FF:10612-108F9: Difference between revisions

Latest revision as of 14:31, 3 June 2020

Name:	gastric adenocarcinoma cell line:MKN45
Species:	Human (Homo sapiens)
Library ID:	CNhs11819
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	stomach
dev stage	NA
sex	female
age	62
cell type	unclassifiable
cell line	MKN45
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004903

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11819		CAGE		DRX007891		DRR008763

Accession ID Hg19

Library id		BAM		CTSS
CNhs11819		DRZ000188		DRZ001573

Accession ID Hg38

Library id		BAM		CTSS
CNhs11819		DRZ011538		DRZ012923

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.198
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0248
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.019
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0376
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0293
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.361
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0227
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	6.502753e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.17
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11819

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00694
MA0003.1	MA0003.1	0.795
MA0004.1	MA0004.1	0.172
MA0006.1	MA0006.1	0.945
MA0007.1	MA0007.1	0.556
MA0009.1	MA0009.1	0.054
MA0014.1	MA0014.1	0.155
MA0017.1	MA0017.1	0.0182
MA0018.2	MA0018.2	0.124
MA0019.1	MA0019.1	0.266
MA0024.1	MA0024.1	0.0288
MA0025.1	MA0025.1	0.738
MA0027.1	MA0027.1	0.871
MA0028.1	MA0028.1	0.00483
MA0029.1	MA0029.1	0.484
MA0030.1	MA0030.1	0.111
MA0031.1	MA0031.1	0.399
MA0035.2	MA0035.2	0.0311
MA0038.1	MA0038.1	0.613
MA0039.2	MA0039.2	0.0179
MA0040.1	MA0040.1	0.0619
MA0041.1	MA0041.1	0.716
MA0042.1	MA0042.1	0.884
MA0043.1	MA0043.1	0.805
MA0046.1	MA0046.1	5.09572e-44
MA0047.2	MA0047.2	3.94618e-4
MA0048.1	MA0048.1	0.406
MA0050.1	MA0050.1	2.50539e-4
MA0051.1	MA0051.1	0.0762
MA0052.1	MA0052.1	0.00946
MA0055.1	MA0055.1	7.0056e-4
MA0057.1	MA0057.1	0.251
MA0058.1	MA0058.1	0.547
MA0059.1	MA0059.1	0.0721
MA0060.1	MA0060.1	1.1736e-4
MA0061.1	MA0061.1	1.88946e-4
MA0062.2	MA0062.2	0.00596
MA0065.2	MA0065.2	0.00379
MA0066.1	MA0066.1	0.0272
MA0067.1	MA0067.1	0.143
MA0068.1	MA0068.1	0.0485
MA0069.1	MA0069.1	0.621
MA0070.1	MA0070.1	0.418
MA0071.1	MA0071.1	0.749
MA0072.1	MA0072.1	0.744
MA0073.1	MA0073.1	0.606
MA0074.1	MA0074.1	0.772
MA0076.1	MA0076.1	0.00811
MA0077.1	MA0077.1	0.958
MA0078.1	MA0078.1	0.437
MA0079.2	MA0079.2	0.361
MA0080.2	MA0080.2	4.78075e-7
MA0081.1	MA0081.1	0.00373
MA0083.1	MA0083.1	4.15842e-4
MA0084.1	MA0084.1	0.0488
MA0087.1	MA0087.1	0.163
MA0088.1	MA0088.1	0.324
MA0090.1	MA0090.1	0.04
MA0091.1	MA0091.1	0.0233
MA0092.1	MA0092.1	0.0351
MA0093.1	MA0093.1	0.24
MA0099.2	MA0099.2	4.29242e-4
MA0100.1	MA0100.1	0.532
MA0101.1	MA0101.1	0.00894
MA0102.2	MA0102.2	0.529
MA0103.1	MA0103.1	3.66933e-9
MA0104.2	MA0104.2	0.00347
MA0105.1	MA0105.1	2.5936e-5
MA0106.1	MA0106.1	0.0409
MA0107.1	MA0107.1	9.13758e-4
MA0108.2	MA0108.2	4.64345e-4
MA0111.1	MA0111.1	0.805
MA0112.2	MA0112.2	0.0995
MA0113.1	MA0113.1	0.208
MA0114.1	MA0114.1	1.56083e-5
MA0115.1	MA0115.1	0.118
MA0116.1	MA0116.1	0.0471
MA0117.1	MA0117.1	0.159
MA0119.1	MA0119.1	0.257
MA0122.1	MA0122.1	0.32
MA0124.1	MA0124.1	0.619
MA0125.1	MA0125.1	0.46
MA0131.1	MA0131.1	0.518
MA0135.1	MA0135.1	0.432
MA0136.1	MA0136.1	4.36734e-5
MA0137.2	MA0137.2	0.216
MA0138.2	MA0138.2	0.268
MA0139.1	MA0139.1	0.0224
MA0140.1	MA0140.1	0.771
MA0141.1	MA0141.1	0.743
MA0142.1	MA0142.1	0.499
MA0143.1	MA0143.1	0.319
MA0144.1	MA0144.1	0.112
MA0145.1	MA0145.1	0.407
MA0146.1	MA0146.1	0.688
MA0147.1	MA0147.1	0.0031
MA0148.1	MA0148.1	6.83192e-5
MA0149.1	MA0149.1	0.0593
MA0150.1	MA0150.1	0.0111
MA0152.1	MA0152.1	0.28
MA0153.1	MA0153.1	1.95592e-26
MA0154.1	MA0154.1	0.0198
MA0155.1	MA0155.1	0.239
MA0156.1	MA0156.1	0.0243
MA0157.1	MA0157.1	0.999
MA0159.1	MA0159.1	0.585
MA0160.1	MA0160.1	0.496
MA0162.1	MA0162.1	0.834
MA0163.1	MA0163.1	0.627
MA0164.1	MA0164.1	0.0457
MA0258.1	MA0258.1	0.287
MA0259.1	MA0259.1	0.115

