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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001043,UBERON:0002100,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0005177,UBERON:0003104,UBERON:0000464,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0007026,UBERON:0001041,UBERON:0002224,UBERON:0000915,UBERON:0009142,UBERON:0006595,UBERON:0006603,UBERON:0009143
|DRA_sample_Accession=CAGE@SAMD00005295
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002251,CL:0002252,CL:0000223
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005295
|accession_numbers=CAGE;DRX008237;DRR009109;DRZ000534;DRZ001919;DRZ011884;DRZ013269
|accession_numbers_RNASeq=sRNA-Seq;DRX037166;DRR041532;DRZ007174
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001043,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0001555,UBERON:0001041,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002252
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000056
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.47!331.00!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.37!235.93!SOX15;;chr1:209979411..209979433,-!p2@IRF6!2.18!150.02!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.10!123.85!HES2;;chr3:189507432..189507459,+!p1@TP63!2.01!102.48!TP63;;chr6:10415276..10415341,-!p2@TFAP2A!1.89!92.02!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.86!106.41!PITX1;;chr4:57547454..57547469,-!p1@HOPX!1.80!61.93!HOPX;;chr12:54785074..54785122,-!p2@ZNF385A!1.79!92.02!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.77!118.62!SOX15;;chr17:80797886..80797906,-!p1@ZNF750!1.76!56.69!ZNF750;;chr5:134369879..134369898,-!p2@PITX1!1.70!49.28!PITX1;;chr14:37131058..37131139,+!p1@PAX9!1.70!48.84!PAX9;;chr12:54785054..54785072,-!p4@ZNF385A!1.66!50.59!ZNF385A;;chr22:19748231..19748317,+!p1@TBX1!1.59!37.94!TBX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.58!60.62!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.55!34.89!IRX2;;chr5:2751785..2751808,-!p2@IRX2!1.55!34.45!IRX2;;chr11:34642612..34642646,+!p1@EHF!1.54!33.58!EHF;;chr1:24645832..24645853,+!p1@GRHL3!1.52!32.27!GRHL3;;chr13:73633131..73633149,+!p1@KLF5!1.45!278.66!KLF5;;chr11:129245526..129245553,+!p1@BARX2!1.45!27.04!BARX2;;chr15:83953397..83953425,-!p1@BNC1!1.42!28.78!BNC1;;chr8:10588010..10588030,-!p1@SOX7!1.37!22.68!SOX7;;chr1:24645921..24645973,+!p2@GRHL3!1.31!19.62!GRHL3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.30!163.10!PPP1R13L;;chr6:34524093..34524135,-!p1@SPDEF!1.26!17.01!SPDEF;;chr8:128748308..128748324,+!p2@MYC!1.25!457.90!MYC;;chr2:46524897..46524911,+!p2@EPAS1!1.19!40.12!EPAS1;;chr3:111314186..111314204,-!p1@ZBED2!1.19!14.39!ZBED2;;chr11:65554528..65554546,+!p1@OVOL1!1.17!13.96!OVOL1;;chr6:10415484..10415508,-!p3@TFAP2A!1.14!12.65!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.14!12.65!GRHL2;;chr12:53614115..53614154,-!p1@RARG!1.12!64.98!RARG;;chr17:26833339..26833378,+!p1@FOXN1!1.12!12.21!FOXN1;;chr20:55204351..55204377,+!p1@TFAP2C!1.10!14.83!TFAP2C;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!10.90!TFAP2A;;chr1:209979375..209979386,-!p4@IRF6!1.06!10.47!IRF6;;chr1:209979449..209979460,-!p3@IRF6!1.06!10.47!