FF:11269-116G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004983 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004983 | ||
|accession_numbers=CAGE;DRX008254;DRR009126;DRZ000551;DRZ001936;DRZ011901;DRZ013286 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036992;DRR041358;DRZ007000 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11269-116G9 | |id=FF:11269-116G9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |||
|library_id=CNhs12499 | |||
|library_id_phase_based=2:CNhs12499 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11269 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ACAGTG.11269 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11269 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ACAGTG.11269 | |||
|name=Fibroblast - Dermal, donor1 | |name=Fibroblast - Dermal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12499,LSID916,release011,COMPLETED | |profile_hcage=CNhs12499,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0423312101051711,0,-0.0666904993666931,0.369776459236863,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255052715937175,0,0,0,0,0,0.656573993475751,0,0,0.410773890829324,0,0,0,0,0,0,0,0,0,0,0,0,-0.0869063069754052,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.408375726285602,0,0,0.117986819981215,0.311383365042997,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0399755290426465,0,0,0,0,0,0,0,0,0,0,-0.123541418992891,0.185956256089502,0,0,0,0,-0.0980353512377064,0.0906876237343175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067955632481557,0,0,0,-0.0359277677180412,-0.217655898689459,0,0,0.0466834025758724,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA106-R10a | |rna_catalog_number=CA106-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G9 | |rna_tube_id=116G9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.ACAGTG | |||
|sample_age=71 | |sample_age=71 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.51210654244355e-230!GO:0005737;cytoplasm;7.91628602118987e-201!GO:0043231;intracellular membrane-bound organelle;1.28964641388468e-179!GO:0043227;membrane-bound organelle;2.61511379684982e-179!GO:0043226;organelle;2.26760410963576e-178!GO:0043229;intracellular organelle;4.80353758015612e-178!GO:0044444;cytoplasmic part;1.4085725805567e-153!GO:0044422;organelle part;1.55368690707926e-140!GO:0044446;intracellular organelle part;3.78898464134944e-139!GO:0032991;macromolecular complex;1.44067219556448e-98!GO:0030529;ribonucleoprotein complex;5.31534437999463e-94!GO:0044237;cellular metabolic process;1.99989072666103e-88!GO:0044238;primary metabolic process;2.42606212720256e-87!GO:0005739;mitochondrion;1.9041961150896e-86!GO:0043233;organelle lumen;1.05340893137719e-77!GO:0031974;membrane-enclosed lumen;1.05340893137719e-77!GO:0043170;macromolecule metabolic process;5.9402009192627e-75!GO:0003723;RNA binding;1.42359920380465e-69!GO:0044428;nuclear part;1.6049279187451e-67!GO:0005515;protein binding;1.47167614378911e-63!GO:0005840;ribosome;6.8356936777271e-60!GO:0031090;organelle membrane;7.93010397250056e-58!GO:0044429;mitochondrial part;7.44760399098914e-57!GO:0005634;nucleus;2.236317777261e-56!GO:0006412;translation;3.18254414616623e-56!GO:0009058;biosynthetic process;3.92432469317587e-54!GO:0019538;protein metabolic process;2.60396323872782e-53!GO:0003735;structural constituent of ribosome;1.99989275760367e-52!GO:0006396;RNA processing;3.33620884199872e-50!GO:0044249;cellular biosynthetic process;8.20918186776044e-50!GO:0044260;cellular macromolecule metabolic process;4.53220070028284e-48!GO:0043234;protein complex;1.78368493128773e-47!GO:0044267;cellular protein metabolic process;3.17469238106034e-47!GO:0031967;organelle envelope;5.52449039078577e-47!GO:0031975;envelope;1.43185844843662e-46!GO:0033279;ribosomal subunit;6.69728648896973e-46!GO:0009059;macromolecule biosynthetic process;9.85385564180326e-46!GO:0005829;cytosol;2.22665544361624e-44!GO:0031981;nuclear lumen;2.72642656669516e-42!GO:0015031;protein transport;1.0758465101433e-41!GO:0016043;cellular component organization and biogenesis;1.91153660003422e-41!GO:0033036;macromolecule localization;8.90261701416893e-41!GO:0045184;establishment of protein localization;2.35627590336527e-38!GO:0008104;protein localization;1.16146231830507e-37!GO:0005740;mitochondrial envelope;7.14479799601308e-36!GO:0016071;mRNA metabolic process;1.14919626920176e-35!GO:0043283;biopolymer metabolic process;2.58335966416288e-35!GO:0010467;gene expression;2.85122139865849e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.58526190674667e-34!GO:0008380;RNA splicing;1.33314947411394e-33!GO:0031966;mitochondrial membrane;1.47053212940275e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.54597382568459e-33!GO:0046907;intracellular transport;9.27556545500875e-32!GO:0065003;macromolecular complex assembly;1.36210647906123e-31!GO:0019866;organelle inner membrane;4.30021080963923e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.21060739810544e-30!GO:0006397;mRNA processing;1.9157322057153e-30!GO:0005743;mitochondrial inner membrane;8.57220293164495e-30!GO:0022607;cellular component assembly;2.930521388606e-28!GO:0006996;organelle organization and biogenesis;1.38624975293128e-27!GO:0006886;intracellular protein transport;1.38862886682246e-27!GO:0044445;cytosolic part;1.33727390098045e-26!GO:0043228;non-membrane-bound organelle;4.20102117273223e-26!GO:0043232;intracellular non-membrane-bound organelle;4.20102117273223e-26!GO:0031980;mitochondrial lumen;5.28004979984683e-25!GO:0005759;mitochondrial matrix;5.28004979984683e-25!GO:0005654;nucleoplasm;7.87250355281364e-25!GO:0006119;oxidative phosphorylation;2.21954433263891e-24!GO:0015934;large ribosomal subunit;6.12344186325098e-24!GO:0044455;mitochondrial membrane part;1.86104328806136e-23!GO:0005681;spliceosome;2.1334433509174e-23!GO:0015935;small ribosomal subunit;5.16147223331777e-23!GO:0012505;endomembrane system;5.79088014887146e-23!GO:0006457;protein folding;5.21835683372159e-21!GO:0051186;cofactor metabolic process;1.72250971074187e-20!GO:0005783;endoplasmic reticulum;2.60764051246695e-20!GO:0006259;DNA metabolic process;3.08284555831452e-20!GO:0044451;nucleoplasm part;3.2822645032458e-20!GO:0000166;nucleotide binding;4.99409327240613e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.82572690202256e-20!GO:0016462;pyrophosphatase