1,2:0.362149413759;EBF1:0.361891561537;TBP:0.35000326178;ZNF238:0.339987934416;POU2F1..3:0.328285195877;IKZF1:0.327523029634;AR:0.325909553999;BACH2:0.305371947568;ADNP_IRX_SIX_ZHX:0.303239704588;NR3C1:0.295908183796;RXRA_VDR{dimer}:0.24947086462;SOX{8,9,10}:0.239581622346;STAT5{A,B}:0.225513197941;GZF1:0.196640587689;TLX1..3_NFIC{dimer}:0.194034865288;HOXA9_MEIS1:0.1900320515;HMX1:0.183622311353;UFEwm:0.178300185754;GATA6:0.175784768321;HIC1:0.170991690484;JUN:0.145567489564;CDC5L:0.139001267459;GTF2A1,2:0.138199398176;HLF:0.116367300927;PAX8:0.110164856508;MYOD1:0.107021646752;TFAP2B:0.094879675512;HOX{A6,A7,B6,B7}:0.0578844453003;FOSL2:0.0425326535358;SOX2:0.0409034499463;GTF2I:0.0325174803018;DBP:-0.011511626495;TFAP4:-0.0173641071497;MYB:-0.0173816270206;LHX3,4:-0.01948257441;RXR{A,B,G}:-0.0230650897861;POU6F1:-0.023244067772;FOX{I1,J2}:-0.0240121430474;OCT4_SOX2{dimer}:-0.0417510866823;ZNF143:-0.0455601160477;TEF:-0.0597606749877;NKX3-2:-0.0621994603031;bHLH_family:-0.0724644546456;FOXA2:-0.0735432075445;HNF1A:-0.0870968320607;MED-1{core}:-0.0944306717498;NR6A1:-0.110242631628;RREB1:-0.113833124474;SPZ1:-0.114717569508;MTF1:-0.116646352485;HSF1,2:-0.121758384273;PITX1..3:-0.125968633706;NR1H4:-0.126490528037;POU1F1:-0.132396329426;ESR1:-0.14794445119;SOX5:-0.150250329338;FOXQ1:-0.151018600575;PAX4:-0.158240737629;HIF1A:-0.172902559613;ZNF423:-0.183320522192;PAX6:-0.185851531063;NHLH1,2:-0.192182529773;NFE2L2:-0.195568043577;NFE2:-0.196948499624;ESRRA:-0.232104152494;EVI1:-0.24580516045;SRF:-0.258144013097;HES1:-0.259761755436;MTE{core}:-0.270289789663;ARID5B:-0.271260797418;PAX2:-0.299627961196;ELK1,4_GABP{A,B1}:-0.302969002732;MYBL2:-0.317238115896;NFKB1_REL_RELA:-0.325293795022;NANOG:-0.330079923196;HNF4A_NR2F1,2:-0.33101977581;VSX1,2:-0.33982209489;STAT1,3:-0.340855165544;MZF1:-0.346636218567;ALX1:-0.362518823967;TOPORS:-0.363052756636;T:-0.372141342859;FOXO1,3,4:-0.377658275747;NFIL3:-0.377871335213;CRX:-0.394724811599;GFI1B:-0.397473501412;MEF2{A,B,C,D}:-0.406098091801;XBP1:-0.411063331964;RFX1:-0.413122635991;NR5A1,2:-0.413418287348;ZBTB6:-0.41703100652;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.429764797035;ATF6:-0.430420524282;NRF1:-0.452041646262;TLX2:-0.458762491654;CEBPA,B_DDIT3:-0.484524501981;ETS1,2:-0.486714371991;AIRE:-0.49511111091;BREu{core}:-0.497761170197;NFATC1..3:-0.500075950702;ELF1,2,4:-0.500460390718;ATF2:-0.512075707163;PDX1:-0.512254566021;PAX1,9:-0.525428477271;FOXN1:-0.52750838484;SMAD1..7,9:-0.547725311123;YY1:-0.554313501