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.04!10.03!CERS3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.04!10.03!TFCP2L1;;chr3:189507460..189507471,+!p3@TP63!1.04!10.03!TP63;;chr6:10412576..10412599,-!p5@TFAP2A!1.04!10.03!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!1.04!10.03!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.03!16.14!FOXQ1;;chr12:66218255..66218304,+!p3@HMGA2!1.01!25.29!HMGA2;;chr5:3595977..3595999,+!p1@IRX1!1.01!9.16!IRX1;;chr5:3595934..3595957,+!p2@IRX1!0.99!8.72!IRX1;;chr5:3595961..3595975,+!p3@IRX1!0.99!8.72!IRX1;;chr1:2461692..2461710,-!p1@HES5!0.97!8.29!HES5;;chr12:53625966..53626012,-!p2@RARG!0.96!21.80!RARG;;chr2:45236540..45236577,-!p1@SIX2!0.95!7.85!SIX2;;chr2:63277948..63277974,+!p1@OTX1!0.95!7.85!OTX1;;chr3:181429704..181429722,+!p1@SOX2!0.92!7.41!SOX2;;chr1:201979743..201979762,+!p1@ELF3!0.92!7.41!ELF3;;chr5:1887070..1887114,-!p1@IRX4!0.92!7.41!IRX4;;chr2:60778035..60778060,-!p4@BCL11A!0.91!8.72!BCL11A;;chr20:18038521..18038571,-!p1@OVOL2!0.90!6.98!OVOL2;;chr17:48072574..48072597,-!p1@DLX3!0.90!6.98!DLX3;;chr14:38064429..38064486,-!p1@FOXA1!0.90!6.98!FOXA1;;chr11:47236584..47236679,+!p1@DDB2!0.89!77.19!DDB2;;chr11:129245736..129245758,+!p2@BARX2!0.88!6.54!BARX2;;chr17:8027418..8027432,-!p1@HES7!0.88!6.54!HES7;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.74!SNAI2;;chr22:42229246..42229270,+!p2@SREBF2!0.86!82.86!SREBF2;;chr17:38465441..38465481,+!p6@RARA!0.86!7.85!RARA;;chr1:8938709..8938720,-!p3@ENO1!0.85!310.50!ENO1;;chr1:10856694..10856715,-!p3@CASZ1!0.85!6.11!CASZ1;;chrY:21906594..21906622,-!p1@KDM5D!0.85!6.11!KDM5D;;chr22:42229210..42229229,+!p3@SREBF2!0.84!14.39!SREBF2;;chr2:85360499..85360598,+!p1@TCF7L1!0.83!34.89!TCF7L1;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.41!SNAI2;;chr5:1887052..1887065,-!p2@IRX4!0.82!5.67!IRX4;;chr14:21566731..21566836,-!p1@ZNF219!0.80!61.05!ZNF219;;chr17:38465413..38465438,+!p5@RARA!0.80!8.72!RARA;;chr21:40177845..40177863,+!p1@ETS2!0.79!337.10!ETS2;;chr1:154975258..154975330,+!p1@ZBTB7B!0.79!20.50!ZBTB7B;;chr2:10091815..10091864,+!p1@GRHL1!0.79!6.98!GRHL1;;chr17:80797863..80797874,-!p2@ZNF750!0.79!5.23!ZNF750;;chr19:45908278..45908282,-!p5@PPP1R13L!0.79!5.23!PPP1R13L;;chr1:154975229..154975247,+!p6@ZBTB7B!0.79!5.23!ZBTB7B;;chr20:22565185..22565223,-!p3@FOXA2!0.79!5.23!FOXA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.77!8.29!ZBTB16;;chr11:65687362..65687436,+!p3@DRAP1!0.76!23.55!DRAP1;;chr1:40367530..40367597,-!p1@MYCL1!0.76!9.16!MYCL1;;chr1:8926441..8926473,-!p10@ENO1!0.76!7.41!ENO1;;chr20:22565370..22565388,-!p2@FOXA2!0.76!4.80!FOXA2;;chr11:65554563..65554576,+!p2@OVOL1!0.76!4.80!OVOL1;;chr15:67391010..67391046,+!p13@SMAD3!0.76!4.80!SMAD3;;chr6:10419824..10419840,-!p9@TFAP2A!0.76!4.80!TFAP2A;;chr3:193853927..193853944,+!p1@HES1!0.75!169.20!HES1;;chr16:54964740..54964789,+!p1@IRX5!0.75!6.98!IRX5;;chr8:48650715..48650735,-!p1@CEBPD!0.74!648.47!CEBPD;;chr1:37940170..37940190,+!p1@ZC3H12A!0.74!62.36!ZC3H12A;;chr16:79634624..79634642,-!p1@MAF!0.74!19.62!MAF;;chr1:935398..935465,-!p2@HES4!0.74!10.03!HES4;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.29!EPAS1;;chr4:299227..299272,-!p1@ZNF732!0.73!4.36!ZNF732;;chr17:45928443..45928473,-!p2@SP6!0.73!4.36!SP6;;chr1:24646263..24646277,+!p4@GRHL3!0.73!4.36!GRHL3;;chr14:61116183