activity;1.06399601816706e-19!GO:0005730;nucleolus;1.33838562156441e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.53803708191426e-19!GO:0051649;establishment of cellular localization;1.90231550076374e-19!GO:0051641;cellular localization;1.97994980306769e-19!GO:0005746;mitochondrial respiratory chain;2.06904961662337e-19!GO:0022618;protein-RNA complex assembly;3.09663878882824e-19!GO:0048770;pigment granule;7.01079272789404e-19!GO:0042470;melanosome;7.01079272789404e-19!GO:0017111;nucleoside-triphosphatase activity;9.33148756620957e-19!GO:0044432;endoplasmic reticulum part;6.42648900114573e-18!GO:0016874;ligase activity;1.05485008701351e-17!GO:0043285;biopolymer catabolic process;1.5940730241179e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.01161129750636e-17!GO:0044248;cellular catabolic process;5.7810586249821e-17!GO:0044265;cellular macromolecule catabolic process;5.7810586249821e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.34462171116678e-17!GO:0008135;translation factor activity, nucleic acid binding;8.020617775365e-17!GO:0005761;mitochondrial ribosome;8.87405050346734e-17!GO:0000313;organellar ribosome;8.87405050346734e-17!GO:0009057;macromolecule catabolic process;1.32312194712611e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.80342884556709e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.0925915456005e-16!GO:0003954;NADH dehydrogenase activity;2.0925915456005e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.0925915456005e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.37917115946678e-16!GO:0003676;nucleic acid binding;3.48380907721547e-16!GO:0042254;ribosome biogenesis and assembly;4.93683051310791e-16!GO:0005794;Golgi apparatus;7.43328983616391e-16!GO:0006732;coenzyme metabolic process;1.03566354213942e-15!GO:0006512;ubiquitin cycle;1.36535484658483e-15!GO:0006605;protein targeting;5.85270694055121e-15!GO:0042775;organelle ATP synthesis coupled electron transport;7.75901112610028e-15!GO:0042773;ATP synthesis coupled electron transport;7.75901112610028e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.23471502462069e-14!GO:0045271;respiratory chain complex I;1.23471502462069e-14!GO:0005747;mitochondrial respiratory chain complex I;1.23471502462069e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.23471502462069e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.58332420265501e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.98780867223415e-14!GO:0019941;modification-dependent protein catabolic process;2.36418208327279e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.36418208327279e-14!GO:0044257;cellular protein catabolic process;2.56425834405267e-14!GO:0008134;transcription factor binding;3.15809897396212e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.66464569673872e-14!GO:0017076;purine nucleotide binding;4.71546405580658e-14!GO:0030163;protein catabolic process;5.62661472056049e-14!GO:0051082;unfolded protein binding;6.74693071855753e-14!GO:0003743;translation initiation factor activity;1.37517326652669e-13!GO:0032553;ribonucleotide binding;2.80026599863453e-13!GO:0032555;purine ribonucleotide binding;2.80026599863453e-13!GO:0007049;cell cycle;3.06999087806077e-13!GO:0006399;tRNA metabolic process;3.96457902934653e-13!GO:0006413;translational initiation;4.96267491503436e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.53913738232713e-13!GO:0048193;Golgi vesicle transport;5.67593245531405e-13!GO:0016070;RNA metabolic process;1.30887945031844e-12!GO:0005793;ER-Golgi intermediate compartment;1.39283533749493e-12!GO:0005789;endoplasmic reticulum membrane;1.54831600861978e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.58145408365832e-12!GO:0000375;RNA splicing, via transesterification reactions;1.58145408365832e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.58145408365832e-12!GO:0005635;nuclear envelope;2.04315219993702e-12!GO:0009259;ribonucleotide metabolic process;3.11808392502924e-12!GO:0009055;electron carrier activity;3.91123946747638e-12!GO:0006163;purine nucleotide metabolic process;5.50515523055984e-12!GO:0043412;biopolymer modification;5.64540460483899e-12!GO:0016192;vesicle-mediated transport;1.03521849789425e-11!GO:0031965;nuclear membrane;1.51495367856104e-11!GO:0030554;adenyl nucleotide binding;1.7899286354067e-11!GO:0009150;purine ribonucleotide metabolic process;1.91248855030187e-11!GO:0016491;oxidoreductase activity;3.47408678787157e-11!GO:0006974;response to DNA damage stimulus;3.65200572124214e-11!GO:0006446;regulation of translational initiation;4.92929536037644e-11!GO:0005524;ATP binding;4.98328039786255e-11!GO:0006164;purine nucleotide biosynthetic process;5.0370682986084e-11!GO:0009056;catabolic process;5.17118306024895e-11!GO:0009260;ribonucleotide biosynthetic process;7.47128785914895e-11!GO:0032559;adenyl ribonucleotide binding;7.4853955988536e-11!GO:0044453;nuclear membrane part;1.26032344679706e-10!GO:0006364;rRNA processing;1.32064973550408e-10!GO:0016604;nuclear body;1.41421560174805e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.70324953773254e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.98075107151611e-10!GO:0051188;cofactor biosynthetic process;2.03481104169386e-10!GO:0016072;rRNA metabolic process;2.34932424421784e-10!GO:0006464;protein modification process;3.15822688941575e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.45309220560163e-10!GO:0016887;ATPase activity;4.00633371624088e-10!GO:0009199;ribonucleoside triphosphate metabolic process;4.26010406869328e-10!GO:0022402;cell cycle process;4.4290166642873e-10!GO:0009141;nucleoside triphosphate metabolic process;4.92017625528075e-10!GO:0042623;ATPase activity, coupled;5.11690733677797e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.42842624362145e-10!GO:0009144;purine nucleoside triphosphate metabolic process;7.42842624362145e-10!GO:0006461;protein complex assembly;1.38179456656269e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43156167926631e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.79034336624877e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.79034336624877e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.79034336624877e-09!GO:0000278;mitotic cell cycle;2.66641579892998e-09!GO:0009060;aerobic