FF:10843-111E6: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	merkel cell carcinoma cell line:MKL-1
Species:	Human (Homo sapiens)
Library ID:	CNhs12838
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	male
age	26
cell type	merkel cell
cell line	MKL-1
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005532

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12838		CAGE		DRX007933		DRR008805

Accession ID Hg19

Library id		BAM		CTSS
CNhs12838		DRZ000230		DRZ001615

Accession ID Hg38

Library id		BAM		CTSS
CNhs12838		DRZ011580		DRZ012965

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005532

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10092		RNA-Seq		DRX057149		DRR062908

Accession ID Hg19

Library id		BAM		CTSS
RDhi10092		DRZ007984

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.362
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.657
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	1.305
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0.381
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0596
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.406
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.558
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.554
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0332
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.785
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.167
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.458
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0441
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0834
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.625
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.142
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12838

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.11563e-5
MA0003.1	MA0003.1	0.21
MA0004.1	MA0004.1	0.634
MA0006.1	MA0006.1	0.153
MA0007.1	MA0007.1	0.323
MA0009.1	MA0009.1	0.671
MA0014.1	MA0014.1	0.75
MA0017.1	MA0017.1	0.00608
MA0018.2	MA0018.2	0.13
MA0019.1	MA0019.1	0.885
MA0024.1	MA0024.1	4.66447e-13
MA0025.1	MA0025.1	0.93
MA0027.1	MA0027.1	0.828
MA0028.1	MA0028.1	0.392
MA0029.1	MA0029.1	0.788
MA0030.1	MA0030.1	0.826
MA0031.1	MA0031.1	0.231
MA0035.2	MA0035.2	0.47
MA0038.1	MA0038.1	0.151
MA0039.2	MA0039.2	0.0485
MA0040.1	MA0040.1	0.359
MA0041.1	MA0041.1	0.241
MA0042.1	MA0042.1	0.0895
MA0043.1	MA0043.1	0.661
MA0046.1	MA0046.1	0.0444
MA0047.2	MA0047.2	0.0133
MA0048.1	MA0048.1	0.743
MA0050.1	MA0050.1	3.92007e-11
MA0051.1	MA0051.1	1.50413e-6
MA0052.1	MA0052.1	1.32402e-4
MA0055.1	MA0055.1	0.657
MA0057.1	MA0057.1	0.151
MA0058.1	MA0058.1	0.816
MA0059.1	MA0059.1	0.577
MA0060.1	MA0060.1	1.10234e-17
MA0061.1	MA0061.1	0.00211
MA0062.2	MA0062.2	0.622
MA0065.2	MA0065.2	0.245
MA0066.1	MA0066.1	0.309
MA0067.1	MA0067.1	0.866
MA0068.1	MA0068.1	0.206
MA0069.1	MA0069.1	0.544
MA0070.1	MA0070.1	0.0101
MA0071.1	MA0071.1	0.43
MA0072.1	MA0072.1	0.877
MA0073.1	MA0073.1	0.607
MA0074.1	MA0074.1	0.29
MA0076.1	MA0076.1	0.0776
MA0077.1	MA0077.1	0.0102
MA0078.1	MA0078.1	0.705
MA0079.2	MA0079.2	0.694
MA0080.2	MA0080.2	8.26096e-12
MA0081.1	MA0081.1	0.0252
MA0083.1	MA0083.1	1.47144e-7
MA0084.1	MA0084.1	0.771
MA0087.1	MA0087.1	0.684
MA0088.1	MA0088.1	0.484
MA0090.1	MA0090.1	8.91919e-4
MA0091.1	MA0091.1	0.468
MA0092.1	MA0092.1	0.23
MA0093.1	MA0093.1	0.625
MA0099.2	MA0099.2	1.04644e-21
MA0100.1	MA0100.1	0.147
MA0101.1	MA0101.1	0.00115
MA0102.2	MA0102.2	2.82999e-5
MA0103.1	MA0103.1	0.00994
MA0104.2	MA0104.2	0.0635
MA0105.1	MA0105.1	0.0382
MA0106.1	MA0106.1	0.31
MA0107.1	MA0107.1	2.72158e-4
MA0108.2	MA0108.2	1.01355e-5
MA0111.1	MA0111.1	0.881
MA0112.2	MA0112.2	0.00161
MA0113.1	MA0113.1	0.00263
MA0114.1	MA0114.1	0.0731
MA0115.1	MA0115.1	0.106
MA0116.1	MA0116.1	0.157
MA0117.1	MA0117.1	0.558
MA0119.1	MA0119.1	0.503
MA0122.1	MA0122.1	0.369
MA0124.1	MA0124.1	0.536
MA0125.1	MA0125.1	0.232
MA0131.1	MA0131.1	0.566
MA0135.1	MA0135.1	0.972
MA0136.1	MA0136.1	2.98356e-10
MA0137.2	MA0137.2	5.61913e-5
MA0138.2	MA0138.2	0.0985
MA0139.1	MA0139.1	0.402
MA0140.1	MA0140.1	0.336
MA0141.1	MA0141.1	0.203
MA0142.1	MA0142.1	0.111
MA0143.1	MA0143.1	0.932
MA0144.1	MA0144.1	1.62374e-4
MA0145.1	MA0145.1	0.0455
MA0146.1	MA0146.1	0.185
MA0147.1	MA0147.1	0.127
MA0148.1	MA0148.1	0.0237
MA0149.1	MA0149.1	0.175
MA0150.1	MA0150.1	6.96985e-6
MA0152.1	MA0152.1	0.985
MA0153.1	MA0153.1	0.0571
MA0154.1	MA0154.1	0.053
MA0155.1	MA0155.1	0.28
MA0156.1	MA0156.1	2.15869e-6
MA0157.1	MA0157.1	0.297
MA0159.1	MA0159.1	0.117
MA0160.1	MA0160.1	0.18
MA0162.1	MA0162.1	0.217
MA0163.1	MA0163.1	0.206
MA0164.1	MA0164.1	0.482
MA0258.1	MA0258.1	0.109
MA0259.1	MA0259.1	0.155

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12838

Novel motif	Logo	P-value
1	1	0.753
10	10	0.596
100	100	0.704
101	101	0.375
102	102	0.63
103	103	0.75
104	104	0.662
105	105	0.141
106	106	4.82172e-4
107	107	0.0119
108	108	0.979
109	109	0.0962
11	11	0.385
110	110	0.809
111	111	0.59
112	112	0.157
113	113	0.457
114	114	0.0985
115	115	0.118
116	116	0.738
117	117	0.765
118	118	0.455
119	119	0.346
12	12	0.543
120	120	0.798
121	121	0.466
122	122	0.844
123	123	0.156
124	124	0.351
125	125	0.144
126	126	0.288
127	127	0.199
128	128	0.0277
129	129	0.49
13	13	0.577
130	130	0.993
131	131	0.0848
132	132	0.549
133	133	0.06
134	134	0.568
135	135	0.00569
136	136	0.597
137	137	0.439
138	138	0.228
139	139	0.0351
14	14	0.304
140	140	0.923
141	141	0.753
142	142	0.74
143	143	0.147
144	144	0.185
145	145	0.308
146	146	0.748
147	147	0.704
148	148	0.169
149	149	0.0117
15	15	0.372
150	150	0.545
151	151	0.347
152	152	0.0102
153	153	0.104
154	154	0.849
155	155	0.473
156	156	0.702
157	157	0.668
158	158	0.544
159	159	0.328
16	16	0.261
160	160	0.45
161	161	0.978
162	162	0.783
163	163	0.275
164	164	0.239
165	165	0.49
166	166	0.602
167	167	0.326
168	168	0.0729
169	169	0.0248
17	17	0.305
18	18	0.281
19	19	0.0846
2	2	0.14
20	20	0.556
21	21	0.229
22	22	0.0605
23	23	0.00511
24	24	0.371
25	25	0.995
26	26	0.803
27	27	0.332
28	28	0.976
29	29	0.896
3	3	0.066
30	30	0.21
31	31	0.674
32	32	0.012
33	33	0.573
34	34	0.196
35	35	0.878
36	36	0.73
37	37	0.0605
38	38	0.739
39	39	0.257
4	4	0.304
40	40	0.188
41	41	0.213
42	42	0.185
43	43	0.168
44	44	0.83
45	45	0.23
46	46	0.751
47	47	0.904
48	48	0.716
49	49	0.419
5	5	0.087
50	50	0.148
51	51	0.419
52	52	0.162
53	53	0.362
54	54	0.133
55	55	0.108
56	56	0.49
57	57	0.837
58	58	0.345
59	59	0.0865
6	6	0.668
60	60	0.0155
61	61	0.58
62	62	0.205
63	63	0.16
64	64	0.847
65	65	0.207
66	66	0.119
67	67	0.747
68	68	0.886
69	69	0.455
7	7	0.408
70	70	0.26
71	71	0.313
72	72	0.221
73	73	0.0106
74	74	0.686
75	75	0.325
76	76	0.781
77	77	0.0634
78	78	0.943
79	79	0.206
8	8	0.552
80	80	0.0172
81	81	0.447
82	82	0.321
83	83	0.083
84	84	0.664
85	85	0.00732
86	86	0.384
87	87	0.785
88	88	0.839
89	89	0.0956
9	9	0.107
90	90	0.546
91	91	0.299
92	92	0.0987
93	93	0.239
94	94	0.301
95	95	0.223
96	96	0.204
97	97	0.917
98	98	0.905
99	99	0.619

