FF:10589-108D4: Difference between revisions

Latest revision as of 14:30, 3 June 2020

Name:	argyrophil small cell carcinoma cell line:TC-YIK
Species:	Human (Homo sapiens)
Library ID:	CNhs11725
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	31
cell type	unclassifiable
cell line	TC-YIK
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005178

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11725		CAGE		DRX007829		DRR008701

Accession ID Hg19

Library id		BAM		CTSS
CNhs11725		DRZ000126		DRZ001511

Accession ID Hg38

Library id		BAM		CTSS
CNhs11725		DRZ011476		DRZ012861

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005178

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10073		RNA-Seq		DRX057130		DRR062889

Accession ID Hg19

Library id		BAM		CTSS
RDhi10073		DRZ007965

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.299
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0976
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.069
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0976
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0102
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.265
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.121
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.113
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.303
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.399
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0976
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0501
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.243
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	1.197
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11725

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.08261e-5
MA0003.1	MA0003.1	0.539
MA0004.1	MA0004.1	0.0583
MA0006.1	MA0006.1	0.235
MA0007.1	MA0007.1	0.448
MA0009.1	MA0009.1	0.728
MA0014.1	MA0014.1	0.337
MA0017.1	MA0017.1	0.341
MA0018.2	MA0018.2	0.164
MA0019.1	MA0019.1	0.899
MA0024.1	MA0024.1	4.06331e-5
MA0025.1	MA0025.1	0.221
MA0027.1	MA0027.1	0.394
MA0028.1	MA0028.1	0.0938
MA0029.1	MA0029.1	0.498
MA0030.1	MA0030.1	0.0558
MA0031.1	MA0031.1	0.0748
MA0035.2	MA0035.2	0.578
MA0038.1	MA0038.1	0.128
MA0039.2	MA0039.2	0.365
MA0040.1	MA0040.1	0.809
MA0041.1	MA0041.1	0.463
MA0042.1	MA0042.1	0.607
MA0043.1	MA0043.1	0.92
MA0046.1	MA0046.1	1.11552e-42
MA0047.2	MA0047.2	0.00921
MA0048.1	MA0048.1	0.494
MA0050.1	MA0050.1	2.66862e-5
MA0051.1	MA0051.1	0.00591
MA0052.1	MA0052.1	0.0121
MA0055.1	MA0055.1	0.207
MA0057.1	MA0057.1	0.223
MA0058.1	MA0058.1	0.012
MA0059.1	MA0059.1	0.00856
MA0060.1	MA0060.1	9.26993e-4
MA0061.1	MA0061.1	6.51271e-5
MA0062.2	MA0062.2	0.0687
MA0065.2	MA0065.2	0.771
MA0066.1	MA0066.1	0.327
MA0067.1	MA0067.1	0.582
MA0068.1	MA0068.1	0.546
MA0069.1	MA0069.1	0.492
MA0070.1	MA0070.1	0.335
MA0071.1	MA0071.1	0.736
MA0072.1	MA0072.1	0.713
MA0073.1	MA0073.1	0.538
MA0074.1	MA0074.1	0.344
MA0076.1	MA0076.1	0.0337
MA0077.1	MA0077.1	0.891
MA0078.1	MA0078.1	0.407
MA0079.2	MA0079.2	0.802
MA0080.2	MA0080.2	5.45416e-9
MA0081.1	MA0081.1	0.00192
MA0083.1	MA0083.1	8.21898e-4
MA0084.1	MA0084.1	0.589
MA0087.1	MA0087.1	0.726
MA0088.1	MA0088.1	0.0955
MA0090.1	MA0090.1	8.21113e-4
MA0091.1	MA0091.1	0.716
MA0092.1	MA0092.1	0.1
MA0093.1	MA0093.1	0.0427
MA0099.2	MA0099.2	2.03989e-17
MA0100.1	MA0100.1	0.11
MA0101.1	MA0101.1	6.96638e-5
MA0102.2	MA0102.2	0.0253
MA0103.1	MA0103.1	3.06817e-6
MA0104.2	MA0104.2	0.00187
MA0105.1	MA0105.1	7.65195e-4
MA0106.1	MA0106.1	0.364
MA0107.1	MA0107.1	5.88325e-6
MA0108.2	MA0108.2	0.817
MA0111.1	MA0111.1	0.712
MA0112.2	MA0112.2	0.00403
MA0113.1	MA0113.1	0.302
MA0114.1	MA0114.1	0.0443
MA0115.1	MA0115.1	0.00106
MA0116.1	MA0116.1	0.0227
MA0117.1	MA0117.1	0.639
MA0119.1	MA0119.1	0.113
MA0122.1	MA0122.1	0.384
MA0124.1	MA0124.1	0.235
MA0125.1	MA0125.1	0.0262
MA0131.1	MA0131.1	0.551
MA0135.1	MA0135.1	0.578
MA0136.1	MA0136.1	1.02136e-6
MA0137.2	MA0137.2	0.0717
MA0138.2	MA0138.2	0.489
MA0139.1	MA0139.1	0.674
MA0140.1	MA0140.1	0.564
MA0141.1	MA0141.1	0.585
MA0142.1	MA0142.1	0.673
MA0143.1	MA0143.1	0.0251
MA0144.1	MA0144.1	0.0134
MA0145.1	MA0145.1	0.0531
MA0146.1	MA0146.1	0.573
MA0147.1	MA0147.1	0.00245
MA0148.1	MA0148.1	0.168
MA0149.1	MA0149.1	0.872
MA0150.1	MA0150.1	8.63331e-5
MA0152.1	MA0152.1	0.906
MA0153.1	MA0153.1	1.30226e-26
MA0154.1	MA0154.1	0.071
MA0155.1	MA0155.1	0.485
MA0156.1	MA0156.1	2.69252e-4
MA0157.1	MA0157.1	0.215
MA0159.1	MA0159.1	0.542
MA0160.1	MA0160.1	0.369
MA0162.1	MA0162.1	0.288
MA0163.1	MA0163.1	0.0188
MA0164.1	MA0164.1	0.314
MA0258.1	MA0258.1	0.0697
MA0259.1	MA0259.1	0.0141

