FF:11269-116G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004983 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004983 | ||
|accession_numbers=CAGE;DRX008254;DRR009126;DRZ000551;DRZ001936;DRZ011901;DRZ013286 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036992;DRR041358;DRZ007000 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.83!1859.85!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.89!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.55!107.70!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.89!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.47!48.07!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!247.86!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!1.45!30.90!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.87!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.23!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.44!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.22!TCF12;;chr12:66218923..66218934,+!p14@HMGA2!1.30!18.73!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.73!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.29!84.60!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.48!EBF2;;chr12:66218904..66218913,+!p11@HMGA2!1.24!16.23!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.42!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.53!ZFP106;;chr11:47279504..47279563,+!p1@NR1H3!1.19!33.09!NR1H3;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.12!DRAP1;;chr3:12329397..12329433,+!p2@PPARG!1.15!29.66!PPARG;;chr17:59477233..59477263,+!p1@TBX2!1.14!39.64!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.80!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.86!IRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.10!15.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.08!10.93!RFX8;;chr8:128748308..128748324,+!p2@MYC!1.07!301.23!MYC;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.95!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.49!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!1.03!9.68!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.05!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.99!56.50!SNAI2;;chr2:223163706..223163730,-!p1@PAX3!0.99!8.74!PAX3;;chr3:138665937..138665968,-!p1@FOXL2!0.96!8.12!FOXL2;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.36!TBX18;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.99!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.94!7.80!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.97!FOSL1;;chr7:19157248..19157268,-!p1@TWIST1!0.93!21.54!TWIST1;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.11!RBPJ;;chr5:133450365..133450444,+!p1@TCF7!0.88!31.53!TCF7;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.56!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.88!6.56!HMGA2;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.87!SHOX2;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.24!TCF12;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.61!PPARG;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.80!TFAP2C;;chr6:34204973..34204990,+!p4@HMGA1!0.84!83.66!HMGA1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.93!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.09!RARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!30.90!CREB3L1;;chr2:200323414..200323455,-!p1@SATB2!0.81!12.17!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.12!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.81!7.18!DRAP1;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.31!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.80!5.31!EN1;;chr16:86600426..86600441,+!p1@FOXC2!0.79!13.42!FOXC2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.30!NR2F2;;chr2:102091144..102091183,-!p2@RFX8!0.78!4.99!RFX8;;chr2:175199675..175199688,+!p1@SP9!0.78!4.99!SP9;;chr12:115122318..115122331,-!p2@TBX3!0.78!4.99!