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12838

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000242 Merkel cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000123 (neuron associated cell (sensu Vertebrata))
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000242 (Merkel cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10843-111E6
+|DRA_sample_Accession=CAGE@SAMD00005532
-|name=merkel cell carcinoma cell line:MKL-1
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005532
-|sample_id=10843
+|accession_numbers=CAGE;DRX007933;DRR008805;DRZ000230;DRZ001615;DRZ011580;DRZ012965
-|rna_tube_id=111E6
+|accession_numbers_RNASeq=RNA-Seq;DRX057149;DRR062908;DRZ007984
-|rna_box=111
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
-|rna_position=E6
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002319,CL:0000095,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000123,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0000242
-|sample_cell_lot=
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
-|sample_cell_catalog=9111801
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
-|sample_company=ECACC
+|comment=
-|rna_lot_number=
+|created_by=
-|rna_catalog_number=
+|creation_date=
-|sample_species=Human (Homo sapiens)
+|data_phase=2
-|sample_strain=
+|datafreeze_phase=2
-|sample_dev_stage=
+|def=
-|sample_tissue=skin
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-|sample_donor(cell lot)=
+|ffid_belonging_in_development=CL:0000133,CL:0000357,CL:0000114,CL:0000221
-|sample_sex=male
-|sample_age=26
-|sample_ethnicity=C
-|rna_rin=
-|rna_od260/230=2.15
-|rna_od260/280=2.08
-|sample_cell_type=merkel cell
-|sample_cell_line=MKL-1
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=merkel cell carcinoma
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=31.35898
-|rna_concentration=0.84754
-|sample_note=
-|profile_hcage=CNhs12838,LSID973,release012,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000035,CL:0000036,CL:0000063,CL:0000066,CL:0000076,CL:0000079,CL:0000095,CL:0000114,CL:0000123,CL:0000133,CL:0000144,CL:0000219,CL:0000220,CL:0000221,CL:0000237,CL:0000240,CL:0000242,CL:0000255,CL:0000311,CL:0000312,CL:0000325,CL:0000333,CL:0000357,CL:0000362,CL:0000548,CL:0000723,CL:0002077,CL:0002159,CL:0002319,CL:0002321,CL:0002371
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001003,UBERON:0001062,UBERON:0002050,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004121,UBERON:0005423,UBERON:0007376,UBERON:0007383
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
-|sample_description=
 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120
@@ Line 66: / Line 42: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/merkel%2520cell%2520carcinoma%2520cell%2520line%253aMKL-1.CNhs12838.10843-111E6.hg38.nobarcode.ctss.bed.gz
+|id=FF:10843-111E6
+|is_a=CL:0000242;;EFO:0002091;;FF:0000210;;FF:0100297
+|is_obsolete=
+|library_id=CNhs12838
+|library_id_phase_based=2:CNhs12838
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10843
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10843
+|name=merkel cell carcinoma cell line:MKL-1
+|namespace=FANTOM5
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+|rna_concentration=0.84754
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=2.15
+|rna_od260/280=2.08
+|rna_position=E6
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=1.11E+08
+|rna_weight_ug=31.35898
+|rnaseq_library_id=RDhi10092
+|sample_age=26
+|sample_category=cell lines
+|sample_cell_catalog=9111801
+|sample_cell_line=MKL-1
+|sample_cell_lot=
+|sample_cell_type=merkel cell
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=ECACC
+|sample_description=
+|sample_dev_stage=
+|sample_disease=merkel cell carcinoma
+|sample_donor(cell lot)=
+|sample_ethnicity=C
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.6627950529237e-299!GO:0043226;organelle;7.50820433518173e-272!GO:0043229;intracellular organelle;1.44377794854598e-271!GO:0043231;intracellular membrane-bound organelle;3.10562444027327e-270!GO:0043227;membrane-bound organelle;1.00536811553645e-269!GO:0044422;organelle part;3.74090610699503e-174!GO:0044446;intracellular organelle part;2.12592699895992e-173!GO:0005634;nucleus;3.68269040424078e-159!GO:0005737;cytoplasm;2.61566378924845e-138!GO:0032991;macromolecular complex;1.19684423309721e-116!GO:0044237;cellular metabolic process;3.97040239009454e-115!GO:0044238;primary metabolic process;3.07774868948989e-110!GO:0043170;macromolecule metabolic process;1.01298126441572e-108!GO:0044428;nuclear part;5.99210844770691e-101!GO:0044444;cytoplasmic part;5.39778382368093e-99!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.51309659695973e-96!GO:0030529;ribonucleoprotein complex;5.08318337271358e-88!GO:0043283;biopolymer metabolic process;3.13409951074051e-87!GO:0003723;RNA binding;1.85567194100104e-85!GO:0043233;organelle lumen;2.28385846745238e-82!GO:0031974;membrane-enclosed lumen;2.28385846745238e-82!GO:0010467;gene expression;2.28385846745238e-82!GO:0003676;nucleic acid binding;7.92038941261225e-70!GO:0006396;RNA processing;1.27293637347096e-62!GO:0005739;mitochondrion;2.03737918825495e-62!GO:0043234;protein complex;1.0017730916831e-61!GO:0006259;DNA metabolic process;7.4829482496559e-59!GO:0016043;cellular component organization and biogenesis;3.16353772413037e-57!GO:0031981;nuclear lumen;1.03741845556534e-55!GO:0016070;RNA metabolic process;3.97943255160334e-54!GO:0006996;organelle organization and biogenesis;1.95477480198813e-53!GO:0005515;protein binding;2.86085162954057e-53!GO:0016071;mRNA metabolic process;5.36026827955597e-50!GO:0043228;non-membrane-bound organelle;1.12853961643939e-48!GO:0043232;intracellular non-membrane-bound organelle;1.12853961643939e-48!GO:0008380;RNA splicing;8.08076712834318e-47!GO:0005840;ribosome;9.42042110027606e-47!GO:0044429;mitochondrial part;1.24071508250207e-44!GO:0031967;organelle envelope;1.63948023427523e-44!GO:0031090;organelle membrane;3.95978687321613e-44!GO:0031975;envelope;3.98944981140099e-44!GO:0006397;mRNA processing;4.70190284255722e-44!GO:0006412;translation;5.16956857612306e-40!GO:0003735;structural constituent of ribosome;1.74469543646011e-39!GO:0033036;macromolecule localization;3.15854228031562e-39!GO:0005694;chromosome;8.84991763226875e-38!GO:0015031;protein transport;3.45130680514201e-37!GO:0007049;cell cycle;6.12024913683526e-37!GO:0005654;nucleoplasm;4.59799498860277e-35!GO:0033279;ribosomal subunit;4.85244083743014e-35!GO:0046907;intracellular transport;8.63013956336485e-35!GO:0008104;protein localization;2.00066373904857e-34!GO:0065003;macromolecular complex assembly;3.7881921979445e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.77686576485223e-34!GO:0045184;establishment of protein localization;5.71380690056734e-33!GO:0051276;chromosome organization and biogenesis;1.24832029707805e-32!GO:0005681;spliceosome;1.26450649841919e-32!GO:0044427;chromosomal part;1.75138935272524e-32!GO:0000166;nucleotide binding;2.49685931862957e-31!GO:0022607;cellular component assembly;3.03343030420058e-31!GO:0006974;response to DNA damage