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11725

Novel motif	Logo	P-value
1	1	0.806
10	10	0.466
100	100	0.354
101	101	0.978
102	102	0.628
103	103	0.158
104	104	0.375
105	105	0.58
106	106	2.74761e-5
107	107	0.0104
108	108	0.997
109	109	0.536
11	11	0.37
110	110	0.434
111	111	0.509
112	112	0.419
113	113	0.832
114	114	0.128
115	115	0.814
116	116	0.448
117	117	0.724
118	118	0.73
119	119	0.24
12	12	0.967
120	120	0.816
121	121	0.656
122	122	0.0818
123	123	0.385
124	124	0.495
125	125	0.92
126	126	0.97
127	127	0.112
128	128	0.0177
129	129	0.395
13	13	0.356
130	130	0.385
131	131	0.573
132	132	0.325
133	133	0.358
134	134	0.612
135	135	0.0858
136	136	0.489
137	137	0.355
138	138	0.982
139	139	0.487
14	14	0.615
140	140	0.985
141	141	0.552
142	142	0.579
143	143	5.59403e-4
144	144	0.103
145	145	0.239
146	146	0.595
147	147	0.419
148	148	0.337
149	149	0.114
15	15	0.431
150	150	0.242
151	151	0.25
152	152	0.0111
153	153	0.629
154	154	0.564
155	155	0.325
156	156	0.958
157	157	0.589
158	158	0.996
159	159	0.268
16	16	0.51
160	160	0.815
161	161	0.923
162	162	0.596
163	163	0.124
164	164	0.577
165	165	0.256
166	166	0.394
167	167	0.454
168	168	0.193
169	169	0.026
17	17	0.397
18	18	0.014
19	19	0.169
2	2	0.502
20	20	0.427
21	21	0.478
22	22	0.0612
23	23	0.00241
24	24	0.136
25	25	0.669
26	26	0.683
27	27	0.498
28	28	0.964
29	29	0.615
3	3	0.429
30	30	0.256
31	31	0.589
32	32	0.0116
33	33	0.796
34	34	0.262
35	35	0.587
36	36	0.45
37	37	0.171
38	38	0.358
39	39	0.202
4	4	0.816
40	40	0.907
41	41	0.0543
42	42	0.515
43	43	0.118
44	44	0.395
45	45	0.216
46	46	0.233
47	47	0.727
48	48	0.842
49	49	0.292
5	5	0.248
50	50	0.543
51	51	0.366
52	52	0.102
53	53	0.768
54	54	0.304
55	55	0.0845
56	56	0.889
57	57	0.962
58	58	0.693
59	59	0.0548
6	6	0.693
60	60	0.0145
61	61	0.989
62	62	0.345
63	63	0.151
64	64	0.761
65	65	0.0797
66	66	0.811
67	67	0.403
68	68	0.79
69	69	0.909
7	7	0.679
70	70	0.0854
71	71	0.267
72	72	0.153
73	73	0.0745
74	74	0.169
75	75	0.716
76	76	0.734
77	77	0.311
78	78	0.486
79	79	0.2
8	8	0.781
80	80	0.218
81	81	0.189
82	82	0.684
83	83	0.0512
84	84	0.96
85	85	0.0137
86	86	0.319
87	87	0.691
88	88	0.474
89	89	0.192
9	9	0.0581
90	90	0.167
91	91	0.156
92	92	0.316
93	93	0.469
94	94	0.0685
95	95	0.614
96	96	0.354
97	97	0.874
98	98	0.524
99	99	0.877