..61116208,-!p1@SIX1!0.72!17.88!SIX1;;chr10:77161504..77161530,-!p1@ZNF503!0.71!62.36!ZNF503;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!328.38!TAX1BP3;;chr19:17356189..17356221,-!p2@NR2F6!0.70!6.98!NR2F6;;chr6:106546808..106546833,+!p3@PRDM1!0.70!5.23!PRDM1;;chr10:48355030..48355090,+!p1@ZNF488!0.69!5.23!ZNF488;;chr15:67458861..67458879,+!p17@SMAD3!0.69!3.92!SMAD3;;chr2:45236579..45236596,-!p2@SIX2!0.69!3.92!SIX2;;chr4:57522674..57522699,-!p5@HOPX!0.69!3.92!HOPX;;chr5:134369973..134369984,-!p3@PITX1!0.69!3.92!PITX1;;chr1:201979703..201979721,+!p2@ELF3!0.69!3.92!ELF3;;chr1:24646002..24646013,+!p3@GRHL3!0.69!3.92!GRHL3;;chr12:66218212..66218244,+!p5@HMGA2!0.67!5.67!HMGA2;;chr8:128747661..128747703,+!p6@MYC!0.67!5.23!MYC;;chr9:137217986..137218049,+!p3@RXRA!0.66!11.34!RXRA;;chr6:34204672..34204692,+!p1@HMGA1!0.65!458.33!HMGA1;;chr19:42759266..42759290,-!p1@ERF!0.65!129.52!ERF;;chr6:34524049..34524089,-!p2@SPDEF!0.65!3.49!SPDEF;;chr8:102504979..102505010,+!p2@GRHL2!0.65!3.49!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.65!3.49!NKX2-8;;chr3:111314230..111314241,-!p2@ZBED2!0.65!3.49!ZBED2;;chr12:48298765..48298783,-!p2@VDR!0.64!7.85!VDR;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.67!ZFP64;;chr1:8938736..8938756,-!p1@ENO1!0.63!4280.70!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.63!266.02!ENO1;;chr12:66218183..66218209,+!p4@HMGA2!0.63!6.98!HMGA2;;chr15:96869222..96869251,+!p18@NR2F2!0.63!3.92!NR2F2;;chr2:60780753..60780800,-!p1@BCL11A!0.62!18.32!BCL11A;;chr19:45579725..45579743,-!p1@ZNF296!0.62!16.57!ZNF296;;chr2:60780607..60780624,-!p2@BCL11A!0.61!10.90!BCL11A;;chr1:10856639..10856662,-!p2@CASZ1!0.61!3.05!CASZ1;;chr1:116383738..116383752,-!p1@NHLH2!0.61!3.05!NHLH2;;chr1:50889155..50889173,-!p2@DMRTA2!0.61!3.05!DMRTA2;;chr20:50722202..50722217,-!p7@ZFP64!0.61!3.05!ZFP64;;chr18:53089453..53089482,-!p11@TCF4!0.61!3.05!TCF4;;chr5:134369643..134369675,-!p4@PITX1!0.61!3.05!PITX1;;chr8:102504690..102504704,+!p3@GRHL2!0.61!3.05!GRHL2;;chr14:74226747..74226779,-!p3@C14orf43!0.60!19.62!C14orf43;;chr15:67418047..67418093,+!p4@SMAD3!0.60!3.92!SMAD3;;chr8:128748470..128748487,+!p1@MYC!0.59!395.97!MYC;;chr14:23755297..23755350,-!p1@HOMEZ!0.59!41.87!HOMEZ;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.59!3.92!PRDM11;;chr15:31619326..31619390,+!p2@KLF13!0.58!39.25!KLF13;;chr5:137804484..137804498,+!p2@EGR1!0.58!13.52!EGR1;;chr17:61919985..61920012,-!p3@SMARCD2!0.58!7.85!SMARCD2;;chr16:79633894..79633954,-!p3@MAF!0.58!6.11!MAF;;chr12:125002827..125002855,-!p5@NCOR2!0.58!4.36!NCOR2;;chr2:208030647..208030689,-!p1@KLF7!0.57!27.91!KLF7;;chr12:66218598..66218645,+!p2@HMGA2!0.57!15.26!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!0.57!13.96!ETV4;;chr7:42276822..42276895,-!p2@GLI3!0.57!9.59!GLI3;;chr1:151032782..151032801,+!p4@MLLT11!0.57!6.11!MLLT11;;chr11:62369204..62369217,-!p7@MTA2!0.56!6.54!MTA2;;chrX:107018969..107019024,-!p6@TSC22D3!0.56!3.92!TSC22D3;;chr14:37126765..37126799,+!p2@PAX9!0.56!2.62!PAX9;;chr2:113994526..113994556,-!p3@PAX8!0.56!2.62!PAX8;;chr3:189507523..189507535,+!p5@TP63!0.56!2.62!TP63;;chr19:45908286..45908291,-!p3@PPP1R13L!0.56!2.62!PPP1R13L;;chr19:50542543..50542548,+!p2@ZNF473!0.56!2.62!ZNF473;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