FF:10692-109F8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005840 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007913;DRR008785;DRZ000210;DRZ001595;DRZ011560;DRZ012945 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:3905,DOID:3908,DOID:1749,DOID:4556 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0100353,FF:0101120,FF:0100762,FF:0102205,FF:0102202 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520non-keratinizing%2520squamous%2520carcinoma%2520cell%2520line%253aSKG-II-SF.CNhs11825.10692-109F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10692-109F8 | |id=FF:10692-109F8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102202;;FF:0102205 | ||
|is_obsolete= | |||
|library_id=CNhs11825 | |||
|library_id_phase_based=2:CNhs11825 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10692 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10692 | |||
|name=large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF | |name=large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11825,LSID829,release010,COMPLETED | |profile_hcage=CNhs11825,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.038122678605483,0,0,0,0,-0.0192351648111186,0.247398928392599,-0.0233291834523446,0.00599929434870851,0,0,0,0,0,0,0,0,0.141082865275267,0,0,0.141082865275267,0,0.0441630905414996,0,0,0,0,0,0.04312496900721,0,0,0.114442338613737,0,0,0,0,0,0,0,0,0,0,0.247398928392599,0,0.0225351599864314,0,0,0,0.197486100889927,0,0,0,0,0.0463264115247992,0,0,0,0,0,0.0272203442905388,0.141082865275267,-0.0207470040316391,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.076245357210966,0,0,0,0,0,0,0,0,0,0.0283671238322135,0,0,0,0,0.29590612460958,0.060519822889925,0,0,0,0.076245357210966,0.0430475140375611,0.0308072822817019,0,0,0,0.141082865275267,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.058250915316978,0.076245357210966,0,0,0,-0.187204746652012,0,0,0.0285056957634206,0,0,0 | |||
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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=43.79272 | |rna_weight_ug=43.79272 | ||
|sample_age=50 | |sample_age=50 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0685 | |sample_cell_catalog=RCB0685 | ||
|sample_cell_line=SKG-II-SF | |sample_cell_line=SKG-II-SF | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.0321567436167e-264!GO:0043226;organelle;1.92855967363321e-211!GO:0043229;intracellular organelle;1.09922210651285e-210!GO:0043227;membrane-bound organelle;2.44293935316285e-199!GO:0043231;intracellular membrane-bound organelle;2.44293935316285e-199!GO:0005737;cytoplasm;1.19106943765422e-180!GO:0044422;organelle part;6.46907381096661e-143!GO:0044446;intracellular organelle part;2.26455184545147e-141!GO:0044444;cytoplasmic part;1.48434793489934e-109!GO:0005634;nucleus;1.96027752407504e-98!GO:0032991;macromolecular complex;4.87817285099089e-98!GO:0044238;primary metabolic process;2.81847897928305e-92!GO:0044237;cellular metabolic process;6.132928755584e-92!GO:0043170;macromolecule metabolic process;3.04869412106517e-91!GO:0005515;protein binding;4.58731748287276e-84!GO:0030529;ribonucleoprotein complex;6.598710472623e-80!GO:0044428;nuclear part;1.2975270217112e-76!GO:0003723;RNA binding;2.43226021841566e-69!GO:0043233;organelle lumen;2.57599899243914e-66!GO:0031974;membrane-enclosed lumen;2.57599899243914e-66!GO:0043283;biopolymer metabolic process;4.67985507837276e-57!GO:0016043;cellular component organization and biogenesis;2.45141634128125e-53!GO:0005739;mitochondrion;1.59680325197869e-52!GO:0043228;non-membrane-bound organelle;1.14470962068436e-51!GO:0043232;intracellular non-membrane-bound organelle;1.14470962068436e-51!GO:0043234;protein complex;2.12617680627702e-50!GO:0019538;protein metabolic process;1.02525369692973e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.95296175966241e-49!GO:0006412;translation;8.46068360958149e-49!GO:0005840;ribosome;4.41392451091486e-48!GO:0006396;RNA processing;2.17324042673459e-47!GO:0010467;gene expression;1.08453178215321e-46!GO:0044267;cellular protein metabolic process;1.16027168730026e-44!GO:0031981;nuclear lumen;2.32179260930773e-44!GO:0044260;cellular macromolecule metabolic process;2.50811903078748e-44!GO:0003735;structural constituent of ribosome;1.09507570030934e-42!GO:0006259;DNA metabolic process;7.67393213659336e-41!GO:0031090;organelle membrane;1.62299472772556e-40!GO:0006996;organelle organization and biogenesis;4.62674493156661e-40!GO:0015031;protein transport;3.48606488555321e-39!GO:0033036;macromolecule localization;5.11602647007381e-39!GO:0016071;mRNA metabolic process;1.45321303452271e-38!GO:0007049;cell cycle;2.05966868337429e-38!GO:0033279;ribosomal subunit;4.19818580055404e-37!GO:0046907;intracellular transport;1.68535321206183e-35!GO:0005829;cytosol;2.46093270825637e-35!GO:0008104;protein localization;3.49732690478159e-35!GO:0008380;RNA splicing;5.12669720680005e-35!GO:0009059;macromolecule biosynthetic process;1.80935319599209e-34!GO:0045184;establishment of protein localization;2.10589698368534e-34!GO:0031967;organelle envelope;2.21997651854782e-34!GO:0044249;cellular biosynthetic process;2.51763180920002e-34!GO:0031975;envelope;2.88912098046354e-34!GO:0006397;mRNA processing;5.8665705692188e-34!GO:0009058;biosynthetic process;2.77876882534381e-33!GO:0044429;mitochondrial part;3.3181396790217e-32!GO:0003676;nucleic acid binding;1.2716765068343e-30!GO:0065003;macromolecular complex assembly;5.13053748798464e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.30478452683894e-28!GO:0000166;nucleotide binding;3.9919014793766e-28!GO:0022402;cell cycle process;6.70236566746662e-28!GO:0022607;cellular component assembly;1.7895813298116e-27!GO:0006974;response to DNA damage stimulus;1.90273378232375e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.52244342783425e-27!GO:0005654;nucleoplasm;7.1695784341786e-27!GO:0006886;intracellular protein transport;1.70168481374193e-26!GO:0005681;spliceosome;2.84614383879874e-25!GO:0016070;RNA metabolic process;3.20428408449297e-23!GO:0005694;chromosome;4.48285732007569e-23!GO:0051641;cellular localization;4.89284726951479e-23!GO:0051649;establishment of cellular localization;5.91031971967332e-23!GO:0006281;DNA repair;9.67526773340254e-23!GO:0000278;mitotic cell cycle;1.3589475774117e-21!GO:0044451;nucleoplasm part;1.51814016612498e-21!GO:0016462;pyrophosphatase activity;1.61294709734988e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.71447857727327e-21!GO:0017111;nucleoside-triphosphatase activity;1.83854851115542e-21!GO:0044445;cytosolic part;2.11697615284836e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.81147466612605e-21!GO:0005730;nucleolus;7.63898057706634e-21!GO:0019866;organelle inner membrane;9.76835178831656e-21!GO:0032553;ribonucleotide binding;1.35664134754501e-20!GO:0032555;purine ribonucleotide binding;1.35664134754501e-20!GO:0005740;mitochondrial envelope;1.50134372388778e-20!GO:0044427;chromosomal part;2.33627356194668e-20!GO:0009719;response to endogenous stimulus;2.4929659655275e-20!GO:0008134;transcription factor binding;2.72754470200477e-20!GO:0015934;large ribosomal subunit;4.75059697714781e-20!GO:0017076;purine nucleotide binding;1.43409041761406e-19!GO:0031966;mitochondrial membrane;2.6648525307759e-19!GO:0012505;endomembrane system;4.48100760673642e-19!GO:0006260;DNA replication;8.31158027012934e-19!GO:0005743;mitochondrial inner membrane;1.76739346212902e-18!GO:0006457;protein folding;2.83502444419035e-18!GO:0015935;small ribosomal