stimulus;3.21785629289349e-31!GO:0006281;DNA repair;3.5743844490521e-30!GO:0044249;cellular biosynthetic process;4.88977567532815e-30!GO:0009058;biosynthetic process;9.99782664376097e-30!GO:0009059;macromolecule biosynthetic process;3.26343794023785e-29!GO:0019538;protein metabolic process;1.05407463162224e-28!GO:0000278;mitotic cell cycle;1.76933727072172e-28!GO:0005740;mitochondrial envelope;3.14109168453772e-28!GO:0022402;cell cycle process;7.25729468086114e-28!GO:0051649;establishment of cellular localization;8.93122122887401e-28!GO:0044451;nucleoplasm part;9.14807288605396e-28!GO:0019866;organelle inner membrane;9.66083644279382e-28!GO:0051641;cellular localization;5.30568372897616e-27!GO:0044267;cellular protein metabolic process;8.27133358590919e-27!GO:0031966;mitochondrial membrane;3.12756298607979e-26!GO:0044260;cellular macromolecule metabolic process;3.37884999630936e-26!GO:0016462;pyrophosphatase activity;8.78920920797341e-26!GO:0022403;cell cycle phase;1.272030479535e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.27568589940759e-25!GO:0006325;establishment and/or maintenance of chromatin architecture;1.31205045106082e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;1.49193781891822e-25!GO:0017111;nucleoside-triphosphatase activity;3.35565621341328e-25!GO:0000087;M phase of mitotic cell cycle;5.4604248748023e-25!GO:0005743;mitochondrial inner membrane;8.37917775611851e-25!GO:0005829;cytosol;8.41941766105936e-25!GO:0006323;DNA packaging;1.11184788027998e-24!GO:0006886;intracellular protein transport;1.40945588743126e-24!GO:0007067;mitosis;2.16439418624638e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.54779069944807e-24!GO:0000279;M phase;3.45016085912234e-23!GO:0006119;oxidative phosphorylation;4.04194649547413e-23!GO:0006260;DNA replication;9.5371216976085e-23!GO:0051301;cell division;1.42073628537703e-21!GO:0044445;cytosolic part;2.6588243573675e-21!GO:0044455;mitochondrial membrane part;2.84639033220006e-21!GO:0005730;nucleolus;1.04907546790152e-20!GO:0032553;ribonucleotide binding;1.52682202772725e-20!GO:0032555;purine ribonucleotide binding;1.52682202772725e-20!GO:0005524;ATP binding;1.92091629436137e-20!GO:0016887;ATPase activity;2.48880329712743e-20!GO:0022618;protein-RNA complex assembly;3.54219768637175e-20!GO:0031980;mitochondrial lumen;6.6807570502727e-20!GO:0005759;mitochondrial matrix;6.6807570502727e-20!GO:0032559;adenyl ribonucleotide binding;1.33471896750604e-19!GO:0009719;response to endogenous stimulus;1.33471896750604e-19!GO:0017076;purine nucleotide binding;1.77377176818627e-19!GO:0042623;ATPase activity, coupled;3.99961198836016e-19!GO:0031965;nuclear membrane;5.68765947931255e-19!GO:0006350;transcription;1.04450009491811e-18!GO:0015935;small ribosomal subunit;1.06922867508588e-18!GO:0019222;regulation of metabolic process;1.76296306347856e-18!GO:0006333;chromatin assembly or disassembly;2.20848673361377e-18!GO:0030554;adenyl nucleotide binding;3.26792116798458e-18!GO:0006512;ubiquitin cycle;4.02153350902611e-18!GO:0000785;chromatin;4.08702786444566e-18!GO:0012505;endomembrane system;5.29451169812535e-18!GO:0005635;nuclear envelope;1.48700015637359e-17!GO:0015934;large ribosomal subunit;1.57154542452665e-17!GO:0005746;mitochondrial respiratory chain;1.9966752928938e-17!GO:0015630;microtubule cytoskeleton;2.29888485841914e-17!GO:0003677;DNA binding;7.74678694122515e-17!GO:0044453;nuclear membrane part;8.41893806530037e-17!GO:0016604;nuclear body;8.74122273556883e-17!GO:0016874;ligase activity;1.12035664780627e-16!GO:0008135;translation factor activity, nucleic acid binding;1.60200296541879e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;2.4408913969385e-16!GO:0000375;RNA splicing, via transesterification reactions;2.4408913969385e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.4408913969385e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.00336254873774e-16!GO:0003954;NADH dehydrogenase activity;3.00336254873774e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.00336254873774e-16!GO:0032774;RNA biosynthetic process;3.02440396781353e-16!GO:0008134;transcription factor binding;3.42467150565529e-16!GO:0031323;regulation of cellular metabolic process;5.21645155874204e-16!GO:0006351;transcription, DNA-dependent;5.46829599138809e-16!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.46602421931714e-16!GO:0006457;protein folding;1.155663124617e-15!GO:0044265;cellular macromolecule catabolic process;1.19975216344214e-15!GO:0065004;protein-DNA complex assembly;1.63935326404309e-15!GO:0010468;regulation of gene expression;2.00731610232363e-15!GO:0004386;helicase activity;2.48120143503382e-15!GO:0016568;chromatin modification;3.21935127859761e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.04693784624294e-15!GO:0005643;nuclear pore;9.18822174889406e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.87941250069774e-15!GO:0005761;mitochondrial ribosome;1.47671812787259e-14!GO:0000313;organellar ribosome;1.47671812787259e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.17615794138474e-14!GO:0042254;ribosome biogenesis and assembly;2.38329423841099e-14!GO:0019941;modification-dependent protein catabolic process;2.48319890975869e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.48319890975869e-14!GO:0016607;nuclear speck;3.44387702857333e-14!GO:0050657;nucleic acid transport;3.45652938022263e-14!GO:0051236;establishment of RNA localization;3.45652938022263e-14!GO:0050658;RNA transport;3.45652938022263e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.30406992335865e-14!GO:0045271;respiratory chain complex I;4.30406992335865e-14!GO:0005747;mitochondrial respiratory chain complex I;4.30406992335865e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.3122135044155e-14!GO:0042773;ATP synthesis coupled electron transport;5.3122135044155e-14!GO:0006403;RNA localization;5.86220006723593e-14!GO:0045449;regulation of transcription;5.89195937738363e-14!GO:0051082;unfolded protein binding;6.59293411040232e-14!GO:0044257;cellular protein catabolic process;6.60834363766698e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.48795609843268e-13!GO:0008026;ATP-dependent helicase activity;2.32497304873572e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.70969980977032e-13!GO:0006355;regulation of transcription, DNA-dependent;6.85425487107483e-13!GO:0043285;biopolymer catabolic process;7.48641040618439e-13!GO:0031497;chromatin assembly;1.01668144768129e-12!GO:0000775;chromosome, pericentric region;1.25593771185494e-12!GO:0009057;macromolecule catabolic process;1.54404334318306e-12!GO:0003743;translation initiation factor activity;1.60677440470856e-12!GO:0006334;nucleosome assembly;1.85688869556147e-12!GO:0006413;translational initiation;2.39515176467947e-12!GO:0043566;structure-specific DNA binding;2.86672940382444e-12!GO:0046930;pore complex;3.68226900381549e-12!GO:0051028;mRNA transport;3.95639405030284e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.97951715385137e-12!GO:0000502;proteasome complex (sensu Eukaryota);5.11444507803667e-12!GO:0050794;regulation of cellular