587;ALX4:-0.565923560781;PRRX1,2:-0.571332268327;PATZ1:-0.581365280424;RUNX1..3:-0.590776145122;CUX2:-0.621538442249;HMGA1,2:-0.626058507227;PAX3,7:-0.636063083177;SPIB:-0.644532140444;SPI1:-0.648199195284;FOXP3:-0.65542585077;EGR1..3:-0.665035685004;ATF4:-0.708028006681;LMO2:-0.716699211216;FOX{F1,F2,J1}:-0.73741605183;PRDM1:-0.752402483982;ZFP161:-0.764841832752;BPTF:-0.769950533344;TAL1_TCF{3,4,12}:-0.77233223005;FOXP1:-0.775495853033;REST:-0.785823500392;MYFfamily:-0.817165911573;HBP1_HMGB_SSRP1_UBTF:-0.821923720531;CREB1:-0.826108389899;GATA4:-0.858214228897;NFIX:-0.864315552621;NFE2L1:-0.866470514587;IRF7:-0.88395524209;ATF5_CREB3:-0.923678206428;FOX{D1,D2}:-0.931617369006;STAT2,4,6:-0.988060146959;IRF1,2:-1.02354237475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03870001236;SREBF1,2:-1.07550286878;RBPJ:-1.08213184188;NANOG{mouse}:-1.10781535495;CDX1,2,4:-1.14312961634;DMAP1_NCOR{1,2}_SMARC:-1.15452551554;TGIF1:-1.15747018378;RFX2..5_RFXANK_RFXAP:-1.16355760211;POU5F1:-1.24306939758;NKX3-1:-1.24755781393;AHR_ARNT_ARNT2:-1.25938776137;IKZF2:-1.2615546707;MAFB:-1.2681511697;FOXD3:-1.39034077857;ZBTB16:-1.5617640549;NKX6-1,2:-1.84087671813 | |top_motifs=GCM1,2:1.82721620593;ZNF148:1.36547302249;XCPE1{core}:1.336865768;SNAI1..3:1.26624739917;NKX2-1,4:1.25704616413;HOX{A5,B5}:1.22582847846;TEAD1:1.15812608824;TP53:1.15625112198;TBX4,5:1.1541796687;GFI1:1.1359877764;NKX2-3_NKX2-5:1.01689564011;ZEB1:1.00505927739;ZIC1..3:0.957552072278;TFAP2{A,C}:0.948619912332;ZNF384:0.925691808507;HAND1,2:0.861514270594;FOXM1:0.743144353293;GLI1..3:0.719412061374;EP300:0.68916980936;NKX2-2,8:0.683777615475;ONECUT1,2:0.676511276321;KLF4:0.673943529323;FOXL1:0.662207024544;MAZ:0.655607812739;PBX1:0.650516539476;TFCP2:0.645010713937;PAX5:0.63150436364;PPARG:0.59649404608;SP1:0.570353749836;NFY{A,B,C}:0.565012709596;E2F1..5:0.539652054824;TFDP1:0.520128436727;POU3F1..4:0.443165771597;RORA:0.435048368348;EN1,2:0.407291973118;FOS_FOS{B,L1}_JUN{B,D}:0.374493607021;HOX{A4,D4}:0.369982382363;SOX17:0.368048017653;LEF1_TCF7_TCF7L1,2:0.362149413759;EBF1:0.361891561537;TBP:0.35000326178;ZNF238:0.339987934416;POU2F1..3:0.328285195877;IKZF1:0.327523029634;AR:0.325909553999;BACH2:0.305371947568;ADNP_IRX_SIX_ZHX:0.303239704588;NR3C1:0.295908183796;RXRA_VDR{dimer}:0.24947086462;SOX{8,9,10}:0.239581622346;STAT5{A,B}:0.225513197941;GZF1:0.196640587689;TLX1..3_NFIC{dimer}:0.194034865288;HOXA9_MEIS1:0.1900320515;HMX1:0.183622311353;UFEwm:0.178300185754;GATA6:0.175784768321;HIC1:0.170991690484;JUN