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.72!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.77!26.85!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.77!23.72!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.68!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.76!7.49!IFI16;;chr17:59477275..59477286,+!p3@TBX2!0.76!6.56!TBX2;;chr6:34204672..34204692,+!p1@HMGA1!0.75!578.43!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.18!NFIX;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.18!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.75!5.31!NR1H3;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.68!HOXD8;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.68!TBX2;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.12!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.74!6.87!SATB2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.52!SNAI2;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.99!SOX15;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.37!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.37!KDM5D;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.18!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.70!6.56!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.62!EBF1;;chr12:85674018..85674039,+!p3@ALX1!0.70!4.06!ALX1;;chr1:170632683..170632696,+!p12@PRRX1!0.70!4.06!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.70!4.06!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr17:1959369..1959388,+!p2@HIC1!0.68!10.93!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.68!NFATC4;;chr11:65687243..65687276,+!p8@DRAP1!0.68!5.31!DRAP1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.75!EBF3;;chr11:65688877..65688891,+!p13@DRAP1!0.68!3.75!DRAP1;;chr1:170632439..170632465,+!p11@PRRX1!0.68!3.75!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.68!3.75!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.75!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.75!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.75!PRRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.67!112.38!FOSL1;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.59!TBX3;;chr5:321810..321877,+!p1@AHRR!0.67!13.11!AHRR;;chr17:41622765..41622821,-!p2@ETV4!0.67!5.93!ETV4;;chr8:128750654..128750793,+!p3@MYC!0.66!16.54!MYC;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.56!CREB3L1;;chr8:128747661..128747703,+!p6@MYC!0.65!4.99!MYC;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.43!FOXL1;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.43!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.74!TOX2;;chr5:43067636..43067674,+!p6@ZNF131!0.63!4.68!ZNF131;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.12!RUNX1T1;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.12!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.12!CREB3L1;;chr12:66218420..66218439,+!p12@HMGA2!0.62!3.12!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.12!ZFY;;chr2:177016272..177016286,+!p2@HOXD4!0.62!3.12!HOXD4;;chr2:191906489..191906517,-!p6@STAT4!0.62!3.12!STAT4;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.12!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.12!FOXC2;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.68!RBPJ;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.37!FOXF2;;chr17:41622925..41622976,-!p3@ETV4!0.59!4.68!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.58!36.83!ZNF219;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.24!BACH1;;chr2:242576431..242576458,-!p3@THAP4!0.58!7.80!THAP4;;chr15:96869255..96869291,+!p6@NR2F2!0.58!5.62!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.06!NR2F2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.81!RFX8;;chr2:177016336..177016350,+!p1@HOXD4!0.58!2.81!HOXD4;;chr12:115122303..115122314,-!p6@TBX3!0.58!2.81!TBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.58!2.81!ZNF560;;chr1:119530493..119530572,-!p1@TBX15!0.58!2.81!TBX15;;chr1:170632028..170632043,+!p20@PRRX1!0.58!2.81!