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11819

Novel motif	Logo	P-value
1	1	0.868
10	10	0.499
100	100	0.473
101	101	0.443
102	102	0.775
103	103	0.544
104	104	0.887
105	105	0.565
106	106	0.912
107	107	0.976
108	108	0.435
109	109	0.54
11	11	0.434
110	110	0.289
111	111	0.838
112	112	0.124
113	113	0.012
114	114	0.79
115	115	0.53
116	116	0.263
117	117	0.748
118	118	0.836
119	119	0.743
12	12	0.599
120	120	0.484
121	121	0.475
122	122	0.084
123	123	0.963
124	124	0.84
125	125	0.107
126	126	0.3
127	127	0.434
128	128	0.674
129	129	0.4
13	13	0.00522
130	130	0.0608
131	131	0.158
132	132	0.349
133	133	0.00651
134	134	0.598
135	135	0.0557
136	136	0.062
137	137	0.407
138	138	0.319
139	139	0.0501
14	14	0.919
140	140	0.717
141	141	0.294
142	142	0.754
143	143	0.0452
144	144	0.334
145	145	0.413
146	146	0.747
147	147	0.891
148	148	0.633
149	149	0.531
15	15	0.944
150	150	0.831
151	151	0.927
152	152	0.568
153	153	0.996
154	154	0.743
155	155	0.767
156	156	0.665
157	157	0.222
158	158	0.506
159	159	0.545
16	16	0.663
160	160	0.58
161	161	0.978
162	162	0.649
163	163	0.801
164	164	0.599
165	165	0.448
166	166	0.643
167	167	0.775
168	168	0.682
169	169	0.521
17	17	0.735
18	18	0.193
19	19	0.0587
2	2	0.375
20	20	0.238
21	21	0.649
22	22	0.478
23	23	0.0592
24	24	0.456
25	25	0.828
26	26	0.106
27	27	0.856
28	28	0.784
29	29	0.482
3	3	0.305
30	30	0.84
31	31	0.544
32	32	0.0312
33	33	0.593
34	34	0.585
35	35	0.53
36	36	0.424
37	37	0.648
38	38	0.995
39	39	0.658
4	4	0.431
40	40	0.532
41	41	0.00767
42	42	0.934
43	43	0.16
44	44	0.795
45	45	0.978
46	46	0.931
47	47	0.785
48	48	0.853
49	49	0.299
5	5	0.269
50	50	0.416
51	51	0.472
52	52	0.54
53	53	0.386
54	54	0.393
55	55	0.621
56	56	0.881
57	57	0.903
58	58	0.777
59	59	0.304
6	6	0.575
60	60	0.742
61	61	0.263
62	62	0.226
63	63	0.522
64	64	0.827
65	65	0.429
66	66	0.0397
67	67	0.514
68	68	0.0536
69	69	0.513
7	7	0.464
70	70	0.487
71	71	0.662
72	72	0.402
73	73	0.419
74	74	0.184
75	75	0.359
76	76	0.498
77	77	0.367
78	78	0.321
79	79	0.348
8	8	0.896
80	80	0.239
81	81	0.209
82	82	0.0767
83	83	0.595
84	84	0.778
85	85	0.0766
86	86	0.49
87	87	0.214
88	88	0.869
89	89	0.145
9	9	0.054
90	90	0.666
91	91	0.0843
92	92	0.491
93	93	0.771
94	94	0.0762
95	95	0.199
96	96	0.0568
97	97	0.85
98	98	0.763
99	99	0.59

