FF:11246-116E4: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{f5samples
|id=FF:11246-116E4
|name=Intestinal epithelial cells, donor1
|sample_id=11246
|rna_tube_id=116E4
|rna_box=116
|rna_position=E4
|sample_cell_lot=lot:RI519
|...") |
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004786 | ||
| | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004786 | ||
| | |HumanCAGEScanFiles=NCig10043;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Intestinal%2520epithelial%2520cells%2520%28polarized%29%252c%2520donor1.NCig10043.11246-116E4.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008310;DRR009182;DRZ000607;DRZ001992;DRZ011957;DRZ013342 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036993;DRR041359;DRZ007001 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000483,UBERON:0001242,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0001262,UBERON:0004786,UBERON:0000485,UBERON:0003350,UBERON:0003929,UBERON:0004808,UBERON:0001277,UBERON:0010317,UBERON:0001555,UBERON:0005409 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002563,CL:0000255,CL:0002076,CL:0002251 | |||
| | |||
| | |||
|ancestors_in_anatomy_facet=UBERON: | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000080 | ||
|comment=Previously: Intestinal epithelial cells, donor1 | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.58!379.91!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.47!297.02!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.98!150.05!FOXQ1;;chr7:115608357..115608372,-!p3@TFEC!1.91!79.82!TFEC;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.40!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.82!65.80!FOXA1;;chr20:42984330..42984364,+!p2@HNF4A!1.81!63.71!HNF4A;;chr7:115608319..115608352,-!p4@TFEC!1.78!58.79!TFEC;;chr20:43029862..43029900,+!p1@HNF4A!1.68!47.35!HNF4A;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.67!45.63!SEBOX;;chr19:46806868..46806883,+!p3@HIF3A!1.66!44.40!HIF3A;;chr13:28543431..28543487,-!p1@CDX2!1.64!42.19!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.62!40.59!MLXIPL;;chr20:55204351..55204377,+!p1@TFAP2C!1.57!46.12!TFAP2C;;chr11:61520075..61520136,+!p1@C11orf9!1.56!72.56!C11orf9;;chr14:38064590..38064606,-!p2@FOXA1!1.55!34.19!FOXA1;;chr1:201979703..201979721,+!p2@ELF3!1.51!31.73!ELF3;;chr2:16080659..16080685,+!p1@MYCN!1.48!29.03!MYCN;;chr18:19749541..19749557,+!p1@GATA6!1.46!84.74!GATA6;;chr19:33793430..33793447,-!p1@CEBPA!1.45!110.32!CEBPA;;chr8:102504651..102504683,+!p1@GRHL2!1.42!25.09!GRHL2;;chr13:28543285..28543314,-!p2@CDX2!1.41!24.97!CDX2;;chr11:34642612..34642646,+!p1@EHF!1.38!23.24!EHF;;chr1:42801540..42801562,-!p4@FOXJ3!1.38!22.88!FOXJ3;;chr2:171571827..171571853,+!p1@SP5!1.37!22.26!SP5;;chr13:28543388..28543406,-!p3@CDX2!1.34!21.03!CDX2;;chr1:209979467..209979494,-!p1@IRF6!1.33!23.00!IRF6;;chr17:45928521..45928539,-!p1@SP6!1.32!19.80!SP6;;chr15:96869511..96869525,+!p16@NR2F2!1.31!21.65!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.83!PROX1;;chrX:131547625..131547644,-!p4@MBNL3!1.28!17.96!MBNL3;;chr16:85932760..85932775,+!p1@IRF8!1.27!17.59!IRF8;;chr5:2751762..2751784,-!p1@IRX2!1.22!15.62!IRX2;;chr6:126221034..126221056,+!p13@NCOA7!1.22!15.62!NCOA7;;chr13:73633131..73633149,+!p1@KLF5!1.21!159.02!KLF5;;chr18:19749386..19749404,+!p2@GATA6!1.20!21.28!GATA6;;chr20:22564895..22564910,-!p1@FOXA2!1.16!13.53!FOXA2;;chr17:53342311..53342400,+!p1@HLF!1.15!15.00!HLF;;chr13:28543253..28543276,-!p5@CDX2!1.14!12.91!CDX2;;chr7:27205136..27205164,-!p1@HOXA9!1.14!12.79!HOXA9;;chr11:16419037..16419064,-!p3@SOX6!1.14!12.67!SOX6;;chr11:2291814..2291825,-!p2@ASCL2!1.12!12.18!ASCL2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.12!12.18!HOXC5;;chr5:124084493..124084524,-!p2@ZNF608!1.11!26.44!ZNF608;;chr19:926055..926068,+!p2@ARID3A!1.09!24.97!ARID3A;;chr8:76319876..76319926,+!p1@HNF4G!1.03!9.59!HNF4G;;chr9:138591319..138591340,-!p1@SOHLH1!1.02!9.47!SOHLH1;;chr2:25475120..25475176,-!p2@DNMT3A!0.99!12.05!DNMT3A;;chr12:103351444..103351461,+!p1@ASCL1!0.99!8.86!ASCL1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.41!PITX1;;chr3:71355163..71355209,-!p5@FOXP1!0.98!11.93!FOXP1;;chr7:27196267..27196311,-!p1@HOXA7!0.98!8.49!HOXA7;;chr19:926001..926046,+!p1@ARID3A!0.97!29.64!ARID3A;;chr12:121416455..121416479,+!p2@HNF1A!0.97!8.36!HNF1A;;chr20:50159198..50159299,-!p1@NFATC2!0.96!12.18!NFATC2;;chr11:65554528..65554546,+!p1@OVOL1!0.96!8.12!OVOL1;;chr10:97889464..97889494,+!p3@ZNF518A!0.95!15.13!ZNF518A;;chr10:8095593..8095625,+!p3@GATA3!0.95!9.47!GATA3;;chr19:46367576..46367592,+!p1@FOXA3!0.95!7.87!FOXA3;;chr19:58326246..58326262,-!p2@ZNF552!0.94!18.57!ZNF552;;chr17:36105042..36105060,-!p1@HNF1B!0.94!7.63!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.93!33.08!ETV4;;chr6:126240380..126240430,+!p2@NCOA7!0.93!20.17!NCOA7;;chr13:28543316..28543329,-!p4@CDX2!0.93!7.50!CDX2;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.50!OTX1;;chr3:24536253..24536328,-!p1@THRB!0.92!14.02!THRB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.44!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.91!20.79!EPAS1;;chr8:71316428..71316459,-!p2@NCOA2!0.91!12.18!NCOA2;;chr20:6748325..6748352,+!p1@BMP2!0.91!10.58!BMP2;;chr17:46687959..46688007,-!p2@HOXB7!0.91!10.09!HOXB7;;chr5:76383133..76383186,-!p2@ZBED3!0.90!14.76!ZBED3;;chr5:2751785..2751808,-!p2@IRX2!0.90!7.01!IRX2;;chr1:199996831..199996843,+!p4@NR5A2!0.89!6.76!NR5A2;;chr20:50418128..50418147,-!p2@SALL4!0.88!6.64!SALL4;;chr17:7197911..7197964,-!p1@YBX2!0.88!6.64!YBX2;;chr18:19749504..19749515,+!p5@GATA6!0.88!6.64!GATA6;;chr3:24536231..24536249,-!p4@THRB!0.88!6.52!THRB;;chr13:79177703..79177729,-!p2@POU4F1!0.88!6.52!POU4F1;;chr7:156803329..156803362,-!p1@MNX1!0.88!6.52!MNX1;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.60!NCOA4;;chr10:48355030..48355090,+!p1@ZNF488!0.86!8.12!ZNF488;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.19!GATA6;;chr11:65554563..65554576,+!p2@OVOL1!0.85!6.03!OVOL1;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.78!PITX1;;chr8:71316403..71316427,-!p6@NCOA2!0.82!6.89!NCOA2;;chr3:12330560..12330579,+!p1@PPARG!0.81!6.27!PPARG;;chrX:84498989..84499003,+!p1@ZNF711!0.80!7.50!ZNF711;;chr6:126240356..126240379,+!p7@NCOA7!0.80!6.64!NCOA7;;chr16:52581025..52581072,-!p1@TOX3!0.80!5.29!TOX3;;chr11:34642656..34642667,+!p2@EHF!0.80!5.29!EHF;;chr6:21597765..21597779,+!p2@SOX4!0.79!45.87!SOX4;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.6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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 67: | Line 44: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Intestinal%2520epithelial%2520cells%2520%2528polarized%2529%252c%2520donor1.CNhs10875.11246-116E4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11246-116E4 | |||
|is_a=EFO:0002091;;FF:0000080 | |||
|is_obsolete= | |||
|library_id=CNhs10875 | |||
|library_id_phase_based=2:CNhs10875 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11246 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GCCAAT.11246 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11246 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GCCAAT.11246 | |||
|name=Intestinal epithelial cells (polarized), donor1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=NCig10043,,, | |||