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11725

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0002535 epithelial cell of cervix
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101967 cervical cancer cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002535 (epithelial cell of cervix)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0000483 (epithelium)
0003134 (female reproductive organ)
0000479 (tissue)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0006955 (uterine epithelium)
0004801 (cervix epithelium)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005178
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005178
+|accession_numbers=CAGE;DRX007829;DRR008701;DRZ000126;DRZ001511;DRZ011476;DRZ012861
+|accession_numbers_RNASeq=RNA-Seq;DRX057130;DRR062889;DRZ007965
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0000483,UBERON:0003134,UBERON:0000479,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0006955,UBERON:0004801,UBERON:0003100,UBERON:0000474
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002535
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:182545234..182545252,-!p1@NEUROD1!2.75!558.28!NEUROD1;;chr20:20348740..20348757,+!p1@INSM1!2.72!518.73!INSM1;;chrX:25034067..25034088,-!p1@ARX!2.38!236.56!ARX;;chr8:41508327..41508355,-!p1@NKX6-3!2.34!217.92!NKX6-3;;chr7:73038839..73038862,-!p1@MLXIPL!2.29!193.99!MLXIPL;;chr4:57547454..57547469,-!p1@HOPX!2.22!165.02!HOPX;;chr6:117198400..117198441,+!p1@RFX6!2.12!129.75!RFX6;;chr13:28494130..28494168,+!p1@PDX1!2.02!104.30!PDX1;;chr13:72441315..72441454,-!p1@DACH1!1.99!189.20!DACH1;;chr11:31839488..31839515,-!p3@PAX6!1.99!95.99!PAX6;;chr5:50679228..50679288,+!p1@ISL1!1.95!88.43!ISL1;;chr7:127258139..127258173,-!p@chr7:127258139..127258173,-!1.95!87.67!PAX4;;chr18:55102628..55102646,+!p2@ONECUT2!1.92!81.88!ONECUT2;;chr8:76319876..76319926,+!p1@HNF4G!1.87!73.82!HNF4G;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.52!HNF4A;;chr11:31832658..31832681,-!p1@PAX6!1.83!66.01!PAX6;;chr18:55102598..55102623,+!p1@ONECUT2!1.80!61.47!ONECUT2;;chr20:22564895..22564910,-!p1@FOXA2!1.78!58.95!FOXA2;;chr2:219849897..219849928,-!p2@FEV!1.78!58.70!FEV;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.84!PROX1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.61!39.55!SEBOX;;chr13:72441506..72441562,-!p3@DACH1!1.59!38.29!DACH1;;chr11:16419037..16419064,-!p3@SOX6!1.59!37.54!SOX6;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.51!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.54!34.01!MNX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.53!37.54!TFAP2A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.53!33.26!SEBOX;;chr8:53166899..53166914,-!p3@ST18!1.53!33.00!ST18;;chr8:53162037..53162058,-!p5@ST18!1.52!32.25!ST18;;chr16:85932760..85932775,+!p1@IRF8!1.51!31.24!IRF8;;chr11:61520075..61520136,+!p1@C11orf9!1.49!61.98!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.38!TFAP2A;;chr1:10754477..10754517,-!p1@CASZ1!1.49!48.62!CASZ1;;chr3:157824202..157824211,-!p3@SHOX2!1.49!30.23!SHOX2;;chr11:31832610..31832639,-!p5@PAX6!1.49!29.73!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.46!27.96!NPAS3;;chr13:72441074..72441172,-!p2@DACH1!1.43!25.95!DACH1;;chr12:103351444..103351461,+!p1@ASCL1!1.39!23.68!ASCL1;;chr7:127258190..127258201,-!p@chr7:127258190..127258201,-!1.37!22.67!PAX4;;chr7:127258120..127258138,-!p@chr7:127258120..127258138,-!1.37!22.42!PAX4;;chr11:31832581..31832601,-!p7@PAX6!1.37!22.42!PAX6;;chr20:22565370..22565388,-!p2@FOXA2!1.36!21.67!FOXA2;;chr11:2292226..2292270,-!p1@ASCL2!1.35!21.16!ASCL2;;chr8:41508303..41508308,-!p2@NKX6-3!1.34!20.66!NKX6-3;;chr2:239148671..239148686,-!p1@HES6!1.31!70.29!HES6;;chr17:53342