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11819

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101225 MKN-45 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0100787 (gastric cancer cell line sample)
0102380 (gastric adenocarcinoma cell line sample)
0101225 (MKN-45 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0010039,UBERON:0003104,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0005409,UBERON:0007026,UBERON:0001041,UBERON:0009142,UBERON:0006595,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00004903
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002251,CL:0002178,CL:0000223
+|accession_numbers=CAGE;DRX007891;DRR008763;DRZ000188;DRZ001573;DRZ011538;DRZ012923
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0100787,FF:0102380,FF:0101225
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!270.46!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.07!115.85!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.06!112.68!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.77!58.50!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.67!52.02!PPARG;;chr13:73633131..73633149,+!p1@KLF5!1.59!381.26!KLF5;;chr17:74137321..74137337,-!p1@FOXJ1!1.57!36.17!FOXJ1;;chr20:42984330..42984364,+!p2@HNF4A!1.55!34.44!HNF4A;;chr20:22564895..22564910,-!p1@FOXA2!1.48!29.39!FOXA2;;chr8:102504651..102504683,+!p1@GRHL2!1.46!28.10!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.39!23.63!FOXA3;;chr11:34645791..34645836,+!p3@EHF!1.38!23.20!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.38!23.20!ONECUT3;;chr6:29648890..29648944,-!p1@ZFP57!1.38!22.77!ZFP57;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.52!TFAP2A;;chr17:41622765..41622821,-!p2@ETV4!1.35!32.28!ETV4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.75!ZBED1;;chr11:61520075..61520136,+!p1@C11orf9!1.30!39.62!C11orf9;;chr3:169381420..169381535,-!p1@MECOM!1.30!22.05!MECOM;;chr17:70117153..70117174,+!p1@SOX9!1.28!182.27!SOX9;;chr12:54380404..54380433,+!p3@HOXC10!1.28!17.87!HOXC10;;chr7:156803329..156803362,-!p1@MNX1!1.25!16.71!MNX1;;chr3:168864315..168864339,-!p2@MECOM!1.24!26.94!MECOM;;chr18:19749541..19749557,+!p1@GATA6!1.23!49.86!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.16!IRF6;;chr19:50432453..50432468,+!p1@ATF5!1.17!764.26!ATF5;;chr16:52581025..52581072,-!p1@TOX3!1.17!13.69!TOX3;;chr11:46299199..46299233,+!p1@CREB3L1!1.16!68.59!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.16!30.40!PPARG;;chr1:27240455..27240474,-!p1@NR0B2!1.15!12.97!NR0B2;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.96!HOXB6;;chr17:41622731..41622764,-!p5@ETV4!1.11!11.82!ETV4;;chr11:34642656..34642667,+!p2@EHF!1.09!11.38!EHF;;chr11:63684602..63684664,-!p1@RCOR2!1.04!20.17!RCOR2;;chr3:32023232..32023273,+!p1@ZNF860!1.04!14.41!ZNF860;;chr17:41622925..41622976,-!p3@ETV