process;6.31980072027866e-12!GO:0003697;single-stranded DNA binding;1.31936658843273e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.76884557470636e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.45881272185914e-11!GO:0006261;DNA-dependent DNA replication;4.18829616735276e-11!GO:0006605;protein targeting;4.20012634225833e-11!GO:0005819;spindle;4.43818574854565e-11!GO:0006446;regulation of translational initiation;5.70075939858591e-11!GO:0005794;Golgi apparatus;8.14001775615082e-11!GO:0009259;ribonucleotide metabolic process;1.09914451561722e-10!GO:0006364;rRNA processing;1.622837294779e-10!GO:0065002;intracellular protein transport across a membrane;1.70489314631711e-10!GO:0006163;purine nucleotide metabolic process;1.73885542410333e-10!GO:0051726;regulation of cell cycle;1.93452786193452e-10!GO:0006399;tRNA metabolic process;1.93452786193452e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.01715296467452e-10!GO:0051186;cofactor metabolic process;2.05578911410139e-10!GO:0048770;pigment granule;2.29379579849953e-10!GO:0042470;melanosome;2.29379579849953e-10!GO:0043412;biopolymer modification;2.29379579849953e-10!GO:0030163;protein catabolic process;2.62749945840919e-10!GO:0044248;cellular catabolic process;2.72120786906984e-10!GO:0016072;rRNA metabolic process;3.13584062487221e-10!GO:0030532;small nuclear ribonucleoprotein complex;3.49874547207896e-10!GO:0019829;cation-transporting ATPase activity;3.6989563179693e-10!GO:0016192;vesicle-mediated transport;4.35838543016182e-10!GO:0048193;Golgi vesicle transport;5.01103449780402e-10!GO:0003712;transcription cofactor activity;5.0425722837453e-10!GO:0006913;nucleocytoplasmic transport;6.25353410539229e-10!GO:0000074;regulation of progression through cell cycle;6.4773541930572e-10!GO:0008565;protein transporter activity;6.91446936083205e-10!GO:0006164;purine nucleotide biosynthetic process;1.1957532509953e-09!GO:0008094;DNA-dependent ATPase activity;1.19717456190704e-09!GO:0051169;nuclear transport;1.36314000076904e-09!GO:0009260;ribonucleotide biosynthetic process;1.70107186662066e-09!GO:0009150;purine ribonucleotide metabolic process;1.74454724542545e-09!GO:0005874;microtubule;1.93409917476504e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65515036600252e-09!GO:0007017;microtubule-based process;3.6188008238991e-09!GO:0006366;transcription from RNA polymerase II promoter;4.19596439286504e-09!GO:0006732;coenzyme metabolic process;4.97494761323058e-09!GO:0009055;electron carrier activity;5.4844128545228e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.86672167534558e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.33659324045954e-09!GO:0009141;nucleoside triphosphate metabolic process;8.38647268004898e-09!GO:0016779;nucleotidyltransferase activity;8.99064665638209e-09!GO:0006464;protein modification process;1.01737914572566e-08!GO:0050789;regulation of biological process;1.09411668115666e-08!GO:0044432;endoplasmic reticulum part;1.17280213856314e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.20903167580123e-08!GO:0005657;replication fork;1.79108083322457e-08!GO:0005783;endoplasmic reticulum;1.8666453178314e-08!GO:0015986;ATP synthesis coupled proton transport;1.91102408175433e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.91102408175433e-08!GO:0000245;spliceosome assembly;1.95481642846981e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.99643399981232e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.99643399981232e-08!GO:0005813;centrosome;2.54374671111206e-08!GO:0005815;microtubule organizing center;2.85672574649841e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.97121137553562e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.97121137553562e-08!GO:0009060;aerobic respiration;3.0772815129398e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.09768670549984e-08!GO:0007051;spindle organization and biogenesis;4.38019325219979e-08!GO:0046034;ATP metabolic process;5.77358671555983e-08!GO:0003682;chromatin binding;6.06234234135008e-08!GO:0007059;chromosome segregation;6.82097387397218e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.89907826844626e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.89907826844626e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.39175604430241e-08!GO:0004812;aminoacyl-tRNA ligase activity;8.39175604430241e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.39175604430241e-08!GO:0043687;post-translational protein modification;1.14229733442203e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.26524428408359e-07!GO:0045333;cellular respiration;1.29101958781364e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.56321622416635e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.75476348027318e-07!GO:0006754;ATP biosynthetic process;1.84001292550034e-07!GO:0006753;nucleoside phosphate metabolic process;1.84001292550034e-07!GO:0000226;microtubule cytoskeleton organization and biogenesis;1.84001292550034e-07!GO:0043038;amino acid activation;2.20990493166559e-07!GO:0006418;tRNA aminoacylation for protein translation;2.20990493166559e-07!GO:0043039;tRNA aminoacylation;2.20990493166559e-07!GO:0043623;cellular protein complex assembly;2.49910383659093e-07!GO:0008639;small protein conjugating enzyme activity;3.46958569493187e-07!GO:0003899;DNA-directed RNA polymerase activity;5.45343280883568e-07!GO:0019787;small conjugating protein ligase activity;5.46416297861243e-07!GO:0000075;cell cycle checkpoint;6.3395596763106e-07!GO:0044431;Golgi apparatus part;6.64393240122075e-07!GO:0004842;ubiquitin-protein ligase activity;7.14268660984271e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.48419322762403e-07!GO:0006302;double-strand break repair;7.9768065641641e-07!GO:0051329;interphase of mitotic cell cycle;8.22894971432778e-07!GO:0032446;protein modification by small protein conjugation;8.57837636413835e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.93321936103877e-07!GO:0006084;acetyl-CoA metabolic process;1.03122353938639e-06!GO:0000786;nucleosome;1.09140833949881e-06!GO:0017038;protein import;1.15918172803307e-06!GO:0045259;proton-transporting ATP synthase complex;1.2367651268219e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.2367651268219e-06!GO:0003724;RNA helicase activity;1.24821295020942e-06!GO:0006099;tricarboxylic acid cycle;1.27012049598038e-06!GO:0046356;acetyl-CoA catabolic process;1.27012049598038e-06!GO:0007005;mitochondrion organization and biogenesis;1.34811749723544e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.35476388709462e-06!GO:0000776;kinetochore;1.46490288416973e-06!GO:0051325;interphase;1.64059826064418e-06!GO:0005667;transcription factor complex;2.17182604388483e-06!GO:0005789;endoplasmic reticulum membrane;2.31994253702946e-06!GO:0000228;nuclear chromosome;2.41735534376733e-06!GO:0016363;nuclear matrix;2.44172849975898e-06!GO:0007010;cytoskeleton organization and biogenesis;2.53296609950697e-06!GO:0016567;protein ubiquitination;2.60765500967048e-06!GO:0006461;protein complex assembly;2.70300496226328e-06!GO:0003729;mRNA binding;3.1654397623727e-06!GO:0006752;group transfer coenzyme metabolic