FF:11420-118F7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005852 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005852 | ||
|accession_numbers=CAGE;DRX008298;DRR009170;DRZ000595;DRZ001980;DRZ011945;DRZ013330 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037051;DRR041417;DRZ007059 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0000412,UBERON:0002067,UBERON:0001992,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002559,CL:0000346,CL:1000428 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000072,FF:0000001,FF:0000071 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.11!161.62!TFAP2C;;chr7:19157248..19157268,-!p1@TWIST1!1.85!186.48!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.78!59.40!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.83!PRRX2;;chr6:34204921..34204939,+!p3@HMGA1!1.70!1403.45!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!1.54!58.02!DRAP1;;chr4:81118647..81118666,+!p1@PRDM8!1.53!42.82!PRDM8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.15!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!146.42!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!33.15!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.01!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.33!55.25!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.31!19.34!EN1;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.34!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!1.30!84.26!FOXD1;;chr5:321810..321877,+!p1@AHRR!1.27!55.25!AHRR;;chr11:65667846..65667868,-!p1@FOSL1!1.25!426.84!FOSL1;;chr12:53614115..53614154,-!p1@RARG!1.24!87.03!RARG;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.39!RUNX3;;chr3:147127177..147127194,+!p2@ZIC1!1.24!16.58!ZIC1;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.54!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.19!16.58!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.18!53.87!FOSL1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.18!15.19!GLIS1;;chr11:65687362..65687436,+!p3@DRAP1!1.16!60.78!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.72!CREB3L1;;chr6:34204973..34204990,+!p4@HMGA1!1.10!154.71!HMGA1;;chr3:157823517..157823562,-!p1@SHOX2!1.10!12.43!SHOX2;;chr4:4861385..4861398,+!p1@MSX1!1.08!33.15!MSX1;;chr11:44331576..44331650,-!p1@ALX4!1.08!11.05!ALX4;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.05!IRX2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.05!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!1.07!13.81!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!1.04!11.05!HOXB2;;chr2:102091566..102091581,-!p1@RFX8!1.03!9.67!RFX8;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.67!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.05!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!1.01!30.39!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.01!TBX2;;chr17:41622925..41622976,-!p3@ETV4!1.01!13.81!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.02!SNAI2;;chr19:31840130..31840160,-!p2@TSHZ3!0.99!13.81!TSHZ3;;chr11:46299186..46299195,+!p3@CREB3L1!0.98!9.67!CREB3L1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!958.66!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.97!9.67!BNC1;;chr2:176994919..176994931,+!p2@HOXD8!0.97!8.29!HOXD8;;chr2:96012397..96012417,+!p3@KCNIP3!0.97!8.29!KCNIP3;;chr3:147111198..147111225,+!p4@ZIC1!0.97!8.29!ZIC1;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.97!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.67!FOXF1;;chr10:77161133..77161176,-!p3@ZNF503!0.93!16.58!ZNF503;;chr20:42543506..42543549,+!p2@TOX2!0.92!17.96!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.43!FOXD1;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.43!TWIST2;;chr5:134369905..134369972,-!p1@PITX1!0.91!11.05!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.91!8.29!HOXB6;;chr16:31076332..31076388,-!p3@ZNF668!0.90!6.91!ZNF668;;chr5:3595977..3595999,+!p1@IRX1!0.90!6.91!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.91!TBX20;;chr1:170633058..170633084,+!p5@PRRX1!0.90!6.91!PRRX1;;chr2:114036488..114036504,-!p1@PAX8!0.90!6.91!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.90!6.91!HOXD8;;chr3:25470156..25470227,+!p2@RARB!0.90!6.91!RARB;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.58!NFATC4;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.67!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.91!PRRX1;;chr11:65687158..65687216,+!p4@DRAP1!0.85!37.30!DRAP1;;chr12:53614155..53614187,-!p3@RARG!0.85!12.43!RARG;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.67!HOXB2;;chr17:46621101..46621143,-!p7@HOXB2!0.85!8.29!HOXB2;;chr1:149858461..149858479,+!p1@BOLA1!0.84!2498.86!BOLA1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.91!