respiration;2.7104702922896e-09!GO:0006913;nucleocytoplasmic transport;2.81698174311664e-09!GO:0043038;amino acid activation;3.09962149928576e-09!GO:0006418;tRNA aminoacylation for protein translation;3.09962149928576e-09!GO:0043039;tRNA aminoacylation;3.09962149928576e-09!GO:0045333;cellular respiration;3.25711826268498e-09!GO:0008565;protein transporter activity;3.95391511499506e-09!GO:0015078;hydrogen ion transmembrane transporter activity;4.64537230362385e-09!GO:0012501;programmed cell death;5.00552342746577e-09!GO:0009117;nucleotide metabolic process;5.02395062243862e-09!GO:0065002;intracellular protein transport across a membrane;5.15135122008398e-09!GO:0006281;DNA repair;5.80505372598264e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.83234499867376e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.83234499867376e-09!GO:0051169;nuclear transport;5.89254879843388e-09!GO:0003712;transcription cofactor activity;6.43754394332343e-09!GO:0005643;nuclear pore;6.87730008665435e-09!GO:0008639;small protein conjugating enzyme activity;7.30791913255289e-09!GO:0046034;ATP metabolic process;7.39338764560485e-09!GO:0015986;ATP synthesis coupled proton transport;7.79533691939911e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.79533691939911e-09!GO:0006915;apoptosis;7.8275424448153e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.00836977125767e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.00836977125767e-08!GO:0006091;generation of precursor metabolites and energy;1.32197670880077e-08!GO:0004842;ubiquitin-protein ligase activity;1.7435082292452e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.82441203851041e-08!GO:0007005;mitochondrion organization and biogenesis;1.99931857362459e-08!GO:0017038;protein import;2.2707269745121e-08!GO:0019829;cation-transporting ATPase activity;2.33746562164516e-08!GO:0005768;endosome;4.16667600924051e-08!GO:0043687;post-translational protein modification;4.2839327818955e-08!GO:0019787;small conjugating protein ligase activity;4.34439245740374e-08!GO:0009108;coenzyme biosynthetic process;4.51216526375983e-08!GO:0009719;response to endogenous stimulus;4.72344714580725e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.33571433956347e-08!GO:0008219;cell death;5.45415517104108e-08!GO:0016265;death;5.45415517104108e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.87251568926642e-08!GO:0030120;vesicle coat;5.94301724106341e-08!GO:0030662;coated vesicle membrane;5.94301724106341e-08!GO:0016607;nuclear speck;6.97175094084873e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;7.77803621530842e-08!GO:0008026;ATP-dependent helicase activity;8.20639938030825e-08!GO:0006754;ATP biosynthetic process;9.21845348934513e-08!GO:0006753;nucleoside phosphate metabolic process;9.21845348934513e-08!GO:0046930;pore complex;9.21845348934513e-08!GO:0004386;helicase activity;9.95727996193678e-08!GO:0005788;endoplasmic reticulum lumen;9.99577399757585e-08!GO:0044431;Golgi apparatus part;1.16449026288009e-07!GO:0051276;chromosome organization and biogenesis;1.18933182643462e-07!GO:0006099;tricarboxylic acid cycle;1.39689623782309e-07!GO:0046356;acetyl-CoA catabolic process;1.39689623782309e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.94352124244012e-07!GO:0016787;hydrolase activity;2.10400777441607e-07!GO:0006323;DNA packaging;2.37824819991613e-07!GO:0006260;DNA replication;2.44453462915424e-07!GO:0006084;acetyl-CoA metabolic process;2.54760504445167e-07!GO:0051187;cofactor catabolic process;3.29913032381702e-07!GO:0016881;acid-amino acid ligase activity;3.54321357965694e-07!GO:0050657;nucleic acid transport;3.84337866094804e-07!GO:0051236;establishment of RNA localization;3.84337866094804e-07!GO:0050658;RNA transport;3.84337866094804e-07!GO:0006403;RNA localization;3.88952941523493e-07!GO:0016740;transferase activity;4.09098539782616e-07!GO:0065004;protein-DNA complex assembly;4.26041802504797e-07!GO:0005694;chromosome;4.31655252521861e-07!GO:0003924;GTPase activity;4.79422230615946e-07!GO:0051246;regulation of protein metabolic process;4.89482815792302e-07!GO:0009109;coenzyme catabolic process;5.23568891248629e-07!GO:0000074;regulation of progression through cell cycle;5.37589915481664e-07!GO:0051726;regulation of cell cycle;5.55693253247716e-07!GO:0048475;coated membrane;5.58862569844821e-07!GO:0030117;membrane coat;5.58862569844821e-07!GO:0043566;structure-specific DNA binding;5.72860805623293e-07!GO:0016853;isomerase activity;5.91586554361721e-07!GO:0045259;proton-transporting ATP synthase complex;6.07309189518748e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.95351816104859e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.40439670864669e-07!GO:0044440;endosomal part;8.4726630676986e-07!GO:0010008;endosome membrane;8.4726630676986e-07!GO:0006752;group transfer coenzyme metabolic process;9.17559525241234e-07!GO:0005839;proteasome core complex (sensu Eukaryota);9.32380252089226e-07!GO:0005762;mitochondrial large ribosomal subunit;1.13506800647258e-06!GO:0000315;organellar large ribosomal subunit;1.13506800647258e-06!GO:0048523;negative regulation of cellular process;1.30335649467148e-06!GO:0003697;single-stranded DNA binding;1.57414439369681e-06!GO:0005770;late endosome;1.7985566766359e-06!GO:0000087;M phase of mitotic cell cycle;2.06113858239781e-06!GO:0008654;phospholipid biosynthetic process;2.53130380973221e-06!GO:0007067;mitosis;2.81833504283172e-06!GO:0005773;vacuole;3.03918768638145e-06!GO:0006366;transcription from RNA polymerase II promoter;3.28715280265803e-06!GO:0000139;Golgi membrane;3.28837348311569e-06!GO:0044427;chromosomal part;3.58968079111197e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.9822248359048e-06!GO:0016779;nucleotidyltransferase activity;3.9822248359048e-06!GO:0005667;transcription factor complex;4.72183322863979e-06!GO:0019867;outer membrane;5.31868824778458e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.41718754326112e-06!GO:0031968;organelle outer membrane;5.5359489802219e-06!GO:0022403;cell cycle phase;5.5977510287932e-06!GO:0006916;anti-apoptosis;5.5977510287932e-06!GO:0004298;threonine endopeptidase activity;7.60945605690897e-06!GO:0032446;protein modification by small protein conjugation;8.92683121588666e-06!GO:0051028;mRNA