subunit;3.20229085762473e-18!GO:0022403;cell cycle phase;6.25204888009563e-18!GO:0006119;oxidative phosphorylation;7.82267973226844e-18!GO:0005524;ATP binding;1.70345148476898e-17!GO:0032559;adenyl ribonucleotide binding;5.04018960804483e-17!GO:0022618;protein-RNA complex assembly;5.35189434827681e-17!GO:0016874;ligase activity;6.10047544977041e-17!GO:0044455;mitochondrial membrane part;6.84673902926253e-17!GO:0051726;regulation of cell cycle;2.11899733489308e-16!GO:0000074;regulation of progression through cell cycle;2.77404709130663e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;4.93865910253309e-16!GO:0051276;chromosome organization and biogenesis;7.20907325889877e-16!GO:0006512;ubiquitin cycle;7.52626340754591e-16!GO:0030554;adenyl nucleotide binding;7.52626340754591e-16!GO:0019941;modification-dependent protein catabolic process;8.69296937330754e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.69296937330754e-16!GO:0044257;cellular protein catabolic process;1.33646407259556e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.00344938290416e-15!GO:0006366;transcription from RNA polymerase II promoter;2.03484954477368e-15!GO:0005783;endoplasmic reticulum;3.18674332987097e-15!GO:0051301;cell division;3.23484256540044e-15!GO:0043412;biopolymer modification;3.29044760516795e-15!GO:0000087;M phase of mitotic cell cycle;3.5617435197248e-15!GO:0048770;pigment granule;4.22335846432564e-15!GO:0042470;melanosome;4.22335846432564e-15!GO:0007067;mitosis;6.05995635332231e-15!GO:0005635;nuclear envelope;1.09691589302478e-14!GO:0008135;translation factor activity, nucleic acid binding;1.23806415484207e-14!GO:0043285;biopolymer catabolic process;1.31792234918043e-14!GO:0012501;programmed cell death;2.14329102887092e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.56907830749592e-14!GO:0044265;cellular macromolecule catabolic process;2.9116023533538e-14!GO:0006605;protein targeting;2.95383571556915e-14!GO:0031980;mitochondrial lumen;3.16137564469182e-14!GO:0005759;mitochondrial matrix;3.16137564469182e-14!GO:0051082;unfolded protein binding;3.43426523194922e-14!GO:0005794;Golgi apparatus;4.43555685010054e-14!GO:0006915;apoptosis;5.2192325905e-14!GO:0000279;M phase;5.8646685106784e-14!GO:0050794;regulation of cellular process;7.16602522785244e-14!GO:0005746;mitochondrial respiratory chain;1.1942188480841e-13!GO:0006464;protein modification process;2.51142784462155e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.89872755874637e-13!GO:0044432;endoplasmic reticulum part;2.93448301816516e-13!GO:0031965;nuclear membrane;3.35248409646139e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.45386607932768e-13!GO:0005761;mitochondrial ribosome;4.2831656744009e-13!GO:0000313;organellar ribosome;4.2831656744009e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.3279634524579e-13!GO:0008219;cell death;5.75092492307597e-13!GO:0016265;death;5.75092492307597e-13!GO:0030163;protein catabolic process;6.34434889548819e-13!GO:0043687;post-translational protein modification;6.49527054778025e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;9.71954980215132e-13!GO:0000375;RNA splicing, via transesterification reactions;9.71954980215132e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.71954980215132e-13!GO:0048523;negative regulation of cellular process;1.0718613313969e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.25725800394946e-12!GO:0003954;NADH dehydrogenase activity;1.25725800394946e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25725800394946e-12!GO:0048193;Golgi vesicle transport;1.65538089612981e-12!GO:0042254;ribosome biogenesis and assembly;2.1319184326194e-12!GO:0006913;nucleocytoplasmic transport;2.37732461739119e-12!GO:0016887;ATPase activity;4.45515966229021e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;4.68048146394647e-12!GO:0003712;transcription cofactor activity;6.49855435709718e-12!GO:0009057;macromolecule catabolic process;6.53130350495901e-12!GO:0051169;nuclear transport;6.77467764066168e-12!GO:0000785;chromatin;1.41686505780812e-11!GO:0006323;DNA packaging;1.60433313221727e-11!GO:0044453;nuclear membrane part;1.77790838212272e-11!GO:0016604;nuclear body;1.86391781390604e-11!GO:0016192;vesicle-mediated transport;2.009116300245e-11!GO:0015630;microtubule cytoskeleton;2.72803210169704e-11!GO:0042623;ATPase activity, coupled;3.54191154906005e-11!GO:0003743;translation initiation factor activity;3.95099852853283e-11!GO:0031324;negative regulation of cellular metabolic process;1.02933501531788e-10!GO:0048519;negative regulation of biological process;1.07295045307891e-10!GO:0004386;helicase activity;1.07591098443083e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.61450891343769e-10!GO:0045271;respiratory chain complex I;1.61450891343769e-10!GO:0005747;mitochondrial respiratory chain complex I;1.61450891343769e-10!GO:0006413;translational initiation;1.65019999807482e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.69249421563342e-10!GO:0042773;ATP synthesis coupled electron transport;1.69249421563342e-10!GO:0044248;cellular catabolic process;2.19228032687732e-10!GO:0043067;regulation of programmed cell death;2.80990537558148e-10!GO:0042981;regulation of apoptosis;3.24804295340262e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.38014854132582e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.54872439592294e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.59367585751701e-10!GO:0006446;regulation of translational initiation;4.61982742534162e-10!GO:0008639;small protein conjugating enzyme activity;4.82175408193561e-10!GO:0006261;DNA-dependent DNA replication;8.47752584956149e-10!GO:0005789;endoplasmic reticulum membrane;8.73604720920407e-10!GO:0004842;ubiquitin-protein ligase activity;1.08155359913834e-09!GO:0009892;negative regulation of metabolic process;1.24181393369252e-09!GO:0051186;cofactor metabolic process;1.4628999112304e-09!GO:0005643;nuclear pore;1.52360974548718e-09!GO:0008026;ATP-dependent helicase activity;2.77122610323107e-09!GO:0016607;nuclear speck;4.01040738702197e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.08087117734969e-09!GO:0006403;RNA localization;4.80918703548889e-09!GO:0050789;regulation of biological process;4.83784143576316e-09!GO:0050657;nucleic acid transport;5.51680711978603e-09!GO:0051236;establishment of RNA localization;5.51680711978603e-09!GO:0050658;RNA transport;5.51680711978603e-09!GO:0006333;chromatin assembly or disassembly;6.2121921211204e-09!GO:0019787;small conjugating protein ligase activity;6.63939909696712e-09!GO:0006461;protein complex assembly;6.84322649536388e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.6864927993571e-09!GO:0005793;ER-Golgi intermediate compartment;8.86004922723892e-09!GO:0043566;structure-specific DNA binding;1.16138978211337e-08!GO:0051246;regulation of protein metabolic process;1.43481514335853e-08!GO:0006793;phosphorus metabolic process;1.86253338305425e-08!GO:0006796;phosphate metabolic process;1.86253338305425e-08!GO:0006399;tRNA metabolic process;1.89865297628761e-08!GO:0065002;intracellular protein transport across a membrane;2.05873391038599e-08!GO:0017038;protein import;2.83573635444825e-08!GO:0006364;rRNA processing;3.2238442308718e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.22950900087447e-08!GO:0016072;rRNA metabolic process;3.35973776667512e-08!GO:0016881;acid-amino acid ligase activity;3.80321777925782e-08!GO:0016564;transcription repressor activity;3.9076206503625e-08!GO:0003697;single-stranded DNA