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!0.82!9.67!TFAP2A;;chr12:124873357..124873401,-!p1@NCOR2!0.81!69.07!NCOR2;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.29!SATB2;;chr2:177001290..177001315,+!p1@HOXD3!0.81!5.53!HOXD3;;chr5:2751785..2751808,-!p2@IRX2!0.81!5.53!IRX2;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.53!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.81!5.53!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.81!5.53!RUNX3;;chr20:55205825..55205847,+!p2@TFAP2C!0.81!5.53!TFAP2C;;chr11:65668011..65668020,-!p3@FOSL1!0.81!5.53!FOSL1;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.02!FOXM1;;chr20:42543441..42543497,+!p1@TOX2!0.79!24.86!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.81!TWIST1;;chr17:38256799..38256815,-!p3@NR1D1!0.78!9.67!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.91!TBX2;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.86!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.77!8.29!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.76!377.11!TAX1BP3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.10!ETV4;;chr7:150946015..150946070,-!p3@SMARCD3!0.76!11.05!SMARCD3;;chr7:44143925..44143970,+!p1@AEBP1!0.75!114.65!AEBP1;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.05!HOXB2;;chr15:57511609..57511651,+!p2@TCF12!0.75!8.29!TCF12;;chr19:17356436..17356481,-!p3@NR2F6!0.75!8.29!NR2F6;;chr3:25469724..25469773,+!p1@RARB!0.75!6.91!RARB;;chr4:81104985..81105005,+!p4@PRDM8!0.74!5.53!PRDM8;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!6.91!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.73!6.91!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.73!5.53!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.08!SNAI2;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.43!DLX2;;chr20:39317868..39317884,-!p1@MAFB!0.71!55.25!MAFB;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.20!TCF19;;chr8:72756667..72756736,-!p2@MSC!0.71!6.91!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.71!4.14!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.71!4.14!TCF21;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.14!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.71!4.14!RUNX1T1;;chr19:50542543..50542548,+!p2@ZNF473!0.71!4.14!ZNF473;;chr1:170632439..170632465,+!p11@PRRX1!0.71!4.14!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.71!4.14!FOXS1;;chr15:80843472..80843480,+!p22@ARNT2!0.71!4.14!ARNT2;;chr15:80843484..80843499,+!p5@ARNT2!0.71!4.14!ARNT2;;chr16:54320322..54320343,-!p7@IRX3!0.71!4.14!IRX3;;chr16:86612320..86612394,+!p1@FOXL1!0.71!4.14!FOXL1;;chr19:31840278..31840300,-!p5@TSHZ3!0.71!4.14!TSHZ3;;chr2:119605253..119605264,-!p5@EN1!0.71!4.14!EN1;;chr2:176987463..176987479,+!p2@HOXD9!0.71!4.14!HOXD9;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.14!MEIS1;;chr3:157824001..157824078,-!p2@SHOX2!0.71!4.14!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.14!TBX3;;chrX:136648643..136648711,+!p2@ZIC3!0.71!4.14!ZIC3;;chr20:30193083..30193098,+!p1@ID1!0.70!372.96!ID1;;chr9:35732592..35732640,+!p1@CREB3!0.69!59.40!CREB3;;chr5:174151553..174151610,+!p1@MSX2!0.69!6.91!MSX2;;chr19:50431999..50432026,+!p4@ATF5!0.69!5.53!ATF5;;chr11:65687243..65687276,+!p8@DRAP1!0.69!5.53!DRAP1;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.53!ZNF503;;chr1:8938709..8938720,-!p3@ENO1!0.66!200.30!ENO1;;chr5:176738887..176738934,-!p1@MXD3!0.66!27.63!MXD3;;chr12:2986206..2986258,-!p2@FOXM1!0.66!24.86!FOXM1;;chr21:47063625..47063658,+!p1@PCBP3!0.66!17.96!PCBP3;;chr2:101591314..101591333,+!p2@NPAS2!0.66!4.14!NPAS2;;chr6:45296048..45296082,+!p1@RUNX2!0.66!4.14!RUNX2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.48!MYBL2;;chr12:53856284..53856299,+!p3@PCBP2!0.65!11.05!PCBP2;;chr20:39946400..39946423,-!p3@ZHX3!0.65!6.91!ZHX3;;chr9:3526360..3526421,-!p5@RFX3!0.64!6.91!RFX3;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.05!ZHX3;;chr12:66218003..66218018,+!p9@HMGA2!0.63!4.14!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.77!TBX3;;chr2:208031542..208031595,-!p2@KLF7!0.62!26.25!KLF7;;chr2:28616358..28616380,+!p3@FOSL2!0.62!19.34!FOSL2;;chr19:46272462..46272562,-!p1@SIX5!0.62!15.19!SIX5;;chr7:42276787..42276815,-!p1@GLI3!0.62!9.67!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.67!HOXB2;;chr5:72744562..72744573,-!p3@FOXD1!0.62!4.14!