4!1.03!14.70!ETV4;;chr12:54447637..54447659,+!p4@HOXC4!1.02!9.51!HOXC4;;chr5:2751762..2751784,-!p1@IRX2!1.02!9.51!IRX2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.37!TFCP2L1;;chr7:73038839..73038862,-!p1@MLXIPL!1.01!9.22!MLXIPL;;chr12:54447599..54447630,+!p3@HOXC4!1.00!11.24!HOXC4;;chr1:197881592..197881617,+!p6@LHX9!1.00!8.93!LHX9;;chr9:96717629..96717644,-!p1@BARX1!0.99!8.79!BARX1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.40!PITX1;;chr17:46687959..46688007,-!p2@HOXB7!0.98!11.82!HOXB7;;chr7:14028488..14028516,-!p2@ETV1!0.97!9.22!ETV1;;chr10:28032421..28032494,-!p2@MKX!0.97!8.36!MKX;;chr5:150284532..150284549,-!p1@ZNF300!0.96!17.29!ZNF300;;chr12:54380036..54380091,+!p4@HOXC10!0.96!8.21!HOXC10;;chr12:54379136..54379150,+!p4@HOXC5!0.96!8.07!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.54!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.95!7.92!GATA4;;chr17:36105042..36105060,-!p1@HNF1B!0.95!7.92!HNF1B;;chr17:41623692..41623715,-!p1@ETV4!0.94!33.72!ETV4;;chr7:14028743..14028799,-!p3@ETV1!0.92!9.37!ETV1;;chr18:19749517..19749531,+!p3@GATA6!0.91!13.11!GATA6;;chr7:27219833..27219845,-!p7@HOXA10!0.91!7.06!HOXA10;;chr12:54378923..54378966,+!p1@HOXC10!0.91!7.06!HOXC10;;chr1:42801540..42801562,-!p4@FOXJ3!0.91!7.06!FOXJ3;;chr5:174151553..174151610,+!p1@MSX2!0.90!11.82!MSX2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.92!MSX2;;chr11:2291814..2291825,-!p2@ASCL2!0.90!6.92!ASCL2;;chr14:37131058..37131139,+!p1@PAX9!0.89!6.77!PAX9;;chr11:65554528..65554546,+!p1@OVOL1!0.88!6.63!OVOL1;;chr20:22565370..22565388,-!p2@FOXA2!0.88!6.63!FOXA2;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.34!SIM2;;chr6:41514305..41514359,+!p2@FOXP4!0.86!55.33!FOXP4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.20!IKZF3;;chr9:129376201..129376225,+!p1@LMX1B!0.86!6.20!LMX1B;;chr7:14029283..14029311,-!p1@ETV1!0.85!34.44!ETV1;;chr19:33865009..33865090,+!p3@CEBPG!0.85!8.21!CEBPG;;chr12:66218836..66218888,+!p1@HMGA2!0.84!58.64!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!0.82!8.36!HOXB7;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.35!MECOM;;chr11:32457103..32457123,-!p3@WT1!0.82!5.62!WT1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.82!5.62!EN2;;chr17:41622834..41622883,-!p6@ETV4!0.81!6.77!ETV4;;chr16:52580953..52580992,-!p2@TOX3!0.81!5.48!TOX3;;chr1:10856639..10856662,-!p2@CASZ1!0.81!5.48!CASZ1;;chr18:3449330..3449344,+!p10@TGIF1!0.80!7.20!TGIF1;;chr3:168865250..168865272,-!p5@MECOM!0.80!5.33!MECOM;;chr6:135502501..135502546,+!p1@MYB!0.79!6.34!MYB;;chr12:54332608..54332636,+!p1@HOXC13!0.79!5.19!HOXC13;;chr13:28543285..28543314,-!p2@CDX2!0.79!5.19!CDX2;;chr6:41514078..41514158,+!p1@FOXP4!0.78!49.28!FOXP4;;chr6:34524093..34524135,-!p1@SPDEF!0.77!4.90!SPDEF;;chr1:119530493..119530572,-!p1@TBX15!0.77!4.90!TBX15;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