|profile_hcage=CNhs10875,LSID703,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=SRhi10002,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.025187642555139,0,0,0.109409456261597,0.173755361595775,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0.050375285110278,0,0,0,0,-0.153323010348428,0,0,0,0.025187642555139,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.050375285110278,0,-0.135409744181545,0,0,0,0,0,0,0,0,0.694479444131698,0,0,0,0,0,-0.0117008914886744,0,-0.00148237850776735,0,0,-0.046968342102819,0.050375285110278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050375285110278,0,0,0.0681962224520915,0,0,0.00226486920327546,0,0,-0.0911605421685179,0.025187642555139,0,0,0.115308534783949,-0.115687419961031,0,0,0,0,-0.00252536850286864,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0955099827348378,0,0.362019608701517,0,0,0,-0.108454936914796,-0.302268308382597,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.050375285110278,-0.00252536850286864,0,0,0,0,0.173755361595775,0.050375285110278,0,0.0955099827348378,0,0,0,0.0225486110624186,0.025187642555139,0.250566041418388,0.679793956383106,0.025187642555139,0,0.107884173051776,0,0.136392444904183,0,0,0.0955099827348378,0,0.050375285110278,0.0955099827348378,0,-0.128119866952565,0,0.0859798933148677,0,0,0,0,0.00656236147128835,0.466815548303858,0,-0.0873803803516225,0.0271657216574696,0,0.050375285110278,0,0,-0.00518129444068099,0,-0.120879483793741,-0.0323448832131394,-0.221611588102807,-0.505035522125255,0.00357062621789794,0,0,0,-0.608588992705854,-0.00355937178371279,0,0,-0.121779851751874,-0.13359462719324,0,0,-0.391044581551635,0,-0.362325009360866,0.03294412311036,0,0,0.050375285110278,0,0,0,0,0.050375285110278,0,0,0,0.11595121381951,0,-0.0323058242662977,0.296022738788396,0,0.297521421068279,0.781218526363532,0,-0.461153223971072,0,0.0420438517767594,0.480984771998955,0.0278894445834182,-0.0854518962667085,0.745602218794127,0,-0.302389727009913,-0.0790295780284393,0.12532748013631,-0.230330895568422,-0.147401849371139,-0.0944717368150095,0,-0.230165986301081,0.0754057480484951,0.101886400900356,-0.202156104988394,-0.0304656293960908,-0.327757504069933,-0.30621623504342,0.050375285110278,0.95986324163381,0.050375285110278,0.558048796741337,0,0,-0.118516260882931,0.00977735990839745,-0.434769022494068,0.0303772451548375,0.308691978039415,-0.282094462003748,0.00822246291074835,-0.159915031828316,0,-0.0592461948185015,0,0.208156981259094,0,-0.0258171245753379,0.502968773869657,0.138029529745645,0,0.187163261953559,0.0680481838268144,0.0477549913674189,-0.24336997267302,-0.237608715701882,0,0,-0.230494884446982,0.050375285110278,0,0,0.000483412617418619,0,0.278522724801661,-0.365736781434392,-0.0964631166513622,0,-0.0136821174633112,0.0553142452784718,0.043905679783774,0,0.0392268785056696,0.148976995123615,-0.000552731293013309,0.101076597895587,0,0.136526711063129,-0.224225040984825,0.10473679000898,-0.3268848226569,0.115308534783949,0.145652756991998,-0.218309262675925,0.131204533373847,-0.615184503194452,0.00202671332582249,-0.0881268324752877,0,-0.833169465408102,-0.50574277002575,0,-0.14772492250593,0,-0.16932245009733,0,0.130070142053905,0,-0.145359594129422,-0.125652587742726,-0.199256936796465,-0.198253963458003,0,-0.100251919865772,0.194555874433021,0.0955099827348378,0.0758979732524495,-0.034299201319818,0.583055204744242,-0.150367083334639,-0.00435336825958332,0.230248419114163,-0.0097233234945085,0,-0.251033084132796,0,0,0.241408126832799,-0.0273190565052944,0,0.1657753802823,-0.0124164717383208,0.194331221391096,0.124061364349287,0,0,0.319982226423695,0,0.454055796759373,0.621071377865497,0.0319051375970361,0.607216117724894,-0.202951056376478,0.0517975742363385,-0.0834351668991165,0,0,0.146115321703566,0,-0.273143020676144,0.0183163315647605,0,-0.0821100863392943,-0.116628112990133,0,0.0681962224520915,0,0,0,0,0,0,0,0,0,-0.303271094732585,-0.0311902425477067,0.050375285110278,-0.28538349429291,0,0.050375285110278,0,0,0.136392444904183,0,0,0,-0.761071897579605,-0.013922884823133,0.22526493074801,0.236218413981644,0,0,0,-0.00756642129438034,0.168361891499119,0,0.00452973840655091,0.050375285110278,0,0,0,-0.0861409897892114,0,0,0,0,-0.00735517194338604,-0.0169236839637071,0,0,0,-0.27695440160179,0,0,0,0,-0.0969132344739279,0,0,0.0504533468863412,0,-0.211081839799387,0.290016574047002,0,-0.123201917109921,-0.243040373581461,0.193763059288123,0,0.050375285110278,0.110251321803955,0,0,0.355233996419269,0.0683827469816894,0,0,0,0,0,0,0,0,0.520292024137693,0.203059965626083,0,0,0,0,0,0,0,0,0,0,0.00330720195994116,0.14780838112571,0,0,0,0,0,0.025187642555139,0,0.0714039596559347,-0.114501126784466,0,0,0.063847008795633,0,0,0,0,0,0.188173187429603,0,0,0,0,0,-0.00148237850776735,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050436275560327,-0.316110495488917,0,0.050375285110278,0,0,0,0.173755361595775,0,-0.27483329820609,0,0,0,0,0.0598709878867975,0.050375285110278,0,0,0.309984778941358,0,0.109409456261597,0,0,0,0,0,0.0955099827348378,0,0,0,0,0,0,0,1.01481954160918,0,0,0,0.14876071053414,0.025187642555139,0,0,0.168166710013982,0,-0.191697533238072,-0.0304242916417649,0,0,-0.0357652001914895,0,0,0,0,0,0,0.07273806660102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.061367927484915,0,0.050375285110278,0,0,0,0,0,-0.0979578962680575,0,0,-0.0238365873484349,0,0,0,0,0.050375285110278,0,-0.0227907016343041,0.041643280836906,-0.094657336909376,0,0,0,-0.029197929927316,0,0,-0.000652681018793677,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.050375285110278,0,0,0.0681962224520915,0,0,0,0,0,0,0,0,0,0,0.050375285110278,0,0,0,0,0,0,0,0,0.34828234642443,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.050375285110278,0,0,0,0,0,0,0,-0.00882372072027755,0.050375285110278,0,0,0,0,0,0,0,0,0,0,0,0.0681962224520915,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0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| |||
|rna_box=116 | |||
|rna_catalog_number=N/A | |||
|rna_concentration=2.5 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.92 | |||
|rna_od260/280=2.06 | |||
|rna_position=E4 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=1.16E+06 | |||
|rna_weight_ug=62.7 | |||
|rnaseq_library_id=SRhi10002.GCCAAT | |||
|sample_age=19 | |||
|sample_category=primary cells | |||
|sample_cell_catalog=CS-ABI-519 | |||
|sample_cell_line= | |||
|sample_cell_lot=lot:RI519 | |||
|sample_cell_type=epithelial cell, intestinal | |||
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest) | |||
|sample_company=Cell systems | |||
|sample_description= | |||
|sample_dev_stage=19 years old adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=C | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.57795209560654e-245!GO:0043231;intracellular membrane-bound organelle;4.52702985285417e-201!GO:0043227;membrane-bound organelle;4.52702985285417e-201!GO:0043226;organelle;3.67374211664104e-199!GO:0043229;intracellular organelle;1.00717537494139e-198!GO:0005737;cytoplasm;1.38336508414061e-197!GO:0044444;cytoplasmic part;2.70188647205515e-151!GO:0044422;organelle part;1.92582620155349e-146!GO:0044446;intracellular organelle part;7.20517549143654e-145!GO:0044237;cellular metabolic process;2.84349815643963e-98!GO:0044238;primary metabolic process;2.3954923846498e-96!GO:0032991;macromolecular complex;4.28878220247674e-86!GO:0030529;ribonucleoprotein complex;2.0693659334888e-78!GO:0005739;mitochondrion;1.31069253006815e-77!GO:0043170;macromolecule metabolic process;7.74750980524231e-74!GO:0003723;RNA binding;4.00106999094462e-71!GO:0043233;organelle lumen;2.79177830179996e-70!GO:0031974;membrane-enclosed lumen;2.79177830179996e-70!GO:0044428;nuclear part;8.2726407837388e-69!GO:0005634;nucleus;5.05196104800818e-68!GO:0031090;organelle membrane;1.87668410054142e-57!GO:0005515;protein binding;1.56271040808245e-56!GO:0044429;mitochondrial part;1.44026446921262e-48!GO:0005840;ribosome;7.46553598672654e-47!GO:0006396;RNA processing;9.24429191297577e-47!GO:0033036;macromolecule localization;1.19407190924561e-46!GO:0009058;biosynthetic process;3.83401336514747e-46!GO:0015031;protein transport;1.58695481194972e-45!GO:0019538;protein metabolic process;1.83703420284957e-45!GO:0031975;envelope;8.93312230194058e-45!GO:0031967;organelle envelope;8.93312230194058e-45!GO:0006412;translation;1.18946189207963e-44!GO:0008104;protein localization;1.70431893983436e-42!GO:0045184;establishment of protein localization;3.98683322379957e-42!GO:0043234;protein complex;7.56179308146266e-42!GO:0016043;cellular component organization and biogenesis;1.16942636955906e-41!GO:0044249;cellular biosynthetic process;3.0775780903123e-40!GO:0044267;cellular protein metabolic process;5.84515291623501e-40!GO:0003735;structural constituent of ribosome;9.93738998218043e-40!GO:0044260;cellular macromolecule metabolic process;1.00238144273112e-39!GO:0031981;nuclear lumen;2.1208820223655e-39!GO:0016071;mRNA metabolic process;2.50594556713211e-37!GO:0009059;macromolecule biosynthetic process;1.47335207059433e-36!GO:0005829;cytosol;1.63341304413414e-36!GO:0046907;intracellular transport;1.06432485704443e-34!GO:0008380;RNA splicing;6.30432184652349e-34!GO:0043283;biopolymer metabolic process;1.42094777550306e-33!GO:0033279;ribosomal subunit;2.38298613290058e-33!GO:0006397;mRNA