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{{f5samples
{{f5samples
|id=FF:10612-108F9
|DRA_sample_Accession=CAGE@SAMD00004903
|name=gastric adenocarcinoma cell line:MKN45, biol_rep1
|accession_numbers=CAGE;DRX007891;DRR008763;DRZ000188;DRZ001573;DRZ011538;DRZ012923
|sample_id=10612
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|rna_tube_id=108F9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178
|rna_box=108
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119
|rna_position=F9
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0101225
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1001
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!270.46!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.07!115.85!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.06!112.68!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.77!58.50!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.67!52.02!PPARG;;chr13:73633131..73633149,+!p1@KLF5!1.59!381.26!KLF5;;chr17:74137321..74137337,-!p1@FOXJ1!1.57!36.17!FOXJ1;;chr20:42984330..42984364,+!p2@HNF4A!1.55!34.44!HNF4A;;chr20:22564895..22564910,-!p1@FOXA2!1.48!29.39!FOXA2;;chr8:102504651..102504683,+!p1@GRHL2!1.46!28.10!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.39!23.63!FOXA3;;chr11:34645791..34645836,+!p3@EHF!1.38!23.20!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.38!23.20!ONECUT3;;chr6:29648890..29648944,-!p1@ZFP57!1.38!22.77!ZFP57;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.52!TFAP2A;;chr17:41622765..41622821,-!p2@ETV4!1.35!32.28!ETV4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.75!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.30!39.62!C11orf9;;chr3:169381420..169381535,-!p1@MECOM!1.30!22.05!MECOM;;chr17:70117153..70117174,+!p1@SOX9!1.28!182.27!SOX9;;chr12:54380404..54380433,+!p3@HOXC10!1.28!17.87!HOXC10;;chr7:156803329..156803362,-!p1@MNX1!1.25!16.71!MNX1;;chr3:168864315..168864339,-!p2@MECOM!1.24!26.94!MECOM;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.86!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.16!IRF6;;chr19:50432453..50432468,+!p1@ATF5!1.17!764.26!ATF5;;chr16:52581025..52581072,-!p1@TOX3!1.17!13.69!TOX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!68.59!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.16!30.40!PPARG;;chr1:27240455..27240474,-!p1@NR0B2!1.15!12.97!NR0B2;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.96!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!1.11!11.82!ETV4;;chr11:34642656..34642667,+!p2@EHF!1.09!11.38!EHF;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.17!RCOR2;;chr3:32023232..32023273,+!p1@ZNF860!1.04!14.41!ZNF860;;chr17:41622925..41622976,-!p3@ETV4!1.03!14.70!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!1.02!9.51!HOXC4;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.51!IRX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.37!TFCP2L1;;chr7:73038839..73038862,-!p1@MLXIPL!1.01!9.22!MLXIPL;;chr12:54447599..54447630,+!p3@HOXC4!1.00!11.24!HOXC4;;chr1:197881592..197881617,+!p6@LHX9!1.00!8.93!LHX9;;chr9:96717629..96717644,-!p1@BARX1!0.99!8.79!BARX1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.40!PITX1;;chr17:46687959..46688007,-!p2@HOXB7!0.98!11.82!HOXB7;;chr7:14028488..14028516,-!p2@ETV1!0.97!9.22!ETV1;;chr10:28032421..28032494,-!p2@MKX!0.97!8.36!MKX;;chr5:150284532..150284549,-!p1@ZNF300!0.96!17.29!ZNF300;;chr12:54380036..54380091,+!p4@HOXC10!0.96!8.21!HOXC10;;chr12:54379136..54379150,+!p4@HOXC5!0.96!8.07!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.54!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.95!7.92!GATA4;;chr17:36105042..36105060,-!p1@HNF1B!0.95!7.92!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.94!33.72!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.92!9.37!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.91!13.11!GATA6;;chr7:27219833..27219845,-!p7@HOXA10!0.91!7.06!HOXA10;;chr12:54378923..54378966,+!p1@HOXC10!0.91!7.06!HOXC10;;chr1:42801540..42801562,-!p4@FOXJ3!0.91!7.06!FOXJ3;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.82!MSX2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.92!MSX2;;chr11:2291814..2291825,-!p2@ASCL2!0.90!6.92!ASCL2;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.77!PAX9;;chr11:65554528..65554546,+!p1@OVOL1!0.88!6.63!OVOL1;;chr20:22565370..22565388,-!p2@FOXA2!0.88!6.63!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.34!SIM2;;chr6:41514305..41514359,+!p2@FOXP4!0.86!55.33!FOXP4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.20!IKZF3;;chr9:129376201..129376225,+!p1@LMX1B!0.86!6.20!LMX1B;;chr7:14029283..14029311,-!p1@ETV1!0.85!34.44!ETV1;;chr19:33865009..33865090,+!p3@CEBPG!0.85!8.21!CEBPG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.64!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.35!MECOM;;chr11:32457103..32457123,-!p3@WT1!0.82!5.62!WT1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.82!5.62!EN2;;chr17:41622834..41622883,-!p6@ETV4!0.81!6.77!ETV4;;chr16:52580953..52580992,-!p2@TOX3!0.81!5.48!TOX3;;chr1:10856639..10856662,-!p2@CASZ1!0.81!5.48!CASZ1;;chr18:3449330..3449344,+!p10@TGIF1!0.80!7.20!TGIF1;;chr3:168865250..168865272,-!p5@MECOM!0.80!5.33!MECOM;;chr6:135502501..135502546,+!p1@MYB!0.79!6.34!MYB;;chr12:54332608..54332636,+!p1@HOXC13!0.79!5.19!HOXC13;;chr13:28543285..28543314,-!p2@CDX2!0.79!5.19!CDX2;;chr6:41514078..41514158,+!p1@FOXP4!0.78!49.28!FOXP4;;chr6:34524093..34524135,-!p1@SPDEF!0.77!4.90!SPDEF;;chr1:119530493..119530572,-!p1@TBX15!0.77!4.90!TBX15;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.90!HEYL;;chr11:32457075..32457095,-!p1@WT1!0.77!4.90!WT1;;chr10:114711019..114711041,+!p7@TCF7L2!0.76!7.49!TCF7L2;;chr3:18486354..18486377,-!p2@SATB1!0.76!6.05!SATB1;;chr2:177053386..177053402,+!p1@HOXD1!0.76!4.75!HOXD1;;chr7:27190547..27190591,-!p1@HOXA6!0.76!4.75!HOXA6;;chr17:36105074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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_tissue=stomach
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=62
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.07000
|rna_od260/280=2.07000
|sample_cell_type=unclassifiable
|sample_cell_line=MKN45
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=gastric adenocarcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=149.48025
|rna_concentration=1.99307
|sample_note=
|profile_hcage=CNhs11819,LSID829,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000945,UBERON:0001007,UBERON:0001041,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:299,DOID:305,DOID:3119,DOID:4
|sample_description=
 
|fonse_cell_line=FF:0100787,FF:0101120
|fonse_cell_line=FF:0100787,FF:0101120
|fonse_cell_line_closure=FF:0100787,FF:0101120
|fonse_cell_line_closure=FF:0100787,FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg38.nobarcode.ctss.bed.gz
|id=FF:10612-108F9
|is_a=EFO:0002091;;FF:0000210;;FF:0101225
|is_obsolete=
|library_id=CNhs11819
|library_id_phase_based=2:CNhs11819
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10612
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10612
|name=gastric adenocarcinoma cell line:MKN45
|namespace=FANTOM5
|part_of=
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|profile_rnaseq=
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|rna_box=108
|rna_catalog_number=
|rna_concentration=1.99307
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.07
|rna_od260/280=2.07
|rna_position=F9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108F9
|rna_weight_ug=149.48025
|sample_age=62
|sample_category=cell lines
|sample_cell_catalog=RCB1001
|sample_cell_line=MKN45