transport;1.00327640389501e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.01381437659519e-05!GO:0031988;membrane-bound vesicle;1.04028047194988e-05!GO:0000245;spliceosome assembly;1.04936108383045e-05!GO:0016567;protein ubiquitination;1.05093566773209e-05!GO:0006333;chromatin assembly or disassembly;1.1471768762202e-05!GO:0042981;regulation of apoptosis;1.48741290835074e-05!GO:0009165;nucleotide biosynthetic process;1.64945489841336e-05!GO:0000151;ubiquitin ligase complex;1.73460800169799e-05!GO:0043623;cellular protein complex assembly;1.75666213578626e-05!GO:0043067;regulation of programmed cell death;1.79673171301162e-05!GO:0051170;nuclear import;1.93138194917463e-05!GO:0008610;lipid biosynthetic process;1.93138194917463e-05!GO:0019843;rRNA binding;1.97391039139051e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.25167184516133e-05!GO:0005798;Golgi-associated vesicle;2.29902695453409e-05!GO:0006613;cotranslational protein targeting to membrane;2.34435824411842e-05!GO:0045454;cell redox homeostasis;2.34435824411842e-05!GO:0031982;vesicle;2.39150566960808e-05!GO:0048519;negative regulation of biological process;2.48873840801765e-05!GO:0003713;transcription coactivator activity;2.51702104243508e-05!GO:0005741;mitochondrial outer membrane;2.56029035033367e-05!GO:0016859;cis-trans isomerase activity;2.5752700008136e-05!GO:0000785;chromatin;2.59997158592112e-05!GO:0019752;carboxylic acid metabolic process;2.62345827640527e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.7184217378821e-05!GO:0031410;cytoplasmic vesicle;2.75766852705301e-05!GO:0031252;leading edge;2.76732104644942e-05!GO:0006082;organic acid metabolic process;2.93718724450569e-05!GO:0000323;lytic vacuole;3.13319920477078e-05!GO:0005764;lysosome;3.13319920477078e-05!GO:0005525;GTP binding;3.13366367110499e-05!GO:0008033;tRNA processing;3.38372815651422e-05!GO:0006606;protein import into nucleus;3.45606754880143e-05!GO:0000314;organellar small ribosomal subunit;3.5034705588253e-05!GO:0005763;mitochondrial small ribosomal subunit;3.5034705588253e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.96311923929318e-05!GO:0016126;sterol biosynthetic process;4.11815824227842e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.49862375997062e-05!GO:0003724;RNA helicase activity;4.52238474165419e-05!GO:0003899;DNA-directed RNA polymerase activity;4.67817688793828e-05!GO:0005048;signal sequence binding;4.80800875155821e-05!GO:0043069;negative regulation of programmed cell death;5.15680049411791e-05!GO:0043021;ribonucleoprotein binding;5.23533668047311e-05!GO:0043066;negative regulation of apoptosis;6.05908196069669e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.22290973521078e-05!GO:0051301;cell division;6.47837516580793e-05!GO:0051427;hormone receptor binding;7.34349439808954e-05!GO:0016568;chromatin modification;7.48756019379476e-05!GO:0030867;rough endoplasmic reticulum membrane;7.93980329849671e-05!GO:0005769;early endosome;9.31481312615144e-05!GO:0031324;negative regulation of cellular metabolic process;9.48518431137188e-05!GO:0016564;transcription repressor activity;9.63592265605366e-05!GO:0006793;phosphorus metabolic process;0.000106838662223944!GO:0006796;phosphate metabolic process;0.000106838662223944!GO:0019899;enzyme binding;0.000109012476753645!GO:0006626;protein targeting to mitochondrion;0.00011297445680188!GO:0033116;ER-Golgi intermediate compartment membrane;0.000122866130008096!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000129119064896974!GO:0046474;glycerophospholipid biosynthetic process;0.000129119064896974!GO:0050662;coenzyme binding;0.000145297699028653!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000146323691395082!GO:0035257;nuclear hormone receptor binding;0.0001489813731243!GO:0016563;transcription activator activity;0.000150740719908965!GO:0044452;nucleolar part;0.000151715540147595!GO:0006334;nucleosome assembly;0.000152045402370909!GO:0032561;guanyl ribonucleotide binding;0.000198976353903135!GO:0019001;guanyl nucleotide binding;0.000198976353903135!GO:0044262;cellular carbohydrate metabolic process;0.000208158702974376!GO:0000279;M phase;0.000238917528252851!GO:0031497;chromatin assembly;0.000242124685828986!GO:0016310;phosphorylation;0.000244195191717606!GO:0045786;negative regulation of progression through cell cycle;0.000249109402503064!GO:0005791;rough endoplasmic reticulum;0.000251036285440755!GO:0030133;transport vesicle;0.000251878424798003!GO:0005905;coated pit;0.000269574546942891!GO:0043681;protein import into mitochondrion;0.000278703799646716!GO:0005885;Arp2/3 protein complex;0.00028549137748173!GO:0005813;centrosome;0.000286485774619848!GO:0050794;regulation of cellular process;0.000308035527203594!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000315054686577052!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000322059769831522!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000372524676944985!GO:0015630;microtubule cytoskeleton;0.000390019476825797!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000395726190590213!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000397553817966342!GO:0006695;cholesterol biosynthetic process;0.000436492725747002!GO:0008250;oligosaccharyl transferase complex;0.000471532016029149!GO:0006383;transcription from RNA polymerase III promoter;0.00050068750630378!GO:0003714;transcription corepressor activity;0.00050510665858434!GO:0007006;mitochondrial membrane organization and biogenesis;0.000512581895348089!GO:0005815;microtubule organizing center;0.000512581895348089!GO:0043284;biopolymer biosynthetic process;0.000534902735154879!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000553305219868753!GO:0015399;primary active transmembrane transporter activity;0.000553305219868753!GO:0004576;oligosaccharyl transferase activity;0.000561048249052453!GO:0046467;membrane lipid biosynthetic process;0.000562474976561741!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000603454065866261!GO:0030880;RNA polymerase complex;0.000609465510295462!GO:0051252;regulation of RNA metabolic process;0.000612635738274778!GO:0030663;COPI coated vesicle membrane;0.000629177298358535!GO:0030126;COPI vesicle coat;0.000629177298358535!GO:0006118;electron transport;0.000650313034688492!