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.61!256.93!ENO1;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.10!NCOR2;;chr3:150126759..150126784,+!p2@TSC22D2!0.61!16.58!TSC22D2;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.43!DPF3;;chr19:926001..926046,+!p1@ARID3A!0.61!12.43!ARID3A;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.53!GLI2;;chr9:117150303..117150312,-!p3@AKNA!0.61!4.14!AKNA;;chr19:18392274..18392286,-!p3@JUND!0.60!23.48!JUND;;chr20:32274179..32274213,-!p1@E2F1!0.60!23.48!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.34!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.59!58.02!MYBL2;;chr19:1592828..1592910,-!p2@MBD3!0.59!27.63!MBD3;;chr17:1958388..1958404,+!p1@HIC1!0.59!22.10!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.59!5.53!TBX2;;chr19:7584815..7584829,+!p2@ZNF358!0.59!4.14!ZNF358;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.77!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.58!17.96!ETV1;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.76!IRX1;;chr6:27356595..27356611,+!p6@ZNF391!0.58!2.76!ZNF391;;chr8:72756380..72756427,-!p8@MSC!0.58!2.76!MSC;;chr10:64134045..64134083,+!p3@ZNF365!0.58!2.76!ZNF365;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.76!CREB3L1;;chr12:53613935..53613947,-!p8@RARG!0.58!2.76!RARG;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.76!HMGA2;;chrX:136648279..136648295,+!p1@ZIC3!0.58!2.76!ZIC3;;chr2:5832508..5832524,+!p1@SOX11!0.58!2.76!SOX11;;chr2:74730087..74730102,-!p4@LBX2!0.58!2.76!LBX2;;chr2:96012353..96012378,+!p4@KCNIP3!0.58!2.76!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!0.58!2.76!ZBTB20;;chr3:141121820..141121838,+!p9@ZBTB38!0.58!2.76!ZBTB38;;chr3:147111231..147111281,+!p3@ZIC1!0.58!2.76!ZIC1;;chr3:147114993..147115013,-!p5@ZIC4!0.58!2.76!ZIC4;;chr3:147139053..147139112,+!p5@ZIC1!0.58!2.76!ZIC1;;chr4:109089095..109089144,-!p6@LEF1!0.58!2.76!LEF1;;chr4:111558135..111558198,-!p2@PITX2!0.58!2.76!PITX2;;chr19:38183228..38183242,-!p4@ZNF781!0.58!2.76!ZNF781;;chr19:9420326..9420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| |expression_enrichment_score=chr20:55204351..55204377,+!p1@TFAP2C!2.11!161.62!TFAP2C;;chr7:19157248..19157268,-!p1@TWIST1!1.85!186.48!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.78!59.40!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.83!PRRX2;;chr6:34204921..34204939,+!p3@HMGA1!1.70!1403.45!HMGA1;;chr11:65686802..65686818,+!p6@DRAP1!1.54!58.02!DRAP1;;chr4:81118647..81118666,+!p1@PRDM8!1.53!42.82!PRDM8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.15!ZBED1;;chr11:46299199..46299233,+!p1@CREB3L1!1.48!146.42!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!1.48!33.15!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.35!29.01!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.33!55.25!OSR1;;chr2:119605214..119605230,-!p1@EN1!1.31!19.34!EN1;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.34!ZIC1;;chr5:72744594..72744609,-!p1@FOXD1!1.30!84.26!FOXD1;;chr5:321810..321877,+!p1@AHRR!1.27!55.25!AHRR;;chr11:65667846..65667868,-!p1@FOSL1!1.25!426.84!FOSL1;;chr12:53614115..53614154,-!p1@RARG!1.24!87.03!RARG;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.39!RUNX3;;chr3:147127177..147127194,+!p2@ZIC1!1.24!16.58!ZIC1;;chr11:65686732..65686756,+!p2@DRAP1!1.21!63.54!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!1.19!16.58!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!1.18!53.87!FOSL1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.18!15.19!GLIS1;;chr11:65687362..65687436,+!p3@DRAP1!1.16!60.78!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.72!CREB3L1;;chr6:34204973..34204990,+!p4@HMGA1!1.10!154.71!HMGA1;;chr3:157823517..157823562,-!p1@SHOX2!1.10!12.43!SHOX2;;chr4:4861385..4861398,+!p1@MSX1!1.08!33.15!MSX1;;chr11:44331576..44331650,-!p1@ALX4!1.08!11.05!ALX4;;chr5:2751762..2751784,-!p1@IRX2!1.08!11.05!IRX2;;chr1:170632250..170632277,+!p7@PRRX1!1.08!11.05!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!1.07!13.81!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!1.04!11.05!HOXB2;;chr2:102091566..102091581,-!p1@RFX8!1.03!9.67!RFX8;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.67!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.05!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!1.01!30.39!TWIST2;;chr17:59477233..59477263,+!p1@TBX2!1.01!29.01!TBX2;;chr17:41622925..41622976,-!p3@ETV4!1.01!13.81!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.02!SNAI2;;chr19:31840130..31840160,-!p2@TSHZ3!0.99!13.81!TSHZ3;;chr11:46299186..46299195,+!p3@CREB3L1!0.98!9.67!CREB3L1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!958.66!