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=gastric adenocarcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.526994719494e-269!GO:0043226;organelle;1.16622634266853e-223!GO:0043231;intracellular membrane-bound organelle;1.54273453900058e-223!GO:0043227;membrane-bound organelle;2.17078185746701e-223!GO:0043229;intracellular organelle;2.90250940815899e-223!GO:0005737;cytoplasm;6.63123420798029e-186!GO:0044422;organelle part;1.92835841193189e-150!GO:0044446;intracellular organelle part;8.54011282800046e-149!GO:0044444;cytoplasmic part;8.56304735922829e-139!GO:0044237;cellular metabolic process;7.38413011390995e-106!GO:0044238;primary metabolic process;3.0314901291498e-103!GO:0032991;macromolecular complex;1.81486233393754e-97!GO:0043170;macromolecule metabolic process;1.7567771535354e-96!GO:0030529;ribonucleoprotein complex;2.61789821533288e-92!GO:0005634;nucleus;1.90302277052272e-91!GO:0043233;organelle lumen;8.60759255882143e-82!GO:0031974;membrane-enclosed lumen;8.60759255882143e-82!GO:0003723;RNA binding;4.17546826220461e-79!GO:0044428;nuclear part;3.45721638410416e-77!GO:0005739;mitochondrion;5.98626536203612e-76!GO:0005515;protein binding;1.64000662455245e-59!GO:0043283;biopolymer metabolic process;1.36154292336095e-58!GO:0005840;ribosome;2.81320445662227e-57!GO:0006396;RNA processing;7.74413411785853e-56!GO:0006412;translation;2.39064036561395e-55!GO:0010467;gene expression;2.56178801675118e-55!GO:0031090;organelle membrane;5.31419530585037e-55!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.64154958957207e-50!GO:0019538;protein metabolic process;7.25260116105433e-50!GO:0044429;mitochondrial part;7.40603761055669e-50!GO:0003735;structural constituent of ribosome;2.94366611070599e-49!GO:0031981;nuclear lumen;5.14001419814212e-48!GO:0043234;protein complex;1.91780543413967e-46!GO:0009058;biosynthetic process;3.39022831159143e-46!GO:0044267;cellular protein metabolic process;6.69378464353842e-46!GO:0044260;cellular macromolecule metabolic process;1.92089083314813e-45!GO:0044249;cellular biosynthetic process;5.70909654309087e-45!GO:0015031;protein transport;1.12326525444051e-44!GO:0009059;macromolecule biosynthetic process;1.19332771446207e-44!GO:0033036;macromolecule localization;1.04982805974521e-43!GO:0031967;organelle envelope;1.94600903962948e-42!GO:0031975;envelope;3.47351833828343e-42!GO:0033279;ribosomal subunit;1.69979158138047e-41!GO:0016043;cellular component organization and biogenesis;6.03920430439167e-41!GO:0016071;mRNA metabolic process;1.60176580212769e-40!GO:0045184;establishment of protein localization;2.38661401649401e-40!GO:0008104;protein localization;7.36747307707986e-40!GO:0005829;cytosol;3.36758254684941e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.32281514919136e-35!GO:0008380;RNA splicing;1.2352406928345e-34!GO:0006397;mRNA processing;1.48428057661285e-34!GO:0043228;non-membrane-bound organelle;6.00407101409628e-34!GO:0043232;intracellular non-membrane-bound organelle;6.00407101409628e-34!GO:0003676;nucleic acid binding;3.86682784497056e-33!GO:0046907;intracellular transport;7.17999526340425e-33!GO:0006996;organelle organization and biogenesis;7.39601372205082e-32!GO:0006259;DNA metabolic process;1.48117118990789e-30!GO:0005740;mitochondrial envelope;2.41451165486762e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.80428366383705e-30!GO:0006886;intracellular protein transport;2.58847886258136e-29!GO:0065003;macromolecular complex assembly;8.18822018012978e-29!GO:0019866;organelle inner membrane;8.68533545787354e-29!GO:0016070;RNA metabolic process;1.19822305528873e-28!GO:0000166;nucleotide binding;1.2796037549205e-28!GO:0031966;mitochondrial membrane;2.29566606562641e-28!GO:0005654;nucleoplasm;3.32162065884341e-27!GO:0005743;mitochondrial inner membrane;7.66931665403658e-27!GO:0022607;cellular component assembly;7.04058977132177e-25!GO:0031980;mitochondrial lumen;2.53513274037365e-24!GO:0005759;mitochondrial matrix;2.53513274037365e-24!GO:0005681;spliceosome;2.91962121740784e-24!GO:0044445;cytosolic part;4.67823390103106e-24!GO:0012505;endomembrane system;1.98609859381858e-23!GO:0005730;nucleolus;3.40568207135094e-23!GO:0044451;nucleoplasm part;1.06927021370635e-22!GO:0007049;cell cycle;2.98821829570884e-22!GO:0006457;protein folding;4.13821184940535e-22!GO:0015934;large ribosomal subunit;1.90037541446888e-21!GO:0015935;small ribosomal subunit;3.25388118382672e-21!GO:0044455;mitochondrial membrane part;1.08489367696588e-20!GO:0016874;ligase activity;1.14403090708281e-20!GO:0051649;establishment of cellular localization;1.18990467526964e-20!GO:0006119;oxidative phosphorylation;1.58018617828841e-20!GO:0051641;cellular localization;5.19161478092551e-20!GO:0017076;purine nucleotide binding;8.08929572537947e-20!GO:0032553;ribonucleotide binding;9.49630122130102e-20!GO:0032555;purine ribonucleotide binding;9.49630122130102e-20!GO:0044265;cellular macromolecule catabolic process;1.62255198695358e-19!GO:0005783;endoplasmic reticulum;2.78284662188331e-19!GO:0022618;protein-RNA complex assembly;1.24954117960275e-18!GO:0006974;response to DNA damage stimulus;4.2926263084597e-18!GO:0016462;pyrophosphatase activity;4.39828670506424e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.108949064184e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;8.30889626134846e-18!GO:0032559;adenyl ribonucleotide binding;9.90303403354427e-18!GO:0005524;ATP binding;1.04548702694386e-17!GO:0030554;adenyl nucleotide binding;1.36530395158703e-17!GO:0008135;translation factor activity, nucleic acid binding;2.07230589489047e-17!GO:0006512;ubiquitin cycle;2.08141647086444e-17!GO:0042254;ribosome biogenesis and assembly;4.22091699466555e-17!GO:0005794;Golgi apparatus;4.49729515971905e-17!GO:0017111;nucleoside-triphosphatase activity;5.57488427964301e-17!GO:0043285;biopolymer catabolic process;6.38475220560647e-17!GO:0044432;endoplasmic reticulum part;8.5286961112004e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.13589566920246e-17!GO:0005746;mitochondrial respiratory chain;1.0853476461589e-16!GO:0044248;cellular catabolic process;1.59024818894941e-16!GO:0008134;transcription factor binding;1.73664860516146e-16!GO:0019941;modification-dependent protein catabolic process;1.73664860516146e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.73664860516146e-16!GO:0009057;macromolecule catabolic process;3.32435906232453e-16!GO:0044257;cellular protein catabolic process;3.45401481746328e-16!GO:0006511;ubiquitin-dependent protein catabolic process;3.46590733629262e-16!GO:0043412;biopolymer modification;3.85622663934624e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.29023665267757e-16!GO:0048770;pigment granule;1.20683358898923e-15!GO:0042470;melanosome;1.20683358898923e-15!GO:0051082;unfolded protein binding;1.37007772899529e-15!GO:0005761;mitochondrial ribosome;1.54098753205316e-15!GO:0000313;organellar ribosome;1.54098753205316e-15!GO:0022402;cell cycle process;3.28078340477603e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.30186018019109e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.90065847745109e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.62864308083589e-15!GO:0003954;NADH dehydrogenase activity;4.62864308083589e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.62864308083589e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.35715235302197e-15!GO:0006605;protein targeting;6.55583010739328e-15!GO:0006281;DNA repair;9.3207774685767e-15!GO:0006399;tRNA metabolic process;3.90354882959912e-14!GO:0009719;response to endogenous stimulus;4.58286680015026e-14!GO:0051186;cofactor metabolic process;5.4626489056618e-14!GO:0051276;chromosome organization and