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000663962952011547!GO:0004177;aminopeptidase activity;0.000664265850525558!GO:0006612;protein targeting to membrane;0.000691469235979983!GO:0000059;protein import into nucleus, docking;0.000760957329943046!GO:0006839;mitochondrial transport;0.000760957329943046!GO:0009892;negative regulation of metabolic process;0.000787098479265138!GO:0051920;peroxiredoxin activity;0.000792755301799043!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000834409927399247!GO:0043488;regulation of mRNA stability;0.000860504556136932!GO:0043487;regulation of RNA stability;0.000860504556136932!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000860504556136932!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000860504556136932!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000860504556136932!GO:0003729;mRNA binding;0.000874748963261332!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000900751585640229!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00090998844280663!GO:0008168;methyltransferase activity;0.000917477939531367!GO:0006414;translational elongation;0.000917571855256155!GO:0006401;RNA catabolic process;0.00095136517915425!GO:0008186;RNA-dependent ATPase activity;0.00096283523310011!GO:0046483;heterocycle metabolic process;0.000963146796421947!GO:0030036;actin cytoskeleton organization and biogenesis;0.000978329439160586!GO:0016741;transferase activity, transferring one-carbon groups;0.000995395860703177!GO:0042802;identical protein binding;0.00101826762834546!GO:0022890;inorganic cation transmembrane transporter activity;0.0010453606778922!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00109543675016907!GO:0015002;heme-copper terminal oxidase activity;0.00109543675016907!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00109543675016907!GO:0004129;cytochrome-c oxidase activity;0.00109543675016907!GO:0006520;amino acid metabolic process;0.00111710396756059!GO:0051789;response to protein stimulus;0.00116763205914166!GO:0006986;response to unfolded protein;0.00116763205914166!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00129168887610705!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00146803344968511!GO:0000428;DNA-directed RNA polymerase complex;0.00146803344968511!GO:0018196;peptidyl-asparagine modification;0.0014874192746382!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0014874192746382!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0014874192746382!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0014874192746382!GO:0051287;NAD binding;0.00151493147929921!GO:0016481;negative regulation of transcription;0.00151493147929921!GO:0051329;interphase of mitotic cell cycle;0.00153910685882156!GO:0048037;cofactor binding;0.00156710516506585!GO:0008361;regulation of cell size;0.0016555792741995!GO:0008632;apoptotic program;0.00167994579760241!GO:0030137;COPI-coated vesicle;0.00176224791472915!GO:0016044;membrane organization and biogenesis;0.00179988738087372!GO:0006402;mRNA catabolic process;0.0018818999613187!GO:0000049;tRNA binding;0.00192708933788289!GO:0006261;DNA-dependent DNA replication;0.00193669182615118!GO:0046489;phosphoinositide biosynthetic process;0.00202791765224334!GO:0003690;double-stranded DNA binding;0.00221578410063575!GO:0051540;metal cluster binding;0.002259194685251!GO:0051536;iron-sulfur cluster binding;0.002259194685251!GO:0004004;ATP-dependent RNA helicase activity;0.00240917415729056!GO:0016049;cell growth;0.00241046269891675!GO:0031072;heat shock protein binding;0.00254899987017124!GO:0006891;intra-Golgi vesicle-mediated transport;0.00257803536141566!GO:0051087;chaperone binding;0.0027393025493298!GO:0008180;signalosome;0.00275759598375607!GO:0001558;regulation of cell growth;0.0027769216047667!GO:0051168;nuclear export;0.0027769216047667!GO:0048500;signal recognition particle;0.00282800996266334!GO:0015992;proton transport;0.00303752828092956!GO:0006352;transcription initiation;0.00328293795905406!GO:0030658;transport vesicle membrane;0.00328293795905406!GO:0006818;hydrogen transport;0.00334492053058646!GO:0006740;NADPH regeneration;0.0035831161650069!GO:0006098;pentose-phosphate shunt;0.0035831161650069!GO:0030132;clathrin coat of coated pit;0.00362671409121005!GO:0006778;porphyrin metabolic process;0.00373189278520018!GO:0033013;tetrapyrrole metabolic process;0.00373189278520018!GO:0006595;polyamine metabolic process;0.00374119905100623!GO:0051539;4 iron, 4 sulfur cluster binding;0.00387211011970072!GO:0043492;ATPase activity, coupled to movement of substances;0.00393219938279976!GO:0003684;damaged DNA binding;0.00417703392349711!GO:0016407;acetyltransferase activity;0.00426517649896555!GO:0030029;actin filament-based process;0.00457428771197658!GO:0031902;late endosome membrane;0.00468098155247709!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00472304483793473!GO:0035258;steroid hormone receptor binding;0.00474950462131348!GO:0051325;interphase;0.00476861958779317!GO:0008312;7S RNA binding;0.00506928559688259!GO:0005684;U2-dependent spliceosome;0.00521533509954216!GO:0030134;ER to Golgi transport vesicle;0.0052884301763566!GO:0048522;positive regulation of cellular process;0.0052884301763566!GO:0007010;cytoskeleton organization and biogenesis;0.00532108942673638!GO:0030127;COPII vesicle coat;0.00552942962734301!GO:0012507;ER to Golgi transport vesicle membrane;0.00552942962734301!GO:0006289;nucleotide-excision repair;0.00559013801367078!GO:0007243;protein kinase cascade;0.00560152818811192!GO:0008139;nuclear localization sequence binding;0.00581446947477052!GO:0007033;vacuole organization and biogenesis;0.00598557566623502!GO:0022408;negative regulation of cell-cell adhesion;0.00622577769065837!GO:0065009;regulation of a molecular function;0.00641799085439722!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00643478294017266!GO:0045047;protein targeting to ER;0.00643478294017266!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00652483083871694!GO:0006807;nitrogen compound metabolic process;0.00663375758227867!GO:0048487;beta-tubulin binding;0.00666505061594788!GO:0009451;RNA modification;0.00666505061594788!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00666505061594788!GO:0004527;exonuclease activity;0.00680785211623319!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00688160538416714!