binding;4.20267120167448e-08!GO:0046930;pore complex;4.53824423701356e-08!GO:0005768;endosome;4.72298274995221e-08!GO:0007005;mitochondrion organization and biogenesis;5.1302363889373e-08!GO:0019222;regulation of metabolic process;5.8649347408493e-08!GO:0003924;GTPase activity;6.36119091359059e-08!GO:0009055;electron carrier activity;6.43359093164086e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.49304793638671e-08!GO:0065004;protein-DNA complex assembly;6.70034251110624e-08!GO:0051329;interphase of mitotic cell cycle;7.73333153973135e-08!GO:0043069;negative regulation of programmed cell death;8.24057616451697e-08!GO:0008565;protein transporter activity;1.11390981976172e-07!GO:0006732;coenzyme metabolic process;1.12876514212e-07!GO:0051325;interphase;1.15412244605984e-07!GO:0032446;protein modification by small protein conjugation;1.55573018481045e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.58689820102045e-07!GO:0051028;mRNA transport;1.85628960029605e-07!GO:0000775;chromosome, pericentric region;1.86556679895641e-07!GO:0016567;protein ubiquitination;2.07947065926945e-07!GO:0045786;negative regulation of progression through cell cycle;2.09932450062235e-07!GO:0006916;anti-apoptosis;2.17025096410863e-07!GO:0043066;negative regulation of apoptosis;2.27744793744913e-07!GO:0005819;spindle;2.799894801912e-07!GO:0009259;ribonucleotide metabolic process;3.45364546330804e-07!GO:0016568;chromatin modification;3.4560106378698e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.62286865193862e-07!GO:0016779;nucleotidyltransferase activity;3.66360601348377e-07!GO:0005813;centrosome;3.88428589572781e-07!GO:0005657;replication fork;4.07633202133483e-07!GO:0000075;cell cycle checkpoint;4.32178994365162e-07!GO:0005667;transcription factor complex;5.30523674842943e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.53522408832395e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.53522408832395e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.53522408832395e-07!GO:0007010;cytoskeleton organization and biogenesis;5.82264056427292e-07!GO:0016563;transcription activator activity;6.03086584059804e-07!GO:0016481;negative regulation of transcription;6.16473950883764e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.35174347289259e-07!GO:0016740;transferase activity;6.44657231818168e-07!GO:0005815;microtubule organizing center;6.74877619603309e-07!GO:0015986;ATP synthesis coupled proton transport;6.90958584042312e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.90958584042312e-07!GO:0006163;purine nucleotide metabolic process;7.0026689508556e-07!GO:0016310;phosphorylation;7.40021638360166e-07!GO:0048522;positive regulation of cellular process;7.41926782574865e-07!GO:0003714;transcription corepressor activity;1.07686348661325e-06!GO:0043038;amino acid activation;1.19044323063591e-06!GO:0006418;tRNA aminoacylation for protein translation;1.19044323063591e-06!GO:0043039;tRNA aminoacylation;1.19044323063591e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.64465852269817e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.92233654334411e-06!GO:0009150;purine ribonucleotide metabolic process;1.97265570929551e-06!GO:0051170;nuclear import;1.98784701681334e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.09568767845238e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.14031595119401e-06!GO:0006164;purine nucleotide biosynthetic process;2.20724900417202e-06!GO:0003682;chromatin binding;2.22812258114469e-06!GO:0009060;aerobic respiration;2.23237099002944e-06!GO:0009260;ribonucleotide biosynthetic process;2.52667598761383e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.85743240516101e-06!GO:0009141;nucleoside triphosphate metabolic process;2.9479636875637e-06!GO:0019899;enzyme binding;3.18037861394959e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.76669482208817e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.76669482208817e-06!GO:0000245;spliceosome assembly;4.05440274970035e-06!GO:0046034;ATP metabolic process;4.06638725223954e-06!GO:0007051;spindle organization and biogenesis;4.0941502025865e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.30705857871478e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.30705857871478e-06!GO:0016787;hydrolase activity;4.35703415045603e-06!GO:0019829;cation-transporting ATPase activity;4.36159534033312e-06!GO:0048475;coated membrane;4.56115287736567e-06!GO:0030117;membrane coat;4.56115287736567e-06!GO:0030120;vesicle coat;4.74402575465313e-06!GO:0030662;coated vesicle membrane;4.74402575465313e-06!GO:0006606;protein import into nucleus;4.89969899040294e-06!GO:0031497;chromatin assembly;5.08465020996223e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.37538213758641e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.07738623213605e-06!GO:0006754;ATP biosynthetic process;6.35890731579136e-06!GO:0006753;nucleoside phosphate metabolic process;6.35890731579136e-06!GO:0051188;cofactor biosynthetic process;6.49777561629516e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.27545097574132e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.62032105982756e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.62032105982756e-06!GO:0006334;nucleosome assembly;7.62032105982756e-06!GO:0005525;GTP binding;8.30046650123646e-06!GO:0045259;proton-transporting ATP synthase complex;8.77963068137894e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.1182043448894e-05!GO:0006613;cotranslational protein targeting to membrane;1.16097601719918e-05!GO:0000151;ubiquitin ligase complex;1.16547368747756e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.37654137271515e-05!GO:0051427;hormone receptor binding;1.48145188269425e-05!GO:0003690;double-stranded DNA binding;1.52974683613512e-05!GO:0031323;regulation of cellular metabolic process;1.55005248693285e-05!GO:0009056;catabolic process;1.58203918712419e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.99162257561956e-05!GO:0042802;identical protein binding;2.07881249142743e-05!GO:0045333;cellular respiration;2.67683590987712e-05!GO:0008094;DNA-dependent ATPase activity;2.73007161744686e-05!GO:0009108;coenzyme biosynthetic process;2.99735115142825e-05!GO:0045941;positive regulation of transcription;3.07640485519221e-05!GO:0005762;mitochondrial large ribosomal subunit;3.08753019456117e-05!GO:0000315;organellar large ribosomal subunit;3.08753019456117e-05!GO:0003724;RNA helicase activity;3.21503628985806e-05!GO:0051168;nuclear export;3.2738849523406e-05!GO:0035257;nuclear hormone receptor binding;3.29005627923844e-05!GO:0065007;biological regulation;3.43097505612489e-05!GO:0043623;cellular protein complex assembly;3.5642985682793e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.9514642575032e-05!GO:0005874;microtubule;3.97399300682732e-05!GO:0044440;endosomal part;4.00969024668621e-05!GO:0010008;endosome membrane;4.00969024668621e-05!GO:0045893;positive regulation of transcription, DNA-dependent;4.18728006934183e-05!GO:0044431;Golgi apparatus part;4.21533580057454e-05!GO:0009117;nucleotide metabolic process;4.63108740058762e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.88825673112753e-05!GO:0003713;transcription coactivator activity;5.55273643521579e-05!GO:0065009;regulation of a molecular function;6.20642768813842e-05!GO:0007264;small GTPase mediated signal transduction;6.23383376661989e-05!GO:0005788;endoplasmic reticulum lumen;7.02772124464288e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.13026119110686e-05!GO:0051789;response to protein stimulus;7.57328537194097e-05!GO:0006986;response to unfolded protein;7.57328537194097e-05!GO:0007243;protein kinase cascade;7.83359703187849e-05!GO:0005798;Golgi-associated vesicle;8.0217317616832e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.26032232403041e-05!GO:0006302;double-strand break repair;9.25968071380392e-05!GO:0032561;guanyl ribonucleotide binding;9.58924590238653e-05!GO:0019001;guanyl nucleotide binding;9.58924590238653e-05!GO:0003729;mRNA binding;0.000103161551252072!GO:0005769;early endosome;0.000104008842675313!GO:0004674;protein serine/threonine kinase activity;0.000111575767097996!GO:0008361;regulation of cell size;0.000119091664985663!GO:0006099;tricarboxylic acid cycle;0.000125959212492458!GO:0046356;acetyl-CoA catabolic process;0.000125959212492458!