biogenesis;7.94648688337631e-14!GO:0006464;protein modification process;8.77178680544951e-14!GO:0005694;chromosome;1.17562403203384e-13!GO:0031965;nuclear membrane;1.69972371027476e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.71534816958089e-13!GO:0000375;RNA splicing, via transesterification reactions;1.71534816958089e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.71534816958089e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.05069260260859e-13!GO:0042773;ATP synthesis coupled electron transport;2.05069260260859e-13!GO:0030163;protein catabolic process;2.3707470931149e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.55392069421394e-13!GO:0045271;respiratory chain complex I;4.55392069421394e-13!GO:0005747;mitochondrial respiratory chain complex I;4.55392069421394e-13!GO:0005635;nuclear envelope;7.47772678956105e-13!GO:0006366;transcription from RNA polymerase II promoter;9.43864878196933e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;9.94166999320582e-13!GO:0003743;translation initiation factor activity;1.06620743137142e-12!GO:0016887;ATPase activity;1.476059245555e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.5812122643658e-12!GO:0016072;rRNA metabolic process;2.07057670194659e-12!GO:0044453;nuclear membrane part;2.84522497286684e-12!GO:0000278;mitotic cell cycle;3.18257650688441e-12!GO:0016604;nuclear body;3.28549087559313e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.4065212410663e-12!GO:0005789;endoplasmic reticulum membrane;4.14642204656298e-12!GO:0006323;DNA packaging;4.17542231339556e-12!GO:0048193;Golgi vesicle transport;4.20309150225901e-12!GO:0042623;ATPase activity, coupled;5.25299050681232e-12!GO:0004386;helicase activity;5.49017995405353e-12!GO:0006260;DNA replication;5.78227805898568e-12!GO:0006413;translational initiation;7.90136330056855e-12!GO:0006364;rRNA processing;1.37868579765059e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.26732070659005e-11!GO:0006446;regulation of translational initiation;2.29617805038913e-11!GO:0006913;nucleocytoplasmic transport;2.35032847084021e-11!GO:0012501;programmed cell death;3.27187486294216e-11!GO:0051169;nuclear transport;3.73397522820925e-11!GO:0005643;nuclear pore;3.99848869845435e-11!GO:0006732;coenzyme metabolic process;4.43151346712381e-11!GO:0043687;post-translational protein modification;5.10352672424345e-11!GO:0044427;chromosomal part;5.27329123253563e-11!GO:0006915;apoptosis;6.09447361917736e-11!GO:0008026;ATP-dependent helicase activity;1.60211052582987e-10!GO:0009055;electron carrier activity;1.72271076865461e-10!GO:0003712;transcription cofactor activity;2.06103335838383e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.94281996403403e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.94281996403403e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.94281996403403e-10!GO:0016568;chromatin modification;3.2167484829663e-10!GO:0008219;cell death;5.12524708199819e-10!GO:0016265;death;5.12524708199819e-10!GO:0065002;intracellular protein transport across a membrane;5.87583821805877e-10!GO:0016740;transferase activity;5.90538519010304e-10!GO:0016192;vesicle-mediated transport;7.34480301226805e-10!GO:0006403;RNA localization;8.37380511003654e-10!GO:0050657;nucleic acid transport;9.73728266764328e-10!GO:0051236;establishment of RNA localization;9.73728266764328e-10!GO:0050658;RNA transport;9.73728266764328e-10!GO:0043038;amino acid activation;1.11418674834871e-09!GO:0006418;tRNA aminoacylation for protein translation;1.11418674834871e-09!GO:0043039;tRNA aminoacylation;1.11418674834871e-09!GO:0016607;nuclear speck;1.42236527613182e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.51909859142352e-09!GO:0050794;regulation of cellular process;2.61249497912998e-09!GO:0009056;catabolic process;3.1217743290214e-09!GO:0022403;cell cycle phase;3.77364939783767e-09!GO:0046930;pore complex;4.25561949859962e-09!GO:0007067;mitosis;4.8477825184512e-09!GO:0000087;M phase of mitotic cell cycle;4.90360530605438e-09!GO:0008565;protein transporter activity;5.85420806698472e-09!GO:0051726;regulation of cell cycle;6.32831018027912e-09!GO:0051301;cell division;9.04054212917548e-09!GO:0000074;regulation of progression through cell cycle;1.16373664909073e-08!GO:0017038;protein import;1.3293600718528e-08!GO:0051188;cofactor biosynthetic process;1.48169037319135e-08!GO:0007005;mitochondrion organization and biogenesis;1.56958865605442e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.58355762306451e-08!GO:0008639;small protein conjugating enzyme activity;1.63570741772581e-08!GO:0005768;endosome;1.94548731888338e-08!GO:0009060;aerobic respiration;2.61368831837214e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.63044532772232e-08!GO:0004842;ubiquitin-protein ligase activity;3.63044532772232e-08!GO:0044431;Golgi apparatus part;4.59390976542603e-08!GO:0032446;protein modification by small protein conjugation;4.77640013534296e-08!GO:0006461;protein complex assembly;5.05679881447246e-08!GO:0000785;chromatin;5.18617449328235e-08!GO:0019787;small conjugating protein ligase activity;6.07389302047089e-08!GO:0051028;mRNA transport;6.55203864836744e-08!GO:0016779;nucleotidyltransferase activity;7.63387028882758e-08!GO:0016567;protein ubiquitination;8.72926259816589e-08!GO:0006333;chromatin assembly or disassembly;8.77637252039664e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.46106719603106e-07!GO:0009259;ribonucleotide metabolic process;1.47431233930542e-07!GO:0045333;cellular respiration;1.50081083528544e-07!GO:0005793;ER-Golgi intermediate compartment;1.51484134488501e-07!GO:0019222;regulation of metabolic process;2.04684647430116e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.04684647430116e-07!GO:0000279;M phase;2.22228608854413e-07!GO:0016881;acid-amino acid ligase activity;2.2682769235835e-07!GO:0006163;purine nucleotide metabolic process;3.95624506789648e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.00978519998945e-07!GO:0000139;Golgi membrane;6.69503408076452e-07!GO:0065004;protein-DNA complex assembly;6.8803885509848e-07!GO:0016491;oxidoreductase activity;7.92233942351118e-07!GO:0019829;cation-transporting ATPase activity;9.18812975437527e-07!GO:0044440;endosomal part;9.26596729396303e-07!GO:0010008;endosome membrane;9.26596729396303e-07!GO:0009108;coenzyme biosynthetic process;9.94530609959189e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.01996900628866e-06!GO:0009150;purine ribonucleotide metabolic process;1.02116710411353e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.16074860030158e-06!GO:0016787;hydrolase activity;1.16074860030158e-06!GO:0015986;ATP synthesis coupled proton transport;1.16426303113896e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.16426303113896e-06!GO:0005667;transcription factor complex;1.22777542177943e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.39010805408314e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.43739257927487e-06!GO:0000245;spliceosome assembly;1.56152575406187e-06!GO:0030120;vesicle coat;1.71041651290335e-06!GO:0030662;coated vesicle membrane;1.71041651290335e-06!GO:0009260;ribonucleotide biosynthetic process;1.86284035390985e-06!GO:0005788;endoplasmic reticulum lumen;1.98624454426315e-06!GO:0006164;purine nucleotide biosynthetic process;2.34946001525623e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.43645993461836e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.43645993461836e-06!GO:0006793;phosphorus metabolic process;2.43645993461836e-06!GO:0006796;phosphate metabolic process;2.43645993461836e-06!GO:0009141;nucleoside triphosphate metabolic process;2.87098815502619e-06!GO:0048475;coated