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0070485270200931!GO:0006733;oxidoreduction coenzyme metabolic process;0.00707768567965187!GO:0016197;endosome transport;0.00722590472678819!GO:0017166;vinculin binding;0.00723440553891516!GO:0030041;actin filament polymerization;0.00733207837056223!GO:0006979;response to oxidative stress;0.007399255026289!GO:0007040;lysosome organization and biogenesis;0.00763984859484911!GO:0006650;glycerophospholipid metabolic process;0.00763984859484911!GO:0043022;ribosome binding;0.00776466963713675!GO:0006779;porphyrin biosynthetic process;0.00776466963713675!GO:0033014;tetrapyrrole biosynthetic process;0.00776466963713675!GO:0016272;prefoldin complex;0.0079263874049119!GO:0016408;C-acyltransferase activity;0.00800297268546548!GO:0009308;amine metabolic process;0.00808530751328404!GO:0004518;nuclease activity;0.00815850296684918!GO:0030145;manganese ion binding;0.00815850296684918!GO:0030660;Golgi-associated vesicle membrane;0.00835662998745171!GO:0030176;integral to endoplasmic reticulum membrane;0.0084637476155087!GO:0030118;clathrin coat;0.00862829141424585!GO:0009112;nucleobase metabolic process;0.00866265279220796!GO:0008047;enzyme activator activity;0.0087174521246907!GO:0030027;lamellipodium;0.00890483574343367!GO:0003711;transcription elongation regulator activity;0.0092992814373667!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0093825468183213!GO:0000082;G1/S transition of mitotic cell cycle;0.00941353182408067!GO:0001953;negative regulation of cell-matrix adhesion;0.00942300607325269!GO:0003746;translation elongation factor activity;0.00943322788969116!GO:0016363;nuclear matrix;0.00946239400245751!GO:0000339;RNA cap binding;0.00965716557263816!GO:0005869;dynactin complex;0.0099530453899184!GO:0030521;androgen receptor signaling pathway;0.0100261945943209!GO:0008652;amino acid biosynthetic process;0.0103885278121398!GO:0030032;lamellipodium biogenesis;0.0106717569557372!GO:0033673;negative regulation of kinase activity;0.0109023916272702!GO:0006469;negative regulation of protein kinase activity;0.0109023916272702!GO:0005096;GTPase activator activity;0.0109148022619967!GO:0005758;mitochondrial intermembrane space;0.0109299442504609!GO:0031901;early endosome membrane;0.0109380778773434!GO:0007034;vacuolar transport;0.0110999275736178!GO:0016251;general RNA polymerase II transcription factor activity;0.0111005628157845!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0113465108040564!GO:0005832;chaperonin-containing T-complex;0.0114092209003804!GO:0006144;purine base metabolic process;0.0114168150528263!GO:0005819;spindle;0.0117880407613429!GO:0009116;nucleoside metabolic process;0.0117916282072785!GO:0000096;sulfur amino acid metabolic process;0.0118141400248511!GO:0007050;cell cycle arrest;0.0118345976318768!GO:0006497;protein amino acid lipidation;0.0119829295237519!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0119829295237519!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0119829295237519!GO:0005774;vacuolar membrane;0.0120876711737838!GO:0051348;negative regulation of transferase activity;0.0121038336796156!GO:0042168;heme metabolic process;0.0121415563545512!GO:0031625;ubiquitin protein ligase binding;0.0121850747484327!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0125939826945172!GO:0042158;lipoprotein biosynthetic process;0.0126884117315034!GO:0006007;glucose catabolic process;0.012760105144184!GO:0016125;sterol metabolic process;0.0130083893163756!GO:0003678;DNA helicase activity;0.0135344628402175!GO:0031529;ruffle organization and biogenesis;0.0137468455493957!GO:0031970;organelle envelope lumen;0.0138072583208623!GO:0007264;small GTPase mediated signal transduction;0.0138432242008443!GO:0001726;ruffle;0.0139164578606171!GO:0048471;perinuclear region of cytoplasm;0.014434368490294!GO:0050789;regulation of biological process;0.0146596782345052!GO:0016860;intramolecular oxidoreductase activity;0.0146596782345052!GO:0009303;rRNA transcription;0.0149473233192341!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.015188269813107!GO:0030984;kininogen binding;0.0152672902857644!GO:0004213;cathepsin B activity;0.0152672902857644!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.015368387591095!GO:0007021;tubulin folding;0.0156798418705198!GO:0006302;double-strand break repair;0.0157885970305906!GO:0000075;cell cycle checkpoint;0.0158279032365611!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0176814691538934!GO:0051537;2 iron, 2 sulfur cluster binding;0.0178162449904842!GO:0006739;NADP metabolic process;0.0180499572736265!GO:0006506;GPI anchor biosynthetic process;0.018125075435379!GO:0006519;amino acid and derivative metabolic process;0.018125075435379!GO:0008243;plasminogen activator activity;0.0182921333473254!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0183337902649806!GO:0048144;fibroblast proliferation;0.0183364672946987!GO:0048145;regulation of fibroblast proliferation;0.0183364672946987!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0184198292538029!GO:0031124;mRNA 3'-end processing;0.0185359135030822!GO:0030125;clathrin vesicle coat;0.0187240776001942!GO:0030665;clathrin coated vesicle membrane;0.0187240776001942!GO:0030833;regulation of actin filament polymerization;0.0190934000605352!GO:0006611;protein export from nucleus;0.0192214037852992!GO:0006769;nicotinamide metabolic process;0.0196661499570332!GO:0030031;cell projection biogenesis;0.0196661499570332!GO:0030518;steroid hormone receptor signaling pathway;0.0199594395070904!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0203147867626057!GO:0006767;water-soluble vitamin metabolic process;0.0205686885969386!GO:0050681;androgen receptor binding;0.0205686885969386!GO:0032984;macromolecular complex disassembly;0.0206543197287975!GO:0045941;positive regulation of transcription;0.0213961830666774!GO:0009081;branched chain family amino acid metabolic process;0.0214281051537104!