processing;1.50498457988646e-32!GO:0010467;gene expression;1.92625062885603e-31!GO:0043228;non-membrane-bound organelle;3.96855687490491e-31!GO:0043232;intracellular non-membrane-bound organelle;3.96855687490491e-31!GO:0065003;macromolecular complex assembly;7.14702810358638e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.95608625785102e-31!GO:0005740;mitochondrial envelope;2.24354582178222e-30!GO:0006886;intracellular protein transport;3.87182482815768e-30!GO:0019866;organelle inner membrane;1.95990606567558e-29!GO:0006996;organelle organization and biogenesis;2.04069959669403e-29!GO:0031966;mitochondrial membrane;1.00223355299953e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.80292889627293e-28!GO:0022607;cellular component assembly;3.81422844728476e-27!GO:0005743;mitochondrial inner membrane;5.79898822155453e-27!GO:0006259;DNA metabolic process;6.4873317993122e-27!GO:0012505;endomembrane system;1.05306078493814e-25!GO:0005681;spliceosome;7.39360715891356e-25!GO:0007049;cell cycle;1.01407754166722e-24!GO:0005783;endoplasmic reticulum;1.08236645626481e-24!GO:0006119;oxidative phosphorylation;1.69885902124191e-23!GO:0051641;cellular localization;3.10317519814548e-23!GO:0005654;nucleoplasm;4.66150778513902e-23!GO:0051649;establishment of cellular localization;5.819227279257e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.35202913055997e-23!GO:0031980;mitochondrial lumen;1.64032617348703e-21!GO:0005759;mitochondrial matrix;1.64032617348703e-21!GO:0044432;endoplasmic reticulum part;4.11090426499162e-21!GO:0044248;cellular catabolic process;1.18566276772261e-20!GO:0000166;nucleotide binding;3.99155483733113e-19!GO:0003676;nucleic acid binding;4.82107900821615e-19!GO:0051186;cofactor metabolic process;5.22774599942977e-19!GO:0044451;nucleoplasm part;5.22774599942977e-19!GO:0044455;mitochondrial membrane part;1.90843105824649e-18!GO:0044265;cellular macromolecule catabolic process;3.38657570076784e-18!GO:0006974;response to DNA damage stimulus;6.1066856137495e-18!GO:0015935;small ribosomal subunit;8.1351582768904e-18!GO:0044445;cytosolic part;1.03520959241753e-17!GO:0022402;cell cycle process;1.17789744461097e-17!GO:0016874;ligase activity;2.10048063947564e-17!GO:0016462;pyrophosphatase activity;3.17030509632022e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;3.96643905517015e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.07801187445202e-17!GO:0000278;mitotic cell cycle;4.59624885646333e-17!GO:0048770;pigment granule;4.73564142518385e-17!GO:0042470;melanosome;4.73564142518385e-17!GO:0006732;coenzyme metabolic process;6.22955140741105e-17!GO:0022618;protein-RNA complex assembly;6.34807048660618e-17!GO:0017111;nucleoside-triphosphatase activity;1.44214574055977e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.56886167329262e-16!GO:0015934;large ribosomal subunit;1.72254413603322e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.08675360702432e-16!GO:0006457;protein folding;3.17607333177937e-16!GO:0005789;endoplasmic reticulum membrane;3.71539935361561e-16!GO:0009057;macromolecule catabolic process;4.09011208288704e-16!GO:0005694;chromosome;4.35577349572176e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.57021808388611e-16!GO:0005746;mitochondrial respiratory chain;7.31849620174228e-16!GO:0005730;nucleolus;1.3730883152367e-15!GO:0043285;biopolymer catabolic process;2.01375529484989e-15!GO:0009056;catabolic process;2.40365919303341e-15!GO:0006605;protein targeting;5.72440431893155e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.09076639778709e-15!GO:0003954;NADH dehydrogenase activity;6.09076639778709e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.09076639778709e-15!GO:0006281;DNA repair;9.048261598861e-15!GO:0005761;mitochondrial ribosome;9.9225087522317e-15!GO:0000313;organellar ribosome;9.9225087522317e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.98572506725561e-15!GO:0044257;cellular protein catabolic process;1.31831377783785e-14!GO:0005635;nuclear envelope;1.5322187360495e-14!GO:0005794;Golgi apparatus;1.89488893456604e-14!GO:0019941;modification-dependent protein catabolic process;2.13452742048393e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.13452742048393e-14!GO:0009719;response to endogenous stimulus;2.75160100657486e-14!GO:0044427;chromosomal part;2.75160100657486e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.4464289059372e-14!GO:0031965;nuclear membrane;8.19251768102662e-14!GO:0022403;cell cycle phase;9.02299202038607e-14!GO:0008135;translation factor activity, nucleic acid binding;1.54210802326686e-13!GO:0048193;Golgi vesicle transport;1.95769659202325e-13!GO:0030163;protein catabolic process;3.11558560637701e-13!GO:0006512;ubiquitin cycle;4.17538661158803e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.17538661158803e-13!GO:0042773;ATP synthesis coupled electron transport;4.17538661158803e-13!GO:0044453;nuclear membrane part;5.54875957937896e-13!GO:0042623;ATPase activity, coupled;5.62576365286541e-13!GO:0016070;RNA metabolic process;6.00074383171004e-13!GO:0008134;transcription factor binding;6.002649629125e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.53867190262045e-13!GO:0045271;respiratory chain complex I;6.53867190262045e-13!GO:0005747;mitochondrial respiratory chain complex I;6.53867190262045e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;6.66443642938369e-13!GO:0000375;RNA splicing, via transesterification reactions;6.66443642938369e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.66443642938369e-13!GO:0016192;vesicle-mediated transport;6.86849948522033e-13!GO:0017076;purine nucleotide binding;7.72443762914026e-13!GO:0032553;ribonucleotide binding;8.50750876643468e-13!GO:0032555;purine ribonucleotide binding;8.50750876643468e-13!GO:0051082;unfolded protein binding;1.51914998131958e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.56212492426892e-12!GO:0051276;chromosome organization and biogenesis;1.58939899596348e-12!GO:0009055;electron carrier activity;1.59727776637958e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.6762865209607e-12!GO:0016887;ATPase activity;1.8114713729883e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.16409216893599e-12!GO:0051301;cell division;3.25609350370067e-12!GO:0000087;M phase of mitotic cell cycle;3.79059668749935e-12!GO:0016604;nuclear body;5.49208101231358e-12!GO:0007067;mitosis;5.91442176411302e-12!GO:0042254;ribosome biogenesis and assembly;6.63522448188496e-12!GO:0006260;DNA replication;1.20097927888819e-11!GO:0050657;nucleic acid transport;2.52038293267506e-11!GO:0051236;establishment of RNA localization;2.52038293267506e-11!GO:0050658;RNA transport;2.52038293267506e-11!GO:0006403;RNA localization;3.53794050010944e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.95987204673056e-11!GO:0005643;nuclear pore;4.7775726447394e-11!GO:0005524;ATP binding;4.84901654126533e-11!GO:0032559;adenyl ribonucleotide binding;5.05579373986926e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.78267965523822e-11!GO:0030554;adenyl nucleotide binding;6.21718434809019e-11!GO:0065002;intracellular protein transport across a membrane;6.6557743592181e-11!GO:0016491;oxidoreductase activity;8.43120016630521e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.46535441695366e-11!GO:0006446;regulation of translational initiation;9.97722400467726e-11!GO:0006461;protein complex assembly;1.26271631399752e-10!GO:0006413;translational initiation;2.15455192719259e-10!GO:0004386;helicase activity;2.42919423581406e-10!GO:0008565;protein transporter activity;2.61919238979571e-10!GO:0000279;M phase;2.7562483817347e-10!GO:0006913;nucleocytoplasmic transport;2.79807381399698e-10!GO:0005793;ER-Golgi intermediate compartment;4.19246982610486e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.36532816659817e-10!GO:0051169;nuclear transport;4.6649665002414e-10!GO:0003743;translation initiation factor activity;4.85695807379009e-10!GO:0016607;nuclear speck;1.30655133901218e-09!GO:0015986;ATP synthesis coupled proton transport;1.36716241407162e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.36716241407162e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.37025170596283e-09!GO:0051028;mRNA transport;1.73194437471637e-09!GO:0043412;biopolymer