.90!HEYL;;chr11:32457075..32457095,-!p1@WT1!0.77!4.90!WT1;;chr10:114711019..114711041,+!p7@TCF7L2!0.76!7.49!TCF7L2;;chr3:18486354..18486377,-!p2@SATB1!0.76!6.05!SATB1;;chr2:177053386..177053402,+!p1@HOXD1!0.76!4.75!HOXD1;;chr7:27190547..27190591,-!p1@HOXA6!0.76!4.75!HOXA6;;chr17:3610507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ECOM;;chr11:129245526..129245553,+!p1@BARX2!0.57!2.74!BARX2;;chr12:121416455..121416479,+!p2@HNF1A!0.57!2.74!HNF1A;;chr13:79177703..79177729,-!p2@POU4F1!0.57!2.74!POU4F1;;chr17:36861675..36861697,+!p3@MLLT6!0.56!7.20!MLLT6;;chr11:46299539..46299620,+!p2@CREB3L1!0.56!4.90!CREB3L1;;chr3:40547505..40547545,+!p2@ZNF620!0.56!4.61!ZNF620;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.60!HMGA2;;chr19:1753535..1753546,+!p3@ONECUT3!0.56!2.59!ONECUT3;;chr1:209979411..209979433,-!p2@IRF6!0.56!2.59!IRF6;;chr20:18038486..18038520,-!p2@OVOL2!0.56!2.59!OVOL2;;chr20:22566120..22566136,-!p4@FOXA2!0.56!2.59!FOXA2;;chr3:169381183..169381205,-!p4@MECOM!0.56!2.59!MECOM;;chr3:181429704..181429722,+!p1@SOX2!0.56!2.59!SOX2;;chr6:28048343..28048354,+!p1@ZNF165!0.56!2.59!ZNF165;;chr7:96635178..96635181,+!p1@DLX6!0.56!2.59!DLX6;;chr19:33864600..33864732,+!p1@CEBPG!0.55!90.63!CEBPG;;chr9:110252035..110252057,-!p1@KLF4!0.55!51.01!KLF4;;chr11:47236584..47236679,+!p1@DDB2!0.55!35.16!DDB2;;chr20:42295713..42295738,+!p2@MYBL2!0.55!18.59!MYBL2;;chr16:29818160..29818188,+!p6@MAZ!0.55!14.55!MAZ;;chr12:19592405..19592492,+!p2@AEBP2!0.54!26.66!AEBP2;;chr1:59249688..59249703,-!p3@JUN!0.54!18.30!JUN;;chr12:66218598..66218645,+!p2@HMGA2!0.54!14.12!HMGA2;;chr19:20188776..20188826,+!p1@ZNF90!0.54!7.92!ZNF90;;chr19:33864571..33864596,+!p2@CEBPG!0.54!7.20!CEBPG;;chr1:154975110..154975149,+!p2@ZBTB7B!0.54!6.05!ZBTB7B;;chr7:27135591..27135658,-!p1@HOXA1!0.54!5.48!HOXA1;;chr7:64254834..64254854,+!p2@ZNF138!0.54!5.04!ZNF138;;chr12:66218573..66218596,+!p7@HMGA2!0.54!4.03!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.54!3.89!HMGA2;;chr12:54379477..54379498,+!p5@HOXC5!0.54!2.45!HOXC5;;chr13:100634031..100634045,+!p1@ZIC2!0.54!2.45!ZIC2;;chr22:24093154..24093183,-!p2@ZNF70!0.54!2.45!ZNF70;;chr2:45168997..45169020,+!p4@SIX3!0.54!2.45!SIX3;;chr3:168864936..168864953,-!p8@MECOM!0.54!2.45!MECOM;;chr17:17740287..17740307,-!p1@SREBF1!0.53!81.27!SREBF1;;chr20:48807875..48807982,+!p2@CEBPB!0.53!67.43!CEBPB;;chr7:26191809..26191890,+!p1@NFE2L3!0.53!14.70!NFE2L3;;chr17:61919985..61920012,-!p3@SMARCD2!0.53!6.92!SMARCD2;;chr3:71114279..71114308,-!p13@FOXP1!0.53!4.32!FOXP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.53!2.88!TFAP2A;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.13!MYBL2;;chr12:2986275..2986363,-!p1@FOXM1!0.52!29.83!FOXM1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.52!26.51!PPP1R13L;;chr6:126102292..126102329,+!p3@NCOA7!0.52!9.37!NCOA7;;chr12:3068466..3068495,+!p3@TEAD4!0.52!5.91!TEAD4;;chr20:50159198..50159299,-!p1@NFATC2!0.52!3.75!NFATC2;;chr20:55204351..55204377,+!p1@TFAP2C!0.52!3.17!TFAP2C;;chr19:44764031..44764072,+!p1@ZNF233!0.52!3.03!ZNF233;;chr1:47903709..47903764,+!p1@BC169308!0.52!2.74!FOXD2;;chr20:42984073..42984085,+!p5@HNF4A!0.52!2.31!HNF4A;;chr2:45169684..45169715,+!p9@SIX3!0.52!2.31!SIX3;;chr3:14058794..14058815,+!p1@TPRXL!0.52!2.31!TPRXL;;chr17:45928521..45928539,-!p1@SP6!0.52!2.31!SP6;;chr13:95364784..95364806,-!p1@SOX21!0.52!2.31!SOX21;;chr7:27153454..27153469,-!p2@HOXA3!0.52!2.31!HOXA3;;chr7:27224842..27224872,-!p1@HOXA11!0.52!2.31!HOXA11;;chr7:96654133..96654150,-!p1@DLX5!0.52!2.31!DLX5;;chr1:212782094..212782109,+!p1@ATF3!0.51!79.54!ATF3;;chr11:130184753..130184824,-!p1@ZBTB44!0.51!39.91!ZBTB44;;chr7:28725740..28725778,+!p1@CREB5!0.51!26.08!CREB5;;chr16:30537839..30537929,-!p1@ZNF768!0.51!17.87!ZNF768;;chr16:86600426..86600441,+!p1@FOXC2!0.51!6.63!FOXC2;;chr19:58071166..58071189,-!p2@ZNF550!0.51!6.48!ZNF550;;chr1:161736038..161736056,+!p4@ATF6!0.51!6.20!ATF6;;chr3:185826814..185826825,-!p3@ETV5!0.51!4.75!ETV5;;chr17:7388010..7388017,-!p5@ZBTB4!0.51!4.32!ZBTB4;;chr12:124457746..124457828,+!p1@ZNF664!0.50!109.22!ZNF664;;chr2:70142232..70142251,+!p1@MXD1!0.50!15.85!MXD1;;chr1:8763440..8763460,-!p2@RERE!0.50!13.83!RERE;;chr1:8763296..8763339,-!p9@RERE!0.50!6.48!RERE;;chr12:6798692..6798723,-!p5@ZNF384!0.50!4.03!ZNF384;;chr17:61919812..61919833,-!p6@SMARCD2!0.50!2.88!SMARCD2;;chr14:95236440..95236465,-!p1@GSC!0.50!2.16!GSC;;chr17:36104873..36104903,-!p3@HNF1B!0.50!2.16!HNF1B;;chr10:102891048..102891078,+!p1@TLX1!0.50!2.16!TLX1;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.16!HOXC10;;chr1:154975229..154975247,+!p6@ZBTB7B!0.50!2.16!ZBTB7B;;chr1:209979449..209979460,-!p3@IRF6!0.50!2.16!IRF6;;chr8:102504690..102504704,+!p3@GRHL2!0.50!2.16!GRHL2;;chr3:170075436..170075520,+!p1@SKIL!0.49!61.09!SKIL;;chr2:239148671..239148686,-!p1@HES6!0.49!9.65!HES6;;chr12:7079807..7079848,-!p1@PHB2!0.48!488.75!PHB2;;chr19:57999101..57999158,+!p1@ZNF419!0.48!18.16!ZNF419;;chr15:61521417..61521460,-!p2@RORA!0.48!5.48!RORA;;chr1:164528687..164528711,+!p6@PBX1!0.48!2.45!PBX1;;chr5:134369222..134369237,-!p8@PITX1!0.48!2.02!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!0.48!2.02!NKX2-5;;chr6:1312155..1312187,+!p2@FOXQ1!0.48!2.02!FOXQ1;;chr7:96635277..96635301,+!p7@DLX6!0.48!2.02!DLX6;;chr10:126138597..126138612,-!p1@NKX1-2!0.48!2.02!NKX1-2;;chr3:12329464..12329472,+!p6@PPARG!0.48!2.02!PPARG;;chr4:111544219..111544240,-!p1@PITX2!0.48!2.02!PITX2;;chr14:75745523..75745537,+!p1@FOS!0.47!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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0100787,FF:0101120
 |fonse_cell_line_closure=FF:0100787,FF:0101120