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0215153838959675!GO:0035035;histone acetyltransferase binding;0.0216432494637107!GO:0008154;actin polymerization and/or depolymerization;0.0217366530304477!GO:0015036;disulfide oxidoreductase activity;0.0219463826275507!GO:0006505;GPI anchor metabolic process;0.0224624377786744!GO:0032508;DNA duplex unwinding;0.0224827618593639!GO:0032392;DNA geometric change;0.0224827618593639!GO:0005100;Rho GTPase activator activity;0.0233289660315764!GO:0006509;membrane protein ectodomain proteolysis;0.0234242621946971!GO:0033619;membrane protein proteolysis;0.0234242621946971!GO:0009967;positive regulation of signal transduction;0.0234242621946971!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0235140465730353!GO:0001952;regulation of cell-matrix adhesion;0.0236088086962402!GO:0006220;pyrimidine nucleotide metabolic process;0.0238498825318021!GO:0030659;cytoplasmic vesicle membrane;0.0239123097567597!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0240517170970486!GO:0006066;alcohol metabolic process;0.0242127714236732!GO:0033559;unsaturated fatty acid metabolic process;0.0242169551206739!GO:0006636;unsaturated fatty acid biosynthetic process;0.0242169551206739!GO:0048146;positive regulation of fibroblast proliferation;0.0245342084854685!GO:0044437;vacuolar part;0.0250958383185554!GO:0000209;protein polyubiquitination;0.02545285129614!GO:0044255;cellular lipid metabolic process;0.0254734371226113!GO:0006783;heme biosynthetic process;0.0255410098324349!GO:0005777;peroxisome;0.0256228610364462!GO:0042579;microbody;0.0256228610364462!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0256650020611513!GO:0043189;H4/H2A histone acetyltransferase complex;0.0258828313041034!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0258828313041034!GO:0010257;NADH dehydrogenase complex assembly;0.0258828313041034!GO:0033108;mitochondrial respiratory chain complex assembly;0.0258828313041034!GO:0015631;tubulin binding;0.0261684361774155!GO:0051128;regulation of cellular component organization and biogenesis;0.0262032849660675!GO:0051052;regulation of DNA metabolic process;0.0265033782391983!GO:0000178;exosome (RNase complex);0.0265033782391983!GO:0005669;transcription factor TFIID complex;0.0265461930077644!GO:0030508;thiol-disulfide exchange intermediate activity;0.0265501901551779!GO:0008538;proteasome activator activity;0.0265501901551779!GO:0008637;apoptotic mitochondrial changes;0.0266933390139412!GO:0006950;response to stress;0.026748005747995!GO:0005862;muscle thin filament tropomyosin;0.0268035772192908!GO:0050178;phenylpyruvate tautomerase activity;0.0269500685206922!GO:0004532;exoribonuclease activity;0.0269500685206922!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0269500685206922!GO:0000786;nucleosome;0.027185546981031!GO:0045045;secretory pathway;0.0280071134461228!GO:0000287;magnesium ion binding;0.0282825571640986!GO:0040008;regulation of growth;0.0290158343309744!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0290158343309744!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0290158343309744!GO:0030119;AP-type membrane coat adaptor complex;0.0290993988334077!GO:0045893;positive regulation of transcription, DNA-dependent;0.029656852467343!GO:0035267;NuA4 histone acetyltransferase complex;0.029903092188321!GO:0008408;3'-5' exonuclease activity;0.029903092188321!GO:0005637;nuclear inner membrane;0.0303017095688863!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0304798568210111!GO:0003756;protein disulfide isomerase activity;0.030520495528196!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.030520495528196!GO:0008092;cytoskeletal protein binding;0.0305464288955791!GO:0007041;lysosomal transport;0.0309628004659467!GO:0043241;protein complex disassembly;0.0312259764933497!GO:0008415;acyltransferase activity;0.0316787808781372!GO:0044438;microbody part;0.0316787808781372!GO:0044439;peroxisomal part;0.0316787808781372!GO:0031272;regulation of pseudopodium formation;0.0316787808781372!GO:0031269;pseudopodium formation;0.0316787808781372!GO:0031344;regulation of cell projection organization and biogenesis;0.0316787808781372!GO:0031268;pseudopodium organization and biogenesis;0.0316787808781372!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0316787808781372!GO:0031274;positive regulation of pseudopodium formation;0.0316787808781372!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0322098964405522!GO:0004722;protein serine/threonine phosphatase activity;0.032493421604177!GO:0046128;purine ribonucleoside metabolic process;0.032493421604177!GO:0042278;purine nucleoside metabolic process;0.032493421604177!GO:0043624;cellular protein complex disassembly;0.032680071564456!GO:0008299;isoprenoid biosynthetic process;0.0331878520417169!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0333252475541184!GO:0033043;regulation of organelle organization and biogenesis;0.0333252475541184!GO:0009124;nucleoside monophosphate biosynthetic process;0.034321494771231!GO:0009123;nucleoside monophosphate metabolic process;0.034321494771231!GO:0006308;DNA catabolic process;0.034321494771231!GO:0005765;lysosomal membrane;0.0343767402726885!GO:0016746;transferase activity, transferring acyl groups;0.0343801106476969!GO:0031371;ubiquitin conjugating enzyme complex;0.0344392023134273!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0344566950858316!GO:0044433;cytoplasmic vesicle part;0.0345536703470387!GO:0006405;RNA export from nucleus;0.0348378164431956!GO:0008022;protein C-terminus binding;0.0350273723730042!GO:0045892;negative regulation of transcription, DNA-dependent;0.0353982177543332!GO:0030911;TPR domain binding;0.0361390407871069!GO:0022411;cellular component disassembly;0.0362347593199242!GO:0046519;sphingoid metabolic process;0.0363508544081774!GO:0000030;mannosyltransferase activity;0.0366186918885864!GO:0006268;DNA unwinding during replication;0.0367111496534927!GO:0050790;regulation of catalytic activity;0.0367612677278985!GO:0006596;polyamine biosynthetic process;0.0368219838358985!GO:0006354;RNA elongation;0.0369064160145916!GO:0006635;fatty acid beta-oxidation;0.0369064160145916!GO:0006378;mRNA polyadenylation;0.0370670884552296!GO:0007051;spindle organization and biogenesis;0.0373315802466728!GO:0019206;nucleoside kinase activity;0.0378644401310892!GO:0050811;GABA receptor binding;0.0378723074554095!GO:0006417;regulation of translation;0.0381704930032233!GO:0007162;negative regulation of cell adhesion;0.0383245909614453!GO:0043414;biopolymer methylation;0.0385231109460165!GO:0019362;pyridine nucleotide metabolic process;0.0394782679692501!GO:0000118;histone deacetylase complex;0.0396170718965502!GO:0006892;post-Golgi vesicle-mediated transport;0.0407865049208618!