:0.145567489564;CDC5L:0.139001267459;GTF2A1,2:0.138199398176;HLF:0.116367300927;PAX8:0.110164856508;MYOD1:0.107021646752;TFAP2B:0.094879675512;HOX{A6,A7,B6,B7}:0.0578844453003;FOSL2:0.0425326535358;SOX2:0.0409034499463;GTF2I:0.0325174803018;DBP:-0.011511626495;TFAP4:-0.0173641071497;MYB:-0.0173816270206;LHX3,4:-0.01948257441;RXR{A,B,G}:-0.0230650897861;POU6F1:-0.023244067772;FOX{I1,J2}:-0.0240121430474;OCT4_SOX2{dimer}:-0.0417510866823;ZNF143:-0.0455601160477;TEF:-0.0597606749877;NKX3-2:-0.0621994603031;bHLH_family:-0.0724644546456;FOXA2:-0.0735432075445;HNF1A:-0.0870968320607;MED-1{core}:-0.0944306717498;NR6A1:-0.110242631628;RREB1:-0.113833124474;SPZ1:-0.114717569508;MTF1:-0.116646352485;HSF1,2:-0.121758384273;PITX1..3:-0.125968633706;NR1H4:-0.126490528037;POU1F1:-0.132396329426;ESR1:-0.14794445119;SOX5:-0.150250329338;FOXQ1:-0.151018600575;PAX4:-0.158240737629;HIF1A:-0.172902559613;ZNF423:-0.183320522192;PAX6:-0.185851531063;NHLH1,2:-0.192182529773;NFE2L2:-0.195568043577;NFE2:-0.196948499624;ESRRA:-0.232104152494;EVI1:-0.24580516045;SRF:-0.258144013097;HES1:-0.259761755436;MTE{core}:-0.270289789663;ARID5B:-0.271260797418;PAX2:-0.299627961196;ELK1,4_GABP{A,B1}:-0.302969002732;MYBL2:-0.317238115896;NFKB1_REL_RELA:-0.325293795022;NANOG:-0.330079923196;HNF4A_NR2F1,2:-0.33101977581;VSX1,2:-0.33982209489;STAT1,3:-0.340855165544;MZF1:-0.346636218567;ALX1:-0.362518823967;TOPORS:-0.363052756636;T:-0.372141342859;FOXO1,3,4:-0.377658275747;NFIL3:-0.377871335213;CRX:-0.394724811599;GFI1B:-0.397473501412;MEF2{A,B,C,D}:-0.406098091801;XBP1:-0.411063331964;RFX1:-0.413122635991;NR5A1,2:-0.413418287348;ZBTB6:-0.41703100652;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.429764797035;ATF6:-0.430420524282;NRF1:-0.452041646262;TLX2:-0.458762491654;CEBPA,B_DDIT3:-0.484524501981;ETS1,2:-0.486714371991;AIRE:-0.49511111091;BREu{core}:-0.497761170197;NFATC1..3:-0.500075950702;ELF1,2,4:-0.500460390718;ATF2:-0.512075707163;PDX1:-0.512254566021;PAX1,9:-0.525428477271;FOXN1:-0.52750838484;SMAD1..7,9:-0.547725311123;YY1:-0.554313501587;ALX4:-0.565923560781;PRRX1,2:-0.571332268327;PATZ1:-0.581365280424;RUNX1..3:-0.590776145122;CUX2:-0.621538442249;HMGA1,2:-0.626058507227;PAX3,7:-0.636063083177;SPIB:-0.644532140444;SPI1:-0.648199195284;FOXP3:-0.65542585077;EGR1..3:-0.665035685004;ATF4:-0.708028006681;LMO2:-0.716699211216;FOX{F1,F2,J1}:-0.73741605183;PRDM1:-0.752402483982;ZFP161:-0.764841832752;BPTF:-0.769950533344;TAL1_TCF{3,4,12}:-0.77233223005;FOXP1:-0.775495853033;REST:-0.785823500392;MYFfamily:-0.817165911573;HBP1_HMGB_SSRP1_UBTF:-0.821923720531;CREB1:-0.826108389899;GATA4:-0.858214228897;NFIX:-0.864315552621;NFE2L1:-0.866470514587;IRF7:-0.88395524209;ATF5_CREB3:-0.923678206428;FOX{D1,D2}:-0.931617369006;STAT2,4,6:-0.988060146959;IRF1,2:-1.02354237475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03870001236;SREBF1,2:-1.07550286878;RBPJ:-1.08213184188;NANOG{mouse}:-1.10781535495;CDX1,2,4:-1.14312961634;DMAP1_NCOR{1,2}_SMARC:-1.15452551554;TGIF1:-1.15747018378;RFX2..5_RFXANK_RFXAP:-1.16355760211;POU5F1:-1.24306939758;NKX3-1:-1.24755781393;AHR_ARNT_ARNT2:-1.25938776137;IKZF2:-1.2615546707;MAFB:-1.2681511697;FOXD3:-1.39034077857;ZBTB16:-1.5617640549;NKX6-1,2:-1.84087671813 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11533-120A3;search_select_hide=table117:FF:11533-120A3 | |||
}} | }} | ||
Latest revision as of 18:07, 4 June 2020
| Name: | Amniotic Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11341 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11341
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11341
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.366 |
| 10 | 10 | 0.584 |
| 100 | 100 | 0.806 |
| 101 | 101 | 0.506 |
| 102 | 102 | 0.996 |
| 103 | 103 | 0.17 |
| 104 | 104 | 0.881 |
| 105 | 105 | 0.0895 |
| 106 | 106 | 0.0472 |
| 107 | 107 | 0.051 |
| 108 | 108 | 0.379 |
| 109 | 109 | 0.0497 |
| 11 | 11 | 0.633 |
| 110 | 110 | 0.0958 |
| 111 | 111 | 0.827 |
| 112 | 112 | 0.723 |
| 113 | 113 | 9.44878e-5 |
| 114 | 114 | 0.875 |
| 115 | 115 | 0.361 |
| 116 | 116 | 0.883 |
| 117 | 117 | 0.31 |
| 118 | 118 | 0.257 |
| 119 | 119 | 0.413 |
| 12 | 12 | 0.711 |
| 120 | 120 | 0.346 |
| 121 | 121 | 0.16 |
| 122 | 122 | 0.227 |
| 123 | 123 | 0.169 |
| 124 | 124 | 0.182 |
| 125 | 125 | 0.308 |
| 126 | 126 | 0.149 |
| 127 | 127 | 0.561 |
| 128 | 128 | 0.672 |
| 129 | 129 | 0.172 |
| 13 | 13 | 0.277 |
| 130 | 130 | 0.604 |
| 131 | 131 | 0.0225 |
| 132 | 132 | 0.411 |
| 133 | 133 | 0.486 |
| 134 | 134 | 0.0914 |
| 135 | 135 | 0.533 |
| 136 | 136 | 0.118 |
| 137 | 137 | 0.12 |
| 138 | 138 | 0.275 |
| 139 | 139 | 0.153 |
| 14 | 14 | 0.985 |
| 140 | 140 | 0.631 |
| 141 | 141 | 0.6 |
| 142 | 142 | 0.558 |
| 143 | 143 | 0.734 |
| 144 | 144 | 0.944 |
| 145 | 145 | 0.681 |
| 146 | 146 | 0.0466 |
| 147 | 147 | 0.18 |
| 148 | 148 | 0.121 |
| 149 | 149 | 0.129 |
| 15 | 15 | 0.974 |
| 150 | 150 | 0.141 |
| 151 | 151 | 0.326 |
| 152 | 152 | 0.0636 |
| 153 | 153 | 0.136 |
| 154 | 154 | 0.444 |
| 155 | 155 | 0.2 |
| 156 | 156 | 0.245 |