.62!OVOL2;;chr20:22564895..22564910,-!p1@FOXA2!0.56!2.62!FOXA2;;chr20:55205825..55205847,+!p2@TFAP2C!0.56!2.62!TFAP2C;;chr6:1312155..1312187,+!p2@FOXQ1!0.56!2.62!FOXQ1;;chr15:83953373..83953386,-!p2@BNC1!0.56!2.62!BNC1;;chr16:79634581..79634592,-!p4@MAF!0.56!2.62!MAF;;chr19:12902289..12902307,+!p1@JUNB!0.55!747.47!JUNB;;chr10:77161650..77161661,-!p4@ZNF503!0.55!3.92!ZNF503;;chr13:73636516..73636532,+!p3@KLF5!0.55!3.05!KLF5;;chrX:107019163..107019179,-!p7@TSC22D3!0.55!3.05!TSC22D3;;chr6:10412392..10412409,-!p4@TFAP2A!0.55!3.05!TFAP2A;;chr9:137218281..137218340,+!p1@RXRA!0.54!88.96!RXRA;;chr17:61920023..61920110,-!p1@SMARCD2!0.54!44.48!SMARCD2;;chr6:21597765..21597779,+!p2@SOX4!0.54!25.29!SOX4;;chr17:17726907..17726958,-!p2@SREBF1!0.54!19.19!SREBF1;;chr12:7079780..7079791,-!p2@PHB2!0.54!16.14!PHB2;;chr19:46271505..46271575,-!p2@SIX5!0.54!7.41!SIX5;;chr11:65686802..65686818,+!p6@DRAP1!0.54!4.80!DRAP1;;chr11:113930425..113930471,+!p1@ZBTB16!0.54!3.92!ZBTB16;;chr8:28243934..28243993,-!p3@ZNF395!0.53!7.85!ZNF395;;chr16:67881588..67881612,-!p2@CENPT!0.53!3.49!CENPT;;chr8:28243785..28243799,-!p6@ZNF395!0.53!3.05!ZNF395;;chr20:48807351..48807384,+!p1@CEBPB!0.52!309.19!CEBPB;;chr11:65686952..65686975,+!p5@DRAP1!0.52!16.14!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.52!6.98!TWIST1;;chr1:10754477..10754517,-!p1@CASZ1!0.52!4.36!CASZ1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.51!317.91!ZFP36L2;;chr6:7108569..7108683,+!p3@RREB1!0.51!10.90!RREB1;;chr18:3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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001043;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Esophageal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11323.11507-119G4.hg38.nobarcode.ctss.bed.gz
|id=FF:11507-119G4
|id=FF:11507-119G4
|is_a=EFO:0002091;;FF:0000002;;FF:0000056;;FF:0000210
|is_a=EFO:0002091;;FF:0000056
|is_obsolete=
|library_id=CNhs11323
|library_id_phase_based=2:CNhs11323
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11507
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.TGACCA.11507
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11507
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.TGACCA.11507
|name=Esophageal Epithelial Cells, donor1
|name=Esophageal Epithelial Cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11323,LSID768,release014,COMPLETED
|profile_hcage=CNhs11323,LSID768,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10011,,,
|profile_srnaseq=SRhi10011,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=119
|rna_box=119
|rna_catalog_number=SC2705
|rna_catalog_number=SC2705
Line 56: Line 82:
|rna_tube_id=119G4
|rna_tube_id=119G4
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.TGACCA
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 77: Line 105:
|sample_tissue=esophagus
|sample_tissue=esophagus