process;3.31258990551725e-06!GO:0016881;acid-amino acid ligase activity;3.53241556319236e-06!GO:0000151;ubiquitin ligase complex;3.74459218914773e-06!GO:0051168;nuclear export;4.72788610007711e-06!GO:0048475;coated membrane;5.00925198125045e-06!GO:0030117;membrane coat;5.00925198125045e-06!GO:0003678;DNA helicase activity;5.86325925282936e-06!GO:0051188;cofactor biosynthetic process;6.14829226593764e-06!GO:0003690;double-stranded DNA binding;1.01848179489431e-05!GO:0006310;DNA recombination;1.0232823889048e-05!GO:0008168;methyltransferase activity;1.07828835185627e-05!GO:0005768;endosome;1.07828835185627e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.12545146333262e-05!GO:0009117;nucleotide metabolic process;1.20598124573981e-05!GO:0005762;mitochondrial large ribosomal subunit;1.3005564997126e-05!GO:0000315;organellar large ribosomal subunit;1.3005564997126e-05!GO:0009109;coenzyme catabolic process;1.36422613722078e-05!GO:0016740;transferase activity;1.42625874567619e-05!GO:0015631;tubulin binding;1.67838486094615e-05!GO:0006613;cotranslational protein targeting to membrane;1.75774048727002e-05!GO:0003713;transcription coactivator activity;1.83354984642335e-05!GO:0000792;heterochromatin;1.92057841935678e-05!GO:0045045;secretory pathway;2.08179878758721e-05!GO:0000139;Golgi membrane;2.48169501977687e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.54599612464004e-05!GO:0003684;damaged DNA binding;2.87562425883278e-05!GO:0009108;coenzyme biosynthetic process;3.33183856254958e-05!GO:0008186;RNA-dependent ATPase activity;3.98557271968614e-05!GO:0030120;vesicle coat;4.82626773091502e-05!GO:0030662;coated vesicle membrane;4.82626773091502e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.95152889968296e-05!GO:0008022;protein C-terminus binding;6.00265770472527e-05!GO:0044440;endosomal part;6.07377485165684e-05!GO:0010008;endosome membrane;6.07377485165684e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.49017130386509e-05!GO:0000314;organellar small ribosomal subunit;6.5537246309334e-05!GO:0005763;mitochondrial small ribosomal subunit;6.5537246309334e-05!GO:0006383;transcription from RNA polymerase III promoter;6.88648446009311e-05!GO:0051427;hormone receptor binding;7.78011553156407e-05!GO:0009056;catabolic process;7.99391075664336e-05!GO:0051187;cofactor catabolic process;8.08096929233119e-05!GO:0006338;chromatin remodeling;8.62137757868308e-05!GO:0032508;DNA duplex unwinding;0.000110266826952035!GO:0032392;DNA geometric change;0.000110266826952035!GO:0007088;regulation of mitosis;0.000111744036420812!GO:0000059;protein import into nucleus, docking;0.000121273313880855!GO:0016023;cytoplasmic membrane-bound vesicle;0.000122691657308641!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000127493434649921!GO:0015399;primary active transmembrane transporter activity;0.000127493434649921!GO:0031988;membrane-bound vesicle;0.00012772707555687!GO:0004004;ATP-dependent RNA helicase activity;0.000128719234917842!GO:0006405;RNA export from nucleus;0.000136465716326874!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000154470918102184!GO:0008654;phospholipid biosynthetic process;0.000155355319423547!GO:0006284;base-excision repair;0.000168224081533731!GO:0035257;nuclear hormone receptor binding;0.000172102808692587!GO:0004527;exonuclease activity;0.000173740805278962!GO:0007052;mitotic spindle organization and biogenesis;0.000176046976307485!GO:0031982;vesicle;0.00018858358145596!GO:0044454;nuclear chromosome part;0.000189068852154442!GO:0006839;mitochondrial transport;0.000191967999162626!GO:0009165;nucleotide biosynthetic process;0.000197065487812937!GO:0031410;cytoplasmic vesicle;0.000200336922993335!GO:0005876;spindle microtubule;0.000214963556222898!GO:0006414;translational elongation;0.000218016946634459!GO:0043021;ribonucleoprotein binding;0.000223257851253801!GO:0006270;DNA replication initiation;0.000229713776105844!GO:0005793;ER-Golgi intermediate compartment;0.000229713776105844!GO:0031072;heat shock protein binding;0.000233072337002915!GO:0008270;zinc ion binding;0.000238538655648174!GO:0000819;sister chromatid segregation;0.00024035601303734!GO:0005798;Golgi-associated vesicle;0.000253776149153025!GO:0006268;DNA unwinding during replication;0.000290091023815601!GO:0006352;transcription initiation;0.000292364237918436!GO:0005637;nuclear inner membrane;0.000303171985614768!GO:0008033;tRNA processing;0.000305918418487372!GO:0051170;nuclear import;0.000307073863833904!GO:0007006;mitochondrial membrane organization and biogenesis;0.000311071490724396!GO:0000070;mitotic sister chromatid segregation;0.000319637642242512!GO:0003924;GTPase activity;0.000326410785597774!GO:0065007;biological regulation;0.000337950764466155!GO:0048471;perinuclear region of cytoplasm;0.000353037517601539!GO:0044452;nucleolar part;0.000389447765089307!GO:0004003;ATP-dependent DNA helicase activity;0.000389447765089307!GO:0008017;microtubule binding;0.00039196314737884!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000394467518629828!GO:0043596;nuclear replication fork;0.000397023450955704!GO:0046474;glycerophospholipid biosynthetic process;0.00040136234869454!GO:0003714;transcription corepressor activity;0.0004204965783264!GO:0005684;U2-dependent spliceosome;0.00042267566738616!GO:0006606;protein import into nucleus;0.000422981223383211!GO:0016853;isomerase activity;0.000425611163887566!GO:0000922;spindle pole;0.000429653689288221!GO:0016787;hydrolase activity;0.000442680139487304!GO:0031124;mRNA 3'-end processing;0.000489263818264099!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000573508788545635!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000591067185965325!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000596757060095657!GO:0042393;histone binding;0.000603572157687055!GO:0004674;protein serine/threonine kinase activity;0.0006367271329134!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000707015238550385!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000707015238550385!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000707015238550385!GO:0043681;protein import into mitochondrion;0.000715982667827281!GO:0003711;transcription elongation regulator activity;0.000773064398008093!GO:0005048;signal sequence binding;0.000862475874820362!GO:0043492;ATPase activity, coupled to movement of substances;0.000871895837290097!GO:0015992;proton transport;0.000873598845111804!GO:0006289;nucleotide-excision repair;0.000935188279571044!GO:0030118;clathrin coat;0.000947755331161511!GO:0006818;hydrogen transport;0.000963468577005282!GO:0006793;phosphorus metabolic process;0.000963468577005282!GO:0006796;phosphate metabolic process;0.000963468577005282!GO:0051052;regulation of DNA metabolic process;0.00097782909469451!GO:0008276;protein methyltransferase activity;0.00104680976906416!GO:0016564;transcription repressor activity;0.00105236562855919!GO:0032259;methylation;0.00114939133698753!GO:0007093;mitotic cell cycle checkpoint;0.0011655937631336!GO:0046489;phosphoinositide biosynthetic process;0.00120441469773417!GO:0048500;signal recognition particle;0.00120519686471499!GO:0000287;magnesium ion binding;0.00120519686471499!