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gastric%2520adenocarcinoma%2520cell%2520line%253aMKN45.CNhs11819.10612-108F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10612-108F9
 |is_a=EFO:0002091;;FF:0000210;;FF:0101225
 |is_obsolete=
+|library_id=CNhs11819
+|library_id_phase_based=2:CNhs11819
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10612
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10612
 |name=gastric adenocarcinoma cell line:MKN45
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11819,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=108
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=149.48025
 |sample_age=62
+|sample_category=cell lines
 |sample_cell_catalog=RCB1001
 |sample_cell_line=MKN45
@@ Line 80: / Line 100: @@
 |top_motifs=HOX{A6,A7,B6,B7}:2.56850701599;SNAI1..3:2.28290723722;ZEB1:2.14140224788;HNF1A:1.89448765008;MYOD1:1.48453577939;VSX1,2:1.43498735317;POU2F1..3:1.28271157387;bHLH_family:1.25115933962;LMO2:1.21808273848;ADNP_IRX_SIX_ZHX:1.10429417205;FOX{I1,J2}:1.06690900386;ZBTB16:1.06122270307;HNF4A_NR2F1,2:1.05269400691;ONECUT1,2:0.883918582342;POU6F1:0.821919784506;FOXN1:0.792127180071;FOXQ1:0.751053915044;TP53:0.748443295864;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.686743757509;FOXA2:0.685187625108;ELK1,4_GABP{A,B1}:0.676359867018;PBX1:0.668364869113;FOXD3:0.664110885244;BREu{core}:0.626904210746;RFX1:0.559544861133;XCPE1{core}:0.552183289151;RBPJ:0.502854871832;NFY{A,B,C}:0.49978104623;STAT5{A,B}:0.495384887037;RFX2..5_RFXANK_RFXAP:0.472728074245;NANOG:0.472287269119;YY1:0.46890766495;ZNF148:0.455006449608;NKX2-1,4:0.425120881171;TEF:0.42245403627;SOX2:0.399058209127;NR6A1:0.394086707322;HSF1,2:0.393065488366;MYB:0.367004634419;NR5A1,2:0.366538268228;EP300:0.359164539453;CDX1,2,4:0.355789266122;NKX2-3_NKX2-5:0.346682553571;TFAP2{A,C}:0.336348644349;IKZF2:0.33601973248;ATF4:0.327885954393;CUX2:0.318499306198;SOX{8,9,10}:0.316698509138;ZNF143:0.316274482987;CDC5L:0.302234663934;CRX:0.270073015735;PAX4:0.266998921973;LHX3,4:0.249122924504;AIRE:0.242149218161;T:0.238498159546;E2F1..5:0.234542495651;NKX3-2:0.229403964596;OCT4_SOX2{dimer}:0.227438528942;PAX8:0.206872243436;TFAP2B:0.200961815335;MTE{core}:0.195730841929;PITX1..3:0.193975361724;MTF1:0.173933603407;EN1,2:0.161396023765;POU5F1:0.152285640727;PRRX1,2:0.125204540647;ESRRA:0.107288141035;PDX1:0.103583507783;AHR_ARNT_ARNT2:0.102507166503;TOPORS:0.101574954491;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.090311987434;ZNF384:0.0634695616154;HIC1:0.0560117974057;FOX{D1,D2}:0.0285887243489;HLF:0.0145438367826;FOX{F1,F2,J1}:0.0081968614289;GATA6:-0.00114560891294;CEBPA,B_DDIT3:-0.00321602148782;RXRA_VDR{dimer}:-0.0196169415586;NKX3-1:-0.0205543522852;LEF1_TCF7_TCF7L1,2:-0.0229398886518;NRF1:-0.0434269511203;SP1:-0.0548365598902;IKZF1:-0.0686241203213;TFDP1:-0.0712599730246;DBP:-0.