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000132604131271086!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000135857151540874!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000139788157421735!GO:0003899;DNA-directed RNA polymerase activity;0.000140316240378196!GO:0048518;positive regulation of biological process;0.000143706049809621!GO:0031252;leading edge;0.000143706049809621!GO:0043021;ribonucleoprotein binding;0.000157875802871428!GO:0048471;perinuclear region of cytoplasm;0.000160705375861258!GO:0006752;group transfer coenzyme metabolic process;0.00016201110949777!GO:0006350;transcription;0.00016656112860344!GO:0003684;damaged DNA binding;0.000182812343243832!GO:0000314;organellar small ribosomal subunit;0.000206884599707407!GO:0005763;mitochondrial small ribosomal subunit;0.000206884599707407!GO:0016049;cell growth;0.000215140562767334!GO:0005770;late endosome;0.000224611867653345!GO:0031988;membrane-bound vesicle;0.000230419546853803!GO:0006839;mitochondrial transport;0.000233137780643478!GO:0000082;G1/S transition of mitotic cell cycle;0.000235429983876785!GO:0051252;regulation of RNA metabolic process;0.000242245480007812!GO:0006950;response to stress;0.000248315452255121!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000253042774693759!GO:0051052;regulation of DNA metabolic process;0.000259503370692591!GO:0004298;threonine endopeptidase activity;0.000267391953099135!GO:0016023;cytoplasmic membrane-bound vesicle;0.000274675662252831!GO:0005856;cytoskeleton;0.000326226139310651!GO:0001558;regulation of cell growth;0.000326226139310651!GO:0007017;microtubule-based process;0.00034560680470709!GO:0006984;ER-nuclear signaling pathway;0.000347981046923387!GO:0006084;acetyl-CoA metabolic process;0.000364851319219291!GO:0042770;DNA damage response, signal transduction;0.000364851319219291!GO:0008632;apoptotic program;0.000368228467847839!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000379793500910895!GO:0008092;cytoskeletal protein binding;0.000387838449113994!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000400543748571161!GO:0016197;endosome transport;0.000400543748571161!GO:0030029;actin filament-based process;0.000422375527151563!GO:0016859;cis-trans isomerase activity;0.000482602666628772!GO:0008250;oligosaccharyl transferase complex;0.000501648197408106!GO:0050790;regulation of catalytic activity;0.000535502893970494!GO:0030867;rough endoplasmic reticulum membrane;0.000537747882407367!GO:0008186;RNA-dependent ATPase activity;0.000564140758217067!GO:0032508;DNA duplex unwinding;0.000615114028806219!GO:0032392;DNA geometric change;0.000615114028806219!GO:0005791;rough endoplasmic reticulum;0.000618773245407976!GO:0009109;coenzyme catabolic process;0.00070467189647956!GO:0000776;kinetochore;0.000711235634392782!GO:0006402;mRNA catabolic process;0.000718465677642301!GO:0007088;regulation of mitosis;0.000745997636225882!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000748860767107885!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000756160355303871!GO:0010468;regulation of gene expression;0.000779989089697823!GO:0000139;Golgi membrane;0.000808352002241171!GO:0005048;signal sequence binding;0.000853470591527323!GO:0006612;protein targeting to membrane;0.000899029989351552!GO:0007050;cell cycle arrest;0.000926532112187426!GO:0006268;DNA unwinding during replication;0.000948716248109298!GO:0008654;phospholipid biosynthetic process;0.000991726523193945!GO:0006284;base-excision repair;0.00100008652113795!GO:0051187;cofactor catabolic process;0.00105646648035665!GO:0048468;cell development;0.00106184541534207!GO:0043065;positive regulation of apoptosis;0.00107784254906741!GO:0031072;heat shock protein binding;0.00107837762856877!GO:0006310;DNA recombination;0.00110235100679364!GO:0004576;oligosaccharyl transferase activity;0.00114420660562301!GO:0003702;RNA polymerase II transcription factor activity;0.00115057917096538!GO:0033116;ER-Golgi intermediate compartment membrane;0.0011742829274848!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00119105773066835!GO:0008287;protein serine/threonine phosphatase complex;0.00120007075942359!GO:0007059;chromosome segregation;0.00122170198025379!GO:0016853;isomerase activity;0.00128478903097842!GO:0043681;protein import into mitochondrion;0.00137889256064481!GO:0031982;vesicle;0.00138940958861549!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00146502692860461!GO:0045792;negative regulation of cell size;0.00146507884262214!GO:0007052;mitotic spindle organization and biogenesis;0.0014719224220418!GO:0043068;positive regulation of programmed cell death;0.00148628021683765!GO:0045454;cell redox homeostasis;0.00149907917973111!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00152424788821716!GO:0004004;ATP-dependent RNA helicase activity;0.00157158840425132!GO:0030031;cell projection biogenesis;0.00157264531370579!GO:0048500;signal recognition particle;0.00158126482965665!GO:0043596;nuclear replication fork;0.00160109213824817!GO:0030308;negative regulation of cell growth;0.00163446845080516!GO:0016272;prefoldin complex;0.00164276102091139!GO:0030176;integral to endoplasmic reticulum membrane;0.00165703868287393!GO:0018196;peptidyl-asparagine modification;0.00175104289024268!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00175104289024268!GO:0001889;liver development;0.00179794993550605!GO:0005637;nuclear inner membrane;0.00196988577933365!GO:0051920;peroxiredoxin activity;0.00207428249600723!GO:0046983;protein dimerization activity;0.00209241180360043!GO:0007093;mitotic cell cycle checkpoint;0.00214769791728802!GO:0031410;cytoplasmic vesicle;0.0021497739467796!GO:0032774;RNA biosynthetic process;0.00215132708519499!GO:0005905;coated pit;0.00218944013966693!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00223341853146649!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00224137381749978!GO:0008601;protein phosphatase type 2A regulator activity;0.00234693894240286!GO:0006383;transcription from RNA polymerase III promoter;0.00240796932221053!GO:0051338;regulation of transferase activity;0.00244830615429893!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00244830615429893!GO:0019843;rRNA binding;0.00249152779482437!GO:0003678;DNA helicase activity;0.00250359769134386!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00250359769134386!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00250359769134386!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00250359769134386!GO:0030132;clathrin coat of coated pit;0.00250459830841336!GO:0006351;transcription, DNA-dependent;0.00268911363125015!GO:0008312;7S RNA binding;0.00271204630197933!GO:0045926;negative regulation of growth;0.00284177723669862!