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00120903520595758!GO:0016859;cis-trans isomerase activity;0.00121459463139831!GO:0000790;nuclear chromatin;0.00122188548296733!GO:0019867;outer membrane;0.0012766219843149!GO:0000725;recombinational repair;0.0013147421886204!GO:0000724;double-strand break repair via homologous recombination;0.0013147421886204!GO:0005905;coated pit;0.00132052046454724!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0013391710240763!GO:0004576;oligosaccharyl transferase activity;0.00134803616803754!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00135964544948117!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00135964544948117!GO:0006626;protein targeting to mitochondrion;0.00137805126265919!GO:0031123;RNA 3'-end processing;0.00138137501884272!GO:0006612;protein targeting to membrane;0.00141996143557406!GO:0005839;proteasome core complex (sensu Eukaryota);0.00143277245016588!GO:0031968;organelle outer membrane;0.00144530784921218!GO:0016126;sterol biosynthetic process;0.00147586201482927!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00148463699475471!GO:0005741;mitochondrial outer membrane;0.00150488382216477!GO:0051920;peroxiredoxin activity;0.00153532056794579!GO:0030880;RNA polymerase complex;0.00153532056794579!GO:0040029;regulation of gene expression, epigenetic;0.0016467867361292!GO:0016310;phosphorylation;0.00184029568568786!GO:0003702;RNA polymerase II transcription factor activity;0.00189581342249232!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00191949210986561!GO:0006378;mRNA polyadenylation;0.00192774030932555!GO:0007018;microtubule-based movement;0.00193148249252552!GO:0008312;7S RNA binding;0.00193606062715282!GO:0005875;microtubule associated complex;0.00193606062715282!GO:0008139;nuclear localization sequence binding;0.00194608588569774!GO:0005788;endoplasmic reticulum lumen;0.0019991620927915!GO:0006402;mRNA catabolic process;0.00200080113250275!GO:0008250;oligosaccharyl transferase complex;0.00211351590293077!GO:0005525;GTP binding;0.00215708134617028!GO:0004518;nuclease activity;0.00220719135312526!GO:0019783;small conjugating protein-specific protease activity;0.00232770000919903!GO:0006401;RNA catabolic process;0.00233254407887126!GO:0006730;one-carbon compound metabolic process;0.00235004693261007!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00241204023652308!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00241204023652308!GO:0005770;late endosome;0.00244069976370667!GO:0051087;chaperone binding;0.00253041145822375!GO:0051287;NAD binding;0.00256026028932761!GO:0016563;transcription activator activity;0.00267609620727967!GO:0000910;cytokinesis;0.00272990333645493!GO:0016251;general RNA polymerase II transcription factor activity;0.0027389698265442!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00274885806424743!GO:0046467;membrane lipid biosynthetic process;0.00277156996390465!GO:0043601;nuclear replisome;0.0030676912685066!GO:0030894;replisome;0.0030676912685066!GO:0035258;steroid hormone receptor binding;0.00308195357793675!GO:0000049;tRNA binding;0.00315366927996528!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00315366927996528!GO:0005769;early endosome;0.00319618989044871!GO:0004843;ubiquitin-specific protease activity;0.00324930446257139!GO:0045786;negative regulation of progression through cell cycle;0.0032954813504106!GO:0045454;cell redox homeostasis;0.00330432692315609!GO:0032940;secretion by cell;0.00330432692315609!GO:0009892;negative regulation of metabolic process;0.00337824544854678!GO:0043414;biopolymer methylation;0.00342759041934872!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0035286033256864!GO:0000428;DNA-directed RNA polymerase complex;0.0035286033256864!GO:0031324;negative regulation of cellular metabolic process;0.00356389108848752!GO:0022890;inorganic cation transmembrane transporter activity;0.00359444217545031!GO:0015980;energy derivation by oxidation of organic compounds;0.00362895841717668!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00368734340368967!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00370169170606346!GO:0045047;protein targeting to ER;0.00370169170606346!GO:0006695;cholesterol biosynthetic process;0.0038694707998954!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00398661245996809!GO:0006611;protein export from nucleus;0.00401150417452066!GO:0032200;telomere organization and biogenesis;0.00408547302406959!GO:0000723;telomere maintenance;0.00408547302406959!GO:0048487;beta-tubulin binding;0.00424871178326444!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00432983062534802!GO:0015002;heme-copper terminal oxidase activity;0.00432983062534802!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00432983062534802!GO:0004129;cytochrome-c oxidase activity;0.00432983062534802!GO:0006144;purine base metabolic process;0.00437696414002779!GO:0046914;transition metal ion binding;0.00445469282979133!GO:0004298;threonine endopeptidase activity;0.00448812963411366!GO:0000118;histone deacetylase complex;0.004558885910731!GO:0030132;clathrin coat of coated pit;0.00457095552855047!GO:0000793;condensed chromosome;0.00457095552855047!GO:0008408;3'-5' exonuclease activity;0.00479231878334864!GO:0004221;ubiquitin thiolesterase activity;0.00483404062733!GO:0005663;DNA replication factor C complex;0.00496390476683793!GO:0006891;intra-Golgi vesicle-mediated transport;0.00504641162214288!GO:0003746;translation elongation factor activity;0.00513512808156085!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00514168990569664!GO:0006595;polyamine metabolic process;0.00521802111070031!GO:0044450;microtubule organizing center part;0.00527893342983099!GO:0005885;Arp2/3 protein complex;0.00552418924262009!GO:0030521;androgen receptor signaling pathway;0.00563066285396826!GO:0051539;4 iron, 4 sulfur cluster binding;0.00569275579630525!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00569275579630525!GO:0000178;exosome (RNase complex);0.00581503715045139!GO:0019899;enzyme binding;0.00589828905372914!GO:0030867;rough endoplasmic reticulum membrane;0.00596873948729591!GO:0016790;thiolester hydrolase activity;0.00616127484177696!GO:0009112;nucleobase metabolic process;0.00624284379937467!GO:0006406;mRNA export from nucleus;0.00641504486095739!GO:0006650;glycerophospholipid metabolic process;0.00676457037701205!GO:0008180;signalosome;0.00679162666308507!GO:0005669;transcription factor TFIID complex;0.0069050864074038!GO:0031570;DNA integrity checkpoint;0.0069050864074038!GO:0005521;lamin binding;0.00700895274502687!GO:0000082;G1/S transition of mitotic cell cycle;0.00701800171073258!GO:0005720;nuclear heterochromatin;0.00719318220970097!GO:0051128;regulation of cellular component organization and biogenesis;0.00720763540541492!GO:0006376;mRNA splice site selection;0.00727016065768064!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00727016065768064!