modification;2.66214086350516e-09!GO:0046930;pore complex;2.67226395231914e-09!GO:0006915;apoptosis;2.78310366656968e-09!GO:0009060;aerobic respiration;3.0472128237828e-09!GO:0012501;programmed cell death;3.2369709735692e-09!GO:0016787;hydrolase activity;4.5646572368197e-09!GO:0006399;tRNA metabolic process;4.72270188079047e-09!GO:0006323;DNA packaging;4.80586338330749e-09!GO:0008026;ATP-dependent helicase activity;5.12884566824647e-09!GO:0051726;regulation of cell cycle;6.47937939838071e-09!GO:0009259;ribonucleotide metabolic process;7.20700515392911e-09!GO:0006082;organic acid metabolic process;8.25018636662216e-09!GO:0051188;cofactor biosynthetic process;8.67154572107829e-09!GO:0019752;carboxylic acid metabolic process;1.13795255990444e-08!GO:0000074;regulation of progression through cell cycle;1.18476570266525e-08!GO:0006163;purine nucleotide metabolic process;1.35176341324281e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.91821189096822e-08!GO:0008219;cell death;1.91821189096822e-08!GO:0016265;death;1.91821189096822e-08!GO:0044255;cellular lipid metabolic process;1.91821189096822e-08!GO:0045333;cellular respiration;2.24123627173681e-08!GO:0019829;cation-transporting ATPase activity;2.98384413131603e-08!GO:0006754;ATP biosynthetic process;3.51784736387942e-08!GO:0006753;nucleoside phosphate metabolic process;3.51784736387942e-08!GO:0009150;purine ribonucleotide metabolic process;4.16940882126805e-08!GO:0000785;chromatin;4.26176809958086e-08!GO:0046034;ATP metabolic process;4.45990639447841e-08!GO:0005773;vacuole;4.45990639447841e-08!GO:0006099;tricarboxylic acid cycle;4.72054517238553e-08!GO:0046356;acetyl-CoA catabolic process;4.72054517238553e-08!GO:0006629;lipid metabolic process;5.03029240820796e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.03029240820796e-08!GO:0005768;endosome;5.10929644984432e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.26634335851941e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.43822119485822e-08!GO:0030532;small nuclear ribonucleoprotein complex;6.39682991489975e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.52629407073883e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.52629407073883e-08!GO:0006164;purine nucleotide biosynthetic process;6.58416754386816e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.64716395365943e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.64716395365943e-08!GO:0009108;coenzyme biosynthetic process;6.75832194891974e-08!GO:0006464;protein modification process;6.87054889326317e-08!GO:0006752;group transfer coenzyme metabolic process;6.94983579424621e-08!GO:0031982;vesicle;7.17472434256322e-08!GO:0006366;transcription from RNA polymerase II promoter;7.17472434256322e-08!GO:0006084;acetyl-CoA metabolic process;7.41220813485309e-08!GO:0016740;transferase activity;8.47174338086143e-08!GO:0031988;membrane-bound vesicle;8.47174338086143e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.47174338086143e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.47174338086143e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.83529562276446e-08!GO:0008639;small protein conjugating enzyme activity;1.02730502797838e-07!GO:0009260;ribonucleotide biosynthetic process;1.09307365122287e-07!GO:0009141;nucleoside triphosphate metabolic process;1.1106543122701e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.13331162122967e-07!GO:0031410;cytoplasmic vesicle;1.14054537030517e-07!GO:0006364;rRNA processing;1.20298072490777e-07!GO:0051187;cofactor catabolic process;1.24267520036679e-07!GO:0019787;small conjugating protein ligase activity;1.68933224525616e-07!GO:0004842;ubiquitin-protein ligase activity;1.73060629410369e-07!GO:0016072;rRNA metabolic process;1.79433049352317e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.90286591445788e-07!GO:0017038;protein import;2.0900142370345e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.0900142370345e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.0900142370345e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.0900142370345e-07!GO:0003712;transcription cofactor activity;2.28371647838458e-07!GO:0043038;amino acid activation;3.55625579287814e-07!GO:0006418;tRNA aminoacylation for protein translation;3.55625579287814e-07!GO:0043039;tRNA aminoacylation;3.55625579287814e-07!GO:0051329;interphase of mitotic cell cycle;3.75820436396558e-07!GO:0009109;coenzyme catabolic process;3.93925675650143e-07!GO:0006333;chromatin assembly or disassembly;4.27033734761153e-07!GO:0051246;regulation of protein metabolic process;4.67313985530782e-07!GO:0048475;coated membrane;8.63911604849791e-07!GO:0030117;membrane coat;8.63911604849791e-07!GO:0016779;nucleotidyltransferase activity;9.15442108816162e-07!GO:0000323;lytic vacuole;9.99402688950184e-07!GO:0005764;lysosome;9.99402688950184e-07!GO:0030120;vesicle coat;1.13269620113153e-06!GO:0030662;coated vesicle membrane;1.13269620113153e-06!GO:0042981;regulation of apoptosis;1.35563931453756e-06!GO:0006091;generation of precursor metabolites and energy;1.4317481857967e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.46415600168443e-06!GO:0065004;protein-DNA complex assembly;1.56572193516273e-06!GO:0043687;post-translational protein modification;1.74248368032259e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.85443890356539e-06!GO:0043623;cellular protein complex assembly;1.88943880340681e-06!GO:0045259;proton-transporting ATP synthase complex;2.02061704833144e-06!GO:0043566;structure-specific DNA binding;2.0290095497225e-06!GO:0000245;spliceosome assembly;2.05810257440747e-06!GO:0043067;regulation of programmed cell death;2.29534918159629e-06!GO:0051325;interphase;2.3424988525114e-06!GO:0016881;acid-amino acid ligase activity;2.56643939615715e-06!GO:0006613;cotranslational protein targeting to membrane;3.20369258822673e-06!GO:0016126;sterol biosynthetic process;3.95986880522694e-06!GO:0008654;phospholipid biosynthetic process;4.02827546356964e-06!GO:0005788;endoplasmic reticulum lumen;4.07465248740823e-06!GO:0016853;isomerase activity;4.17983597826582e-06!GO:0008610;lipid biosynthetic process;4.23430061235399e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.40865046239849e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.04856260038641e-06!GO:0003724;RNA helicase activity;5.14733957820164e-06!GO:0007005;mitochondrion organization and biogenesis;6.80423771678658e-06!GO:0004298;threonine endopeptidase activity;7.22117821141895e-06!GO:0016568;chromatin modification;8.30270788003319e-06!GO:0044431;Golgi apparatus part;8.73534605747118e-06!GO:0006695;cholesterol biosynthetic process;9.20162233810646e-06!GO:0006261;DNA-dependent DNA replication;9.60006150311651e-06!GO:0003697;single-stranded DNA binding;1.06160392744917e-05!GO:0048037;cofactor binding;1.12928990120655e-05!GO:0005770;late endosome;1.18221129498075e-05!GO:0050662;coenzyme binding;1.53379065508201e-05!GO:0032446;protein modification by small protein conjugation;1.56941016557042e-05!GO:0009117;nucleotide metabolic process;1.77809292352587e-05!GO:0007051;spindle organization and biogenesis;1.81891249115364e-05!GO:0043021;ribonucleoprotein binding;1.95673261436947e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.01448888518716e-05!GO:0044440;endosomal part;2.01448888518716e-05!GO:0010008;endosome membrane;2.01448888518716e-05!GO:0006066;alcohol metabolic process;2.03311307703629e-05!GO:0015630;microtubule cytoskeleton;2.41036584115447e-05!GO:0000775;chromosome, pericentric region;2.41050860884186e-05!GO:0005667;transcription factor complex;2.41185063340444e-05!GO:0005762;mitochondrial large ribosomal subunit;2.59350334830304e-05!GO:0000315;organellar large ribosomal subunit;2.59350334830304e-05!GO:0016567;protein ubiquitination;2.62774720269659e-05!GO:0043069;negative regulation of programmed cell death;2.64226981096002e-05!GO:0051168;nuclear export;2.77357141763034e-05!GO:0016125;sterol metabolic process;2.7834843645425e-05!GO:0005657;replication fork;3.12157471983182e-05!GO:0043066;negative regulation of apoptosis;3.31619598631133e-05!GO:0051170;nuclear import;3.38282056237206e-05!GO:0005819;spindle;4.47443133884177e-05!GO:0042802;identical protein binding;4.77472739971954e-05!GO:0045454;cell redox homeostasis;6.41234277007268e-05!GO:0006793;phosphorus metabolic process;6.80756454274822e-05!GO:0006796;phosphate metabolic process;6.80756454274822e-05!GO:0006612;protein targeting to membrane;8.46436508572128e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.95246351193912e-05!GO:0015399;primary active transmembrane transporter activity;9.95246351193912e-05!GO:0000314;organellar small ribosomal subunit;0.000101512298970664!GO:0005763;mitochondrial small ribosomal subunit;0.000101512298970664!GO:0006606;protein import into nucleus;0.000107623540362758!