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00286111418918642!GO:0005885;Arp2/3 protein complex;0.00296022367082157!GO:0040008;regulation of growth;0.00305631841973725!GO:0006891;intra-Golgi vesicle-mediated transport;0.0030623506654923!GO:0005684;U2-dependent spliceosome;0.00306502183277879!GO:0016363;nuclear matrix;0.00306502183277879!GO:0016044;membrane organization and biogenesis;0.00307248185291733!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00313303821958705!GO:0000786;nucleosome;0.00313555921831341!GO:0006401;RNA catabolic process;0.00327750861562431!GO:0008033;tRNA processing;0.00331151576806677!GO:0004527;exonuclease activity;0.00338681042697684!GO:0016301;kinase activity;0.0033960679530227!GO:0000049;tRNA binding;0.00363778246665702!GO:0006338;chromatin remodeling;0.00382469639906903!GO:0003746;translation elongation factor activity;0.00385357744601346!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00388377705460189!GO:0006275;regulation of DNA replication;0.00394411316004648!GO:0015631;tubulin binding;0.00394554115138067!GO:0031901;early endosome membrane;0.00399295607125807!GO:0043488;regulation of mRNA stability;0.00401242519885985!GO:0043487;regulation of RNA stability;0.00401242519885985!GO:0031570;DNA integrity checkpoint;0.00401541333406994!GO:0009116;nucleoside metabolic process;0.00405893505295884!GO:0005773;vacuole;0.00406040209472712!GO:0000159;protein phosphatase type 2A complex;0.00415410032266994!GO:0007346;regulation of progression through mitotic cell cycle;0.00421861201402778!GO:0030433;ER-associated protein catabolic process;0.00430789058177316!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00430789058177316!GO:0045936;negative regulation of phosphate metabolic process;0.004341972374304!GO:0006611;protein export from nucleus;0.00437117566951581!GO:0048487;beta-tubulin binding;0.00441918936058087!GO:0043549;regulation of kinase activity;0.00452020129622703!GO:0006417;regulation of translation;0.00453079970865866!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00460958863115327!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00460958863115327!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00461510263674154!GO:0045047;protein targeting to ER;0.00461510263674154!GO:0009112;nucleobase metabolic process;0.004616741473384!GO:0043601;nuclear replisome;0.00480674973346146!GO:0030894;replisome;0.00480674973346146!GO:0006626;protein targeting to mitochondrion;0.00480674973346146!GO:0006352;transcription initiation;0.00481006980081388!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00483933844368231!GO:0006414;translational elongation;0.00484510617761356!GO:0006270;DNA replication initiation;0.00493960583726322!GO:0008637;apoptotic mitochondrial changes;0.00493960583726322!GO:0000792;heterochromatin;0.00511284134075718!GO:0001726;ruffle;0.0051730260494312!GO:0051287;NAD binding;0.00525827177730065!GO:0030663;COPI coated vesicle membrane;0.00540213960855104!GO:0030126;COPI vesicle coat;0.00540213960855104!GO:0030137;COPI-coated vesicle;0.00543109980265611!GO:0006405;RNA export from nucleus;0.00560961384724516!GO:0016311;dephosphorylation;0.00572098948755149!GO:0051087;chaperone binding;0.00574587984461109!GO:0007242;intracellular signaling cascade;0.00597869844841656!GO:0051053;negative regulation of DNA metabolic process;0.00611538831227048!GO:0008629;induction of apoptosis by intracellular signals;0.0061529659037775!GO:0033673;negative regulation of kinase activity;0.00625578667483321!GO:0006469;negative regulation of protein kinase activity;0.00625578667483321!GO:0032200;telomere organization and biogenesis;0.0063684520632705!GO:0000723;telomere maintenance;0.0063684520632705!GO:0000323;lytic vacuole;0.00639817303003156!GO:0005764;lysosome;0.00639817303003156!GO:0008139;nuclear localization sequence binding;0.00645474045998759!GO:0035258;steroid hormone receptor binding;0.00652970269253928!GO:0000228;nuclear chromosome;0.00675171360434533!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0069302693803455!GO:0030118;clathrin coat;0.00699243503006293!GO:0046966;thyroid hormone receptor binding;0.006997508560625!GO:0007265;Ras protein signal transduction;0.00702678042937547!GO:0006289;nucleotide-excision repair;0.00709560295441984!GO:0009893;positive regulation of metabolic process;0.00717261018709268!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00718483803356193!GO:0042326;negative regulation of phosphorylation;0.00718483803356193!GO:0050178;phenylpyruvate tautomerase activity;0.00723948986199877!GO:0007006;mitochondrial membrane organization and biogenesis;0.00738275052001287!GO:0003711;transcription elongation regulator activity;0.00751792549399901!GO:0004518;nuclease activity;0.00813826054493115!GO:0043022;ribosome binding;0.00833760304969458!GO:0030968;unfolded protein response;0.00833760304969458!GO:0000725;recombinational repair;0.00852149793386848!GO:0000724;double-strand break repair via homologous recombination;0.00852149793386848!GO:0043624;cellular protein complex disassembly;0.00875107442829981!GO:0009967;positive regulation of signal transduction;0.00880001376220422!GO:0046474;glycerophospholipid biosynthetic process;0.00885155290668526!GO:0004860;protein kinase inhibitor activity;0.00889694552602985!GO:0017166;vinculin binding;0.00907712868540518!GO:0044452;nucleolar part;0.00917195151117214!GO:0005876;spindle microtubule;0.00929255876032698!GO:0030521;androgen receptor signaling pathway;0.00942389547903858!GO:0051348;negative regulation of transferase activity;0.00948085692846043!GO:0016791;phosphoric monoester hydrolase activity;0.00956279449900676!GO:0004722;protein serine/threonine phosphatase activity;0.00961720203311357!GO:0006376;mRNA splice site selection;0.00965641635683406!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00965641635683406!GO:0008022;protein C-terminus binding;0.00977670039486692!GO:0042393;histone binding;0.00982438162397549!GO:0045859;regulation of protein kinase activity;0.0100356032993356!GO:0008234;cysteine-type peptidase activity;0.0103949883636449!GO:0030133;transport vesicle;0.0105561516137871!GO:0046489;phosphoinositide biosynthetic process;0.0106579150295631!GO:0009889;regulation of biosynthetic process;0.0110178499131454!GO:0015980;energy derivation by oxidation of organic compounds;0.0111812981687051!GO:0006695;cholesterol biosynthetic process;0.0113150791206706!GO:0051128;regulation of cellular component organization and biogenesis;0.0115727196620264!GO:0015992;proton transport;0.0118742435271073!GO:0009165;nucleotide biosynthetic process;0.0119935843808529!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0122575226705003!GO:0030880;RNA polymerase complex;0.0123948291413022!GO:0006672;ceramide metabolic process;0.0124047618787445!GO:0016126;sterol biosynthetic process;0.0125837546299131!GO:0006818;hydrogen transport;0.0127102160774199!GO:0030658;transport vesicle membrane;0.0127102160774199!GO:0030032;lamellipodium biogenesis;0.0128705026947164!GO:0001836;release of cytochrome c from mitochondria;0.0128705026947164!GO:0045449;regulation of transcription;0.0131120729277604!GO:0040029;regulation of gene expression, epigenetic;0.0134160560865542!GO:0031326;regulation of cellular biosynthetic process;0.0134560247726247!GO:0045045;secretory pathway;0.0134565480033457!GO:0006979;response to oxidative stress;0.0138127862186738!GO:0031124;mRNA 3'-end processing;0.013992339373517!GO:0043414;biopolymer methylation;0.0142744353729383!GO:0006354;RNA elongation;0.0143600720199826!