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.97!9.67!BNC1;;chr2:176994919..176994931,+!p2@HOXD8!0.97!8.29!HOXD8;;chr2:96012397..96012417,+!p3@KCNIP3!0.97!8.29!KCNIP3;;chr3:147111198..147111225,+!p4@ZIC1!0.97!8.29!ZIC1;;chr9:35732647..35732678,+!p2@CREB3!0.96!46.97!CREB3;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.67!FOXF1;;chr10:77161133..77161176,-!p3@ZNF503!0.93!16.58!ZNF503;;chr20:42543506..42543549,+!p2@TOX2!0.92!17.96!TOX2;;chr5:72744445..72744466,-!p2@FOXD1!0.92!12.43!FOXD1;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.43!TWIST2;;chr5:134369905..134369972,-!p1@PITX1!0.91!11.05!PITX1;;chr17:46675420..46675465,-!p3@HOXB6!0.91!8.29!HOXB6;;chr16:31076332..31076388,-!p3@ZNF668!0.90!6.91!ZNF668;;chr5:3595977..3595999,+!p1@IRX1!0.90!6.91!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.91!TBX20;;chr1:170633058..170633084,+!p5@PRRX1!0.90!6.91!PRRX1;;chr2:114036488..114036504,-!p1@PAX8!0.90!6.91!PAX8;;chr2:176994408..176994492,+!p1@HOXD8!0.90!6.91!HOXD8;;chr3:25470156..25470227,+!p2@RARB!0.90!6.91!RARB;;chr14:24837368..24837401,+!p1@NFATC4!0.89!16.58!NFATC4;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.67!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.86!6.91!PRRX1;;chr11:65687158..65687216,+!p4@DRAP1!0.85!37.30!DRAP1;;chr12:53614155..53614187,-!p3@RARG!0.85!12.43!RARG;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.67!HOXB2;;chr17:46621101..46621143,-!p7@HOXB2!0.85!8.29!HOXB2;;chr1:149858461..149858479,+!p1@BOLA1!0.84!2498.86!BOLA1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.91!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!0.82!9.67!TFAP2A;;chr12:124873357..124873401,-!p1@NCOR2!0.81!69.07!NCOR2;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.29!SATB2;;chr2:177001290..177001315,+!p1@HOXD3!0.81!5.53!HOXD3;;chr5:2751785..2751808,-!p2@IRX2!0.81!5.53!IRX2;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.53!IRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.81!5.53!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.81!5.53!RUNX3;;chr20:55205825..55205847,+!p2@TFAP2C!0.81!5.53!TFAP2C;;chr11:65668011..65668020,-!p3@FOSL1!0.81!5.53!FOSL1;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.02!FOXM1;;chr20:42543441..42543497,+!p1@TOX2!0.79!24.86!TOX2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.81!TWIST1;;chr17:38256799..38256815,-!p3@NR1D1!0.78!9.67!NR1D1;;chr17:59477275..59477286,+!p3@TBX2!0.78!6.91!TBX2;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.86!HMGA2;;chr17:41623009..41623053,-!p4@ETV4!0.77!8.29!ETV4;;chr17:3571863..3571881,-!p1@TAX1BP3!0.76!377.11!TAX1BP3;;chr17:41623692..41623715,-!p1@ETV4!0.76!22.10!ETV4;;chr7:150946015..150946070,-!p3@SMARCD3!0.76!11.05!SMARCD3;;chr7:44143925..44143970,+!p1@AEBP1!0.75!114.65!AEBP1;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.05!HOXB2;;chr15:57511609..57511651,+!p2@TCF12!0.75!8.29!TCF12;;chr19:17356436..17356481,-!p3@NR2F6!0.75!8.29!NR2F6;;chr3:25469724..25469773,+!p1@RARB!0.75!6.91!RARB;;chr4:81104985..81105005,+!p4@PRDM8!0.74!5.53!PRDM8;;chr3:141121847..141121868,+!p5@ZBTB38!0.73!6.91!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.73!6.91!ETV4;;chr6:10415276..10415341,-!p2@TFAP2A!0.73!5.53!TFAP2A;;chr8:49833978..49833996,-!p1@SNAI2!0.72!98.08!SNAI2;;chr2:172967621..172967637,-!p1@DLX2!0.72!12.43!DLX2;;chr20:39317868..39317884,-!p1@MAFB!0.71!55.25!MAFB;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.20!TCF19;;chr8:72756667..72756736,-!p2@MSC!0.71!6.91!MSC;;chr5:134369879..134369898,-!p2@PITX1!0.71!4.14!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.71!4.14!TCF21;;chr8:93074803..93074845,-!p1@RUNX1T1!0.71!4.14!RUNX1T1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.71!4.14!RUNX1T1;;chr19:50542543..50542548,+!p2@ZNF473!0.71!4.14!ZNF473;;chr1:170632439..170632465,+!p11@PRRX1!0.71!4.14!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!0.71!4.14!FOXS1;;chr15:80843472..80843480,+!p22@ARNT2!0.71!4.14!ARNT2;;chr15:80843484..80843499,+!p5@ARNT2!0.71!4.14!ARNT2;;chr16:54320322..54320343,-!p7@IRX3!0.71!4.14!IRX3;;chr16:86612320..86612394,+!p1@FOXL1!0.71!4.14!FOXL1;;chr19:31840278..31840300,-!p5@TSHZ3!0.71!4.14!TSHZ3;;chr2:119605253..119605264,-!p5@EN1!0.71!4.14!EN1;;chr2:176987463..176987479,+!p2@HOXD9!0.71!4.14!HOXD9;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.14!MEIS1;;chr3:157824001..157824078,-!p2@SHOX2!0.71!4.14!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.71!4.14!ZNF732;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.14!