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.81!IRX2;;chr11:65687158..65687216,+!p4@DRAP1!0.57!18.73!DRAP1;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.68!TSC22D4;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.05!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.55!7.18!NR2F2;;chr8:128750555..128750609,+!p5@MYC!0.55!5.93!MYC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.08!ELK3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.54!2.50!POU3F3;;chr2:175199697..175199706,+!p2@SP9!0.54!2.50!SP9;;chr3:21792631..21792665,-!p3@ZNF385D!0.54!2.50!ZNF385D;;chr4:26322673..26322684,+!p11@RBPJ!0.54!2.50!RBPJ;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.68!AEBP1;;chr1:158979792..158979814,+!p2@IFI16!0.53!29.34!IFI16;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.42!FOXD1;;chr20:48807456..48807475,+!p3@CEBPB!0.53!5.31!CEBPB;;chr12:10875351..10875422,-!p4@CSDA!0.53!5.31!CSDA;;chr7:113726357..113726443,+!p1@FOXP2!0.53!4.68!FOXP2;;chr3:141121847..141121868,+!p5@ZBTB38!0.53!4.06!ZBTB38;;chr15:96874216..96874236,+!p13@NR2F2!0.52!4.06!NR2F2;;chr20:48807648..48807671,+!p9@CEBPB!0.52!3.75!CEBPB;;chr10:31607702..31607755,+!p3@ZEB1!0.52!2.81!ZEB1;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.91!ELK3;;chr17:61919985..61920012,-!p3@SMARCD2!0.51!6.56!SMARCD2;;chr2:113993052..113993097,-!p2@PAX8!0.51!5.93!PAX8;;chr7:4721870..4721878,+!p2@FOXK1!0.51!3.75!FOXK1;;chr3:178789522..178789564,-!p2@ZMAT3!0.50!20.60!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.81!TBX18;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.19!RUNX1T1;;chr3:12329464..12329472,+!p6@PPARG!0.50!2.19!PPARG;;chr12:53613935..53613947,-!p8@RARG!0.50!2.19!RARG;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.19!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.50!2.19!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.50!2.19!PRRX1;;chr20:48807351..48807384,+!p1@CEBPB!0.49!289.37!CEBPB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.49!11.24!LRRFIP2;;chr19:42636586..42636607,-!p1@POU2F2!0.49!7.18!POU2F2;;chr10:77161133..77161176,-!p3@ZNF503!0.48!5.31!ZNF503;;chr7:44143978..44143989,+!p2@AEBP1!0.48!4.37!AEBP1;;chr9:16870710..16870763,-!p1@BNC2!0.48!4.06!BNC2;;chr17:41623009..41623053,-!p4@ETV4!0.48!3.75!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.50!ZNF438;;chr5:72743793..72743855,-!p4@FOXD1!0.48!2.50!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.47!3.75!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.47!3.12!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.47!2.50!IFI16;;chr11:120107344..120107351,+!p1@POU2F3!0.47!2.50!POU2F3;;chr14:61116183..61116208,-!p1@SIX1!0.46!9.36!SIX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.46!8.74!BHLHE41;;chr20:6748325..6748352,+!p1@BMP2!0.46!3.12!BMP2;;chr9:16870659..16870675,-!p2@BNC2!0.46!2.50!BNC2;;chr15:67418119..67418162,+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| |expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!1.83!1859.85!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.62!45.89!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.55!107.70!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.50!40.89!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.47!48.07!TWIST2;;chr12:66218836..66218888,+!p1@HMGA2!1.46!247.86!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!1.45!30.90!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.87!OSR1;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.23!TCF21;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.44!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.30!31.22!TCF12;;chr12:66218923..66218934,+!p14@HMGA2!1.30!18.73!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.73!HIF3A;;chr12:66218598..66218645,+!p2@HMGA2!1.29!84.60!