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000124590861908393!GO:0006334;nucleosome assembly;0.00012908326579648!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.000137595157948204!GO:0003713;transcription coactivator activity;0.000154666458519541!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000160773753058542!GO:0015980;energy derivation by oxidation of organic compounds;0.000161144321431654!GO:0016363;nuclear matrix;0.000161144321431654!GO:0005798;Golgi-associated vesicle;0.000167207402328988!GO:0048523;negative regulation of cellular process;0.000168124146445584!GO:0050794;regulation of cellular process;0.000168548961538914!GO:0031497;chromatin assembly;0.000178853869899753!GO:0051427;hormone receptor binding;0.000179566559850393!GO:0005777;peroxisome;0.000189912103821564!GO:0042579;microbody;0.000189912103821564!GO:0006950;response to stress;0.000189912103821564!GO:0005048;signal sequence binding;0.000192986329182688!GO:0008186;RNA-dependent ATPase activity;0.00019756320055757!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.000202621493743663!GO:0044262;cellular carbohydrate metabolic process;0.000220883993097804!GO:0006520;amino acid metabolic process;0.000240869972258141!GO:0030867;rough endoplasmic reticulum membrane;0.000261090547608225!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000268739117491057!GO:0005525;GTP binding;0.000295438184240597!GO:0006807;nitrogen compound metabolic process;0.000297934402228936!GO:0000139;Golgi membrane;0.000305582923508669!GO:0005813;centrosome;0.000312028332637114!GO:0016563;transcription activator activity;0.000312028332637114!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000312285963633825!GO:0003899;DNA-directed RNA polymerase activity;0.000341401884833022!GO:0035257;nuclear hormone receptor binding;0.000351971409264632!GO:0008203;cholesterol metabolic process;0.000352854139657636!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000404281894248788!GO:0005815;microtubule organizing center;0.000436344436021894!GO:0031968;organelle outer membrane;0.000455931559357297!GO:0031252;leading edge;0.000461030259104899!GO:0043681;protein import into mitochondrion;0.000482220095663536!GO:0008094;DNA-dependent ATPase activity;0.000501866928017667!GO:0015992;proton transport;0.000524369241171928!GO:0048471;perinuclear region of cytoplasm;0.000536051047719292!GO:0000776;kinetochore;0.000578745310101021!GO:0051287;NAD binding;0.000588038095054045!GO:0006626;protein targeting to mitochondrion;0.000588038095054045!GO:0022890;inorganic cation transmembrane transporter activity;0.000588038095054045!GO:0000075;cell cycle checkpoint;0.000588421986289851!GO:0004004;ATP-dependent RNA helicase activity;0.000588421986289851!GO:0016310;phosphorylation;0.000589799917304949!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000597259091245792!GO:0006302;double-strand break repair;0.000613187841005156!GO:0006818;hydrogen transport;0.0006183132596881!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000622250788558515!GO:0019899;enzyme binding;0.000674540976386094!GO:0005885;Arp2/3 protein complex;0.000678838168054235!GO:0045786;negative regulation of progression through cell cycle;0.00069648646731051!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000700451813574681!GO:0016741;transferase activity, transferring one-carbon groups;0.000701377688016038!GO:0019867;outer membrane;0.00072050680709361!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000754016457581867!GO:0051789;response to protein stimulus;0.000769749615287916!GO:0006986;response to unfolded protein;0.000769749615287916!GO:0046483;heterocycle metabolic process;0.000777995076892124!GO:0006402;mRNA catabolic process;0.000779323911655359!GO:0003690;double-stranded DNA binding;0.000803795332926195!GO:0003924;GTPase activity;0.000808147693033865!GO:0000151;ubiquitin ligase complex;0.000824594329526864!GO:0051920;peroxiredoxin activity;0.000826826271704006!GO:0005741;mitochondrial outer membrane;0.000858204085186587!GO:0008168;methyltransferase activity;0.000863302545491557!GO:0006519;amino acid and derivative metabolic process;0.00087470958230699!GO:0005769;early endosome;0.000883023400940427!GO:0043492;ATPase activity, coupled to movement of substances;0.000894790859059539!GO:0009308;amine metabolic process;0.000902527660475223!GO:0016859;cis-trans isomerase activity;0.000905046657099536!GO:0048500;signal recognition particle;0.000963183408830266!GO:0006891;intra-Golgi vesicle-mediated transport;0.00100458954651061!GO:0006916;anti-apoptosis;0.00106560334187944!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00117870039732193!GO:0046474;glycerophospholipid biosynthetic process;0.00119250166409515!GO:0033116;ER-Golgi intermediate compartment membrane;0.00122515093081345!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00125690230872295!GO:0006979;response to oxidative stress;0.00125796427821045!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00129381110923606!GO:0016408;C-acyltransferase activity;0.00132849294441245!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00132849294441245!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00132849294441245!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00132849294441245!GO:0046467;membrane lipid biosynthetic process;0.00133014976937899!GO:0006643;membrane lipid metabolic process;0.00135050847023487!GO:0000059;protein import into nucleus, docking;0.00143022214922679!GO:0030118;clathrin coat;0.00158728435900813!GO:0006405;RNA export from nucleus;0.00160600640544104!GO:0048519;negative regulation of biological process;0.00167984141870309!GO:0009165;nucleotide biosynthetic process;0.00171305331784903!GO:0032508;DNA duplex unwinding;0.00171407096352699!GO:0032392;DNA geometric change;0.00171407096352699!GO:0005684;U2-dependent spliceosome;0.00180956855071635!GO:0005791;rough endoplasmic reticulum;0.00181653177488258!GO:0051659;maintenance of mitochondrion localization;0.0018173912235166!GO:0051657;maintenance of organelle localization;0.0018173912235166!GO:0051252;regulation of RNA metabolic process;0.00185965825837042!GO:0006401;RNA catabolic process;0.00189923544713651!GO:0006414;translational elongation;0.00193347665066408!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00194157341031759!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0019802882636772!GO:0007010;cytoskeleton organization and biogenesis;0.00202101422085153!GO:0016044;membrane organization and biogenesis;0.00210314941315911!GO:0008312;7S RNA binding;0.00211307891673872!GO:0005905;coated pit;0.00214923326814616!GO:0031324;negative regulation of cellular metabolic process;0.00221797741532795!GO:0030133;transport vesicle;0.00222153998250925!GO:0030036;actin cytoskeleton organization and biogenesis;0.00228066381015953!GO:0007059;chromosome segregation;0.00241904203472605!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00241904203472605!GO:0045047;protein targeting to ER;0.00241904203472605!GO:0003678;DNA helicase activity;0.00247848145887863!GO:0000082;G1/S transition of mitotic cell cycle;0.00254326788196655!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00255921507481422!GO:0016564;transcription repressor activity;0.0026106006496277!GO:0046489;phosphoinositide biosynthetic process;0.00263955960918109!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00269048153346282!GO:0051052;regulation of DNA metabolic process;0.00274315662994442!GO:0005774;vacuolar membrane;0.00274873696057196!GO:0005975;carbohydrate metabolic process;0.00275164056520275!GO:0005637;nuclear inner membrane;0.00278145784014479!GO:0032561;guanyl ribonucleotide binding;0.00281581593248641!GO:0019001;guanyl nucleotide binding;0.00281581593248641!GO:0008202;steroid metabolic process;0.00284713395232656!GO:0030658;transport vesicle membrane;0.00284713395232656!GO:0048487;beta-tubulin binding;0.00284713395232656!