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.14!TBX3;;chrX:136648643..136648711,+!p2@ZIC3!0.71!4.14!ZIC3;;chr20:30193083..30193098,+!p1@ID1!0.70!372.96!ID1;;chr9:35732592..35732640,+!p1@CREB3!0.69!59.40!CREB3;;chr5:174151553..174151610,+!p1@MSX2!0.69!6.91!MSX2;;chr19:50431999..50432026,+!p4@ATF5!0.69!5.53!ATF5;;chr11:65687243..65687276,+!p8@DRAP1!0.69!5.53!DRAP1;;chr10:77161650..77161661,-!p4@ZNF503!0.68!5.53!ZNF503;;chr1:8938709..8938720,-!p3@ENO1!0.66!200.30!ENO1;;chr5:176738887..176738934,-!p1@MXD3!0.66!27.63!MXD3;;chr12:2986206..2986258,-!p2@FOXM1!0.66!24.86!FOXM1;;chr21:47063625..47063658,+!p1@PCBP3!0.66!17.96!PCBP3;;chr2:101591314..101591333,+!p2@NPAS2!0.66!4.14!NPAS2;;chr6:45296048..45296082,+!p1@RUNX2!0.66!4.14!RUNX2;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.48!MYBL2;;chr12:53856284..53856299,+!p3@PCBP2!0.65!11.05!PCBP2;;chr20:39946400..39946423,-!p3@ZHX3!0.65!6.91!ZHX3;;chr9:3526360..3526421,-!p5@RFX3!0.64!6.91!RFX3;;chr20:39946361..39946379,-!p2@ZHX3!0.63!11.05!ZHX3;;chr12:66218003..66218018,+!p9@HMGA2!0.63!4.14!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.62!31.77!TBX3;;chr2:208031542..208031595,-!p2@KLF7!0.62!26.25!KLF7;;chr2:28616358..28616380,+!p3@FOSL2!0.62!19.34!FOSL2;;chr19:46272462..46272562,-!p1@SIX5!0.62!15.19!SIX5;;chr7:42276787..42276815,-!p1@GLI3!0.62!9.67!GLI3;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.67!HOXB2;;chr5:72744562..72744573,-!p3@FOXD1!0.62!4.14!FOXD1;;chr1:8938766..8938774,-!p2@ENO1!0.61!256.93!ENO1;;chr12:124873852..124873881,-!p3@NCOR2!0.61!22.10!NCOR2;;chr3:150126759..150126784,+!p2@TSC22D2!0.61!16.58!TSC22D2;;chr14:73360799..73360817,-!p1@DPF3!0.61!12.43!DPF3;;chr19:926001..926046,+!p1@ARID3A!0.61!12.43!ARID3A;;chr2:121493492..121493537,+!p2@GLI2!0.61!5.53!GLI2;;chr9:117150303..117150312,-!p3@AKNA!0.61!4.14!AKNA;;chr19:18392274..18392286,-!p3@JUND!0.60!23.48!JUND;;chr20:32274179..32274213,-!p1@E2F1!0.60!23.48!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.34!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.59!58.02!MYBL2;;chr19:1592828..1592910,-!p2@MBD3!0.59!27.63!MBD3;;chr17:1958388..1958404,+!p1@HIC1!0.59!22.10!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.59!5.53!TBX2;;chr19:7584815..7584829,+!p2@ZNF358!0.59!4.14!ZNF358;;chr12:66218836..66218888,+!p1@HMGA2!0.58!31.77!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.58!17.96!ETV1;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.76!IRX1;;chr6:27356595..27356611,+!p6@ZNF391!0.58!2.76!ZNF391;;chr8:72756380..72756427,-!p8@MSC!0.58!2.76!MSC;;chr10:64134045..64134083,+!p3@ZNF365!0.58!2.76!ZNF365;;chr11:46333934..46333963,+!p5@CREB3L1!0.58!2.76!CREB3L1;;chr12:53613935..53613947,-!p8@RARG!0.58!2.76!RARG;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.76!HMGA2;;chrX:136648279..136648295,+!p1@ZIC3!0.58!2.76!ZIC3;;chr2:5832508..5832524,+!p1@SOX11!0.58!2.76!SOX11;;chr2:74730087..74730102,-!p4@LBX2!0.58!2.76!LBX2;;chr2:96012353..96012378,+!p4@KCNIP3!0.58!2.76!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!0.58!2.76!ZBTB20;;chr3:141121820..141121838,+!p9@ZBTB38!0.58!2.76!ZBTB38;;chr3:147111231..147111281,+!p3@ZIC1!0.58!2.76!ZIC1;;chr3:147114993..147115013,-!p5@ZIC4!0.58!2.76!ZIC4;;chr3:147139053..147139112,+!p5@ZIC1!0.58!2.76!ZIC1;;chr4:109089095..109089144,-!p6@LEF1!0.58!2.76!LEF1;;chr4:111558135..111558198,-!p2@PITX2!0.58!2.76!PITX2;;chr19:38183228..38183242,-!p4@ZNF781!0.58!2.76!ZNF781;;chr19:9420326..9420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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000346;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Dermal%2520Papilla%2520Cells%252c%2520donor3.CNhs12030.11420-118F7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11420-118F7 | |id=FF:11420-118F7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000071 | ||
|is_obsolete= | |||
|library_id=CNhs12030 | |||
|library_id_phase_based=2:CNhs12030 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11420 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTTTCG.11420 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11420 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GTTTCG.11420 | |||
|name=Hair Follicle Dermal Papilla Cells, donor3 | |name=Hair Follicle Dermal Papilla Cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12030,LSID837,release011,COMPLETED | |profile_hcage=CNhs12030,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=CA602-R10a | |rna_catalog_number=CA602-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118F7 | |rna_tube_id=118F7 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GTTTCG | |||