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!1.27!17.48!EBF2;;chr12:66218904..66218913,+!p11@HMGA2!1.24!16.23!HMGA2;;chr1:170633262..170633285,+!p3@PRRX1!1.23!18.42!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!1.20!26.53!ZFP106;;chr11:47279504..47279563,+!p1@NR1H3!1.19!33.09!NR1H3;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.12!DRAP1;;chr3:12329397..12329433,+!p2@PPARG!1.15!29.66!PPARG;;chr17:59477233..59477263,+!p1@TBX2!1.14!39.64!TBX2;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.80!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.86!IRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.10!15.30!PRRX2;;chr2:102091566..102091581,-!p1@RFX8!1.08!10.93!RFX8;;chr8:128748308..128748324,+!p2@MYC!1.07!301.23!MYC;;chr11:65686802..65686818,+!p6@DRAP1!1.07!18.73!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!1.06!44.95!DRAP1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.49!ZBTB38;;chr1:170632723..170632739,+!p8@PRRX1!1.03!9.68!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.00!9.05!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.99!56.50!SNAI2;;chr2:223163706..223163730,-!p1@PAX3!0.99!8.74!PAX3;;chr3:138665937..138665968,-!p1@FOXL2!0.96!8.12!FOXL2;;chr6:85474299..85474324,-!p1@TBX18!0.95!14.36!TBX18;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.99!HMGA2;;chr12:85673977..85674015,+!p1@ALX1!0.94!7.80!ALX1;;chr11:65667884..65667895,-!p2@FOSL1!0.93!29.97!FOSL1;;chr7:19157248..19157268,-!p1@TWIST1!0.93!21.54!TWIST1;;chr4:26322267..26322334,+!p3@RBPJ!0.92!18.11!RBPJ;;chr5:133450365..133450444,+!p1@TCF7!0.88!31.53!TCF7;;chr1:170632477..170632506,+!p6@PRRX1!0.88!6.56!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.88!6.56!HMGA2;;chr3:157823517..157823562,-!p1@SHOX2!0.87!6.87!SHOX2;;chr15:57511589..57511608,+!p4@TCF12!0.86!6.24!TCF12;;chr3:12329358..12329393,+!p3@PPARG!0.85!15.61!PPARG;;chr20:55204351..55204377,+!p1@TFAP2C!0.85!7.80!TFAP2C;;chr6:34204973..34204990,+!p4@HMGA1!0.84!83.66!HMGA1;;chr12:66357214..66357233,+!p13@HMGA2!0.84!5.93!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.83!33.09!RARG;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!30.90!CREB3L1;;chr2:200323414..200323455,-!p1@SATB2!0.81!12.17!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.81!8.12!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.81!7.18!DRAP1;;chr1:170632137..170632172,+!p10@PRRX1!0.80!5.31!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.80!5.31!EN1;;chr16:86600426..86600441,+!p1@FOXC2!0.79!13.42!FOXC2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr15:96874145..96874166,+!p7@NR2F2!0.78!10.30!NR2F2;;chr2:102091144..102091183,-!p2@RFX8!0.78!4.99!RFX8;;chr2:175199675..175199688,+!p1@SP9!0.78!4.99!SP9;;chr12:115122318..115122331,-!p2@TBX3!0.78!4.99!TBX3;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.72!ETV1;;chr6:34205372..34205412,+!p5@HMGA1!0.77!26.85!HMGA1;;chr20:42543441..42543497,+!p1@TOX2!0.77!23.72!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.76!9.68!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.76!7.49!IFI16;;chr17:59477275..59477286,+!p3@TBX2!0.76!6.56!TBX2;;chr6:34204672..34204692,+!p1@HMGA1!0.75!578.43!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.18!NFIX;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.18!HMGA2;;chr11:47279248..47279264,+!p3@NR1H3!0.75!5.31!NR1H3;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.68!HOXD8;;chr17:59477403..59477414,+!p4@TBX2!0.75!4.68!TBX2;;chr17:59477197..59477212,+!p2@TBX2!0.74!8.12!TBX2;;chr2:200322654..200322707,-!p2@SATB2!0.74!6.87!SATB2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.52!SNAI2;;chr17:7492684..7492778,-!p2@SOX15!0.73!9.99!SOX15;;chr12:66218469..66218477,+!p16@HMGA2!0.73!4.37!