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.014681458446005!GO:0015399;primary active transmembrane transporter activity;0.014681458446005!GO:0032984;macromolecular complex disassembly;0.0147248111223207!GO:0030027;lamellipodium;0.0149436272042969!GO:0005832;chaperonin-containing T-complex;0.0153854473637903!GO:0000922;spindle pole;0.0155893040506335!GO:0008156;negative regulation of DNA replication;0.0157609919626316!GO:0043241;protein complex disassembly;0.0158284820704741!GO:0000059;protein import into nucleus, docking;0.0159404467520697!GO:0016491;oxidoreductase activity;0.0166397278090723!GO:0006497;protein amino acid lipidation;0.0166397278090723!GO:0001952;regulation of cell-matrix adhesion;0.01707920496609!GO:0000086;G2/M transition of mitotic cell cycle;0.0170926471190207!GO:0046519;sphingoid metabolic process;0.0173314082596889!GO:0016251;general RNA polymerase II transcription factor activity;0.0180502585310069!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0180825583901148!GO:0046426;negative regulation of JAK-STAT cascade;0.0182659879963998!GO:0044454;nuclear chromosome part;0.0185747617680707!GO:0003677;DNA binding;0.0188554870551552!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0188815129168887!GO:0015002;heme-copper terminal oxidase activity;0.0188815129168887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0188815129168887!GO:0004129;cytochrome-c oxidase activity;0.0188815129168887!GO:0051101;regulation of DNA binding;0.0189782615816815!GO:0000077;DNA damage checkpoint;0.0190588351126662!GO:0006595;polyamine metabolic process;0.0193170446464288!GO:0004721;phosphoprotein phosphatase activity;0.0193724967030389!GO:0050681;androgen receptor binding;0.0193724967030389!GO:0006892;post-Golgi vesicle-mediated transport;0.0193817821058507!GO:0030119;AP-type membrane coat adaptor complex;0.0196127208061555!GO:0008408;3'-5' exonuclease activity;0.0196127208061555!GO:0022890;inorganic cation transmembrane transporter activity;0.0197135990917602!GO:0043281;regulation of caspase activity;0.0197612941930089!GO:0005669;transcription factor TFIID complex;0.0201545308349607!GO:0030660;Golgi-associated vesicle membrane;0.020595834642489!GO:0005862;muscle thin filament tropomyosin;0.0206919017493364!GO:0008283;cell proliferation;0.0213398962176828!GO:0030659;cytoplasmic vesicle membrane;0.0213681824048542!GO:0031325;positive regulation of cellular metabolic process;0.0214660261028478!GO:0006650;glycerophospholipid metabolic process;0.0222294170939629!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0231013338961638!GO:0000428;DNA-directed RNA polymerase complex;0.0231013338961638!GO:0005663;DNA replication factor C complex;0.0231899217965095!GO:0006091;generation of precursor metabolites and energy;0.0232108835662984!GO:0051059;NF-kappaB binding;0.0234180160952383!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0237543177306676!GO:0046822;regulation of nucleocytoplasmic transport;0.0237912574556977!GO:0005875;microtubule associated complex;0.0239687587025049!GO:0051716;cellular response to stimulus;0.0240319584409786!GO:0030384;phosphoinositide metabolic process;0.0240404438983482!GO:0006917;induction of apoptosis;0.0243582332114541!GO:0042158;lipoprotein biosynthetic process;0.0244446433700823!GO:0009119;ribonucleoside metabolic process;0.0247480376013039!GO:0031529;ruffle organization and biogenesis;0.0257143753545473!GO:0030833;regulation of actin filament polymerization;0.025738925207939!GO:0008630;DNA damage response, signal transduction resulting in induction of apoptosis;0.0261048008453659!GO:0050750;low-density lipoprotein receptor binding;0.026469908861683!GO:0006213;pyrimidine nucleoside metabolic process;0.0267451146515158!GO:0006144;purine base metabolic process;0.0268011447128912!GO:0032507;maintenance of cellular protein localization;0.0268548866622678!GO:0006607;NLS-bearing substrate import into nucleus;0.0269763269346438!GO:0007004;telomere maintenance via telomerase;0.0275065118469754!GO:0016741;transferase activity, transferring one-carbon groups;0.0275212681162076!GO:0022408;negative regulation of cell-cell adhesion;0.027660895235253!GO:0000781;chromosome, telomeric region;0.0279484542343606!GO:0030134;ER to Golgi transport vesicle;0.0280201136145235!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.028679875264506!GO:0047485;protein N-terminus binding;0.0289001486396597!GO:0008097;5S rRNA binding;0.0289001486396597!GO:0032259;methylation;0.0302014854366914!GO:0030131;clathrin adaptor complex;0.0306670544712483!GO:0008168;methyltransferase activity;0.0309012380182515!GO:0012502;induction of programmed cell death;0.0309042439523105!GO:0000910;cytokinesis;0.0310538085495945!GO:0046982;protein heterodimerization activity;0.0315364440367091!GO:0019900;kinase binding;0.0320749423336873!GO:0043284;biopolymer biosynthetic process;0.0325549380507785!GO:0030125;clathrin vesicle coat;0.0326101588755094!GO:0030665;clathrin coated vesicle membrane;0.0326101588755094!GO:0044433;cytoplasmic vesicle part;0.0329116235207058!GO:0000790;nuclear chromatin;0.0336126575682458!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0337017414523986!GO:0012506;vesicle membrane;0.0343430142063424!GO:0050662;coenzyme binding;0.0349613763593387!GO:0046483;heterocycle metabolic process;0.035076821077313!GO:0033239;negative regulation of amine metabolic process;0.0352079856608838!GO:0045763;negative regulation of amino acid metabolic process;0.0352079856608838!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0352079856608838!GO:0019783;small conjugating protein-specific protease activity;0.0359933704355481!GO:0022415;viral reproductive process;0.0360917167003546!GO:0006355;regulation of transcription, DNA-dependent;0.0360954913699331!GO:0019210;kinase inhibitor activity;0.0360954913699331!GO:0031625;ubiquitin protein ligase binding;0.0362216619930346!GO:0006509;membrane protein ectodomain proteolysis;0.0363797532171517!GO:0033619;membrane protein proteolysis;0.0363797532171517!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0370288570220465!GO:0007030;Golgi organization and biogenesis;0.037041160738576!GO:0022411;cellular component disassembly;0.0370629719756635!GO:0001953;negative regulation of cell-matrix adhesion;0.0377979335231662!GO:0031902;late endosome membrane;0.0379635245512608!GO:0005784;translocon complex;0.0381309844263635!GO:0006470;protein amino acid dephosphorylation;0.0391439771394265!GO:0008538;proteasome activator activity;0.0391439771394265!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0392229563459824!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0392229563459824!GO:0008047;enzyme activator activity;0.0393056425562272!GO:0008426;protein kinase C inhibitor activity;0.0397158907992383!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0397158907992383!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0397158907992383!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0397815264567717!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0397815264567717!