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00284713395232656!GO:0008033;tRNA processing;0.0029021239337456!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00292663315528872!GO:0046983;protein dimerization activity;0.00309283181106259!GO:0009892;negative regulation of metabolic process;0.00311938305560298!GO:0044452;nucleolar part;0.00312766201438991!GO:0006650;glycerophospholipid metabolic process;0.00314583631386993!GO:0030176;integral to endoplasmic reticulum membrane;0.0031929374029368!GO:0019843;rRNA binding;0.00321556338913755!GO:0000049;tRNA binding;0.0033066213108475!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00332027514165503!GO:0003682;chromatin binding;0.00333677953233932!GO:0006268;DNA unwinding during replication;0.00341022109648111!GO:0003729;mRNA binding;0.00352306445833965!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00372080096111649!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00372080096111649!GO:0008092;cytoskeletal protein binding;0.00381638066980384!GO:0016197;endosome transport;0.0039126135838112!GO:0016746;transferase activity, transferring acyl groups;0.00426443018652443!GO:0003714;transcription corepressor activity;0.00468882174304571!GO:0007040;lysosome organization and biogenesis;0.00477481770688191!GO:0006839;mitochondrial transport;0.00477481770688191!GO:0030119;AP-type membrane coat adaptor complex;0.00490672342430656!GO:0005996;monosaccharide metabolic process;0.00500369165571193!GO:0030659;cytoplasmic vesicle membrane;0.00504088167579359!GO:0043488;regulation of mRNA stability;0.00514738771000834!GO:0043487;regulation of RNA stability;0.00514738771000834!GO:0032787;monocarboxylic acid metabolic process;0.00541659274034883!GO:0008415;acyltransferase activity;0.00541931949337167!GO:0042157;lipoprotein metabolic process;0.00549920661730293!GO:0008139;nuclear localization sequence binding;0.00558526152785749!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.00585748595542057!GO:0007033;vacuole organization and biogenesis;0.00585748595542057!GO:0030131;clathrin adaptor complex;0.00602404841977987!GO:0008652;amino acid biosynthetic process;0.00647880611026635!GO:0016272;prefoldin complex;0.00658559304548226!GO:0019318;hexose metabolic process;0.00664616957473921!GO:0006611;protein export from nucleus;0.00690491842422122!GO:0016407;acetyltransferase activity;0.00697152997852148!GO:0005758;mitochondrial intermembrane space;0.00710305833372988!GO:0051539;4 iron, 4 sulfur cluster binding;0.00710305833372988!GO:0006383;transcription from RNA polymerase III promoter;0.00713078194290516!GO:0030660;Golgi-associated vesicle membrane;0.00714167604727489!GO:0030880;RNA polymerase complex;0.00731238025619007!GO:0030134;ER to Golgi transport vesicle;0.0073741463864341!GO:0007088;regulation of mitosis;0.00758838528620626!GO:0043022;ribosome binding;0.00770131231236111!GO:0007052;mitotic spindle organization and biogenesis;0.00776320296347619!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00776320296347619!GO:0044433;cytoplasmic vesicle part;0.00793701749078813!GO:0006007;glucose catabolic process;0.00815177740430271!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00819196100858551!GO:0030663;COPI coated vesicle membrane;0.00820158865683483!GO:0030126;COPI vesicle coat;0.00820158865683483!GO:0006644;phospholipid metabolic process;0.0083528050112271!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00837765169210973!GO:0044437;vacuolar part;0.00849511274094933!GO:0065009;regulation of a molecular function;0.00850128545039195!GO:0007264;small GTPase mediated signal transduction;0.00853371329171451!GO:0012506;vesicle membrane;0.00863428431781927!GO:0004177;aminopeptidase activity;0.008639354906508!GO:0008629;induction of apoptosis by intracellular signals;0.00864486743877758!GO:0000086;G2/M transition of mitotic cell cycle;0.00864874352390014!GO:0051087;chaperone binding;0.00871630981157432!GO:0008022;protein C-terminus binding;0.00883455803123846!GO:0003746;translation elongation factor activity;0.00884197913504504!GO:0016584;nucleosome positioning;0.0089157171833657!GO:0006595;polyamine metabolic process;0.00894497096883649!GO:0006767;water-soluble vitamin metabolic process;0.00924502404370707!GO:0045045;secretory pathway;0.00935242046383486!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00936605171095091!GO:0031647;regulation of protein stability;0.00942579252120417!GO:0006417;regulation of translation;0.00953565537470491!GO:0004527;exonuclease activity;0.00972804683033537!GO:0030029;actin filament-based process;0.00972804683033537!GO:0030139;endocytic vesicle;0.00988930356230365!GO:0030127;COPII vesicle coat;0.0100983067320221!GO:0012507;ER to Golgi transport vesicle membrane;0.0100983067320221!GO:0030132;clathrin coat of coated pit;0.0100983067320221!GO:0001889;liver development;0.0102997344361158!GO:0051017;actin filament bundle formation;0.0106873858144704!GO:0006749;glutathione metabolic process;0.0110348336524628!GO:0050789;regulation of biological process;0.0110575708537755!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0112006704856187!GO:0031124;mRNA 3'-end processing;0.0115853770485794!GO:0000786;nucleosome;0.0118606003551472!GO:0006310;DNA recombination;0.012192782511056!GO:0050750;low-density lipoprotein receptor binding;0.0122927095297332!GO:0004185;serine carboxypeptidase activity;0.0124327303940521!GO:0005832;chaperonin-containing T-complex;0.0130967942347509!GO:0006672;ceramide metabolic process;0.0130983843568967!GO:0008234;cysteine-type peptidase activity;0.0131692548859644!GO:0007017;microtubule-based process;0.0132611950294947!GO:0006769;nicotinamide metabolic process;0.0133688764720856!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0135259176008648!GO:0000428;DNA-directed RNA polymerase complex;0.0135259176008648!GO:0004576;oligosaccharyl transferase activity;0.0138726493580481!GO:0006338;chromatin remodeling;0.0139674454937919!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0144324198075352!GO:0046519;sphingoid metabolic process;0.0147107736075455!GO:0035258;steroid hormone receptor binding;0.014809182995258!GO:0007093;mitotic cell cycle checkpoint;0.0157453545298014!GO:0033673;negative regulation of kinase activity;0.0160785171550485!GO:0006469;negative regulation of protein kinase activity;0.0160785171550485!GO:0000922;spindle pole;0.016203003793247!GO:0008299;isoprenoid biosynthetic process;0.0163963508466687!GO:0019222;regulation of metabolic process;0.0165012416230322!GO:0006352;transcription initiation;0.0165520891792385!GO:0006118;electron transport;0.0168114619898316!GO:0031970;organelle envelope lumen;0.0168389348595641!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.017145539600401!GO:0015002;heme-copper terminal oxidase activity;0.017145539600401!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.017145539600401!GO:0004129;cytochrome-c oxidase activity;0.017145539600401!GO:0005874;microtubule;0.017145539600401!GO:0008250;oligosaccharyl transferase complex;0.0172355982912774!GO:0044438;microbody part;0.0179889729829499!GO:0044439;peroxisomal part;0.0179889729829499!GO:0008538;proteasome activator activity;0.0180774112495725!GO:0003702;RNA polymerase II transcription factor activity;0.0181858070611042!GO:0007021;tubulin folding;0.0192329910700627!GO:0030521;androgen receptor signaling pathway;0.01937480630043!GO:0003684;damaged DNA binding;0.019389544086189!GO:0045893;positive regulation of transcription, DNA-dependent;0.0193965117463544!GO:0016251;general RNA polymerase II transcription factor activity;0.0195724848336095!GO:0030027;lamellipodium;0.0196976701519773!GO:0005876;spindle microtubule;0.0197661083291022!GO:0007015;actin filament organization;0.0197907774930591!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0205575253817918!GO:0046164;alcohol catabolic process;0.0208922216694415!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0209977649415281!GO:0031902;late endosome membrane;0.0210413093119763!GO:0017166;vinculin binding;0.0211615772761334!GO:0046365;monosaccharide catabolic process;0.0212049663242705!GO:0042393;histone binding;0.0213096314662113!GO:0051540;metal cluster binding;0.0214295183099556!GO:0051536;iron-sulfur cluster binding;0.0214295183099556!