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|top_motifs=TP53:2.64185996292;TBX4,5:2.02474445227;SNAI1..3:1.96551805252;ZEB1:1.95281314181;VSX1,2:1.69766302396;ZNF423:1.69635219059;XCPE1{core}:1.63554626005;ZNF148:1.55107219694;HAND1,2:1.46191110765;MYOD1:1.43633567996;LMO2:1.27533355006;GTF2A1,2:1.25489703585;NR5A1,2:1.2405632945;TBP:1.20430149049;NKX2-3_NKX2-5:1.16155336249;TFCP2:1.15521939432;EBF1:1.15189046527;ONECUT1,2:1.01937280583;ADNP_IRX_SIX_ZHX:0.993469855703;PPARG:0.934609108183;NANOG:0.92158871748;TEAD1:0.87652342471;SP1:0.855319528402;ZIC1..3:0.818633794822;POU1F1:0.7804401713;GLI1..3:0.713183567727;HIF1A:0.7073367437;CEBPA,B_DDIT3:0.698011718916;POU2F1..3:0.676563916193;ZNF238:0.621735128742;CRX:0.619907842628;IKZF1:0.616571769811;TEF:0.609717107752;STAT5{A,B}:0.587696206142;TFAP2{A,C}:0.585865680947;FOS_FOS{B,L1}_JUN{B,D}:0.55504703362;PAX1,9:0.538432678535;MTF1:0.524257080073;RREB1:0.505882114119;FOXM1:0.469927447597;bHLH_family:0.459804604629;EP300:0.451439397796;GZF1:0.439365617266;HOX{A5,B5}:0.407501419623;BACH2:0.389354928542;FOSL2:0.381676360169;LHX3,4:0.370658579008;HES1:0.368898976322;GFI1B:0.314795209355;SMAD1..7,9:0.298555093199;TLX1..3_NFIC{dimer}:0.297073429914;NR1H4:0.290218651802;PBX1:0.286538469834;TFAP4:0.285167367006;GCM1,2:0.267449591039;ZBTB6:0.264032598088;AR:0.255288843898;HLF:0.244152723319;FOXQ1:0.238694836949;NR6A1:0.205888065067;NKX2-2,8:0.176299863367;POU6F1:0.158921784059;HNF4A_NR2F1,2:0.135531210973;FOXL1:0.119361676737;PDX1:0.0998895742156;HMX1:0.0953085870938;RXR{A,B,G}:0.0806535157076;NFIL3:0.0773730661019;NKX3-2:0.056784180408;CDC5L:0.0562248999909;RXRA_VDR{dimer}:0.0476881503773;HOX{A4,D4}:0.0139218622426;HIC1:0.0129030780407;SOX17:0.00716447467937;SOX{8,9,10}:0.00442593228149;PAX5:-0.0112959857667;HNF1A:-0.0135250515419;ESR1:-0.0435721320176;NFE2:-0.0560830176708;MAZ:-0.0776412746992;OCT4_SOX2{dimer}:-0.0844717255265;ARID5B:-0.0845151047061;REST:-0.0880907042621;PITX1..3:-0.0916368474327;T:-0.0936261176505;LEF1_TCF7_TCF7L1,2:-0.102285733795;NR3C1:-0.115142831067;TOPORS:-0.116363174795;GTF2I:-0.158125792413;SOX2:-0.166681393514;FOX{F1,F2,J1}:-0.169813125432;NFKB1_REL_RELA:-0.170749280242;POU5F1:-0.177507293502;POU3F1..4:-0.189858004759;KLF4:-0.194579731451;NFIX:-0.20534754018;UFEwm:-0.209762701863;MED-1{core}:-0.225406895809;NFE2L2:-0.226360839279;FOX{I1,J2}:-0.228977718892;NFY{A,B,C}:-0.251731884565;STAT2,4,6:-0.252153748377;GATA6:-0.257942934981;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.268641344756;RBPJ:-0.275677388158;NKX2-1,4:-0.292205324028;PAX4:-0.29883755974;HOX{A6,A7,B6,B7}:-0.32002835754;TFAP2B:-0.328464200264;MEF2{A,B,C,D}:-0.356498853944;ETS1,2:-0.362825991164;SRF:-0.371779387033;ZNF384:-0.380716649019;SOX5:-0.39435748924;ZNF143:-0.414338827632;TFDP1:-0.414613127783;ESRRA:-0.42863515134;TAL1_TCF{3,4,12}:-0.433048414751;SPIB:-0.439246563913;GFI1:-0.444024878643;NHLH1,2:-0.457299412383;JUN:-0.459873934126;PAX8:-0.508591430401;SPZ1:-0.510596062211;RUNX1..3:-0.51591207319;E2F1..5:-0.519041885426;MYBL2:-0.55807021973;RFX1:-0.560509768701;ALX4:-0.565880244722;CUX2:-0.580601034856;RORA:-0.582010155179;DBP:-0.584156699816;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.592456972263;MYB:-0.60138153147;PAX2:-0.64271014437;FOXA2:-0.655517705506;IRF7:-0.66204383135;ATF2:-0.675624579532;EGR1..3:-0.676832225637;PATZ1:-0.689538803615;HSF1,2:-0.711022630536;SPI1:-0.732050767815;FOXO1,3,4:-0.760140950756;RFX2..5_RFXANK_RFXAP:-0.761400004872;MYFfamily:-0.762806986613;PAX6:-0.772163926072;NFE2L1:-0.804480449222;NKX6-1,2:-0.810645710365;MTE{core}:-0.814261541059;TGIF1:-0.838680354057;PAX3