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!0.73!4.37!KDM5D;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.18!MSX2;;chr12:66218378..66218401,+!p6@HMGA2!0.70!6.56!HMGA2;;chr5:158526459..158526481,-!p2@EBF1!0.70!5.62!EBF1;;chr12:85674018..85674039,+!p3@ALX1!0.70!4.06!ALX1;;chr1:170632683..170632696,+!p12@PRRX1!0.70!4.06!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.70!4.06!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.69!10.61!EBF1;;chr17:1959369..1959388,+!p2@HIC1!0.68!10.93!HIC1;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.68!NFATC4;;chr11:65687243..65687276,+!p8@DRAP1!0.68!5.31!DRAP1;;chr10:131762504..131762555,-!p1@EBF3!0.68!3.75!EBF3;;chr11:65688877..65688891,+!p13@DRAP1!0.68!3.75!DRAP1;;chr1:170632439..170632465,+!p11@PRRX1!0.68!3.75!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.68!3.75!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.68!3.75!PRRX1;;chr9:16705069..16705086,-!p3@BNC2!0.68!3.75!BNC2;;chr9:132427883..132427951,+!p2@PRRX2!0.68!3.75!PRRX2;;chr11:65667846..65667868,-!p1@FOSL1!0.67!112.38!FOSL1;;chr12:115121962..115121987,-!p1@TBX3!0.67!35.59!TBX3;;chr5:321810..321877,+!p1@AHRR!0.67!13.11!AHRR;;chr17:41622765..41622821,-!p2@ETV4!0.67!5.93!ETV4;;chr8:128750654..128750793,+!p3@MYC!0.66!16.54!MYC;;chr11:46299539..46299620,+!p2@CREB3L1!0.66!6.56!CREB3L1;;chr8:128747661..128747703,+!p6@MYC!0.65!4.99!MYC;;chr16:86612320..86612394,+!p1@FOXL1!0.65!3.43!FOXL1;;chr3:138665969..138665993,-!p2@FOXL2!0.65!3.43!FOXL2;;chr20:42543506..42543549,+!p2@TOX2!0.63!8.74!TOX2;;chr5:43067636..43067674,+!p6@ZNF131!0.63!4.68!ZNF131;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.12!RUNX1T1;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.12!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.62!3.12!CREB3L1;;chr12:66218420..66218439,+!p12@HMGA2!0.62!3.12!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.62!3.12!ZFY;;chr2:177016272..177016286,+!p2@HOXD4!0.62!3.12!HOXD4;;chr2:191906489..191906517,-!p6@STAT4!0.62!3.12!STAT4;;chr2:19558327..19558334,-!p2@OSR1!0.62!3.12!OSR1;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.12!FOXC2;;chr4:26322373..26322393,+!p4@RBPJ!0.60!4.68!RBPJ;;chr6:1389789..1389821,+!p1@FOXF2!0.60!4.37!FOXF2;;chr17:41622925..41622976,-!p3@ETV4!0.59!4.68!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.58!36.83!ZNF219;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.24!BACH1;;chr2:242576431..242576458,-!p3@THAP4!0.58!7.80!THAP4;;chr15:96869255..96869291,+!p6@NR2F2!0.58!5.62!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.58!4.06!NR2F2;;chr2:102091478..102091490,-!p3@RFX8!0.58!2.81!RFX8;;chr2:177016336..177016350,+!p1@HOXD4!0.58!2.81!HOXD4;;chr12:115122303..115122314,-!p6@TBX3!0.58!2.81!TBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.58!2.81!ZNF560;;chr1:119530493..119530572,-!p1@TBX15!0.58!2.81!TBX15;;chr1:170632028..170632043,+!p20@PRRX1!0.58!2.81!PRRX1;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.81!IRX2;;chr11:65687158..65687216,+!p4@DRAP1!0.57!18.73!DRAP1;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.68!TSC22D4;;chr20:39946361..39946379,-!p2@ZHX3!0.55!9.05!ZHX3;;chr15:96874244..96874259,+!p5@NR2F2!0.55!7.18!NR2F2;;chr8:128750555..128750609,+!p5@MYC!0.55!5.93!MYC;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr12:96588143..96588185,+!p1@ELK3!0.54!38.08!ELK3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.54!2.50!POU3F3;;chr2:175199697..175199706,+!p2@SP9!0.54!2.50!SP9;;chr3:21792631..21792665,-!p3@ZNF385D!0.54!2.50!ZNF385D;;chr4:26322673..26322684,+!p11@RBPJ!0.54!2.50!RBPJ;;chr7:44143925..44143970,+!p1@AEBP1!0.53!68.68!AEBP1;;chr1:158979792..158979814,+!p2@IFI16!0.53!29.34!IFI16;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.42!FOXD1;;chr20:48807456..48807475,+!p3@CEBPB!0.53!5.31!CEBPB;;chr12:10875351..10875422,-!p4@CSDA!0.53!5.31!CSDA;;chr7:113726357..113726443,+!p1@FOXP2!0.53!4.68!FOXP2;;chr3:141121847..141121868,+!p5@ZBTB38!0.53!4.06!ZBTB38;;chr15:96874216..96874236,+!p13@NR2F2!0.52!4.06!NR2F2;;chr20:48807648..48807671,+!p9@CEBPB!0.52!3.75!CEBPB;;chr10:31607702..31607755,+!p3@ZEB1!0.52!2.81!ZEB1;;chr12:96588219..96588263,+!p2@ELK3!0.51!20.91!ELK3;;chr17:61919985..61920012,-!p3@SMARCD2!0.51!6.56!SMARCD2;;chr2:113993052..113993097,-!p2@PAX8!0.51!5.93!PAX8;;chr7:4721870..4721878,+!p2@FOXK1!0.51!3.75!FOXK1;;chr3:178789522..178789564,-!p2@ZMAT3!0.50!20.60!