membrane;2.95522454342979e-06!GO:0030117;membrane coat;2.95522454342979e-06!GO:0051246;regulation of protein metabolic process;2.9978907319611e-06!GO:0005762;mitochondrial large ribosomal subunit;3.22817564300195e-06!GO:0000315;organellar large ribosomal subunit;3.22817564300195e-06!GO:0043566;structure-specific DNA binding;3.22817564300195e-06!GO:0043067;regulation of programmed cell death;3.56073587328542e-06!GO:0015630;microtubule cytoskeleton;3.65281396498612e-06!GO:0046034;ATP metabolic process;3.9590808225666e-06!GO:0042981;regulation of apoptosis;4.22696604921678e-06!GO:0003697;single-stranded DNA binding;4.36449610970303e-06!GO:0045259;proton-transporting ATP synthase complex;4.40749052060125e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.53086474777257e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.53086474777257e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.61121529907988e-06!GO:0003713;transcription coactivator activity;5.8135783776037e-06!GO:0009152;purine ribonucleotide biosynthetic process;5.91606067067776e-06!GO:0006261;DNA-dependent DNA replication;5.96435376647249e-06!GO:0008033;tRNA processing;6.08413470801342e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.82952976701063e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.82952976701063e-06!GO:0016563;transcription activator activity;9.08815214381903e-06!GO:0051170;nuclear import;9.53643876809092e-06!GO:0043623;cellular protein complex assembly;9.59489915237308e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.76229276712305e-06!GO:0006099;tricarboxylic acid cycle;1.00922388417763e-05!GO:0046356;acetyl-CoA catabolic process;1.00922388417763e-05!GO:0051427;hormone receptor binding;1.03374312594704e-05!GO:0006754;ATP biosynthetic process;1.05883947806651e-05!GO:0006753;nucleoside phosphate metabolic process;1.05883947806651e-05!GO:0006091;generation of precursor metabolites and energy;1.17355171594011e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.30031215126609e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.32006500739496e-05!GO:0000151;ubiquitin ligase complex;1.5849921200427e-05!GO:0031323;regulation of cellular metabolic process;1.67819753805885e-05!GO:0050662;coenzyme binding;1.70293849417202e-05!GO:0006606;protein import into nucleus;1.71673041048766e-05!GO:0003724;RNA helicase activity;1.93605121088967e-05!GO:0016853;isomerase activity;2.04209251452452e-05!GO:0031324;negative regulation of cellular metabolic process;2.23857125971093e-05!GO:0031988;membrane-bound vesicle;2.25603797392643e-05!GO:0035257;nuclear hormone receptor binding;2.29323958667691e-05!GO:0016564;transcription repressor activity;2.32316818875184e-05!GO:0016310;phosphorylation;2.50665951159788e-05!GO:0050789;regulation of biological process;2.77717845150351e-05!GO:0003899;DNA-directed RNA polymerase activity;2.82912872492749e-05!GO:0048523;negative regulation of cellular process;2.8958422122718e-05!GO:0009117;nucleotide metabolic process;3.05628255325969e-05!GO:0006084;acetyl-CoA metabolic process;3.12639854619307e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.15542956281433e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19378070356864e-05!GO:0006350;transcription;3.2470431653604e-05!GO:0004298;threonine endopeptidase activity;3.46432262507983e-05!GO:0043021;ribonucleoprotein binding;3.73910542250117e-05!GO:0006082;organic acid metabolic process;3.76023883310131e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.79459831103879e-05!GO:0019752;carboxylic acid metabolic process;4.02407403275746e-05!GO:0000314;organellar small ribosomal subunit;4.04782820951661e-05!GO:0005763;mitochondrial small ribosomal subunit;4.04782820951661e-05!GO:0006401;RNA catabolic process;4.16834347911619e-05!GO:0005770;late endosome;4.57006143374974e-05!GO:0006613;cotranslational protein targeting to membrane;4.67060847232256e-05!GO:0009109;coenzyme catabolic process;4.72708406819596e-05!GO:0044452;nucleolar part;4.75170278086522e-05!GO:0051168;nuclear export;4.87269519470981e-05!GO:0048037;cofactor binding;5.14724136590425e-05!GO:0009892;negative regulation of metabolic process;6.21501320972636e-05!GO:0016363;nuclear matrix;7.26884570298058e-05!GO:0016741;transferase activity, transferring one-carbon groups;8.57720494766572e-05!GO:0005813;centrosome;8.87006538831795e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.20668909015358e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.82702511436537e-05!GO:0051187;cofactor catabolic process;0.000100593789229748!GO:0006402;mRNA catabolic process;0.000100930930515104!GO:0006916;anti-apoptosis;0.000116091865136252!GO:0051789;response to protein stimulus;0.000122935379124164!GO:0006986;response to unfolded protein;0.000122935379124164!GO:0045454;cell redox homeostasis;0.000125012977228282!GO:0031072;heat shock protein binding;0.000129034617225363!GO:0005815;microtubule organizing center;0.000131162709115547!GO:0015980;energy derivation by oxidation of organic compounds;0.000131162709115547!GO:0008168;methyltransferase activity;0.00013136504528786!GO:0043069;negative regulation of programmed cell death;0.000134524930656695!GO:0005798;Golgi-associated vesicle;0.000143815431054012!GO:0006752;group transfer coenzyme metabolic process;0.000144436558463103!GO:0031982;vesicle;0.000148095379824048!GO:0051287;NAD binding;0.000150274925667459!GO:0005525;GTP binding;0.000154166194347352!GO:0016859;cis-trans isomerase activity;0.000162036258667651!GO:0000049;tRNA binding;0.000169618840733654!GO:0031497;chromatin assembly;0.00017255954114325!GO:0048471;perinuclear region of cytoplasm;0.000177148220693244!GO:0031410;cytoplasmic vesicle;0.000219371019701888!GO:0008654;phospholipid biosynthetic process;0.000221522938463111!GO:0003702;RNA polymerase II transcription factor activity;0.000227422968185455!GO:0010468;regulation of gene expression;0.000231141453615496!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000241123129443929!GO:0007264;small GTPase mediated signal transduction;0.00025694786824988!GO:0043066;negative regulation of apoptosis;0.000275478310195802!GO:0003714;transcription corepressor activity;0.000290697516388072!GO:0016481;negative regulation of transcription;0.000300472118263494!GO:0006520;amino acid metabolic process;0.000317638119913344!GO:0008186;RNA-dependent ATPase activity;0.000318652615313055!GO:0006414;translational elongation;0.000326848165700983!GO:0043681;protein import into mitochondrion;0.000331594757697966!GO:0006839;mitochondrial transport;0.000335051638153135!GO:0030867;rough endoplasmic reticulum membrane;0.000359948965461424!GO:0005769;early endosome;0.000376948935045312!GO:0004518;nuclease activity;0.000379604818201!GO:0045786;negative regulation of progression through cell cycle;0.000391131161591206!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000397709738736609!GO:0004576;oligosaccharyl transferase activity;0.000415322234582382!GO:0006334;nucleosome assembly;0.00043118602006565!GO:0003682;chromatin binding;0.000439383441202765!GO:0051252;regulation of RNA metabolic process;0.000488010747330201!GO:0003729;mRNA binding;0.000488010747330201!GO:0006302;double-strand break repair;0.000488077563180486!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000491854252825703!GO:0008094;DNA-dependent ATPase activity;0.00056392951395832!GO:0032774;RNA biosynthetic process;0.000576690472235373!GO:0048519;negative regulation of biological process;0.000619880850827783!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00062480753473708!GO:0006351;transcription, DNA-dependent;0.000639320674287519!GO:0005657;replication fork;0.000651003666439404!GO:0008250;oligosaccharyl transferase complex;0.000660980135178321!GO:0006626;protein targeting to mitochondrion;0.000815341438353589!