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00733921038472307!GO:0043130;ubiquitin binding;0.00755972273609647!GO:0032182;small conjugating protein binding;0.00755972273609647!GO:0009116;nucleoside metabolic process;0.00794347585378688!GO:0030137;COPI-coated vesicle;0.00800514162983448!GO:0051246;regulation of protein metabolic process;0.00809331900375579!GO:0006497;protein amino acid lipidation;0.00845531858688168!GO:0043631;RNA polyadenylation;0.00918111044948663!GO:0006091;generation of precursor metabolites and energy;0.00928735036060232!GO:0016584;nucleosome positioning;0.00932098871972173!GO:0016272;prefoldin complex;0.00934523309070746!GO:0008287;protein serine/threonine phosphatase complex;0.00950446943620956!GO:0000209;protein polyubiquitination;0.00971708915327301!GO:0006505;GPI anchor metabolic process;0.0101557833770319!GO:0005832;chaperonin-containing T-complex;0.0101557833770319!GO:0030384;phosphoinositide metabolic process;0.0104657063229503!GO:0000726;non-recombinational repair;0.0108402158179598!GO:0018196;peptidyl-asparagine modification;0.0108449880235753!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0108449880235753!GO:0005758;mitochondrial intermembrane space;0.0115119860239973!GO:0000781;chromosome, telomeric region;0.0116762433130743!GO:0044430;cytoskeletal part;0.0117001021916952!GO:0005869;dynactin complex;0.0118786439138447!GO:0032561;guanyl ribonucleotide binding;0.0118786439138447!GO:0019001;guanyl nucleotide binding;0.0118786439138447!GO:0006506;GPI anchor biosynthetic process;0.0121194527277174!GO:0042054;histone methyltransferase activity;0.0121444862601796!GO:0031970;organelle envelope lumen;0.0123051399376841!GO:0000152;nuclear ubiquitin ligase complex;0.0128445322805426!GO:0031577;spindle checkpoint;0.0128448729008699!GO:0005652;nuclear lamina;0.0129292619204146!GO:0003730;mRNA 3'-UTR binding;0.0130037806274548!GO:0004532;exoribonuclease activity;0.0130037806274548!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0130037806274548!GO:0030663;COPI coated vesicle membrane;0.0131427345673634!GO:0030126;COPI vesicle coat;0.0131427345673634!GO:0016569;covalent chromatin modification;0.0132596762604619!GO:0016481;negative regulation of transcription;0.0138541205906807!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0140621253634387!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0142883396418911!GO:0000339;RNA cap binding;0.0143564517509807!GO:0051540;metal cluster binding;0.0145030306344569!GO:0051536;iron-sulfur cluster binding;0.0145030306344569!GO:0003887;DNA-directed DNA polymerase activity;0.0148585955184381!GO:0007004;telomere maintenance via telomerase;0.0152789191469823!GO:0030133;transport vesicle;0.0156032756815208!GO:0035267;NuA4 histone acetyltransferase complex;0.0163992797132959!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0165828747921957!GO:0055083;monovalent inorganic anion homeostasis;0.0165828747921957!GO:0055064;chloride ion homeostasis;0.0165828747921957!GO:0030644;cellular chloride ion homeostasis;0.0165828747921957!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0172294085880062!GO:0030119;AP-type membrane coat adaptor complex;0.0172540742412833!GO:0051252;regulation of RNA metabolic process;0.0174547311430863!GO:0030658;transport vesicle membrane;0.0176772957032785!GO:0006607;NLS-bearing substrate import into nucleus;0.0176772957032785!GO:0004523;ribonuclease H activity;0.0176825164454925!GO:0006892;post-Golgi vesicle-mediated transport;0.0177593753166238!GO:0033170;DNA-protein loading ATPase activity;0.0182467589113249!GO:0003689;DNA clamp loader activity;0.0182467589113249!GO:0031901;early endosome membrane;0.0182467589113249!GO:0016279;protein-lysine N-methyltransferase activity;0.0187491223216915!GO:0018024;histone-lysine N-methyltransferase activity;0.0187491223216915!GO:0016278;lysine N-methyltransferase activity;0.0187491223216915!GO:0006220;pyrimidine nucleotide metabolic process;0.0194784996272022!GO:0042770;DNA damage response, signal transduction;0.019746781441487!GO:0030705;cytoskeleton-dependent intracellular transport;0.0208595963763569!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0214649992996918!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0215393188305777!GO:0043284;biopolymer biosynthetic process;0.0219297237946798!GO:0051789;response to protein stimulus;0.0222782931900232!GO:0006986;response to unfolded protein;0.0222782931900232!GO:0019843;rRNA binding;0.0228344910988518!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228786137275371!GO:0030518;steroid hormone receptor signaling pathway;0.0232655754716742!GO:0051297;centrosome organization and biogenesis;0.0232655754716742!GO:0031023;microtubule organizing center organization and biogenesis;0.0232655754716742!GO:0008213;protein amino acid alkylation;0.0232655754716742!GO:0006479;protein amino acid methylation;0.0232655754716742!GO:0030496;midbody;0.0233356831879355!GO:0030131;clathrin adaptor complex;0.0234472166068985!GO:0006301;postreplication repair;0.0234730852689583!GO:0008610;lipid biosynthetic process;0.023559760875276!GO:0005938;cell cortex;0.0235678151222375!GO:0046128;purine ribonucleoside metabolic process;0.0236244183106202!GO:0042278;purine nucleoside metabolic process;0.0236244183106202!GO:0008536;Ran GTPase binding;0.0236244183106202!GO:0016585;chromatin remodeling complex;0.0236754697364326!GO:0031371;ubiquitin conjugating enzyme complex;0.0238238775118538!GO:0043022;ribosome binding;0.0238466133229727!GO:0042158;lipoprotein biosynthetic process;0.024160498081303!GO:0030125;clathrin vesicle coat;0.0241799442045463!GO:0030665;clathrin coated vesicle membrane;0.0241799442045463!GO:0031252;leading edge;0.0247963865003246!GO:0000930;gamma-tubulin complex;0.0248489884997562!GO:0030027;lamellipodium;0.0255992637909766!GO:0007098;centrosome cycle;0.0262828943323008!GO:0000077;DNA damage checkpoint;0.0267358697320051!GO:0000123;histone acetyltransferase complex;0.0269208902463259!GO:0030176;integral to endoplasmic reticulum membrane;0.027623932457824!GO:0032981;mitochondrial respiratory chain complex I assembly;0.027705933304789!GO:0010257;NADH dehydrogenase complex assembly;0.027705933304789!GO:0033108;mitochondrial respiratory chain complex assembly;0.027705933304789!GO:0000805;X chromosome;0.0281587786867049!GO:0001740;Barr body;0.0281587786867049!GO:0043189;H4/H2A histone acetyltransferase complex;0.0281901327127656!GO:0006007;glucose catabolic process;0.0282686810776529!GO:0043624;cellular protein complex disassembly;0.0287636295360415!