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0214965509242309!GO:0001666;response to hypoxia;0.021530880272027!GO:0003988;acetyl-CoA C-acyltransferase activity;0.021530880272027!GO:0030137;COPI-coated vesicle;0.0215872147191761!GO:0048522;positive regulation of cellular process;0.0216021373406998!GO:0015631;tubulin binding;0.0219104495812798!GO:0006631;fatty acid metabolic process;0.0219202710380513!GO:0004300;enoyl-CoA hydratase activity;0.0230016734546616!GO:0050749;apolipoprotein E receptor binding;0.0231347037856398!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0233506990263317!GO:0030125;clathrin vesicle coat;0.0235056574869728!GO:0030665;clathrin coated vesicle membrane;0.0235056574869728!GO:0042770;DNA damage response, signal transduction;0.0239860186155171!GO:0051348;negative regulation of transferase activity;0.0245356427321043!GO:0006506;GPI anchor biosynthetic process;0.0245537815967417!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.024828268802986!GO:0031903;microbody membrane;0.025020118260917!GO:0005778;peroxisomal membrane;0.025020118260917!GO:0031326;regulation of cellular biosynthetic process;0.0250950534293118!GO:0006376;mRNA splice site selection;0.0252587997783419!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0252587997783419!GO:0009112;nucleobase metabolic process;0.0253850120864235!GO:0009303;rRNA transcription;0.0257114548189167!GO:0004518;nuclease activity;0.0260035091074771!GO:0003756;protein disulfide isomerase activity;0.0269495883743601!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0269495883743601!GO:0051101;regulation of DNA binding;0.0270499144593167!GO:0005765;lysosomal membrane;0.0276182920996805!GO:0043624;cellular protein complex disassembly;0.0276730284415366!GO:0043596;nuclear replication fork;0.0280310542271888!GO:0009889;regulation of biosynthetic process;0.0280310542271888!GO:0001726;ruffle;0.0280834667876516!GO:0031123;RNA 3'-end processing;0.0281732422546208!GO:0006081;aldehyde metabolic process;0.0281732422546208!GO:0006733;oxidoreduction coenzyme metabolic process;0.0282613979443204!GO:0009081;branched chain family amino acid metabolic process;0.0284181860085702!GO:0031529;ruffle organization and biogenesis;0.0285331589135672!GO:0016791;phosphoric monoester hydrolase activity;0.0287576574526195!GO:0006275;regulation of DNA replication;0.0291378066249071!GO:0001701;in utero embryonic development;0.0291785265759578!GO:0017040;ceramidase activity;0.0291785265759578!GO:0050811;GABA receptor binding;0.0297682618287136!GO:0005869;dynactin complex;0.0299800600423087!GO:0000062;acyl-CoA binding;0.0300877602803561!GO:0006518;peptide metabolic process;0.0302214095499602!GO:0000209;protein polyubiquitination;0.0302214095499602!GO:0006378;mRNA polyadenylation;0.0302597462481169!GO:0006516;glycoprotein catabolic process;0.0302597462481169!GO:0006144;purine base metabolic process;0.0303647621088323!GO:0031072;heat shock protein binding;0.0305000776543589!GO:0051716;cellular response to stimulus;0.0305262084592092!GO:0006596;polyamine biosynthetic process;0.0305262084592092!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0305382137447416!GO:0055083;monovalent inorganic anion homeostasis;0.0305382137447416!GO:0055064;chloride ion homeostasis;0.0305382137447416!GO:0030644;cellular chloride ion homeostasis;0.0305382137447416!GO:0004680;casein kinase activity;0.0308648548845742!GO:0051128;regulation of cellular component organization and biogenesis;0.0309394388693238!GO:0005784;translocon complex;0.0320644682009303!GO:0006869;lipid transport;0.0320644682009303!GO:0019320;hexose catabolic process;0.0322788300403046!GO:0006541;glutamine metabolic process;0.0322788300403046!GO:0008320;protein transmembrane transporter activity;0.0329295292971658!GO:0006665;sphingolipid metabolic process;0.0331963624288849!GO:0018196;peptidyl-asparagine modification;0.0338536288917446!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0338536288917446!GO:0006505;GPI anchor metabolic process;0.0348432541277114!GO:0043284;biopolymer biosynthetic process;0.0352482560203459!GO:0007006;mitochondrial membrane organization and biogenesis;0.0353975696404581!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0357856520918725!GO:0000228;nuclear chromosome;0.0363400043031609!GO:0008286;insulin receptor signaling pathway;0.036615303778947!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0366643479055495!GO:0043189;H4/H2A histone acetyltransferase complex;0.036852695756345!GO:0044275;cellular carbohydrate catabolic process;0.036979382657789!GO:0006006;glucose metabolic process;0.0370799943143126!GO:0030149;sphingolipid catabolic process;0.0370921767662923!GO:0016405;CoA-ligase activity;0.0375431598506207!GO:0008180;signalosome;0.0376680393664318!GO:0032984;macromolecular complex disassembly;0.0378817138104544!GO:0030384;phosphoinositide metabolic process;0.0388840231318009!GO:0000123;histone acetyltransferase complex;0.0388840231318009!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0388840231318009!GO:0000792;heterochromatin;0.0388840231318009!GO:0003711;transcription elongation regulator activity;0.0397438618113201!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0400006858544945!GO:0051640;organelle localization;0.0401838837465211!GO:0032200;telomere organization and biogenesis;0.0401838837465211!GO:0000723;telomere maintenance;0.0401838837465211!GO:0051059;NF-kappaB binding;0.0410581697125153!GO:0006739;NADP metabolic process;0.0413593647636645!GO:0051098;regulation of binding;0.0418218717439009!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0422250437474004!GO:0008430;selenium binding;0.0424209430316369!GO:0045941;positive regulation of transcription;0.0424272859794439!GO:0043296;apical junction complex;0.0424272859794439!GO:0006658;phosphatidylserine metabolic process;0.0428949571419136!GO:0042158;lipoprotein biosynthetic process;0.0428949571419136!GO:0003923;GPI-anchor transamidase activity;0.0428949571419136!GO:0016255;attachment of GPI anchor to protein;0.0428949571419136!GO:0042765;GPI-anchor transamidase complex;0.0428949571419136!GO:0004532;exoribonuclease activity;0.0430497180784456!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0430497180784456!GO:0006892;post-Golgi vesicle-mediated transport;0.0431037589391384!GO:0004003;ATP-dependent DNA helicase activity;0.0431074369784455!GO:0046966;thyroid hormone receptor binding;0.0431074369784455!GO:0030100;regulation of endocytosis;0.0434395394362283!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.043599994347329!GO:0008097;5S rRNA binding;0.0437844346853685!GO:0006406;mRNA export from nucleus;0.0439165759758253!GO:0031625;ubiquitin protein ligase binding;0.044274702497623!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0450043289934839!GO:0048146;positive regulation of fibroblast proliferation;0.0457025280783748!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.045990823146233!GO:0040029;regulation of gene expression, epigenetic;0.047654175777913!GO:0004448;isocitrate dehydrogenase activity;0.047654175777913!GO:0008144;drug binding;0.0476734824771272!GO:0046912;transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer;0.0476734824771272!GO:0046128;purine ribonucleoside metabolic process;0.0479246328213088!GO:0042278;purine nucleoside metabolic process;0.0479246328213088!GO:0031901;early endosome membrane;0.0481189818263349!GO:0006487;protein amino acid N-linked glycosylation;0.0482865590400685!GO:0035267;NuA4 histone acetyltransferase complex;0.0484133652108687!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0489895198180914!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0490839652068122!GO:0000726;non-recombinational repair;0.049736038481003!GO:0006497;protein amino acid lipidation;0.0497711471679594 | |||
|sample_id=11246 | |||
|sample_note= | |||
|sample_sex=unknown | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=small intestine | |||