,7:-0.854526285498;NRF1:-0.857351083735;BREu{core}:-0.863508013182;PRRX1,2:-0.887949197269;YY1:-0.901524000812;FOX{D1,D2}:-0.925884252253;MZF1:-0.940573318376;MAFB:-0.960474968395;ATF5_CREB3:-0.96340837028;ELF1,2,4:-0.964032935691;HOXA9_MEIS1:-0.974388936861;FOXN1:-0.992893852304;TLX2:-0.999923007122;PRDM1:-1.01363485389;FOXP3:-1.01527370063;ELK1,4_GABP{A,B1}:-1.03203139099;GATA4:-1.03697996197;ZFP161:-1.04210371006;EVI1:-1.05934779065;FOXP1:-1.10637964108;HBP1_HMGB_SSRP1_UBTF:-1.11659398276;NFATC1..3:-1.12610079516;BPTF:-1.1578268395;ATF4:-1.1667953031;IRF1,2:-1.19486707203;ATF6:-1.25199375356;ALX1:-1.26240441216;CDX1,2,4:-1.28435385539;IKZF2:-1.30034583702;AHR_ARNT_ARNT2:-1.30741626782;CREB1:-1.31149473189;ZBTB16:-1.3237705212;NANOG{mouse}:-1.35730523254;AIRE:-1.37447118313;DMAP1_NCOR{1,2}_SMARC:-1.40719031532;STAT1,3:-1.43764739937;HMGA1,2:-1.47384753256;NKX3-1:-1.48545031628;XBP1:-1.54885998989;EN1,2:-1.65743984206;FOXD3:-1.83387015515;SREBF1,2:-1.91750308516
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11507-119G4;search_select_hide=table117:FF:11507-119G4
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Esophageal Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11323
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueesophagus
dev stageNA
sexNA
ageNA
cell typeesophageal epithelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4602
catalog numberSC2705
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005295
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11323 CAGE DRX008237 DRR009109
Accession ID Hg19

Library idBAMCTSS
CNhs11323 DRZ000534 DRZ001919
Accession ID Hg38

Library idBAMCTSS
CNhs11323 DRZ011884 DRZ013269
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005295
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.TGACCA sRNA-Seq DRX037166 DRR041532
Accession ID Hg19

Library idBAMCTSS
SRhi10011.TGACCA DRZ007174


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0507
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.205
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.272
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0856
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.395
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.00905
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0885
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.763
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0663
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.366
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.144
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.363
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.224
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.157
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.157
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11323

Jaspar motifP-value
MA0002.20.404
MA0003.10.376
MA0004.10.819
MA0006.10.244
MA0007.10.302
MA0009.10.102
MA0014.10.598
MA0017.10.0724
MA0018.20.00183
MA0019.10.34
MA0024.10.0552
MA0025.10.48
MA0027.10.779
MA0028.10.0242
MA0029.10.2
MA0030.10.466
MA0031.10.065
MA0035.20.094
MA0038.10.977
MA0039.20.0172
MA0040.10.635
MA0041.10.293
MA0042.10.936
MA0043.10.0306
MA0046.10.134
MA0047.20.166
MA0048.10.864