|sample_age=36 | |sample_age=36 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=hair follicle | |sample_tissue=hair follicle | ||
|top_motifs=HES1:2.42005990871;GTF2A1,2:1.78654914346;POU2F1..3:1.63711116942;ZNF238:1.5581711626;PBX1:1.46022563213;PAX1,9:1.07160132294;TP53:1.02170092604;GFI1:1.0029707412;TFAP2{A,C}:0.997400426144;GLI1..3:0.989492028346;ESR1:0.984358056655;RXR{A,B,G}:0.922935565593;SRF:0.915914238441;HMX1:0.7984839588;ZNF423:0.791893579847;TLX1..3_NFIC{dimer}:0.766881236131;EBF1:0.742842985416;TEAD1:0.734644050603;TBP:0.716873558445;IKZF1:0.715602590232;NR5A1,2:0.691915213779;ZBTB6:0.68487122033;HAND1,2:0.673815506873;GFI1B:0.66291664761;TFCP2:0.60136991823;TFAP4:0.585656280421;MTF1:0.584436807476;TOPORS:0.56298977157;GZF1:0.557881604574;HOX{A5,B5}:0.552470088763;BACH2:0.524112485914;ZNF148:0.513776995513;NFE2L1:0.46755873109;SOX{8,9,10}:0.449485442386;SPZ1:0.434481880377;TFDP1:0.41619167011;NFE2:0.407074212289;FOS_FOS{B,L1}_JUN{B,D}:0.402744413631;TFAP2B:0.359950552332;LEF1_TCF7_TCF7L1,2:0.358627488429;ZIC1..3:0.358412980144;HIC1:0.351764318212;ESRRA:0.344386861646;STAT5{A,B}:0.341239276632;AR:0.327102942637;EN1,2:0.306908500624;PRRX1,2:0.296653910925;NFE2L2:0.296499126758;NR1H4:0.284570988788;PAX8:0.276452618734;NR3C1:0.275471456412;E2F1..5:0.272897445376;RXRA_VDR{dimer}:0.267878194992;GTF2I:0.220676975542;NFIX:0.218340384718;CRX:0.188391898554;PPARG:0.185464832325;SOX17:0.184976868726;HOXA9_MEIS1:0.17424025705;ONECUT1,2:0.173413297119;NFATC1..3:0.171206475987;POU6F1:0.163779791767;NFY{A,B,C}:0.161504122746;NANOG:0.15283986282;TAL1_TCF{3,4,12}:0.143989373704;HNF1A:0.143386929727;TBX4,5:0.12474262446;MEF2{A,B,C,D}:0.119897297138;CDC5L:0.0812346758709;REST:0.0656714557499;UFEwm:0.0318325950991;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031637448948;MYB:0.0181406163523;XCPE1{core}:0.00663620036334;YY1:0.00352137861382;ALX4:0.00171528078355;POU3F1..4:0.000431483319529;NANOG{mouse}:-0.0200606171773;FOXL1:-0.0246237141523;RUNX1..3:-0.0482354405079;bHLH_family:-0.0490874495308;MTE{core}:-0.0629971217307;NKX3-2:-0.0667040417008;XBP1:-0.0722023756464;MAFB:-0.0780453052222;PAX5:-0.090149184246;FOSL2:-0.0916988228512;KLF4:-0.105628613848;LHX3,4:-0.11965948286;ETS1,2:-0.124233192445;NKX2-3_NKX2-5:-0.127676644249;MYBL2:-0.150276917926;JUN:-0.152241343745;HLF:-0.161528431619;NFKB1_REL_RELA:-0.164805304686;HOX{A6,A7,B6,B7}:-0.166155190967;MZF1:-0.168150994253;NR6A1:-0.170583666653;AIRE:-0.172636192384;STAT2,4,6:-0.174215394821;SP1:-0.181341954514;NKX2-2,8:-0.194115218504;ATF6:-0.201665180466;HNF4A_NR2F1,2:-0.204064418684;ARID5B:-0.217064373742;DBP:-0.247131058316;SPIB:-0.261339665438;PAX2:-0.273186998715;POU5F1:-0.2766708434;HSF1,2:-0.301086033872;MED-1{core}:-0.318716820115;POU1F1:-0.32068731709;GATA6:-0.320756342835;PATZ1:-0.325493607939;PAX3,7:-0.334743274312;MAZ:-0.343367514695;IRF1,2:-0.390549675354;EGR1..3:-0.405108105275;RFX2..5_RFXANK_RFXAP:-0.430327941334;DMAP1_NCOR{1,2}_SMARC:-0.432669698989;FOX{F1,F2,J1}:-0.439306355593;PRDM1:-0.44086027498;RREB1:-0.456684455167;ZNF143:-0.462702054357;CUX2:-0.474562665339;SPI1:-0.481761931762;FOXM1:-0.485835812267;TGIF1:-0.491678778705;CEBPA,B_DDIT3:-0.497491137247;GCM1,2:-0.497895320836;RFX1:-0.534112748803;SNAI1..3:-0.540134543739;HIF1A:-0.562284951897;FOXA2:-0.595296084943;FOXO1,3,4:-0.599484543555;ELF1,2,4:-0.601272258296;SOX5:-0.602443164378;OCT4_SOX2{dimer}:-0.615605780707;T:-0.616399539399;PAX6:-0.640993325544;NKX2-1,4:-0.652912320752;VSX1,2:-0.663787771192;AHR_ARNT_ARNT2:-0.664163717773;ATF5_CREB3:-0.672048851322;MYFfamily:-0.696768048013;LMO2:-0.698162813458;ELK1,4_GABP{A,B1}:-0.6983033086;NHLH1,2:-0.706157996891;CREB1:-0.706730371356;ALX1:-0.715808264001;NFIL3:-0.717866737772;ZNF384:-0.758656274736;ZFP161:-0.767762904915;SOX2:-0.787295528773;HBP1_HMGB_SSRP1_UBTF:-0.789760706959;NRF1:-0.802867739963;EP300:-0.805691607971;PITX1..3:-0.811067927027;SMAD1..7,9:-0.816093131224;GATA4:-0.830185105916;HOX{A4,D4}:-0.859160178589;IRF7:-0.866243765504;ZEB1:-0.872854026589;ADNP_IRX_SIX_ZHX:-0.936870676384;FOX{I1,J2}:-0.951479102065;RORA:-0.963788820153;BREu{core}:-0.970746565629;NKX3-1:-0.974524046913;MYOD1:-0.980284957666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01390080512;NKX6-1,2:-1.01777631111;RBPJ:-1.03170202597;FOXQ1:-1.0653528127;TLX2:-1.09346439886;PDX1:-1.09942653748;FOX{D1,D2}:-1.19139812716;ATF2:-1.23083024342;ATF4:-1.23498929023;FOXP3:-1.25015397484;STAT1,3:-1.5033953596;BPTF:-1.53599061932;HMGA1,2:-1.56167261322;EVI1:-1.61337032772;ZBTB16:-1.6287458623;IKZF2:-1.64868240304;SREBF1,2:-1.66904713576;PAX4:-1.77433245149;FOXN1:-1.83656949927;CDX1,2,4:-1.90683830211;FOXP1:-2.05678304904;FOXD3:-2.12797111309;TEF:-2.37861532231 | |top_motifs=HES1:2.42005990871;GTF2A1,2:1.78654914346;POU2F1..3:1.63711116942;ZNF238:1.5581711626;PBX1:1.46022563213;PAX1,9:1.07160132294;TP53:1.02170092604;GFI1:1.0029707412;TFAP2{A,C}:0.997400426144;GLI1..3:0.989492028346;ESR1:0.984358056655;RXR{A,B,G}:0.922935565593;SRF:0.915914238441;HMX1:0.7984839588;ZNF423:0.791893579847;TLX1..3_NFIC{dimer}:0.766881236131;EBF1:0.742842985416;TEAD1:0.734644050603;TBP:0.716873558445;IKZF1:0.715602590232;NR5A1,2:0.691915213779;ZBTB6:0.68487122033;HAND1,2:0.673815506873;GFI1B:0.66291664761;TFCP2:0.60136991823;TFAP4:0.585656280421;MTF1:0.584436807476;TOPORS:0.56298977157;GZF1:0.557881604574;HOX{A5,B5}:0.552470088763;BACH2:0.524112485914;ZNF148:0.513776995513;NFE2L1:0.46755873109;SOX{8,9,10}:0.449485442386;SPZ1:0.434481880377;TFDP1:0.41619167011;NFE2:0.407074212289;FOS_FOS{B,L1}_JUN{B,D}:0.402744413631;TFAP2B:0.359950552332;LEF1_TCF7_TCF7L1,2:0.358627488429;ZIC1..3:0.358412980144;HIC1:0.351764318212;ESRRA:0.344386861646;STAT5{A,B}:0.341239276632;AR:0.327102942637;EN1,2:0.306908500624;PRRX1,2:0.296653910925;NFE2L2:0.296499126758;NR1H4:0.284570988788;PAX8:0.276452618734;NR3C1:0.275471456412;E2F1..5:0.272897445376;RXRA_VDR{dimer}:0.267878194992;GTF2I:0.220676975542;NFIX:0.218340384718;CRX:0.188391898554;PPARG:0.185464832325;SOX17:0.184976868726;HOXA9_MEIS1:0.17424025705;ONECUT1,2:0.173413297119;NFATC1..3:0.171206475987;POU6F1:0.163779791767;NFY{A,B,C}:0.161504122746;NANOG:0.15283986282;TAL1_TCF{3,4,12}:0.143989373704;HNF1A:0.143386929727;TBX4,5:0.12474262446;MEF2{A,B,C,D}:0.119897297138;CDC5L:0.0812346758709;REST:0.0656714557499;UFEwm:0.0318325950991;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031637448948;MYB:0.0181406163523;XCPE1{core}:0.00663620036334;YY1:0.00352137861382;ALX4:0.00171528078355;POU3F1..4:0.000431483319529;NANOG{mouse}:-0.0200606171773;FOXL1:-0.0246237141523;RUNX1..3:-0.0482354405079;bHLH_family:-0.0490874495308;MTE{core}:-0.0629971217307;NKX3-2:-0.0667040417008;XBP1:-0.0722023756464;MAFB:-0.0780453052222;PAX5:-0.090149184246;FOSL2:-0.0916988228512;KLF4:-0.105628613848;LHX3,4:-0.11965948286;ETS1,2:-0.124233192445;NKX2-3_NKX2-5:-0.127676644249;MYBL2:-0.150276917926;JUN:-0.152241343745;HLF:-0.161528431619;NFKB1_REL_RELA:-0.164805304686;HOX{A6,A7,B6,B7}:-0.166155190967;MZF1:-0.168150994253;NR6A1:-0.170583666653;AIRE:-0.172636192384;STAT2,4,6:-0.174215394821;SP1:-0.181341954514;NKX2-2,8:-0.194115218504;ATF6:-0.201665180466;HNF4A_NR2F1,2:-0.204064418684;ARID5B:-0.217064373742;DBP:-0.247131058316;SPIB:-0.261339665438;PAX2:-0.273186998715;POU5F1:-0.2766708434;HSF1,2:-0.301086033872;MED-1{core}:-0.318716820115;POU1F1:-0.32068731709;GATA6:-0.320756342835;PATZ1:-0.325493607939;PAX3,7:-0.334743274312;MAZ:-0.343367514695;IRF1,2:-0.390549675354;EGR1..3:-0.405108105275;RFX2..5_RFXANK_RFXAP:-0.430327941334;DMAP1_NCOR{1,2}_SMARC:-0.432669698989;FOX{F1,F2,J1}:-0.439306355593;PRDM1:-0.44086027498;RREB1:-0.456684455167;ZNF143:-0.462702054357;CUX2:-0.474562665339;SPI1:-0.481761931762;FOXM1:-0.485835812267;TGIF1:-0.491678778705;CEBPA,B_DDIT3:-0.497491137247;GCM1,2:-0.497895320836;RFX1:-0.534112748803;SNAI1..3:-0.540134543739;HIF1A:-0.562284951897;FOXA2:-0.595296084943;FOXO1,3,4:-0.599484543555;ELF1,2,4:-0.601272258296;SOX5:-0.602443164378;OCT4_SOX2{dimer}:-0.615605780707;T:-0.616399539399;PAX6:-0.640993325544;NKX2-1,4:-0.652912320752;VSX1,2:-0.663787771192;AHR_ARNT_ARNT2:-0.664163717773;ATF5_CREB3:-0.672048851322;MYFfamily:-0.696768048013;LMO2:-0.698162813458;ELK1,4_GABP{A,B1}:-0.6983033086;NHLH1,2:-0.706157996891;CREB1:-0.706730371356;ALX1:-0.715808264001;NFIL3:-0.717866737772;ZNF384:-0.758656274736;ZFP161:-0.767762904915;SOX2:-0.787295528773;HBP1_HMGB_SSRP1_UBTF:-0.789760706959;NRF1:-0.802867739963;EP300:-0.805691607971;PITX1..3:-0.811067927027;SMAD1..7,9:-0.816093131224;GATA4:-0.830185105916;HOX{A4,D4}:-0.859160178589;IRF7:-0.866243765504;ZEB1:-0.872854026589;ADNP_IRX_SIX_ZHX:-0.936870676384;FOX{I1,J2}:-0.951479102065;RORA:-0.963788820153;BREu{core}:-0.970746565629;NKX3-1:-0.974524046913;MYOD1:-0.980284957666;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01390080512;NKX6-1,2:-1.01777631111;RBPJ:-1.03170202597;FOXQ1:-1.0653528127;TLX2:-1.09346439886;PDX1:-1.09942653748;FOX{D1,D2}:-1.19139812716;ATF2:-1.23083024342;ATF4:-1.23498929023;FOXP3:-1.25015397484;STAT1,3:-1.5033953596;BPTF:-1.53599061932;HMGA1,2:-1.56167261322;EVI1:-1.61337032772;ZBTB16:-1.6287458623;IKZF2:-1.64868240304;SREBF1,2:-1.66904713576;PAX4:-1.77433245149;FOXN1:-1.83656949927;CDX1,2,4:-1.90683830211;FOXP1:-2.05678304904;FOXD3:-2.12797111309;TEF:-2.37861532231 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11420-118F7;search_select_hide=table117:FF:11420-118F7 | |||