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000815341438353589!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000828988306551357!GO:0005819;spindle;0.000856529251521039!GO:0004004;ATP-dependent RNA helicase activity;0.00088943094523452!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000893304359739529!GO:0019899;enzyme binding;0.0009067324551925!GO:0045941;positive regulation of transcription;0.000962161519329902!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102007195641306!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102007195641306!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102007195641306!GO:0051920;peroxiredoxin activity;0.00102007195641306!GO:0031968;organelle outer membrane;0.00103004090899759!GO:0003690;double-stranded DNA binding;0.00103151225365487!GO:0043488;regulation of mRNA stability;0.00103697270622887!GO:0043487;regulation of RNA stability;0.00103697270622887!GO:0005741;mitochondrial outer membrane;0.00104113202926592!GO:0007051;spindle organization and biogenesis;0.00105620889606476!GO:0033116;ER-Golgi intermediate compartment membrane;0.0010979504805448!GO:0008022;protein C-terminus binding;0.00111274221343801!GO:0005885;Arp2/3 protein complex;0.00112155424818016!GO:0003678;DNA helicase activity;0.00112855630879896!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00116971044172623!GO:0019867;outer membrane;0.0011935777290963!GO:0032561;guanyl ribonucleotide binding;0.00121490333395932!GO:0019001;guanyl nucleotide binding;0.00121490333395932!GO:0006612;protein targeting to membrane;0.00123727639016136!GO:0065009;regulation of a molecular function;0.00123773983638165!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00127908445186877!GO:0051329;interphase of mitotic cell cycle;0.00128930168918842!GO:0035258;steroid hormone receptor binding;0.00130162800069366!GO:0051052;regulation of DNA metabolic process;0.00151694037071663!GO:0045893;positive regulation of transcription, DNA-dependent;0.00165312604707071!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00174887614310738!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00175055557253902!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00183106940558315!GO:0008234;cysteine-type peptidase activity;0.0018523787769243!GO:0000059;protein import into nucleus, docking;0.00186637717778055!GO:0032508;DNA duplex unwinding;0.00189962599135747!GO:0032392;DNA geometric change;0.00189962599135747!GO:0006338;chromatin remodeling;0.00189962599135747!GO:0031252;leading edge;0.00189962599135747!GO:0003924;GTPase activity;0.00195628257784573!GO:0019843;rRNA binding;0.00200540955417711!GO:0007006;mitochondrial membrane organization and biogenesis;0.00202196411056015!GO:0051325;interphase;0.00215824983249722!GO:0006595;polyamine metabolic process;0.00215824983249722!GO:0005791;rough endoplasmic reticulum;0.0021945787437244!GO:0006352;transcription initiation;0.00237786825090641!GO:0004674;protein serine/threonine kinase activity;0.00244016667623098!GO:0016272;prefoldin complex;0.00244016667623098!GO:0018196;peptidyl-asparagine modification;0.00269647331824091!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00269647331824091!GO:0006891;intra-Golgi vesicle-mediated transport;0.00281602951408765!GO:0005048;signal sequence binding;0.00281888342243515!GO:0030658;transport vesicle membrane;0.00288918077413868!GO:0006611;protein export from nucleus;0.00295626887122467!GO:0030176;integral to endoplasmic reticulum membrane;0.00297153566919396!GO:0015631;tubulin binding;0.0030361657769976!GO:0001889;liver development;0.00303651241499207!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00320225605559066!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00321047109727896!GO:0015399;primary active transmembrane transporter activity;0.00321047109727896!GO:0000075;cell cycle checkpoint;0.00326156520070514!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00332815041218092!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00337005265543878!GO:0003746;translation elongation factor activity;0.00337305950125851!GO:0006519;amino acid and derivative metabolic process;0.00345838230344033!GO:0030118;clathrin coat;0.00357258930878685!GO:0008632;apoptotic program;0.00377555033640487!GO:0016251;general RNA polymerase II transcription factor activity;0.00385694135829021!GO:0004527;exonuclease activity;0.00392119254453478!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00401671032235645!GO:0006650;glycerophospholipid metabolic process;0.00407182652725325!GO:0004540;ribonuclease activity;0.00419313719924878!GO:0005773;vacuole;0.00423606001378871!GO:0048487;beta-tubulin binding;0.00423606001378871!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00425225446212337!GO:0015002;heme-copper terminal oxidase activity;0.00425225446212337!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00425225446212337!GO:0004129;cytochrome-c oxidase activity;0.00425225446212337!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00427195482558294!GO:0005874;microtubule;0.00435888644039551!GO:0044262;cellular carbohydrate metabolic process;0.00442877377510704!GO:0006268;DNA unwinding during replication;0.00447400619051623!GO:0005684;U2-dependent spliceosome;0.00489061003431863!GO:0048500;signal recognition particle;0.00512693373316107!GO:0046474;glycerophospholipid biosynthetic process;0.00512693373316107!GO:0045449;regulation of transcription;0.00512693373316107!GO:0030119;AP-type membrane coat adaptor complex;0.00533554796092006!GO:0009451;RNA modification;0.00549004515487787!GO:0008652;amino acid biosynthetic process;0.00550498836148383!GO:0009165;nucleotide biosynthetic process;0.00552141681348357!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00557235224797329!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00557235224797329!GO:0006730;one-carbon compound metabolic process;0.00557235224797329!GO:0042770;DNA damage response, signal transduction;0.00557235224797329!GO:0030145;manganese ion binding;0.00557235224797329!GO:0000775;chromosome, pericentric region;0.00564583017562913!GO:0008139;nuclear localization sequence binding;0.00586477783574309!GO:0006405;RNA export from nucleus;0.00638854210038469!GO:0004680;casein kinase activity;0.00647465043443536!GO:0030663;COPI coated vesicle membrane;0.00649175206772284!GO:0030126;COPI vesicle coat;0.00649175206772284!GO:0043414;biopolymer methylation;0.00676231827658291!GO:0005758;mitochondrial intermembrane space;0.00681584030788688!GO:0008287;protein serine/threonine phosphatase complex;0.00682361842129025!GO:0000792;heterochromatin;0.00689936924048875!GO:0005637;nuclear inner membrane;0.00695663701111928!GO:0019318;hexose metabolic process;0.00703068616897296!GO:0043022;ribosome binding;0.00744341708102878!GO:0030131;clathrin adaptor complex;0.0075715795210567!GO:0005996;monosaccharide metabolic process;0.00760993130176683!GO:0005905;coated pit;0.00770329323851277!GO:0006289;nucleotide-excision repair;0.00787593507270643!GO:0051087;chaperone binding;0.00787804659466019!GO:0000096;sulfur amino acid metabolic process;0.00793697880504245!GO:0022890;inorganic cation transmembrane transporter activity;0.00796242797449793!GO:0000178;exosome (RNase complex);0.00796602559826537!GO:0032259;methylation;0.0080015014238186!GO:0030521;androgen receptor signaling pathway;0.00803739252171854!