| 157 | 157 | 0.62 |
| 158 | 158 | 0.413 |
| 159 | 159 | 0.451 |
| 16 | 16 | 0.193 |
| 160 | 160 | 0.0701 |
| 161 | 161 | 0.213 |
| 162 | 162 | 0.197 |
| 163 | 163 | 0.475 |
| 164 | 164 | 0.949 |
| 165 | 165 | 0.808 |
| 166 | 166 | 0.15 |
| 167 | 167 | 0.221 |
| 168 | 168 | 0.533 |
| 169 | 169 | 0.0599 |
| 17 | 17 | 0.144 |
| 18 | 18 | 0.36 |
| 19 | 19 | 0.522 |
| 2 | 2 | 0.0802 |
| 20 | 20 | 0.892 |
| 21 | 21 | 0.361 |
| 22 | 22 | 0.142 |
| 23 | 23 | 0.134 |
| 24 | 24 | 0.844 |
| 25 | 25 | 0.736 |
| 26 | 26 | 0.412 |
| 27 | 27 | 0.463 |
| 28 | 28 | 0.853 |
| 29 | 29 | 0.766 |
| 3 | 3 | 0.989 |
| 30 | 30 | 0.107 |
| 31 | 31 | 0.819 |
| 32 | 32 | 0.13 |
| 33 | 33 | 0.113 |
| 34 | 34 | 0.515 |
| 35 | 35 | 0.0391 |
| 36 | 36 | 0.183 |
| 37 | 37 | 0.963 |
| 38 | 38 | 0.725 |
| 39 | 39 | 0.156 |
| 4 | 4 | 0.513 |
| 40 | 40 | 0.0461 |
| 41 | 41 | 0.776 |
| 42 | 42 | 0.901 |
| 43 | 43 | 0.309 |
| 44 | 44 | 0.921 |
| 45 | 45 | 0.102 |
| 46 | 46 | 0.777 |
| 47 | 47 | 0.736 |
| 48 | 48 | 0.183 |
| 49 | 49 | 0.289 |
| 5 | 5 | 0.996 |
| 50 | 50 | 0.363 |
| 51 | 51 | 0.399 |
| 52 | 52 | 0.259 |
| 53 | 53 | 0.652 |
| 54 | 54 | 0.563 |
| 55 | 55 | 0.224 |
| 56 | 56 | 0.339 |
| 57 | 57 | 0.502 |
| 58 | 58 | 0.653 |
| 59 | 59 | 0.174 |
| 6 | 6 | 0.759 |
| 60 | 60 | 0.541 |
| 61 | 61 | 0.437 |
| 62 | 62 | 0.802 |
| 63 | 63 | 0.492 |
| 64 | 64 | 0.225 |
| 65 | 65 | 0.438 |
| 66 | 66 | 0.115 |
| 67 | 67 | 0.597 |
| 68 | 68 | 0.897 |
| 69 | 69 | 0.00108 |
| 7 | 7 | 0.3 |
| 70 | 70 | 0.792 |
| 71 | 71 | 0.468 |
| 72 | 72 | 0.705 |
| 73 | 73 | 0.0762 |
| 74 | 74 | 0.13 |
| 75 | 75 | 0.503 |
| 76 | 76 | 0.153 |
| 77 | 77 | 0.0319 |
| 78 | 78 | 0.417 |
| 79 | 79 | 0.553 |
| 8 | 8 | 0.72 |
| 80 | 80 | 0.61 |
| 81 | 81 | 0.672 |
| 82 | 82 | 0.547 |
| 83 | 83 | 0.985 |
| 84 | 84 | 0.519 |
| 85 | 85 | 0.586 |
| 86 | 86 | 0.28 |
| 87 | 87 | 0.941 |
| 88 | 88 | 0.227 |
| 89 | 89 | 0.185 |
| 9 | 9 | 0.391 |
| 90 | 90 | 0.354 |
| 91 | 91 | 0.266 |
| 92 | 92 | 0.537 |
| 93 | 93 | 0.57 |
| 94 | 94 | 0.668 |
| 95 | 95 | 0.554 |
| 96 | 96 | 0.577 |
| 97 | 97 | 0.269 |
| 98 | 98 | 0.965 |
| 99 | 99 | 0.0202 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11341
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0002536 (amniotic epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000305 (amnion)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0000158 (membranous layer)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000009 (human amniotic epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