}} | }} | ||
Latest revision as of 17:59, 4 June 2020
| Name: | Hair Follicle Dermal Papilla Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12030 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12030
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12030
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.765 |
| 10 | 10 | 0.857 |
| 100 | 100 | 0.933 |
| 101 | 101 | 0.227 |
| 102 | 102 | 0.827 |
| 103 | 103 | 0.807 |
| 104 | 104 | 0.544 |
| 105 | 105 | 0.105 |
| 106 | 106 | 0.0292 |
| 107 | 107 | 0.0129 |
| 108 | 108 | 0.909 |
| 109 | 109 | 0.0284 |
| 11 | 11 | 0.0803 |
| 110 | 110 | 0.166 |
| 111 | 111 | 0.624 |
| 112 | 112 | 0.671 |
| 113 | 113 | 0.183 |
| 114 | 114 | 0.333 |
| 115 | 115 | 0.856 |
| 116 | 116 | 0.149 |
| 117 | 117 | 0.476 |
| 118 | 118 | 0.898 |
| 119 | 119 | 0.156 |
| 12 | 12 | 0.161 |
| 120 | 120 | 0.264 |
| 121 | 121 | 0.375 |
| 122 | 122 | 0.44 |
| 123 | 123 | 0.411 |
| 124 | 124 | 0.481 |
| 125 | 125 | 0.868 |
| 126 | 126 | 0.438 |
| 127 | 127 | 0.108 |
| 128 | 128 | 0.191 |
| 129 | 129 | 0.706 |
| 13 | 13 | 0.788 |
| 130 | 130 | 0.00998 |
| 131 | 131 | 0.979 |
| 132 | 132 | 0.939 |
| 133 | 133 | 0.785 |
| 134 | 134 | 0.73 |
| 135 | 135 | 0.161 |
| 136 | 136 | 0.509 |
| 137 | 137 | 0.493 |
| 138 | 138 | 0.815 |
| 139 | 139 | 0.522 |
| 14 | 14 | 0.575 |
| 140 | 140 | 0.975 |
| 141 | 141 | 0.663 |
| 142 | 142 | 0.00706 |
| 143 | 143 | 0.0255 |
| 144 | 144 | 0.891 |
| 145 | 145 | 0.179 |
| 146 | 146 | 0.0444 |
| 147 | 147 | 0.244 |
| 148 | 148 | 0.34 |
| 149 | 149 | 0.202 |
| 15 | 15 | 0.567 |
| 150 | 150 | 0.195 |
| 151 | 151 | 0.55 |
| 152 | 152 | 0.0431 |
| 153 | 153 | 0.354 |
| 154 | 154 | 0.64 |
| 155 | 155 | 0.322 |
| 156 | 156 | 0.322 |
| 157 | 157 | 0.998 |
| 158 | 158 | 0.0975 |
| 159 | 159 | 0.506 |
| 16 | 16 | 0.209 |
| 160 | 160 | 0.0563 |
| 161 | 161 | 0.635 |
| 162 | 162 | 0.0209 |
| 163 | 163 | 0.467 |
| 164 | 164 | 0.622 |
| 165 | 165 | 0.222 |
| 166 | 166 | 0.138 |
| 167 | 167 | 0.487 |
| 168 | 168 | 0.774 |
| 169 | 169 | 0.0371 |
| 17 | 17 | 0.147 |
| 18 | 18 | 0.262 |
| 19 | 19 | 0.0554 |
| 2 | 2 | 0.277 |
| 20 | 20 | 0.287 |
| 21 | 21 | 0.738 |
| 22 | 22 | 0.0824 |
| 23 | 23 | 0.201 |
| 24 | 24 | 0.179 |
| 25 | 25 | 0.597 |
| 26 | 26 | 0.00315 |
| 27 | 27 | 0.293 |
| 28 | 28 | 0.263 |
| 29 | 29 | 0.767 |
| 3 | 3 | 0.634 |
| 30 | 30 | 0.168 |
| 31 | 31 | 0.511 |
| 32 | 32 | 0.0124 |
| 33 | 33 | 0.25 |
| 34 | 34 | 0.29 |
| 35 | 35 | 0.854 |
| 36 | 36 | 0.831 |
| 37 | 37 | 0.227 |
| 38 | 38 | 0.643 |
| 39 | 39 | 0.56 |
| 4 | 4 | 0.686 |
| 40 | 40 | 0.0493 |
| 41 | 41 | 0.693 |
| 42 | 42 | 0.752 |
| 43 | 43 | 0.132 |
| 44 | 44 | 0.476 |
| 45 | 45 | 0.237 |
| 46 | 46 | 0.0617 |
| 47 | 47 | 0.501 |
| 48 | 48 | 0.167 |
| 49 | 49 | 0.263 |
| 5 | 5 | 0.863 |
| 50 | 50 | 0.365 |
| 51 | 51 | 0.452 |
| 52 | 52 | 0.205 |
| 53 | 53 | 0.962 |
| 54 | 54 | 0.659 |
| 55 | 55 | 0.672 |
| 56 | 56 | 0.511 |
| 57 | 57 | 0.339 |
| 58 | 58 | 0.959 |
| 59 | 59 | 0.0246 |
| 6 | 6 | 0.988 |
| 60 | 60 | 0.332 |
| 61 | 61 | 0.425 |
| 62 | 62 | 0.59 |
| 63 | 63 | 0.217 |
| 64 | 64 | 0.313 |
| 65 | 65 | 0.167 |
| 66 | 66 | 0.279 |
| 67 | 67 | 0.753 |
| 68 | 68 | 0.403 |
| 69 | 69 | 0.106 |
| 7 | 7 | 0.851 |
| 70 | 70 | 0.876 |
| 71 | 71 | 0.112 |
| 72 | 72 | 0.955 |
| 73 | 73 | 0.0377 |
| 74 | 74 | 0.743 |
| 75 | 75 | 0.863 |
| 76 | 76 | 0.55 |
| 77 | 77 | 0.0116 |
| 78 | 78 | 0.652 |
| 79 | 79 | 0.442 |
| 8 | 8 | 0.0833 |
| 80 | 80 | 0.799 |
| 81 | 81 | 0.675 |
| 82 | 82 | 0.496 |
| 83 | 83 | 0.448 |
| 84 | 84 | 0.203 |
| 85 | 85 | 0.119 |
| 86 | 86 | 0.842 |
| 87 | 87 | 0.0324 |
| 88 | 88 | 0.191 |
| 89 | 89 | 0.515 |
| 9 | 9 | 0.0963 |
| 90 | 90 | 0.132 |
| 91 | 91 | 0.0487 |
| 92 | 92 | 0.887 |
| 93 | 93 | 0.784 |
| 94 | 94 | 0.387 |
| 95 | 95 | 0.122 |
| 96 | 96 | 0.348 |
| 97 | 97 | 0.412 |
| 98 | 98 | 0.131 |
| 99 | 99 | 0.0109 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12030
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000071 human hair follicle dermal papilla cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002559 (hair follicle cell)
0000346 (hair follicle dermal papilla cell)
1000428 (stem cell of epidermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0000412 (dermal papilla)
0002067 (dermis)
0001992 (papillary layer of dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000071 (human hair follicle dermal papilla cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