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.81!TBX18;;chr8:93074848..93074871,-!p3@RUNX1T1!0.50!2.19!RUNX1T1;;chr3:12329464..12329472,+!p6@PPARG!0.50!2.19!PPARG;;chr12:53613935..53613947,-!p8@RARG!0.50!2.19!RARG;;chr1:170632310..170632321,+!p15@PRRX1!0.50!2.19!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.50!2.19!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.50!2.19!PRRX1;;chr1:170633225..170633230,+!p25@PRRX1!0.50!2.19!PRRX1;;chr20:48807351..48807384,+!p1@CEBPB!0.49!289.37!CEBPB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.49!11.24!LRRFIP2;;chr19:42636586..42636607,-!p1@POU2F2!0.49!7.18!POU2F2;;chr10:77161133..77161176,-!p3@ZNF503!0.48!5.31!ZNF503;;chr7:44143978..44143989,+!p2@AEBP1!0.48!4.37!AEBP1;;chr9:16870710..16870763,-!p1@BNC2!0.48!4.06!BNC2;;chr17:41623009..41623053,-!p4@ETV4!0.48!3.75!ETV4;;chr10:31288398..31288455,-!p2@ZNF438!0.48!2.50!ZNF438;;chr5:72743793..72743855,-!p4@FOXD1!0.48!2.50!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.47!3.75!FOXD1;;chr15:96876966..96877017,+!p12@NR2F2!0.47!3.12!NR2F2;;chr1:158985469..158985489,+!p7@IFI16!0.47!2.50!IFI16;;chr11:120107344..120107351,+!p1@POU2F3!0.47!2.50!POU2F3;;chr14:61116183..61116208,-!p1@SIX1!0.46!9.36!SIX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.46!8.74!BHLHE41;;chr20:6748325..6748352,+!p1@BMP2!0.46!3.12!BMP2;;chr9:16870659..16870675,-!p2@BNC2!0.46!2.50!BNC2;;chr15:67418119..67418162,+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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor1.CNhs12499.11269-116G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11269-116G9 | |id=FF:11269-116G9 | ||
|is_a=EFO:0002091;;FF:0000062 | |is_a=EFO:0002091;;FF:0000062 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12499 | |||
|library_id_phase_based=2:CNhs12499 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11269 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.ACAGTG.11269 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11269 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.ACAGTG.11269 | |||
|name=Fibroblast - Dermal, donor1 | |name=Fibroblast - Dermal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12499,LSID916,release011,COMPLETED | |profile_hcage=CNhs12499,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA106-R10a | |rna_catalog_number=CA106-R10a | ||
| Line 57: | Line 82: | ||
|rna_tube_id=116G9 | |rna_tube_id=116G9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.ACAGTG | |||
|sample_age=71 | |sample_age=71 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723 | |top_motifs=HES1:2.11083212596;RXR{A,B,G}:1.61269873736;ZNF238:1.32416122089;ALX4:1.13753819276;GZF1:1.04961176281;NKX2-2,8:1.04883911393;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.972370136283;bHLH_family:0.957561190054;UFEwm:0.892978799115;TFAP4:0.864813873253;NKX2-1,4:0.793520812912;ESR1:0.779080871877;EN1,2:0.725746678829;HOX{A4,D4}:0.723022038402;ONECUT1,2:0.701213457475;ESRRA:0.681624116801;FOXQ1:0.658839901472;ZNF423:0.644470867989;PAX1,9:0.580391818702;TAL1_TCF{3,4,12}:0.57501667806;STAT5{A,B}:0.568562035384;LHX3,4:0.566489617145;HOX{A5,B5}:0.562834272913;TFCP2:0.527818462418;NR3C1:0.493829865003;KLF4:0.460815773327;GATA4:0.437548696546;TP53:0.425881000942;XBP1:0.390314879212;HOX{A6,A7,B6,B7}:0.381263946001;POU3F1..4:0.366549509143;SPZ1:0.356386685738;PAX8:0.352241557415;MTF1:0.348455348816;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.326511133271;YY1:0.