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00804379431334687!GO:0030660;Golgi-associated vesicle membrane;0.00808158925756516!GO:0009303;rRNA transcription;0.00812244604858471!GO:0008637;apoptotic mitochondrial changes;0.00830855923188913!GO:0046489;phosphoinositide biosynthetic process;0.00846215627207908!GO:0048522;positive regulation of cellular process;0.00851616871424892!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00881103530173876!GO:0006383;transcription from RNA polymerase III promoter;0.00934590027259634!GO:0004532;exoribonuclease activity;0.00949047887431066!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00949047887431066!GO:0008312;7S RNA binding;0.00949091541604285!GO:0005832;chaperonin-containing T-complex;0.0095840239969929!GO:0006310;DNA recombination;0.00981811715225862!GO:0006376;mRNA splice site selection;0.00981811715225862!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00981811715225862!GO:0030133;transport vesicle;0.00988714440618484!GO:0009116;nucleoside metabolic process;0.00997814177661118!GO:0042802;identical protein binding;0.00997814177661118!GO:0030659;cytoplasmic vesicle membrane;0.0102574925747483!GO:0003711;transcription elongation regulator activity;0.0102639556574408!GO:0030384;phosphoinositide metabolic process;0.0103025317532645!GO:0000323;lytic vacuole;0.0103777670119135!GO:0005764;lysosome;0.0103777670119135!GO:0045892;negative regulation of transcription, DNA-dependent;0.0104444304336976!GO:0043284;biopolymer biosynthetic process;0.0105163995918663!GO:0030880;RNA polymerase complex;0.0105696799480718!GO:0003684;damaged DNA binding;0.0106184186373942!GO:0008017;microtubule binding;0.0109248253955562!GO:0040029;regulation of gene expression, epigenetic;0.0111830799517594!GO:0043189;H4/H2A histone acetyltransferase complex;0.0112698148554763!GO:0007088;regulation of mitosis;0.01135050304283!GO:0007017;microtubule-based process;0.0113535428116393!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0117093794750189!GO:0015992;proton transport;0.0117848568822688!GO:0006818;hydrogen transport;0.0124249709065903!GO:0031970;organelle envelope lumen;0.0125771957476968!GO:0006118;electron transport;0.0125771957476968!GO:0007243;protein kinase cascade;0.0126238960517029!GO:0007052;mitotic spindle organization and biogenesis;0.0126449247853082!GO:0006417;regulation of translation;0.0127013622524122!GO:0008276;protein methyltransferase activity;0.0127797133223112!GO:0000287;magnesium ion binding;0.0129292898835062!GO:0030134;ER to Golgi transport vesicle;0.0134455653552665!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0135379983355076!GO:0035267;NuA4 histone acetyltransferase complex;0.0136840468679493!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0136840468679493!GO:0030137;COPI-coated vesicle;0.0137492567703595!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.013835530455893!GO:0045047;protein targeting to ER;0.013835530455893!GO:0030127;COPII vesicle coat;0.0143331572398968!GO:0012507;ER to Golgi transport vesicle membrane;0.0143331572398968!GO:0048146;positive regulation of fibroblast proliferation;0.0143965747522272!GO:0016301;kinase activity;0.0145066376520174!GO:0006984;ER-nuclear signaling pathway;0.0146052633001335!GO:0031902;late endosome membrane;0.0146769488671099!GO:0006400;tRNA modification;0.0149318347087159!GO:0046483;heterocycle metabolic process;0.015474284477494!GO:0008629;induction of apoptosis by intracellular signals;0.0157851238959883!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.016130445420495!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.016164443579581!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0163346401487863!GO:0006355;regulation of transcription, DNA-dependent;0.0163545692629089!GO:0051338;regulation of transferase activity;0.0167105306826204!GO:0043492;ATPase activity, coupled to movement of substances;0.0172384129365304!GO:0031625;ubiquitin protein ligase binding;0.017500525544032!GO:0000776;kinetochore;0.017500525544032!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0175213002056221!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0175213002056221!GO:0051101;regulation of DNA binding;0.0175213002056221!GO:0004003;ATP-dependent DNA helicase activity;0.0176799565712714!GO:0006275;regulation of DNA replication;0.0177693078709849!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0179736759968178!GO:0048144;fibroblast proliferation;0.0179736759968178!GO:0048145;regulation of fibroblast proliferation;0.0179736759968178!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0179736759968178!GO:0000428;DNA-directed RNA polymerase complex;0.0179736759968178!GO:0000086;G2/M transition of mitotic cell cycle;0.0181814710191976!GO:0065007;biological regulation;0.0183322159164253!GO:0046983;protein dimerization activity;0.0186913551866297!GO:0050790;regulation of catalytic activity;0.0187307295151946!GO:0006354;RNA elongation;0.0193287966976182!GO:0006733;oxidoreduction coenzyme metabolic process;0.019606937001308!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0198892668104287!GO:0044433;cytoplasmic vesicle part;0.0198892668104287!GO:0016197;endosome transport;0.0200990531398118!GO:0006892;post-Golgi vesicle-mediated transport;0.0203739974046357!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0205648127587834!GO:0004722;protein serine/threonine phosphatase activity;0.020669790757107!GO:0000123;histone acetyltransferase complex;0.020669790757107!GO:0031901;early endosome membrane;0.0206980181089561!GO:0033673;negative regulation of kinase activity;0.0210172332227992!GO:0006469;negative regulation of protein kinase activity;0.0210172332227992!GO:0016584;nucleosome positioning;0.0211197664839761!GO:0008361;regulation of cell size;0.0211197664839761!GO:0006596;polyamine biosynthetic process;0.0215936252825544!GO:0001558;regulation of cell growth;0.0217324402770121!GO:0008601;protein phosphatase type 2A regulator activity;0.0217620356475168!GO:0006506;GPI anchor biosynthetic process;0.0229962496182338!GO:0008538;proteasome activator activity;0.023294459176283!GO:0012506;vesicle membrane;0.0233709167609882!GO:0046966;thyroid hormone receptor binding;0.0235336950963528!GO:0003677;DNA binding;0.0235336950963528!GO:0046467;membrane lipid biosynthetic process;0.0235336950963528!GO:0007030;Golgi organization and biogenesis;0.0235680929113962!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0235894985951751!GO:0008180;signalosome;0.0236976467689483!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0238049778169621!GO:0043549;regulation of kinase activity;0.0238066280566262!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0238911391541416!GO:0005669;transcription factor TFIID complex;0.0240888707795475!GO:0031529;ruffle organization and biogenesis;0.0242706802775952!GO:0017134;fibroblast growth factor binding;0.0243263047030526!GO:0007265;Ras protein signal transduction;0.0246486619743934!GO:0006458;'de novo' protein folding;0.0246486619743934!GO:0051084;'de novo' posttranslational protein folding;0.0246486619743934!GO:0016790;thiolester hydrolase activity;0.0246510409467767!GO:0007010;cytoskeleton organization and biogenesis;0.0246644660128483!GO:0031124;mRNA 3'-end processing;0.0253674867617141!GO:0016615;malate dehydrogenase activity;0.0253674867617141!GO:0019783;small conjugating protein-specific protease activity;0.0260091911276693!GO:0030125;clathrin vesicle coat;0.0260605063344168!GO:0030665;clathrin coated vesicle membrane;0.0260605063344168!GO:0030132;clathrin coat of coated pit;0.0263908679866304!GO:0008408;3'-5' exonuclease activity;0.0264111999197684!GO:0030503;regulation of cell redox homeostasis;0.0264111999197684!GO:0006779;porphyrin biosynthetic process;0.0264352890733951!GO:0033014;tetrapyrrole biosynthetic process;0.0264352890733951!GO:0016049;cell growth;0.0275293850511758!