MA0050.12.30457e-9
MA0051.15.85801e-6
MA0052.10.846
MA0055.10.2
MA0057.10.0362
MA0058.10.469
MA0059.10.605
MA0060.10.616
MA0061.10.663
MA0062.21.79772e-4
MA0065.20.00872
MA0066.10.206
MA0067.10.0194
MA0068.10.0106
MA0069.10.747
MA0070.10.149
MA0071.10.443
MA0072.10.692
MA0073.10.932
MA0074.10.658
MA0076.10.00118
MA0077.10.194
MA0078.10.47
MA0079.20.54
MA0080.21.70694e-5
MA0081.10.0206
MA0083.10.795
MA0084.10.0546
MA0087.10.654
MA0088.10.651
MA0090.10.00869
MA0091.10.782
MA0092.10.448
MA0093.10.64
MA0099.22.14863e-8
MA0100.10.132
MA0101.10.616
MA0102.20.0743
MA0103.11.33338e-5
MA0104.20.972
MA0105.10.488
MA0106.13.17986e-6
MA0107.10.732
MA0108.20.00175
MA0111.10.876
MA0112.20.0329
MA0113.10.234
MA0114.10.0456
MA0115.10.887
MA0116.10.131
MA0117.10.334
MA0119.10.083
MA0122.10.819
MA0124.10.285
MA0125.10.0316
MA0131.10.211
MA0135.10.0155
MA0136.15.71016e-5
MA0137.20.0347
MA0138.20.148
MA0139.10.691
MA0140.10.747
MA0141.10.264
MA0142.10.0822
MA0143.10.555
MA0144.10.882
MA0145.10.0403
MA0146.10.0554
MA0147.10.711
MA0148.10.0573
MA0149.10.0628
MA0150.10.576
MA0152.10.0987
MA0153.10.215
MA0154.10.0958
MA0155.10.239
MA0156.16.43726e-4
MA0157.10.13
MA0159.10.317
MA0160.10.412
MA0162.10.151
MA0163.10.46
MA0164.10.37
MA0258.10.194
MA0259.10.959



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11323

Novel motifP-value
10.515
100.581
1000.677
1010.497
1020.578
1030.186
1040.537
1050.074
1060.0487
1070.0171
1080.47
1090.0223
110.122
1100.204
1110.205
1120.325
1130.913
1140.31
1150.37
1160.579
1170.754
1180.724
1190.117
120.435
1200.429
1210.545
1220.101
1230.873
1240.917
1250.472
1260.586
1270.123
1280.112
1290.05
130.162
1300.882
1310.293
1320.124
1334.78259e-4
1340.933
1350.425
1360.743
1370.358
1380.89
1390.655
140.592
1400.88
1410.968
1420.0603
1430.457
1440.554
1450.113
1460.0402
1470.22
1480.983
1490.233
150.579
1500.341
1510.292
1520.0964
1530.982
1540.609
1550.362
1560.11
1570.351
1580.543
1590.936
160.218
1600.0273
1610.301
1620.399
1630.754
1640.877
1650.559
1660.736
1670.302
1680.545
1690.0515
170.132
180.197
190.334
20.156
200.73
210.948
220.151
230.166
240.0797
250.945
260.216
270.269
280.912
290.744
30.428
300.139
310.579
320.317
330.286
340.545
350.514
360.9
370.421
380.302
390.203
40.162
400.0105
410.901
420.499
430.355
440.666
450.151
460.264
470.347
480.196
490.366
50.637
500.429
510.453
520.293
530.981
540.47
550.364
560.3
570.178
580.558
590.048
60.368
600.139
610.711
620.575
630.144
640.204
650.0843
660.532
670.836
680.652
690.0738
70.4
700.0045
710.256
720.754
730.0929
740.0468
750.54
760.53
770.0191
780.108
790.645
80.117
800.963
810.804
820.449
830.926
840.523
850.11
860.751
870.359
880.238
890.0362
90.622
900.148
910.166
920.443
930.917
940.451
950.333
960.787
970.928
980.302
990.0136



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11323


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002252 (epithelial cell of esophagus)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001043 (esophagus)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001041 (foregut)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000056 (human epithelial cell of esophagus sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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