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0411952326415215!GO:0022407;regulation of cell-cell adhesion;0.0411952326415215!GO:0009161;ribonucleoside monophosphate metabolic process;0.0411952326415215!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0411952326415215!GO:0045792;negative regulation of cell size;0.0417075769408599!GO:0031418;L-ascorbic acid binding;0.0417458772660825!GO:0008094;DNA-dependent ATPase activity;0.0419330579506819!GO:0006643;membrane lipid metabolic process;0.0423093127119248!GO:0030384;phosphoinositide metabolic process;0.042456842044444!GO:0006376;mRNA splice site selection;0.0426610651064004!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0426610651064004!GO:0004680;casein kinase activity;0.0444011474498906!GO:0006284;base-excision repair;0.0469549705063393!GO:0004674;protein serine/threonine kinase activity;0.0469549705063393!GO:0047485;protein N-terminus binding;0.0469549705063393!GO:0031903;microbody membrane;0.0471046429334287!GO:0005778;peroxisomal membrane;0.0471046429334287!GO:0003682;chromatin binding;0.0474153496023361!GO:0006897;endocytosis;0.0478031928210159!GO:0010324;membrane invagination;0.0478031928210159!GO:0006338;chromatin remodeling;0.0479065599191003!GO:0031123;RNA 3'-end processing;0.0479110040703032!GO:0009119;ribonucleoside metabolic process;0.0479110040703032!GO:0006400;tRNA modification;0.0479845018791457!GO:0030308;negative regulation of cell growth;0.0484826377907738!GO:0005657;replication fork;0.0487508263166154!GO:0006518;peptide metabolic process;0.0488016607430355!GO:0008097;5S rRNA binding;0.0488016607430355!GO:0004563;beta-N-acetylhexosaminidase activity;0.0490819429935765!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0490819429935765!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0495408452951307!GO:0046813;virion attachment, binding of host cell surface receptor;0.0495408452951307!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0495408452951307!GO:0030503;regulation of cell redox homeostasis;0.049602713435437 | |||
|sample_id=11269 | |sample_id=11269 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723 | |top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11269-116G9;search_select_hide=table117:FF:11269-116G9 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Fibroblast - Dermal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12499 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12499
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12499
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.224 |
| 10 | 10 | 0.162 |
| 100 | 100 | 0.607 |
| 101 | 101 | 0.782 |
| 102 | 102 | 0.732 |
| 103 | 103 | 0.0788 |
| 104 | 104 | 0.573 |
| 105 | 105 | 0.394 |
| 106 | 106 | 0.458 |
| 107 | 107 | 0.61 |
| 108 | 108 | 0.0945 |
| 109 | 109 | 0.0362 |
| 11 | 11 | 0.0664 |
| 110 | 110 | 0.0627 |
| 111 | 111 | 0.0696 |
| 112 | 112 | 0.392 |
| 113 | 113 | 0.0248 |
| 114 | 114 | 0.083 |
| 115 | 115 | 0.428 |
| 116 | 116 | 0.0394 |
| 117 | 117 | 0.245 |
| 118 | 118 | 0.218 |
| 119 | 119 | 0.946 |
| 12 | 12 | 0.663 |
| 120 | 120 | 0.0172 |
| 121 | 121 | 0.808 |
| 122 | 122 | 0.301 |
| 123 | 123 | 0.0142 |
| 124 | 124 | 0.559 |
| 125 | 125 | 0.515 |
| 126 | 126 | 0.544 |
| 127 | 127 | 0.413 |
| 128 | 128 | 0.286 |
| 129 | 129 | 0.748 |
| 13 | 13 | 0.616 |
| 130 | 130 | 0.696 |
| 131 | 131 | 0.911 |
| 132 | 132 | 0.436 |
| 133 | 133 | 0.387 |
| 134 | 134 | 0.154 |
| 135 | 135 | 0.762 |
| 136 | 136 | 0.651 |
| 137 | 137 | 0.183 |
| 138 | 138 | 0.81 |
| 139 | 139 | 0.827 |
| 14 | 14 | 0.235 |
| 140 | 140 | 0.771 |
| 141 | 141 | 0.704 |
| 142 | 142 | 0.937 |
| 143 | 143 | 0.063 |
| 144 | 144 | 0.386 |
| 145 | 145 | 0.297 |
| 146 | 146 | 0.495 |
| 147 | 147 | 0.0594 |
| 148 | 148 | 0.48 |
| 149 | 149 | 0.0539 |
| 15 | 15 | 0.444 |
| 150 | 150 | 0.347 |
| 151 | 151 | 0.587 |
| 152 | 152 | 0.102 |
| 153 | 153 | 0.386 |
| 154 | 154 | 0.52 |
| 155 | 155 | 0.0632 |
| 156 | 156 | 0.327 |
| 157 | 157 | 0.986 |
| 158 | 158 | 0.0683 |
| 159 | 159 | 0.286 |
| 16 | 16 | 0.0629 |
| 160 | 160 | 0.0666 |
| 161 | 161 | 0.614 |
| 162 | 162 | 0.579 |
| 163 | 163 | 0.883 |
| 164 | 164 | 0.112 |
| 165 | 165 | 0.821 |
| 166 | 166 | 0.641 |
| 167 | 167 | 0.853 |
| 168 | 168 | 0.13 |
| 169 | 169 | 0.0149 |
| 17 | 17 | 0.215 |
| 18 | 18 | 0.0566 |
| 19 | 19 | 0.0258 |
| 2 | 2 | 0.488 |
| 20 | 20 | 0.855 |
| 21 | 21 | 0.0709 |
| 22 | 22 | 0.074 |
| 23 | 23 | 0.586 |
| 24 | 24 | 0.373 |
| 25 | 25 | 0.693 |
| 26 | 26 | 0.059 |
| 27 | 27 | 0.116 |
| 28 | 28 | 0.146 |
| 29 | 29 | 0.0604 |
| 3 | 3 | 0.342 |
| 30 | 30 | 0.677 |
| 31 | 31 | 0.514 |
| 32 | 32 | 0.00862 |
| 33 | 33 | 0.426 |
| 34 | 34 | 0.872 |
| 35 | 35 | 0.459 |
| 36 | 36 | 0.324 |
| 37 | 37 | 0.0357 |
| 38 | 38 | 0.818 |
| 39 | 39 | 0.244 |
| 4 | 4 | 0.108 |
| 40 | 40 | 0.623 |
| 41 | 41 | 0.709 |
| 42 | 42 | 0.907 |
| 43 | 43 | 0.153 |
| 44 | 44 | 0.118 |
| 45 | 45 | 0.853 |
| 46 | 46 | 0.0749 |
| 47 | 47 | 0.365 |
| 48 | 48 | 0.234 |
| 49 | 49 | 0.308 |
| 5 | 5 | 0.847 |
| 50 | 50 | 0.313 |
| 51 | 51 | 0.172 |
| 52 | 52 | 0.883 |
| 53 | 53 | 0.252 |
| 54 | 54 | 0.251 |
| 55 | 55 | 0.079 |
| 56 | 56 | 0.804 |
| 57 | 57 | 0.297 |
| 58 | 58 | 0.768 |
| 59 | 59 | 0.156 |
| 6 | 6 | 0.888 |
| 60 | 60 | 0.969 |
| 61 | 61 | 0.76 |
| 62 | 62 | 0.685 |
| 63 | 63 | 0.0898 |
| 64 | 64 | 0.649 |
| 65 | 65 | 0.251 |
| 66 | 66 | 0.711 |
| 67 | 67 | 0.705 |
| 68 | 68 | 0.473 |
| 69 | 69 | 0.222 |
| 7 | 7 | 0.547 |
| 70 | 70 | 0.0461 |
| 71 | 71 | 0.115 |
| 72 | 72 | 0.826 |
| 73 | 73 | 0.0247 |
| 74 | 74 | 0.323 |
| 75 | 75 | 0.135 |
| 76 | 76 | 0.63 |
| 77 | 77 | 0.0711 |
| 78 | 78 | 0.78 |
| 79 | 79 | 0.114 |
| 8 | 8 | 0.00768 |
| 80 | 80 | 0.265 |
| 81 | 81 | 0.589 |
| 82 | 82 | 0.467 |
| 83 | 83 | 0.884 |
| 84 | 84 | 0.134 |
| 85 | 85 | 0.0785 |
| 86 | 86 | 0.72 |
| 87 | 87 | 0.0234 |
| 88 | 88 | 0.732 |
| 89 | 89 | 0.0635 |
| 9 | 9 | 0.252 |
| 90 | 90 | 0.993 |
| 91 | 91 | 0.985 |
| 92 | 92 | 0.0799 |
| 93 | 93 | 0.87 |
| 94 | 94 | 0.209 |
| 95 | 95 | 0.0672 |
| 96 | 96 | 0.874 |
| 97 | 97 | 0.85 |
| 98 | 98 | 0.398 |
| 99 | 99 | 0.011 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12499
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