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0397815264567717!GO:0030041;actin filament polymerization;0.040360213963943!GO:0008017;microtubule binding;0.0407737298752035!GO:0031123;RNA 3'-end processing;0.0409007562411797!GO:0050839;cell adhesion molecule binding;0.0409848233227786!GO:0019901;protein kinase binding;0.0416645532585222!GO:0030518;steroid hormone receptor signaling pathway;0.04190873676483!GO:0031575;G1/S transition checkpoint;0.0420743880731924!GO:0051098;regulation of binding;0.0424123674625311!GO:0043154;negative regulation of caspase activity;0.0428882289081059!GO:0019207;kinase regulator activity;0.043002772637476!GO:0030127;COPII vesicle coat;0.0431462021842319!GO:0012507;ER to Golgi transport vesicle membrane;0.0431462021842319!GO:0006278;RNA-dependent DNA replication;0.0437748619897812!GO:0016584;nucleosome positioning;0.0441759117206537!GO:0043086;negative regulation of catalytic activity;0.0442048064748666!GO:0005869;dynactin complex;0.0444135787915473!GO:0000118;histone deacetylase complex;0.0454727673849439!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0455348133075003!GO:0010257;NADH dehydrogenase complex assembly;0.0455348133075003!GO:0033108;mitochondrial respiratory chain complex assembly;0.0455348133075003!GO:0005083;small GTPase regulator activity;0.0463385303739033!GO:0004003;ATP-dependent DNA helicase activity;0.0463809318099281!GO:0051336;regulation of hydrolase activity;0.0487582349127859!GO:0035035;histone acetyltransferase binding;0.0488881633720441!GO:0019887;protein kinase regulator activity;0.0492490930572299!GO:0000096;sulfur amino acid metabolic process;0.0493646528511782!GO:0051651;maintenance of cellular localization;0.0496229814390005 | |||
|sample_id=10692 | |sample_id=10692 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=cervix | |sample_tissue=cervix | ||
|top_motifs=TP53:1.65933182835;ZEB1:1.59854417298;SP1:1.47334371731;TFDP1:1.42870977974;XCPE1{core}:1.33165254468;SNAI1..3:1.30587999888;VSX1,2:1.29345593393;E2F1..5:1.2058483109;NFY{A,B,C}:1.19022242281;PITX1..3:1.14862685252;HOX{A6,A7,B6,B7}:1.10802542726;ADNP_IRX_SIX_ZHX:1.09229913425;BREu{core}:1.01513843637;TEAD1:1.01063431903;ELK1,4_GABP{A,B1}:0.993112973104;NKX2-1,4:0.868792109138;ATF4:0.855341274488;MYOD1:0.841031557651;TFAP2B:0.819719402875;EGR1..3:0.81024463326;POU1F1:0.787634109354;FOXP1:0.734331127951;GFI1B:0.7037228433;CDC5L:0.686635095588;HIC1:0.685595271485;bHLH_family:0.634977567654;TFAP2{A,C}:0.627560355359;HBP1_HMGB_SSRP1_UBTF:0.601918356195;ZNF148:0.579877182635;GFI1:0.561639183679;POU6F1:0.557421830126;ARID5B:0.532919656631;CRX:0.49801450289;PAX8:0.490852711816;FOXQ1:0.481902315249;MAZ:0.472790738489;PAX5:0.436504764984;TEF:0.430573175443;FOS_FOS{B,L1}_JUN{B,D}:0.425100151025;NANOG:0.422445064198;MYB:0.409830596973;HIF1A:0.401876062901;NRF1:0.368928266966;PBX1:0.364517316443;ZNF143:0.331943671245;MTF1:0.301540419404;ONECUT1,2:0.298597487433;FOXN1:0.291581857137;BACH2:0.281841702215;SOX{8,9,10}:0.25709181634;LMO2:0.24689027427;RBPJ:0.246578072581;NFE2:0.215879657475;ZFP161:0.214429646053;FOXD3:0.212429942013;NFIX:0.209421284807;AHR_ARNT_ARNT2:0.204887383335;OCT4_SOX2{dimer}:0.197234941707;POU2F1..3:0.195364219778;IKZF1:0.166441013653;HLF:0.150575575452;FOXL1:0.14945531052;PDX1:0.144573136537;ZNF384:0.143599240078;NKX2-2,8:0.138131918162;IRF7:0.135882532878;TBX4,5:0.128353605912;CEBPA,B_DDIT3:0.116898642495;MED-1{core}:0.110609634979;FOX{D1,D2}:0.100067153238;SOX17:0.0893048576834;NKX6-1,2:0.0752844981762;CREB1:0.0631224229784;FOSL2:0.0584167760106;HNF1A:0.0464491249145;RFX1:0.0360103801413;GTF2A1,2:0.0339130537847;ZIC1..3:0.0312252203661;FOXO1,3,4:0.0256687377102;PPARG:0.0146313067548;MYBL2:0.013758193954;LHX3,4:0.00566499986448;LEF1_TCF7_TCF7L1,2:-0.00274111911245;NKX2-3_NKX2-5:-0.00500010033299;ZNF423:-0.00710096449337;ATF5_CREB3:-0.00872894727789;FOXA2:-0.0181115769466;STAT1,3:-0.0190747292184;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0243990110524;ATF2:-0.0289501545963;MEF2{A,B,C,D}:-0.0338092187362;NKX3-1:-0.0577135852203;STAT5{A,B}:-0.0824490350619;MTE{core}:-0.108707667744;ZBTB6:-0.127983880381;BPTF:-0.1339237143;TOPORS:-0.140159612605;POU5F1:-0.173443892865;EN1,2:-0.177066965512;PATZ1:-0.182740184115;SOX2:-0.185857404703;GTF2I:-0.197317831417;CDX1,2,4:-0.211328480871;ELF1,2,4:-0.21606630166;PRRX1,2:-0.217987621474;GLI1..3:-0.245781950556;HOX{A4,D4}:-0.246414853987;EVI1:-0.263570809031;SRF:-0.265949751997;NFKB1_REL_RELA:-0.271470310903;TFCP2:-0.277972821885;GATA6:-0.285195832432;T:-0.301165254459;TLX1..3_NFIC{dimer}:-0.309505945951;STAT2,4,6:-0.311051122491;NFIL3:-0.311593685957;HOX{A5,B5}:-0.312427707086;HES1:-0.313311438985;FOX{F1,F2,J1}:-0.32953439176;TBP:-0.338786959374;TLX2:-0.352445298221;ATF6:-0.35321501019;HMGA1,2:-0.36740859855;HOXA9_MEIS1:-0.368275346782;XBP1:-0.374232811242;ZNF238:-0.383812271916;HSF1,2:-0.395575796646;PAX1,9:-0.416560395839;DBP:-0.423381558221;PAX2:-0.424121018077;AIRE:-0.429022616336;ESR1:-0.429312846377;FOX{I1,J2}:-0.429350768738;NFE2L2:-0.443752145103;REST:-0.453641735021;RUNX1..3:-0.457249977056;HNF4A_NR2F1,2:-0.468289309562;NKX3-2:-0.47337906323;ZBTB16:-0.479142727669;IKZF2:-0.487466125491;NR6A1:-0.499744635649;FOXM1:-0.50298814859;RORA:-0.507758949595;CUX2:-0.520772028312;SPIB:-0.526220879944;MZF1:-0.553355200001;UFEwm:-0.578037295343;SOX5:-0.617433648313;ETS1,2:-0.619650539269;JUN:-0.621863828497;IRF1,2:-0.645039856311;EP300:-0.668119385554;AR:-0.681764744876;NHLH1,2:-0.684979372601;GZF1:-0.685349003192;PAX6:-0.687856422847;PAX3,7:-0.692088194186;EBF1:-0.704430577157;FOXP3:-0.726997762174;MYFfamily:-0.732040237281;YY1:-0.733035247538;SPI1:-0.735126606926;ALX1:-0.736839160542;TFAP4:-0.738679546432;RREB1:-0.758075492815;NFATC1..3:-0.760773278186;SREBF1,2:-0.761510175683;NR5A1,2:-0.790582014943;RFX2..5_RFXANK_RFXAP:-0.81820874947;KLF4:-0.81876147729;NR1H4:-0.820980143731;PRDM1:-0.865908430062;POU3F1..4:-0.870612244412;HAND1,2:-0.9836126082;MAFB:-1.00135391324;HMX1:-1.00876207186;GATA4:-1.03949278139;DMAP1_NCOR{1,2}_SMARC:-1.10516368459;TAL1_TCF{3,4,12}:-1.10899628031;NR3C1:-1.14330543183;TGIF1:-1.20219843079;NFE2L1:-1.25117545213;SMAD1..7,9:-1.27824471331;PAX4:-1.28038520658;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.30836743173;RXRA_VDR{dimer}:-1.32075645934;SPZ1:-1.42761773938;ESRRA:-1.633595341;RXR{A,B,G}:-1.63361714261;GCM1,2:-1.78883369272;ALX4:-1.93247971081;NANOG{mouse}:-1.93276759274 | |top_motifs=TP53:1.65933182835;ZEB1:1.59854417298;SP1:1.47334371731;TFDP1:1.42870977974;XCPE1{core}:1.33165254468;SNAI1..3:1.30587999888;VSX1,2:1.29345593393;E2F1..5:1.2058483109;NFY{A,B,C}:1.19022242281;PITX1..3:1.14862685252;HOX{A6,A7,B6,B7}:1.10802542726;ADNP_IRX_SIX_ZHX:1.09229913425;BREu{core}:1.01513843637;TEAD1:1.01063431903;ELK1,4_GABP{A,B1}:0.993112973104;NKX2-1,4:0.868792109138;ATF4:0.855341274488;MYOD1:0.841031557651;TFAP2B:0.819719402875;EGR1..3:0.81024463326;POU1F1:0.787634109354;FOXP1:0.734331127951;GFI1B:0.7037228433;CDC5L:0.686635095588;HIC1:0.685595271485;bHLH_family:0.634977567654;TFAP2{A,C}:0.627560355359;HBP1_HMGB_SSRP1_UBTF:0.601918356195;ZNF148:0.579877182635;GFI1:0.561639183679;POU6F1:0.557421830126;ARID5B:0.532919656631;CRX:0.49801450289;PAX8:0.490852711816;FOXQ1:0.481902315249;MAZ:0.472790738489;PAX5:0.436504764984;TEF:0.430573175443;FOS_FOS{B,L1}_JUN{B,D}:0.425100151025;NANOG:0.422445064198;MYB:0.409830596973;HIF1A:0.401876062901;NRF1:0.368928266966;PBX1:0.364517316443;ZNF143:0.331943671245;MTF1:0.301540419404;ONECUT1,2:0.298597487433;FOXN1:0.291581857137;BACH2:0.281841702215;SOX{8,9,10}:0.25709181634;LMO2:0.24689027427;RBPJ:0.246578072581;NFE2:0.215879657475;ZFP161:0.214429646053;FOXD3:0.212429942013;NFIX:0.209421284807;AHR_ARNT_ARNT2:0.204887383335;OCT4_SOX2{dimer}:0.197234941707;POU2F1..3:0.195364219778;IKZF1:0.166441013653;HLF:0.150575575452;FOXL1:0.14945531052;PDX1:0.144573136537;ZNF384:0.143599240078;NKX2-2,8:0.138131918162;IRF7:0.135882532878;TBX4,5:0.128353605912;CEBPA,B_DDIT3:0.116898642495;MED-1{core}:0.110609634979;FOX{D1,D2}:0.100067153238;SOX17:0.0893048576834;NKX6-1,2:0.0752844981762;CREB1:0.0631224229784;FOSL2:0.0584167760106;HNF1A:0.0464491249145;RFX1:0.0360103801413;GTF2A1,2:0.0339130537847;ZIC1..3:0.0312252203661;FOXO1,3,4:0.0256687377102;PPARG:0.0146313067548;MYBL2:0.013758193954;LHX3,4:0.00566499986448;LEF1_TCF7_TCF7L1,2:-0.00274111911245;NKX2-3_NKX2-5:-0.00500010033299;ZNF423:-0.00710096449337;ATF5_CREB3:-0.00872894727789;FOXA2:-0.0181115769466;STAT1,3:-0.0190747292184;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0243990110524;ATF2:-0.0289501545963;MEF2{A,B,C,D}:-0.0338092187362;NKX3-1:-0.0577135852203;STAT5{A,B}:-0.0824490350619;MTE{core}:-0.108707667744;ZBTB6:-0.127983880381;BPTF:-0.1339237143;TOPORS:-0.140159612605;POU5F1:-0.173443892865;EN1,2:-0.177066965512;PATZ1:-0.182740184115;SOX2:-0.185857404703;GTF2I:-0.197317831417;CDX1,2,4:-0.211328480871;ELF1,2,4:-0.21606630166;PRRX1,2:-0.217987621474;GLI1..3:-0.245781950556;HOX{A4,D4}:-0.246414853987;EVI1:-0.263570809031;SRF:-0.265949751997;NFKB1_REL_RELA:-0.271470310903;TFCP2:-0.277972821885;GATA6:-0.285195832432;T:-0.301165254459;TLX1..3_NFIC{dimer}:-0.309505945951;STAT2,4,6:-0.311051122491;NFIL3:-0.311593685957;HOX{A5,B5}:-0.312427707086;HES1:-0.313311438985;FOX{F1,F2,J1}:-0.32953439176;TBP:-0.338786959374;TLX2:-0.352445298221;ATF6:-0.35321501019;HMGA1,2:-0.36740859855;HOXA9_MEIS1:-0.368275346782;XBP1:-0.374232811242;ZNF238:-0.383812271916;HSF1,2:-0.395575796646;PAX1,9:-0.416560395839;DBP:-0.423381558221;PAX2:-0.424121018077;AIRE:-0.429022616336;ESR1:-0.429312846377;FOX{I1,J2}:-0.429350768738;NFE2L2:-0.443752145103;REST:-0.453641735021;RUNX1..3:-0.457249977056;HNF4A_NR2F1,2:-0.468289309562;NKX3-2:-0.47337906323;ZBTB16:-0.479142727669;IKZF2:-0.487466125491;NR6A1:-0.499744635649;FOXM1:-0.50298814859;RORA:-0.507758949595;CUX2:-0.520772028312;SPIB:-0.526220879944;MZF1:-0.553355200001;UFEwm:-0.578037295343;SOX5:-0.617433648313;ETS1,2:-0.619650539269;JUN:-0.621863828497;IRF1,2:-0.645039856311;EP300:-0.668119385554;AR:-0.681764744876;NHLH1,2:-0.684979372601;GZF1:-0.685349003192;PAX6:-0.687856422847;PAX3,7:-0.692088194186;EBF1:-0.704430577157;FOXP3:-0.726997762174;MYFfamily:-0.732040237281;YY1:-0.733035247538;SPI1:-0.735126606926;ALX1:-0.736839160542;TFAP4:-0.738679546432;RREB1:-0.758075492815;NFATC1..3:-0.760773278186;SREBF1,2:-0.761510175683;NR5A1,2:-0.790582014943;RFX2..5_RFXANK_RFXAP:-0.81820874947;KLF4:-0.81876147729;NR1H4:-0.820980143731;PRDM1:-0.865908430062;POU3F1..4:-0.870612244412;HAND1,2:-0.9836126082;MAFB:-1.00135391324;HMX1:-1.00876207186;GATA4:-1.03949278139;DMAP1_NCOR{1,2}_SMARC:-1.10516368459;TAL1_TCF{3,4,12}:-1.10899628031;NR3C1:-1.14330543183;TGIF1:-1.20219843079;NFE2L1:-1.25117545213;SMAD1..7,9:-1.27824471331;PAX4:-1.28038520658;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.30836743173;RXRA_VDR{dimer}:-1.32075645934;SPZ1:-1.42761773938;ESRRA:-1.633595341;RXR{A,B,G}:-1.63361714261;GCM1,2:-1.78883369272;ALX4:-1.93247971081;NANOG{mouse}:-1.93276759274 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10692-109F8;search_select_hide=table117:FF:10692-109F8 | |||
}} | }} | ||
Latest revision as of 14:33, 3 June 2020
| Name: | large cell non-keratinizing squamous carcinoma cell line:SKG-II-SF |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11825 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11825
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11825
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.052 |
| 10 | 10 | 0.201 |
| 100 | 100 | 0.739 |
| 101 | 101 | 0.547 |
| 102 | 102 | 0.568 |
| 103 | 103 | 0.225 |
| 104 | 104 | 0.633 |
| 105 | 105 | 0.549 |
| 106 | 106 | 0.112 |
| 107 | 107 | 0.722 |
| 108 | 108 | 0.7 |
| 109 | 109 | 0.942 |
| 11 | 11 | 0.0565 |
| 110 | 110 | 0.299 |
| 111 | 111 | 0.198 |
| 112 | 112 | 0.148 |
| 113 | 113 | 0.201 |
| 114 | 114 | 0.0157 |
| 115 | 115 | 0.712 |
| 116 | 116 | 0.47 |
| 117 | 117 | 0.264 |
| 118 | 118 | 0.638 |
| 119 | 119 | 0.0901 |
| 12 | 12 | 0.995 |
| 120 | 120 | 0.394 |
| 121 | 121 | 0.211 |
| 122 | 122 | 0.262 |
| 123 | 123 | 0.993 |
| 124 | 124 | 0.00563 |
| 125 | 125 | 0.15 |
| 126 | 126 | 0.645 |
| 127 | 127 | 0.616 |
| 128 | 128 | 0.00936 |
| 129 | 129 | 0.177 |
| 13 | 13 | 0.873 |
| 130 | 130 | 0.259 |
| 131 | 131 | 0.949 |
| 132 | 132 | 0.632 |
| 133 | 133 | 0.231 |
| 134 | 134 | 0.164 |
| 135 | 135 | 0.0104 |
| 136 | 136 | 0.0884 |
| 137 | 137 | 0.355 |
| 138 | 138 | 0.802 |
| 139 | 139 | 0.00265 |
| 14 | 14 | 0.499 |
| 140 | 140 | 0.265 |
| 141 | 141 | 0.6 |
| 142 | 142 | 0.263 |
| 143 | 143 | 0.012 |
| 144 | 144 | 0.163 |
| 145 | 145 | 0.15 |
| 146 | 146 | 0.917 |
| 147 | 147 | 0.846 |
| 148 | 148 | 0.0424 |
| 149 | 149 | 0.0167 |
| 15 | 15 | 0.227 |
| 150 | 150 | 0.85 |
| 151 | 151 | 0.435 |
| 152 | 152 | 0.875 |
| 153 | 153 | 0.352 |
| 154 | 154 | 0.77 |
| 155 | 155 | 0.695 |
| 156 | 156 | 0.513 |
| 157 | 157 | 0.233 |
| 158 | 158 | 0.325 |
| 159 | 159 | 0.594 |
| 16 | 16 | 0.369 |
| 160 | 160 | 0.155 |
| 161 | 161 | 0.667 |
| 162 | 162 | 0.823 |
| 163 | 163 | 0.846 |
| 164 | 164 | 0.625 |
| 165 | 165 | 0.947 |
| 166 | 166 | 0.835 |
| 167 | 167 | 0.891 |
| 168 | 168 | 0.385 |
| 169 | 169 | 0.0474 |
| 17 | 17 | 0.231 |
| 18 | 18 | 0.138 |
| 19 | 19 | 0.103 |
| 2 | 2 | 0.548 |
| 20 | 20 | 0.2 |
| 21 | 21 | 0.746 |
| 22 | 22 | 0.131 |
| 23 | 23 | 0.377 |
| 24 | 24 | 0.784 |
| 25 | 25 | 0.491 |
| 26 | 26 | 0.198 |
| 27 | 27 | 0.0604 |
| 28 | 28 | 0.841 |
| 29 | 29 | 0.372 |
| 3 | 3 | 0.046 |
| 30 | 30 | 0.739 |
| 31 | 31 | 0.352 |
| 32 | 32 | 0.00445 |
| 33 | 33 | 0.692 |
| 34 | 34 | 0.402 |
| 35 | 35 | 0.0243 |
| 36 | 36 | 0.922 |
| 37 | 37 | 0.0976 |
| 38 | 38 | 0.509 |
| 39 | 39 | 0.59 |
| 4 | 4 | 0.758 |
| 40 | 40 | 0.476 |
| 41 | 41 | 0.0562 |
| 42 | 42 | 0.312 |
| 43 | 43 | 0.0765 |
| 44 | 44 | 0.014 |
| 45 | 45 | 0.701 |
| 46 | 46 | 0.0209 |
| 47 | 47 | 0.193 |
| 48 | 48 | 0.222 |
| 49 | 49 | 0.143 |
| 5 | 5 | 0.0689 |
| 50 | 50 | 0.771 |
| 51 | 51 | 0.271 |
| 52 | 52 | 0.679 |
| 53 | 53 | 0.6 |
| 54 | 54 | 0.404 |
| 55 | 55 | 0.616 |
| 56 | 56 | 0.584 |
| 57 | 57 | 0.639 |
| 58 | 58 | 0.273 |
| 59 | 59 | 0.0896 |
| 6 | 6 | 0.725 |
| 60 | 60 | 0.229 |
| 61 | 61 | 0.859 |
| 62 | 62 | 0.0501 |
| 63 | 63 | 0.44 |
| 64 | 64 | 0.306 |
| 65 | 65 | 0.215 |
| 66 | 66 | 0.159 |
| 67 | 67 | 0.593 |
| 68 | 68 | 0.334 |
| 69 | 69 | 0.264 |
| 7 | 7 | 0.49 |
| 70 | 70 | 0.0963 |
| 71 | 71 | 0.133 |
| 72 | 72 | 0.438 |
| 73 | 73 | 0.559 |
| 74 | 74 | 0.0348 |
| 75 | 75 | 0.209 |
| 76 | 76 | 0.832 |
| 77 | 77 | 0.181 |
| 78 | 78 | 0.941 |
| 79 | 79 | 0.00195 |
| 8 | 8 | 0.0432 |
| 80 | 80 | 0.669 |
| 81 | 81 | 0.142 |
| 82 | 82 | 0.0314 |
| 83 | 83 | 0.315 |
| 84 | 84 | 0.939 |
| 85 | 85 | 0.00106 |
| 86 | 86 | 0.283 |
| 87 | 87 | 0.207 |
| 88 | 88 | 0.912 |
| 89 | 89 | 0.11 |
| 9 | 9 | 0.177 |
| 90 | 90 | 0.00987 |
| 91 | 91 | 0.157 |
| 92 | 92 | 0.0377 |
| 93 | 93 | 0.104 |
| 94 | 94 | 0.025 |
| 95 | 95 | 0.729 |
| 96 | 96 | 0.11 |
| 97 | 97 | 0.755 |
| 98 | 98 | 0.0664 |
| 99 | 99 | 0.975 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11825
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102202 lung squamous cell carcinoma cell line sample
FF:0102205 large cell lung cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
1749 (squamous cell carcinoma)
4556 (lung large cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102205 (large cell lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