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0275293850511758!GO:0010257;NADH dehydrogenase complex assembly;0.0275293850511758!GO:0033108;mitochondrial respiratory chain complex assembly;0.0275293850511758!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0280903629946284!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0288725027314977!GO:0006505;GPI anchor metabolic process;0.029571710758096!GO:0006144;purine base metabolic process;0.0295884942720341!GO:0006740;NADPH regeneration;0.0304619185734735!GO:0006098;pentose-phosphate shunt;0.0304619185734735!GO:0000209;protein polyubiquitination;0.0305194767701329!GO:0043596;nuclear replication fork;0.0314513880135172!GO:0006066;alcohol metabolic process;0.0314557254578033!GO:0008610;lipid biosynthetic process;0.0315081605270857!GO:0008092;cytoskeletal protein binding;0.031715709923604!GO:0006767;water-soluble vitamin metabolic process;0.0320124719786825!GO:0006672;ceramide metabolic process;0.0322716981274714!GO:0051348;negative regulation of transferase activity;0.0322716981274714!GO:0005095;GTPase inhibitor activity;0.0324625217313513!GO:0006769;nicotinamide metabolic process;0.0329087229145079!GO:0042393;histone binding;0.0331347022841279!GO:0031326;regulation of cellular biosynthetic process;0.0335013599829275!GO:0006497;protein amino acid lipidation;0.0336157195968026!GO:0004843;ubiquitin-specific protease activity;0.0336189119723426!GO:0017166;vinculin binding;0.033687740352573!GO:0050681;androgen receptor binding;0.0343619679323372!GO:0022415;viral reproductive process;0.0347227194670807!GO:0006778;porphyrin metabolic process;0.0348677666087572!GO:0033013;tetrapyrrole metabolic process;0.0348677666087572!GO:0000097;sulfur amino acid biosynthetic process;0.0350408545635513!GO:0000175;3'-5'-exoribonuclease activity;0.0350454521705292!GO:0005784;translocon complex;0.0350621088955464!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0351514683077399!GO:0008213;protein amino acid alkylation;0.0351514683077399!GO:0006479;protein amino acid methylation;0.0351514683077399!GO:0001836;release of cytochrome c from mitochondria;0.0355660467724517!GO:0006807;nitrogen compound metabolic process;0.0355692708341976!GO:0051128;regulation of cellular component organization and biogenesis;0.0362246899337023!GO:0042769;DNA damage response, detection of DNA damage;0.0365951706617485!GO:0048012;hepatocyte growth factor receptor signaling pathway;0.0365951706617485!GO:0005008;hepatocyte growth factor receptor activity;0.0365951706617485!GO:0051450;myoblast proliferation;0.0365951706617485!GO:0003756;protein disulfide isomerase activity;0.0366357914692899!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0366357914692899!GO:0032200;telomere organization and biogenesis;0.0367027622391434!GO:0000723;telomere maintenance;0.0367027622391434!GO:0000159;protein phosphatase type 2A complex;0.0368874000911548!GO:0016791;phosphoric monoester hydrolase activity;0.0370500450267943!GO:0045045;secretory pathway;0.0371023698590815!GO:0000339;RNA cap binding;0.0371854905819371!GO:0016126;sterol biosynthetic process;0.0374121968895287!GO:0006270;DNA replication initiation;0.0379106246272287!GO:0043407;negative regulation of MAP kinase activity;0.0379941583668943!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.038394064252981!GO:0009112;nucleobase metabolic process;0.0385238208518575!GO:0030518;steroid hormone receptor signaling pathway;0.0387455827535859!GO:0045859;regulation of protein kinase activity;0.0387455827535859!GO:0046519;sphingoid metabolic process;0.0391869352895055!GO:0043065;positive regulation of apoptosis;0.0394584459005945!GO:0042147;retrograde transport, endosome to Golgi;0.0396074950956862!GO:0006783;heme biosynthetic process;0.0399365083041624!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0399976182530736!GO:0009308;amine metabolic process;0.0400805128443976!GO:0004526;ribonuclease P activity;0.0404146371280192!GO:0005938;cell cortex;0.0408780946721721!GO:0009070;serine family amino acid biosynthetic process;0.041891769445772!GO:0006695;cholesterol biosynthetic process;0.0424540595780208!GO:0006516;glycoprotein catabolic process;0.0425035415009176!GO:0044438;microbody part;0.0425035415009176!GO:0044439;peroxisomal part;0.0425035415009176!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0425457357997906!GO:0016044;membrane organization and biogenesis;0.0425843172146559!GO:0009119;ribonucleoside metabolic process;0.0428599771632225!GO:0005876;spindle microtubule;0.0437239011555397!GO:0004197;cysteine-type endopeptidase activity;0.0446932128246865!GO:0035035;histone acetyltransferase binding;0.0461189773998029!GO:0043068;positive regulation of programmed cell death;0.0462962526481962!GO:0008097;5S rRNA binding;0.0462962526481962!GO:0006378;mRNA polyadenylation;0.0467473761210504!GO:0016311;dephosphorylation;0.0473528659944863!GO:0030027;lamellipodium;0.0483494582056014!GO:0004549;tRNA-specific ribonuclease activity;0.0492031007110386!GO:0051539;4 iron, 4 sulfur cluster binding;0.049297680820542!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0494169462713254!GO:0030433;ER-associated protein catabolic process;0.0494904145280526!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0494904145280526!GO:0051085;chaperone cofactor-dependent protein folding;0.0494946394460627!GO:0004177;aminopeptidase activity;0.0495849700494094!GO:0000786;nucleosome;0.0495880552151816!GO:0000228;nuclear chromosome;0.0496450663295896!GO:0006564;L-serine biosynthetic process;0.0497685700435063!GO:0006108;malate metabolic process;0.0497762913903921!GO:0004221;ubiquitin thiolesterase activity;0.0497762913903921!GO:0004682;protein kinase CK2 activity;0.0498354947068624!GO:0009225;nucleotide-sugar metabolic process;0.0499068889547388!GO:0004448;isocitrate dehydrogenase activity;0.0499690672990871
|sample_id=10612
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=HOX{A6,A7,B6,B7}:2.56850701599;SNAI1..3:2.28290723722;ZEB1:2.14140224788;HNF1A:1.89448765008;MYOD1:1.48453577939;VSX1,2:1.43498735317;POU2F1..3:1.28271157387;bHLH_family:1.25115933962;LMO2:1.21808273848;ADNP_IRX_SIX_ZHX:1.10429417205;FOX{I1,J2}:1.06690900386;ZBTB16:1.06122270307;HNF4A_NR2F1,2:1.05269400691;ONECUT1,2:0.883918582342;POU6F1:0.821919784506;FOXN1:0.792127180071;FOXQ1:0.751053915044;TP53:0.748443295864;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.686743757509;FOXA2:0.685187625108;ELK1,4_GABP{A,B1}:0.676359867018;PBX1:0.668364869113;FOXD3:0.664110885244;BREu{core}:0.626904210746;RFX1:0.559544861133;XCPE1{core}:0.552183289151;RBPJ:0.502854871832;NFY{A,B,C}:0.49978104623;STAT5{A,B}:0.495384887037;RFX2..5_RFXANK_RFXAP:0.472728074245;NANOG:0.472287269119;YY1:0.46890766495;ZNF148:0.455006449608;NKX2-1,4:0.425120881171;TEF:0.42245403627;SOX2:0.399058209127;NR6A1:0.394086707322;HSF1,2:0.393065488366;MYB:0.367004634419;NR5A1,2:0.366538268228;EP300:0.359164539453;CDX1,2,4:0.355789266122;NKX2-3_NKX2-5:0.346682553571;TFAP2{A,C}:0.336348644349;IKZF2:0.33601973248;ATF4:0.327885954393;CUX2:0.318499306198;SOX{8,9,10}:0.316698509138;ZNF143:0.316274482987;CDC5L:0.302234663934;CRX:0.270073015735;PAX4:0.266998921973;LHX3,4:0.249122924504;AIRE:0.242149218161;T:0.238498159546;E2F1..5:0.234542495651;NKX3-2:0.229403964596;OCT4_SOX2{dimer}:0.227438528942;PAX8:0.206872243436;TFAP2B:0.200961815335;MTE{core}:0.195730841929;PITX1..3:0.193975361724;MTF1:0.173933603407;EN1,2:0.161396023765;POU5F1:0.152285640727;PRRX1,2:0.125204540647;ESRRA:0.107288141035;PDX1:0.103583507783