318738579977;AR:0.312280468253;GFI1B:0.3063684942;ZIC1..3:0.28038629613;FOXL1:0.275826106238;TEAD1:0.275089702161;BACH2:0.270561989167;AHR_ARNT_ARNT2:0.263668658643;IKZF1:0.261005700479;HIF1A:0.255060320541;ZBTB6:0.215774009374;GTF2I:0.214704357946;TLX1..3_NFIC{dimer}:0.205821329944;FOS_FOS{B,L1}_JUN{B,D}:0.205338988495;NFE2L1:0.204301769221;NFIX:0.163120732213;HNF4A_NR2F1,2:0.156815086914;EBF1:0.142768630756;NFATC1..3:0.142492829578;ARID5B:0.126800461924;TFAP2{A,C}:0.12227261655;TBX4,5:0.120987302786;TOPORS:0.099106916076;TEF:0.0958922090387;NFE2L2:0.0807937904123;NHLH1,2:0.0796802605863;SRF:0.0641129726121;GTF2A1,2:0.0583649260243;HLF:0.0501337375423;ZNF143:0.0228778932563;GCM1,2:0.0190112845782;FOSL2:0.000436455006812;CEBPA,B_DDIT3:0.000226327048326;ATF6:-0.000158015049217;LEF1_TCF7_TCF7L1,2:-0.00359952869003;MYFfamily:-0.0160519802647;MYBL2:-0.0166670699942;HNF1A:-0.0192249000668;HSF1,2:-0.0238782083604;TFDP1:-0.0291393272186;EGR1..3:-0.0328519978732;GLI1..3:-0.0364176783424;NANOG{mouse}:-0.0447359581004;ELK1,4_GABP{A,B1}:-0.0569932980294;ADNP_IRX_SIX_ZHX:-0.0624653864024;NKX3-2:-0.062571957888;FOXD3:-0.0646720605007;PAX5:-0.0735683597203;PRDM1:-0.0748478428191;SOX17:-0.0750176645413;PPARG:-0.0790887983725;REST:-0.0852656584808;NRF1:-0.0896913743003;POU2F1..3:-0.149102836974;PDX1:-0.149483587861;HAND1,2:-0.15278443315;RFX1:-0.154948145766;AIRE:-0.162787863865;PRRX1,2:-0.163404836578;NR5A1,2:-0.165482741865;TFAP2B:-0.175878839651;TBP:-0.18177151054;NKX6-1,2:-0.19167805922;NFE2:-0.204799558663;EVI1:-0.211676258509;MTE{core}:-0.217446962373;HIC1:-0.230800975603;HMX1:-0.235996688417;MEF2{A,B,C,D}:-0.236939468028;CRX:-0.238424203154;SREBF1,2:-0.241800542236;CREB1:-0.247573502739;PATZ1:-0.248302714995;PAX3,7:-0.25107818412;ZFP161:-0.267525124756;MZF1:-0.269311832891;MYB:-0.289278547601;NANOG:-0.29382699485;PBX1:-0.296837314307;MED-1{core}:-0.308039031741;NFIL3:-0.308468530617;RREB1:-0.324186198853;NFKB1_REL_RELA:-0.347490580808;NR6A1:-0.3479172227;TGIF1:-0.357422310243;NR1H4:-0.364661759435;SPIB:-0.391985797332;ELF1,2,4:-0.394259984891;MAZ:-0.395286529341;RUNX1..3:-0.401611425114;SPI1:-0.401729657303;STAT2,4,6:-0.404333944848;PAX6:-0.407847198601;NKX3-1:-0.408503874899;ZBTB16:-0.40896695589;ZNF148:-0.413919536974;MAFB:-0.417652244006;PAX4:-0.425620145626;DMAP1_NCOR{1,2}_SMARC:-0.434257642542;CDX1,2,4:-0.445625683115;ALX1:-0.461466393771;GFI1:-0.463642134141;FOXM1:-0.468182466787;ETS1,2:-0.475636447003;HOXA9_MEIS1:-0.480073992062;XCPE1{core}:-0.492219339433;FOX{I1,J2}:-0.498267446251;RFX2..5_RFXANK_RFXAP:-0.499099162677;HBP1_HMGB_SSRP1_UBTF:-0.518984656641;GATA6:-0.526691739463;MYOD1:-0.526949058336;FOXO1,3,4:-0.535294490009;T:-0.539793980987;NKX2-3_NKX2-5:-0.541453033525;E2F1..5:-0.568431464949;FOX{D1,D2}:-0.571754169537;SP1:-0.575243714465;ATF2:-0.580215809019;OCT4_SOX2{dimer}:-0.580286291519;ATF5_CREB3:-0.599390144914;DBP:-0.606910518487;JUN:-0.6179569364;IRF1,2:-0.627828885429;RBPJ:-0.634887369872;TLX2:-0.639016092382;CDC5L:-0.657996410046;SMAD1..7,9:-0.667262452871;LMO2:-0.675407737826;ZEB1:-0.694478991673;PAX2:-0.718309035855;POU1F1:-0.752607709459;CUX2:-0.755133816312;FOXP3:-0.773686403357;VSX1,2:-0.775679776725;NFY{A,B,C}:-0.787341923238;STAT1,3:-0.799991411775;RORA:-0.813635584899;BREu{core}:-0.816962051167;FOXA2:-0.835992730523;SNAI1..3:-0.85019574476;IRF7:-0.885219717791;SOX5:-0.896149243481;ZNF384:-0.926158110831;POU6F1:-0.936108859276;BPTF:-0.942893330069;ATF4:-0.953710736175;SOX2:-1.07690831016;FOXP1:-1.08375560946;SOX{8,9,10}:-1.12125742714;RXRA_VDR{dimer}:-1.15944077142;HMGA1,2:-1.23889920443;IKZF2:-1.26084919126;FOX{F1,F2,J1}:-1.26442920234;POU5F1:-1.28687389507;FOXN1:-1.3403045937;PITX1..3:-1.41995085405;EP300:-1.47196617723 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11269-116G9;search_select_hide=table117:FF:11269-116G9 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Fibroblast - Dermal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12499 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12499