0806918721721;GTF2A1,2:-0.0899351244556;FOS_FOS{B,L1}_JUN{B,D}:-0.0973624119349;REST:-0.108365216661;ARID5B:-0.120319721332;PAX2:-0.123873320306;EVI1:-0.129645865603;HOX{A5,B5}:-0.161295093298;ZFP161:-0.168132290422;FOSL2:-0.202035844748;NKX6-1,2:-0.207195302908;ESR1:-0.214749206663;ATF5_CREB3:-0.215739561768;ZIC1..3:-0.223982177786;SOX17:-0.2248983276;STAT1,3:-0.229794390033;FOXO1,3,4:-0.232297872679;ALX1:-0.24464857159;NFE2:-0.248119101164;IRF7:-0.252180356216;TBP:-0.252793742012;FOXP1:-0.253098915557;BPTF:-0.263961454061;EBF1:-0.264559593406;GFI1:-0.27223705952;MED-1{core}:-0.288328693867;TFCP2:-0.292770218177;BACH2:-0.306454261749;MEF2{A,B,C,D}:-0.312511128912;FOXM1:-0.341698859695;UFEwm:-0.359597311838;HIF1A:-0.377420382481;NFIX:-0.380760871046;ELF1,2,4:-0.385422648096;HBP1_HMGB_SSRP1_UBTF:-0.40091823701;ATF2:-0.404459270658;TEAD1:-0.406171251703;ATF6:-0.409511889522;FOXP3:-0.414682208486;PATZ1:-0.428229259325;PAX6:-0.448939071507;NFKB1_REL_RELA:-0.450850504146;PPARG:-0.453569598511;NR3C1:-0.453773489328;ZBTB6:-0.465537787683;POU1F1:-0.495670121581;DMAP1_NCOR{1,2}_SMARC:-0.532953719859;TLX1..3_NFIC{dimer}:-0.541561273934;FOXL1:-0.547670702881;HOX{A4,D4}:-0.554334191519;KLF4:-0.556786189417;TAL1_TCF{3,4,12}:-0.574193610049;SPZ1:-0.575662353226;SPIB:-0.577491454354;AR:-0.600019496459;RREB1:-0.602672261157;SOX5:-0.604334248369;NFIL3:-0.605255331245;HAND1,2:-0.62269417018;SPI1:-0.623878884996;GTF2I:-0.63364184302;TBX4,5:-0.651250928671;JUN:-0.667151254511;ETS1,2:-0.675490163506;NR1H4:-0.683808589211;TLX2:-0.683942539004;ZNF238:-0.688158354734;IRF1,2:-0.688181213295;EGR1..3:-0.693393631529;RUNX1..3:-0.701139965603;CREB1:-0.715514960382;ZNF423:-0.716069419629;GLI1..3:-0.742732779373;MZF1:-0.754580873997;PRDM1:-0.773776935494;PAX3,7:-0.77395308465;XBP1:-0.782914489266;MAZ:-0.78484130032;NFE2L2:-0.791481843371;POU3F1..4:-0.804142260274;ALX4:-0.834274421786;RORA:-0.836377494691;MYBL2:-0.837047134579;STAT2,4,6:-0.837222722183;HMGA1,2:-0.859735491819;GFI1B:-0.86315346122;PAX1,9:-0.864144418354;HOXA9_MEIS1:-0.912339925001;MYFfamily:-0.97187269515;NHLH1,2:-0.981216371302;GATA4:-0.994966502067;SREBF1,2:-1.00001656495;GZF1:-1.03199526179;MAFB:-1.03266293662;NKX2-2,8:-1.05668021869;PAX5:-1.07479015681;HES1:-1.10432649973;TGIF1:-1.18096175574;SMAD1..7,9:-1.24353264606;GCM1,2:-1.32592053298;SRF:-1.33358653636;NANOG{mouse}:-1.35079096166;TFAP4:-1.41047895678;NFATC1..3:-1.47425258812;RXR{A,B,G}:-1.93068798396;NFE2L1:-2.00149616786;HMX1:-2.20241824073
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10612-108F9;search_select_hide=table117:FF:10612-108F9
 }}

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FF:10612-108F9: Difference between revisions

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Latest revision as of 14:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0