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0293178359753591!GO:0007021;tubulin folding;0.0294317727456182!GO:0030660;Golgi-associated vesicle membrane;0.0294317727456182!GO:0016835;carbon-oxygen lyase activity;0.0294444235713568!GO:0006541;glutamine metabolic process;0.0297856805806512!GO:0008143;poly(A) binding;0.0299389275454014!GO:0019206;nucleoside kinase activity;0.0301168471155548!GO:0046966;thyroid hormone receptor binding;0.0303868920737712!GO:0051320;S phase;0.0306979118311706!GO:0016197;endosome transport;0.0310384664239096!GO:0005487;nucleocytoplasmic transporter activity;0.0310653916688135!GO:0005658;alpha DNA polymerase:primase complex;0.0313806088156026!GO:0000084;S phase of mitotic cell cycle;0.0319750794335111!GO:0050178;phenylpyruvate tautomerase activity;0.0320812822170288!GO:0042802;identical protein binding;0.0324723538574974!GO:0042769;DNA damage response, detection of DNA damage;0.032847972574729!GO:0051656;establishment of organelle localization;0.032847972574729!GO:0031902;late endosome membrane;0.0330507275479861!GO:0005784;translocon complex;0.0338384046690657!GO:0009124;nucleoside monophosphate biosynthetic process;0.034552332788305!GO:0009123;nucleoside monophosphate metabolic process;0.034552332788305!GO:0008097;5S rRNA binding;0.0345860240371819!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0353584518961154!GO:0042026;protein refolding;0.0354355764910532!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0362518961144076!GO:0005680;anaphase-promoting complex;0.0363532066373744!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0365338900335727!GO:0047485;protein N-terminus binding;0.0368641262701184!GO:0009303;rRNA transcription;0.0369413504875716!GO:0000086;G2/M transition of mitotic cell cycle;0.0381404652379227!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0382394476920884!GO:0006275;regulation of DNA replication;0.0388517051664265!GO:0007019;microtubule depolymerization;0.0395377813796212!GO:0003725;double-stranded RNA binding;0.0397352840154307!GO:0033116;ER-Golgi intermediate compartment membrane;0.0422145254658436!GO:0000803;sex chromosome;0.0422145254658436!GO:0001739;sex chromatin;0.0422145254658436!GO:0030911;TPR domain binding;0.0424454775635073!GO:0001832;blastocyst growth;0.0432401040113543!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0432401040113543!GO:0031625;ubiquitin protein ligase binding;0.043774427577422!GO:0016570;histone modification;0.0442625622432028!GO:0012501;programmed cell death;0.0455952629235973!GO:0030135;coated vesicle;0.0457478882900013!GO:0022406;membrane docking;0.0459691802589453!GO:0048278;vesicle docking;0.0459691802589453!GO:0005881;cytoplasmic microtubule;0.0468136687922108!GO:0046112;nucleobase biosynthetic process;0.0472362088147875!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0479024951057463!GO:0032984;macromolecular complex disassembly;0.0493473552893445
+|sample_id=10843
+|sample_note=
+|sample_sex=male
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=skin
+|top_motifs=POU6F1:3.69163208245;NANOG:3.43252468768;NKX2-3_NKX2-5:2.56793325908;BREu{core}:2.51708414314;E2F1..5:2.48277855737;ADNP_IRX_SIX_ZHX:2.41260920252;TFDP1:2.34113332559;POU1F1:2.33195720848;NFY{A,B,C}:2.25534329513;MYOD1:2.18330820554;LMO2:1.9945859458;NRF1:1.86164993992;FOXQ1:1.85369465812;POU3F1..4:1.832739856;STAT5{A,B}:1.80761012545;SOX{8,9,10}:1.76063104519;TEF:1.61473154478;FOXM1:1.49827732829;YY1:1.46985458834;PDX1:1.46263073569;AHR_ARNT_ARNT2:1.40189109822;ZNF143:1.39159341737;NKX6-1,2:1.33208690801;LHX3,4:1.32269402212;SNAI1..3:1.29741531829;PAX6:1.26872936126;GFI1:1.24716829116;ONECUT1,2:1.22256150421;RBPJ:1.19974040649;PITX1..3:1.16455861361;HOX{A4,D4}:1.14752157016;ZEB1:1.14185262997;DBP:1.12609536937;POU2F1..3:1.10951660327;EVI1:1.10206540895;HOXA9_MEIS1:1.03485472124;PAX5:1.00868094893;AIRE:0.904485228115;SOX17:0.896141473842;ELK1,4_GABP{A,B1}:0.886849016268;MYB:0.87820085342;PBX1:0.860623097114;FOXD3:0.857678563861;PAX3,7:0.85640443753;PAX1,9:0.849087117455;PRRX1,2:0.8405608227;SOX5:0.826235623061;ESRRA:0.805288339724;ZFP161:0.778514661543;RFX2..5_RFXANK_RFXAP:0.727611701886;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724771787614;FOXP1:0.720739933648;NR1H4:0.697678027345;NKX2-1,4:0.686895496604;STAT1,3:0.683906085104;ZIC1..3:0.65582987438;GFI1B:0.628234127961;CRX:0.621282947209;ZBTB16:0.589007631719;NR6A1:0.582087980533;MZF1:0.575862867338;PAX8:0.570939187466;TOPORS:0.547076360111;KLF4:0.530300631258;ZBTB6:0.528474576196;UFEwm:0.502596278628;ATF4:0.497286722444;CUX2:0.492544374796;TFAP2B:0.487499081143;FOXL1:0.474867689874;FOXA2:0.442888838341;T:0.424143001329;REST:0.412788223935;MED-1{core}:0.401912383665;POU5F1:0.391523424914;CDX1,2,4:0.380259874809;TGIF1:0.374704223085;RFX1:0.369237694384;ZNF423:0.359977715214;NKX3-1:0.35644105735;EGR1..3:0.344410105222;OCT4_SOX2{dimer}:0.332117342407;FOXN1:0.311673411438;IKZF2:0.304328769033;PATZ1:0.293290140159;AR:0.292555174406;BPTF:0.275271779862;HAND1,2:0.253119459542;TAL1_TCF{3,4,12}:0.248631548401;ZNF384:0.222083307506;PPARG:0.216384216243;PAX4:0.2087246761;FOX{F1,F2,J1}:0.207230844927;XCPE1{core}:0.187045218876;NR5A1,2:0.179260580794;RORA:0.160572289611;ATF5_CREB3:0.15825752657;NFE2L1:0.155532288417;bHLH_family:0.143560910587;RREB1:0.107448525189;HOX{A6,A7,B6,B7}:0.0997231882611;HES1:0.0827148223911;LEF1_TCF7_TCF7L1,2:0.0674961808387;NFIL3:0.0511862460966;GATA4:0.0425684405336;HIC1:-0.0220507915377;MTE{core}:-0.0294472423155;PRDM1:-0.0599985825726;MTF1:-0.063742058695;MYFfamily:-0.0955454881431;GCM1,2:-0.102015817227;SPZ1:-0.130499175357;FOXP3:-0.177410777725;GATA6:-0.190792206923;HNF1A:-0.206630220707;ARID5B:-0.212061601227;ALX4:-0.214255946104;HMGA1,2:-0.224641099568;HOX{A5,B5}:-0.226648033933;NKX2-2,8:-0.230024045396;HSF1,2:-0.267392211736;SOX2:-0.27650844262;GTF2I:-0.339677116029;CDC5L:-0.380377885599;CREB1:-0.391408417591;NKX3-2:-0.423242627251;RUNX1..3:-0.46519502175;MEF2{A,B,C,D}:-0.471929973614;TP53:-0.485997754669;JUN:-0.504525924393;FOX{D1,D2}:-0.513853996386;RXR{A,B,G}:-0.523039468748;EN1,2:-0.54971838345;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.567401393503;SREBF1,2:-0.578381501717;HBP1_HMGB_SSRP1_UBTF:-0.589537066152;IKZF1:-0.620014490725;TBX4,5:-0.642945271182;TLX1..3_NFIC{dimer}:-0.649618931578;NFKB1_REL_RELA:-0.65557412781;SPI1:-0.661573826186;DMAP1_NCOR{1,2}_SMARC:-0.665613384798;FOSL2:-0.684667386975;BACH2:-0.719039352449;FOXO1,3,4:-0.738644518715;HNF4A_NR2F1,2:-0.738736369075;GTF2A1,2:-0.785479377996;SPIB:-0.787250681552;NHLH1,2:-0.8117037259;FOS_FOS{B,L1}_JUN{B,D}:-0.821391306078;NFE2:-0.846338861174;NFIX:-0.854119073543;EBF1:-0.90011783618;PAX2:-0.908875226257;VSX1,2:-0.937344140507;ATF2:-0.992242157196;NR3C1:-1.0238857301;GZF1:-1.02565281064;HLF:-1.0349672853;NFE2L2:-1.09392289637;TFAP4:-1.11364665967;ZNF238:-1.11556378552;TEAD1:-1.11600768648;MAZ:-1.1322347807;ELF1,2,4:-1.14655176582;SMAD1..7,9:-1.2120866795;ALX1:-1.21504339429;HIF1A:-1.23549079891;IRF7:-1.24288663631;FOX{I1,J2}:-1.24699367968;NANOG{mouse}:-1.26258521464;XBP1:-1.27223780793;ATF6:-1.31963784074;ETS1,2:-1.32012766887;ZNF148:-1.33538566283;ESR1:-1.34430594231;MYBL2:-1.35124791054;TBP:-1.37233202548;CEBPA,B_DDIT3:-1.3906986315;SP1:-1.4330699201;RXRA_VDR{dimer}:-1.43518741179;GLI1..3:-1.44918176028;IRF1,2:-1.47515891704;HMX1:-1.50719840339;NFATC1..3:-1.52037058798;TLX2:-1.54670504109;EP300:-1.58718072272;MAFB:-1.61332223309;TFCP2:-1.83709849028;TFAP2{A,C}:-1.90693881227;STAT2,4,6:-2.02758553786;SRF:-2.20502855927
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10843-111E6;search_select_hide=table117:FF:10843-111E6
 }}

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FF:10843-111E6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0