|top_motifs=HNF1A:4.88835935984;HNF4A_NR2F1,2:4.82229222128;SNAI1..3:2.49493833079;FOXA2:2.01438286729;ZEB1:1.93758529799;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.81648778893;FOX{F1,F2,J1}:1.77574581186;ESRRA:1.50437014925;NFY{A,B,C}:1.4425449436;MYOD1:1.32429836437;LEF1_TCF7_TCF7L1,2:1.26674692883;bHLH_family:1.21711568017;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.16189307656;ONECUT1,2:1.13270469854;LHX3,4:1.11192178367;NKX3-2:1.09313597131;RBPJ:1.08753157445;T:1.08696681104;ELK1,4_GABP{A,B1}:0.995427630601;PDX1:0.995035757386;HOX{A6,A7,B6,B7}:0.989369161307;SP1:0.968497638825;FOX{D1,D2}:0.959060894232;NKX2-3_NKX2-5:0.938560200754;GATA6:0.91579646744;ADNP_IRX_SIX_ZHX:0.746686131239;NR6A1:0.712936507265;ESR1:0.70039178976;E2F1..5:0.688992762231;TBP:0.662550827987;TEAD1:0.634374599354;PBX1:0.624489488794;LMO2:0.615917218362;SREBF1,2:0.597790283863;NRF1:0.565119829652;STAT1,3:0.563955279919;TBX4,5:0.534411838879;GFI1:0.531605952582;XCPE1{core}:0.468747918968;SOX{8,9,10}:0.45947197621;FOXM1:0.450336093804;EVI1:0.44327066253;HLF:0.425979311145;FOXN1:0.408556355915;RORA:0.38192068004;SOX17:0.330495766258;EN1,2:0.317396060913;ZNF143:0.297724739441;FOXQ1:0.278326566653;ATF6:0.258121124828;MAZ:0.238267062207;VSX1,2:0.221873905656;FOXD3:0.217318252268;YY1:0.199552683861;CEBPA,B_DDIT3:0.187589307946;HOX{A5,B5}:0.159374261374;ALX4:0.159174783369;HAND1,2:0.131312423694;ZNF148:0.128690778816;ATF4:0.117795228692;TOPORS:0.0760219092834;PAX5:0.0711382093775;HOXA9_MEIS1:0.0654949243073;CRX:0.0435057018617;PAX3,7:0.0412808183953;MED-1{core}:0.0148444027062;FOXO1,3,4:0.000322065797099;MYB:-0.00595350793319;PATZ1:-0.0109685397265;IKZF2:-0.0306958133976;SOX5:-0.0332297133846;PITX1..3:-0.0342285600721;TFDP1:-0.0631133240045;ZFP161:-0.0873633719946;STAT5{A,B}:-0.0898417248617;IRF7:-0.0950185154114;AIRE:-0.0952850543045;ALX1:-0.0960136679145;HIC1:-0.0974870138491;ATF2:-0.107322968004;MTF1:-0.110963780513;STAT2,4,6:-0.141582453815;NFIL3:-0.180129384145;FOSL2:-0.184163149265;NR5A1,2:-0.193926218517;TFCP2:-0.19501014714;TEF:-0.195783729026;RXR{A,B,G}:-0.212693998681;IRF1,2:-0.22026220469;SOX2:-0.223328370145;MTE{core}:-0.225528387267;FOS_FOS{B,L1}_JUN{B,D}:-0.243432139519;RXRA_VDR{dimer}:-0.244751535862;NFKB1_REL_RELA:-0.256583797898;IKZF1:-0.263352514604;CUX2:-0.27234022627;POU6F1:-0.273106184269;ELF1,2,4:-0.279384281996;DBP:-0.280589084085;ARID5B:-0.284691867427;PAX2:-0.292041838231;NFE2:-0.296140337224;CDX1,2,4:-0.305485795864;TFAP2{A,C}:-0.31252287933;UFEwm:-0.328430686003;FOXP1:-0.331951371304;EBF1:-0.349266337614;POU2F1..3:-0.373324364634;ATF5_CREB3:-0.374523641091;ZNF384:-0.40442194314;KLF4:-0.411036115653;TP53:-0.413087474747;HOX{A4,D4}:-0.418383310486;NHLH1,2:-0.440607748022;BACH2:-0.444228415276;TFAP2B:-0.456253647726;HSF1,2:-0.464057773747;RFX2..5_RFXANK_RFXAP:-0.471891803734;DMAP1_NCOR{1,2}_SMARC:-0.495511762921;ZBTB6:-0.495549119333;MYBL2:-0.511091649711;BREu{core}:-0.531752048311;GTF2A1,2:-0.547054409687;TAL1_TCF{3,4,12}:-0.563682568823;NFE2L2:-0.564983758624;PRRX1,2:-0.565814479886;RREB1:-0.56634294178;TLX2:-0.569884911644;PAX4:-0.573164806885;JUN:-0.57476157043;NFIX:-0.58880342758;REST:-0.593035565494;OCT4_SOX2{dimer}:-0.603360651925;PAX1,9:-0.6129735823;FOXP3:-0.629843412109;XBP1:-0.671473045924;MYFfamily:-0.680057926392;POU5F1:-0.693201824466;MEF2{A,B,C,D}:-0.697622480319;SPI1:-0.698179655936;SPIB:-0.724554924149;NR3C1:-0.735944093491;FOX{I1,J2}:-0.744405270892;ZBTB16:-0.747670935335;MAFB:-0.778524060925;PPARG:-0.78058614556;GTF2I:-0.783977630456;TLX1..3_NFIC{dimer}:-0.799623249846;POU1F1:-0.817288033352;HES1:-0.823803083537;EP300:-0.83732366666;AHR_ARNT_ARNT2:-0.838703115491;ETS1,2:-0.84070351625;CDC5L:-0.842277179944;NANOG:-0.845916723349;POU3F1..4:-0.863022620981;PRDM1:-0.864686730331;MZF1:-0.870462039767;HMGA1,2:-0.887128989717;RUNX1..3:-0.897941518752;ZIC1..3:-0.910472299098;ZNF238:-0.915564131281;GZF1:-0.915848079457;SPZ1:-0.916393870183;FOXL1:-0.918521104483;GFI1B:-0.923027412555;EGR1..3:-0.92358664601;RFX1:-0.928942161069;PAX8:-0.938757429378;TFAP4:-0.95721880937;SRF:-0.992502592444;AR:-1.02137562701;NR1H4:-1.11545415516;ZNF423:-1.11902211212;NANOG{mouse}:-1.13328289362;CREB1:-1.15554703209;GLI1..3:-1.21531694014;NKX6-1,2:-1.23295375558;TGIF1:-1.23743705408;BPTF:-1.27970145612;PAX6:-1.28890470862;NKX2-1,4:-1.29571152893;GCM1,2:-1.31374556469;HBP1_HMGB_SSRP1_UBTF:-1.33792311686;HIF1A:-1.3497167218;NKX3-1:-1.44722800322;HMX1:-1.55182415421;GATA4:-1.63064798004;NKX2-2,8:-1.64070220919;SMAD1..7,9:-1.67685450194;NFATC1..3:-1.70707269326;NFE2L1:-1.73282466025 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11246-116E4;search_select_hide=table117:FF:11246-116E4 | |||
}} | }} |
Latest revision as of 16:27, 3 June 2020
Name: | Intestinal epithelial cells (polarized), donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10875 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10875
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10875
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.951 |
10 | 10 | 0.661 |
100 | 100 | 0.172 |
101 | 101 | 0.626 |
102 | 102 | 0.2 |
103 | 103 | 0.955 |
104 | 104 | 0.615 |
105 | 105 | 0.473 |
106 | 106 | 0.254 |
107 | 107 | 0.625 |
108 | 108 | 0.827 |
109 | 109 | 0.0629 |
11 | 11 | 0.656 |
110 | 110 | 0.954 |
111 | 111 | 0.65 |
112 | 112 | 0.334 |
113 | 113 | 0.00584 |
114 | 114 | 0.427 |
115 | 115 | 0.679 |
116 | 116 | 0.226 |
117 | 117 | 0.276 |
118 | 118 | 0.207 |
119 | 119 | 0.187 |
12 | 12 | 0.927 |
120 | 120 | 0.187 |
121 | 121 | 0.697 |
122 | 122 | 0.326 |
123 | 123 | 0.0661 |
124 | 124 | 0.9 |
125 | 125 | 0.0167 |
126 | 126 | 0.143 |
127 | 127 | 0.201 |
128 | 128 | 0.0168 |
129 | 129 | 0.485 |
13 | 13 | 0.0015 |
130 | 130 | 0.782 |
131 | 131 | 0.0686 |
132 | 132 | 0.822 |
133 | 133 | 0.238 |
134 | 134 | 0.0468 |
135 | 135 | 0.0538 |
136 | 136 | 0.0115 |
137 | 137 | 0.0122 |
138 | 138 | 0.091 |
139 | 139 | 0.0274 |
14 | 14 | 0.445 |
140 | 140 | 0.809 |
141 | 141 | 0.931 |
142 | 142 | 0.793 |
143 | 143 | 0.00233 |
144 | 144 | 0.337 |
145 | 145 | 0.407 |
146 | 146 | 0.913 |
147 | 147 | 0.762 |
148 | 148 | 0.911 |
149 | 149 | 0.91 |
15 | 15 | 0.647 |
150 | 150 | 0.397 |
151 | 151 | 0.633 |
152 | 152 | 0.261 |
153 | 153 | 0.197 |
154 | 154 | 0.0236 |
155 | 155 | 0.109 |
156 | 156 | 0.224 |
157 | 157 | 0.582 |
158 | 158 | 0.973 |
159 | 159 | 0.623 |
16 | 16 | 0.943 |
160 | 160 | 0.617 |
161 | 161 | 0.513 |
162 | 162 | 0.956 |
163 | 163 | 0.659 |
164 | 164 | 0.897 |
165 | 165 | 0.985 |
166 | 166 | 0.193 |
167 | 167 | 0.896 |
168 | 168 | 0.94 |
169 | 169 | 0.215 |
17 | 17 | 0.33 |
18 | 18 | 0.0294 |
19 | 19 | 0.976 |
2 | 2 | 0.977 |
20 | 20 | 0.512 |
21 | 21 | 0.277 |
22 | 22 | 0.789 |
23 | 23 | 0.342 |
24 | 24 | 0.577 |
25 | 25 | 0.984 |
26 | 26 | 0.436 |
27 | 27 | 0.956 |
28 | 28 | 0.965 |
29 | 29 | 0.233 |
3 | 3 | 0.506 |
30 | 30 | 0.392 |
31 | 31 | 0.988 |
32 | 32 | 0.149 |
33 | 33 | 0.55 |
34 | 34 | 0.638 |
35 | 35 | 0.412 |
36 | 36 | 0.536 |
37 | 37 | 0.88 |
38 | 38 | 0.463 |
39 | 39 | 0.509 |
4 | 4 | 0.561 |
40 | 40 | 0.0139 |
41 | 41 | 0.0166 |
42 | 42 | 0.647 |
43 | 43 | 0.544 |
44 | 44 | 0.181 |
45 | 45 | 0.107 |
46 | 46 | 0.802 |
47 | 47 | 0.568 |
48 | 48 | 0.627 |
49 | 49 | 0.398 |
5 | 5 | 0.408 |
50 | 50 | 0.441 |
51 | 51 | 0.904 |
52 | 52 | 0.991 |
53 | 53 | 0.583 |
54 | 54 | 0.622 |
55 | 55 | 0.509 |
56 | 56 | 0.815 |
57 | 57 | 0.559 |
58 | 58 | 0.745 |
59 | 59 | 0.562 |
6 | 6 | 0.279 |
60 | 60 | 0.683 |
61 | 61 | 0.208 |
62 | 62 | 0.386 |
63 | 63 | 0.839 |
64 | 64 | 0.959 |
65 | 65 | 0.663 |
66 | 66 | 0.0608 |
67 | 67 | 0.104 |
68 | 68 | 0.0548 |
69 | 69 | 0.446 |
7 | 7 | 0.0779 |
70 | 70 | 0.63 |
71 | 71 | 0.845 |
72 | 72 | 0.693 |
73 | 73 | 0.0862 |
74 | 74 | 0.0243 |
75 | 75 | 0.212 |
76 | 76 | 0.948 |
77 | 77 | 0.574 |
78 | 78 | 8.95925e-5 |
79 | 79 | 0.193 |
8 | 8 | 0.596 |
80 | 80 | 0.939 |
81 | 81 | 0.106 |
82 | 82 | 0.0643 |
83 | 83 | 0.717 |
84 | 84 | 0.227 |
85 | 85 | 0.183 |
86 | 86 | 0.527 |
87 | 87 | 0.204 |
88 | 88 | 0.676 |
89 | 89 | 0.476 |
9 | 9 | 0.184 |
90 | 90 | 0.958 |
91 | 91 | 0.0147 |
92 | 92 | 0.304 |
93 | 93 | 0.951 |
94 | 94 | 0.0488 |
95 | 95 | 0.181 |
96 | 96 | 0.25 |
97 | 97 | 0.583 |
98 | 98 | 0.961 |
99 | 99 | 0.216 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10875
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000080 human intestinal epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000080 (human intestinal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)