;AHR_ARNT_ARNT2:0.102507166503;TOPORS:0.101574954491;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.090311987434;ZNF384:0.0634695616154;HIC1:0.0560117974057;FOX{D1,D2}:0.0285887243489;HLF:0.0145438367826;FOX{F1,F2,J1}:0.0081968614289;GATA6:-0.00114560891294;CEBPA,B_DDIT3:-0.00321602148782;RXRA_VDR{dimer}:-0.0196169415586;NKX3-1:-0.0205543522852;LEF1_TCF7_TCF7L1,2:-0.0229398886518;NRF1:-0.0434269511203;SP1:-0.0548365598902;IKZF1:-0.0686241203213;TFDP1:-0.0712599730246;DBP:-0.0806918721721;GTF2A1,2:-0.0899351244556;FOS_FOS{B,L1}_JUN{B,D}:-0.0973624119349;REST:-0.108365216661;ARID5B:-0.120319721332;PAX2:-0.123873320306;EVI1:-0.129645865603;HOX{A5,B5}:-0.161295093298;ZFP161:-0.168132290422;FOSL2:-0.202035844748;NKX6-1,2:-0.207195302908;ESR1:-0.214749206663;ATF5_CREB3:-0.215739561768;ZIC1..3:-0.223982177786;SOX17:-0.2248983276;STAT1,3:-0.229794390033;FOXO1,3,4:-0.232297872679;ALX1:-0.24464857159;NFE2:-0.248119101164;IRF7:-0.252180356216;TBP:-0.252793742012;FOXP1:-0.253098915557;BPTF:-0.263961454061;EBF1:-0.264559593406;GFI1:-0.27223705952;MED-1{core}:-0.288328693867;TFCP2:-0.292770218177;BACH2:-0.306454261749;MEF2{A,B,C,D}:-0.312511128912;FOXM1:-0.341698859695;UFEwm:-0.359597311838;HIF1A:-0.377420382481;NFIX:-0.380760871046;ELF1,2,4:-0.385422648096;HBP1_HMGB_SSRP1_UBTF:-0.40091823701;ATF2:-0.404459270658;TEAD1:-0.406171251703;ATF6:-0.409511889522;FOXP3:-0.414682208486;PATZ1:-0.428229259325;PAX6:-0.448939071507;NFKB1_REL_RELA:-0.450850504146;PPARG:-0.453569598511;NR3C1:-0.453773489328;ZBTB6:-0.465537787683;POU1F1:-0.495670121581;DMAP1_NCOR{1,2}_SMARC:-0.532953719859;TLX1..3_NFIC{dimer}:-0.541561273934;FOXL1:-0.547670702881;HOX{A4,D4}:-0.554334191519;KLF4:-0.556786189417;TAL1_TCF{3,4,12}:-0.574193610049;SPZ1:-0.575662353226;SPIB:-0.577491454354;AR:-0.600019496459;RREB1:-0.602672261157;SOX5:-0.604334248369;NFIL3:-0.605255331245;HAND1,2:-0.62269417018;SPI1:-0.623878884996;GTF2I:-0.63364184302;TBX4,5:-0.651250928671;JUN:-0.667151254511;ETS1,2:-0.675490163506;NR1H4:-0.683808589211;TLX2:-0.683942539004;ZNF238:-0.688158354734;IRF1,2:-0.688181213295;EGR1..3:-0.693393631529;RUNX1..3:-0.701139965603;CREB1:-0.715514960382;ZNF423:-0.716069419629;GLI1..3:-0.742732779373;MZF1:-0.754580873997;PRDM1:-0.773776935494;PAX3,7:-0.77395308465;XBP1:-0.782914489266;MAZ:-0.78484130032;NFE2L2:-0.791481843371;POU3F1..4:-0.804142260274;ALX4:-0.834274421786;RORA:-0.836377494691;MYBL2:-0.837047134579;STAT2,4,6:-0.837222722183;HMGA1,2:-0.859735491819;GFI1B:-0.86315346122;PAX1,9:-0.864144418354;HOXA9_MEIS1:-0.912339925001;MYFfamily:-0.97187269515;NHLH1,2:-0.981216371302;GATA4:-0.994966502067;SREBF1,2:-1.00001656495;GZF1:-1.03199526179;MAFB:-1.03266293662;NKX2-2,8:-1.05668021869;PAX5:-1.07479015681;HES1:-1.10432649973;TGIF1:-1.18096175574;SMAD1..7,9:-1.24353264606;GCM1,2:-1.32592053298;SRF:-1.33358653636;NANOG{mouse}:-1.35079096166;TFAP4:-1.41047895678;NFATC1..3:-1.47425258812;RXR{A,B,G}:-1.93068798396;NFE2L1:-2.00149616786;HMX1:-2.20241824073
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10612-108F9;search_select_hide=table117:FF:10612-108F9
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:gastric adenocarcinoma cell line:MKN45
Species:Human (Homo sapiens)
Library ID:CNhs11819
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexfemale
age62
cell typeunclassifiable
cell lineMKN45
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004903
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11819 CAGE DRX007891 DRR008763
Accession ID Hg19

Library idBAMCTSS
CNhs11819 DRZ000188 DRZ001573
Accession ID Hg38

Library idBAMCTSS
CNhs11819 DRZ011538 DRZ012923
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.198
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0248
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.019
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0376
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0293
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.361
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0227
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth6.502753e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.17
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11819

Jaspar motifP-value
MA0002.20.00694
MA0003.10.795
MA0004.10.172
MA0006.10.945
MA0007.10.556
MA0009.10.054
MA0014.10.155
MA0017.10.0182
MA0018.20.124
MA0019.10.266
MA0024.10.0288
MA0025.10.738
MA0027.10.871
MA0028.10.00483
MA0029.10.484
MA0030.10.111
MA0031.10.399
MA0035.20.0311
MA0038.10.613
MA0039.20.0179
MA0040.10.0619
MA0041.10.716
MA0042.10.884
MA0043.10.805
MA0046.15.09572e-44
MA0047.23.94618e-4
MA0048.10.406
MA0050.12.50539e-4
MA0051.10.0762
MA0052.10.00946
MA0055.17.0056e-4
MA0057.10.251
MA0058.10.547
MA0059.10.0721
MA0060.11.1736e-4
MA0061.11.88946e-4
MA0062.20.00596
MA0065.20.00379
MA0066.10.0272
MA0067.10.143
MA0068.10.0485
MA0069.10.621
MA0070.10.418
MA0071.10.749
MA0072.10.744
MA0073.10.606
MA0074.10.772
MA0076.10.00811
MA0077.10.958
MA0078.10.437
MA0079.20.361
MA0080.24.78075e-7
MA0081.10.00373
MA0083.14.15842e-4
MA0084.10.0488
MA0087.10.163
MA0088.10.324
MA0090.10.04
MA0091.10.0233
MA0092.10.0351
MA0093.10.24
MA0099.24.29242e-4
MA0100.10.532
MA0101.10.00894
MA0102.20.529
MA0103.13.66933e-9
MA0104.20.00347
MA0105.12.5936e-5
MA0106.10.0409
MA0107.19.13758e-4
MA0108.24.64345e-4
MA0111.10.805
MA0112.20.0995
MA0113.10.208
MA0114.11.56083e-5
MA0115.10.118
MA0116.10.0471
MA0117.10.159
MA0119.10.257
MA0122.10.32
MA0124.10.619
MA0125.10.46
MA0131.10.518
MA0135.10.432
MA0136.14.36734e-5
MA0137.20.216
MA0138.20.268
MA0139.10.0224
MA0140.10.771
MA0141.10.743
MA0142.10.499
MA0143.10.319
MA0144.10.112
MA0145.10.407
MA0146.10.688
MA0147.10.0031
MA0148.16.83192e-5
MA0149.10.0593
MA0150.10.0111
MA0152.10.28
MA0153.11.95592e-26
MA0154.10.0198
MA0155.10.239
MA0156.10.0243
MA0157.10.999
MA0159.10.585
MA0160.10.496
MA0162.10.834
MA0163.10.627
MA0164.10.0457
MA0258.10.287
MA0259.10.115



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11819

Novel motifP-value
10.868
100.499
1000.473
1010.443
1020.775
1030.544
1040.887
1050.565
1060.912
1070.976
1080.435
1090.54
110.434
1100.289
1110.838
1120.124
1130.012
1140.79
1150.53
1160.263
1170.748
1180.836
1190.743
120.599
1200.484
1210.475
1220.084
1230.963
1240.84
1250.107
1260.3
1270.434
1280.674
1290.4
130.00522
1300.0608
1310.158
1320.349
1330.00651
1340.598
1350.0557
1360.062
1370.407
1380.319
1390.0501
140.919
1400.717
1410.294
1420.754
1430.0452
1440.334
1450.413
1460.747
1470.891
1480.633
1490.531
150.944
1500.831
1510.927
1520.568
1530.996
1540.743
1550.767
1560.665
1570.222
1580.506
1590.545
160.663
1600.58
1610.978
1620.649
1630.801
1640.599
1650.448
1660.643
1670.775
1680.682
1690.521
170.735
180.193
190.0587
20.375
200.238
210.649
220.478
230.0592
240.456
250.828
260.106
270.856
280.784
290.482
30.305
300.84
310.544
320.0312
330.593
340.585
350.53
360.424
370.648
380.995
390.658
40.431
400.532
410.00767
420.934
430.16
440.795
450.978
460.931
470.785
480.853
490.299
50.269
500.416
510.472
520.54
530.386
540.393
550.621
560.881
570.903
580.777
590.304
60.575
600.742
610.263
620.226
630.522
640.827
650.429
660.0397
670.514
680.0536
690.513
70.464
700.487
710.662
720.402
730.419
740.184
750.359
760.498
770.367
780.321
790.348
80.896
800.239
810.209
820.0767
830.595
840.778
850.0766
860.49
870.214
880.869
890.145
90.054
900.666
910.0843
920.491
930.771
940.0762
950.199
960.0568
970.85
980.763
990.59



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11819


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0101225 (MKN-45 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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