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12499
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.224 |
| 10 | 10 | 0.162 |
| 100 | 100 | 0.607 |
| 101 | 101 | 0.782 |
| 102 | 102 | 0.732 |
| 103 | 103 | 0.0788 |
| 104 | 104 | 0.573 |
| 105 | 105 | 0.394 |
| 106 | 106 | 0.458 |
| 107 | 107 | 0.61 |
| 108 | 108 | 0.0945 |
| 109 | 109 | 0.0362 |
| 11 | 11 | 0.0664 |
| 110 | 110 | 0.0627 |
| 111 | 111 | 0.0696 |
| 112 | 112 | 0.392 |
| 113 | 113 | 0.0248 |
| 114 | 114 | 0.083 |
| 115 | 115 | 0.428 |
| 116 | 116 | 0.0394 |
| 117 | 117 | 0.245 |
| 118 | 118 | 0.218 |
| 119 | 119 | 0.946 |
| 12 | 12 | 0.663 |
| 120 | 120 | 0.0172 |
| 121 | 121 | 0.808 |
| 122 | 122 | 0.301 |
| 123 | 123 | 0.0142 |
| 124 | 124 | 0.559 |
| 125 | 125 | 0.515 |
| 126 | 126 | 0.544 |
| 127 | 127 | 0.413 |
| 128 | 128 | 0.286 |
| 129 | 129 | 0.748 |
| 13 | 13 | 0.616 |
| 130 | 130 | 0.696 |
| 131 | 131 | 0.911 |
| 132 | 132 | 0.436 |
| 133 | 133 | 0.387 |
| 134 | 134 | 0.154 |
| 135 | 135 | 0.762 |
| 136 | 136 | 0.651 |
| 137 | 137 | 0.183 |
| 138 | 138 | 0.81 |
| 139 | 139 | 0.827 |
| 14 | 14 | 0.235 |
| 140 | 140 | 0.771 |
| 141 | 141 | 0.704 |
| 142 | 142 | 0.937 |
| 143 | 143 | 0.063 |
| 144 | 144 | 0.386 |
| 145 | 145 | 0.297 |
| 146 | 146 | 0.495 |
| 147 | 147 | 0.0594 |
| 148 | 148 | 0.48 |
| 149 | 149 | 0.0539 |
| 15 | 15 | 0.444 |
| 150 | 150 | 0.347 |
| 151 | 151 | 0.587 |
| 152 | 152 | 0.102 |
| 153 | 153 | 0.386 |
| 154 | 154 | 0.52 |
| 155 | 155 | 0.0632 |
| 156 | 156 | 0.327 |
| 157 | 157 | 0.986 |
| 158 | 158 | 0.0683 |
| 159 | 159 | 0.286 |
| 16 | 16 | 0.0629 |
| 160 | 160 | 0.0666 |
| 161 | 161 | 0.614 |
| 162 | 162 | 0.579 |
| 163 | 163 | 0.883 |
| 164 | 164 | 0.112 |
| 165 | 165 | 0.821 |
| 166 | 166 | 0.641 |
| 167 | 167 | 0.853 |
| 168 | 168 | 0.13 |
| 169 | 169 | 0.0149 |
| 17 | 17 | 0.215 |
| 18 | 18 | 0.0566 |
| 19 | 19 | 0.0258 |
| 2 | 2 | 0.488 |
| 20 | 20 | 0.855 |
| 21 | 21 | 0.0709 |
| 22 | 22 | 0.074 |
| 23 | 23 | 0.586 |
| 24 | 24 | 0.373 |
| 25 | 25 | 0.693 |
| 26 | 26 | 0.059 |
| 27 | 27 | 0.116 |
| 28 | 28 | 0.146 |
| 29 | 29 | 0.0604 |
| 3 | 3 | 0.342 |
| 30 | 30 | 0.677 |
| 31 | 31 | 0.514 |
| 32 | 32 | 0.00862 |
| 33 | 33 | 0.426 |
| 34 | 34 | 0.872 |
| 35 | 35 | 0.459 |
| 36 | 36 | 0.324 |
| 37 | 37 | 0.0357 |
| 38 | 38 | 0.818 |
| 39 | 39 | 0.244 |
| 4 | 4 | 0.108 |
| 40 | 40 | 0.623 |
| 41 | 41 | 0.709 |
| 42 | 42 | 0.907 |
| 43 | 43 | 0.153 |
| 44 | 44 | 0.118 |
| 45 | 45 | 0.853 |
| 46 | 46 | 0.0749 |
| 47 | 47 | 0.365 |
| 48 | 48 | 0.234 |
| 49 | 49 | 0.308 |
| 5 | 5 | 0.847 |
| 50 | 50 | 0.313 |
| 51 | 51 | 0.172 |
| 52 | 52 | 0.883 |
| 53 | 53 | 0.252 |
| 54 | 54 | 0.251 |
| 55 | 55 | 0.079 |
| 56 | 56 | 0.804 |
| 57 | 57 | 0.297 |
| 58 | 58 | 0.768 |
| 59 | 59 | 0.156 |
| 6 | 6 | 0.888 |
| 60 | 60 | 0.969 |
| 61 | 61 | 0.76 |
| 62 | 62 | 0.685 |
| 63 | 63 | 0.0898 |
| 64 | 64 | 0.649 |
| 65 | 65 | 0.251 |
| 66 | 66 | 0.711 |
| 67 | 67 | 0.705 |
| 68 | 68 | 0.473 |
| 69 | 69 | 0.222 |
| 7 | 7 | 0.547 |
| 70 | 70 | 0.0461 |
| 71 | 71 | 0.115 |
| 72 | 72 | 0.826 |
| 73 | 73 | 0.0247 |
| 74 | 74 | 0.323 |
| 75 | 75 | 0.135 |
| 76 | 76 | 0.63 |
| 77 | 77 | 0.0711 |
| 78 | 78 | 0.78 |
| 79 | 79 | 0.114 |
| 8 | 8 | 0.00768 |
| 80 | 80 | 0.265 |
| 81 | 81 | 0.589 |
| 82 | 82 | 0.467 |
| 83 | 83 | 0.884 |
| 84 | 84 | 0.134 |
| 85 | 85 | 0.0785 |
| 86 | 86 | 0.72 |
| 87 | 87 | 0.0234 |
| 88 | 88 | 0.732 |
| 89 | 89 | 0.0635 |
| 9 | 9 | 0.252 |
| 90 | 90 | 0.993 |
| 91 | 91 | 0.985 |
| 92 | 92 | 0.0799 |
| 93 | 93 | 0.87 |
| 94 | 94 | 0.209 |
| 95 | 95 | 0.0672 |
| 96 | 96 | 0.874 |
| 97 | 97 | 0.85 |
| 98 | 98 | 0.398 |
| 99 | 99 | 0.011 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12499
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