311..53342400,+!p1@HLF!1.30!21.92!HLF;;chr1:27240455..27240474,-!p1@NR0B2!1.30!19.15!NR0B2;;chr2:242556880..242556899,-!p5@THAP4!1.30!19.15!THAP4;;chr11:31832807..31832823,-!p4@PAX6!1.30!18.89!PAX6;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.91!IRF6;;chr8:11561684..11561751,+!p1@GATA4!1.28!17.89!GATA4;;chr13:41593493..41593506,-!p8@ELF1!1.27!17.64!ELF1;;chr6:19837592..19837621,+!p1@ID4!1.26!103.54!ID4;;chr13:28494109..28494122,+!p2@PDX1!1.26!17.13!PDX1;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.63!HOXA10;;chr4:149363494..149363543,-!p1@NR3C2!1.24!16.38!NR3C2;;chr1:201979703..201979721,+!p2@ELF3!1.23!15.87!ELF3;;chr7:73038867..73038878,-!p2@MLXIPL!1.23!15.87!MLXIPL;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.11!PAX6;;chr13:28543285..28543314,-!p2@CDX2!1.18!14.11!CDX2;;chr5:50681985..50682031,+!p2@ISL1!1.17!13.86!ISL1;;chr1:165325006..165325012,-!p2@LMX1A!1.17!13.86!LMX1A;;chr11:31839453..31839462,-!p9@PAX6!1.16!13.35!PAX6;;chr13:28543431..28543487,-!p1@CDX2!1.15!13.10!CDX2;;chr17:46622440..46622477,-!p5@HOXB2!1.14!14.36!HOXB2;;chr2:242556900..242556916,-!p6@THAP4!1.13!12.60!THAP4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.13!12.60!ZBED1;;chr18:56940611..56940660,-!p1@RAX!1.13!12.34!RAX;;chr9:3525867..3525902,-!p3@RFX3!1.12!41.82!RFX3;;chr2:176994408..176994492,+!p1@HOXD8!1.12!12.09!HOXD8;;chr7:27219833..27219845,-!p7@HOXA10!1.12!12.09!HOXA10;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.84!EBF3;;chr20:39317868..39317884,-!p1@MAFB!1.10!137.56!MAFB;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.75!EPAS1;;chr11:31832687..31832704,-!p6@PAX6!1.10!11.59!PAX6;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.47!EBF1;;chr1:41827095..41827155,+!p1@FOXO6!1.08!14.86!FOXO6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.08!11.09!POU3F3;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.09!NR3C2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.83!HOXC5;;chr3:157824437..157824459,-!p5@SHOX2!1.06!10.58!SHOX2;;chr16:67197654..67197716,+!p3@HSF4!1.05!10.33!HSF4;;chr2:182545282..182545294,-!p2@NEUROD1!1.04!10.08!NEUROD1;;chr13:37494275..37494304,-!p2@SMAD9!1.04!10.08!SMAD9;;chr5:124084493..124084524,-!p2@ZNF608!1.03!21.92!ZNF608;;chr2:182545296..182545307,-!p3@NEUROD1!1.03!9.83!NEUROD1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.02!20.41!ZNF395;;chr6:117198376..117198383,+!p2@RFX6!1.02!9.57!RFX6;;chr7:149471046..149471070,-!p4@ZNF467!1.02!9.57!ZNF467;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.57!MLLT3;;chr7:996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@@ Line 38: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/argyrophil%2520small%2520cell%2520carcinoma%2520cell%2520line%253aTC-YIK.CNhs11725.10589-108D4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10589-108D4
 |is_a=CL:0002535;;EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101967
 |is_obsolete=
+|library_id=CNhs11725
+|library_id_phase_based=2:CNhs11725
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10589
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10589
 |name=argyrophil small cell carcinoma cell line:TC-YIK
 |namespace=FANTOM5
@@ Line 46: / Line 62: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11725,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=108
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_tube_id=108D4
 |rna_weight_ug=78.01812
+|rnaseq_library_id=RDhi10073
 |sample_age=31
+|sample_category=cell lines
 |sample_cell_catalog=RCB0443
 |sample_cell_line=TC-YIK
@@ Line 82: / Line 103: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10589-108D4;search_select_hide=table117:FF:10589-108D4
 }}

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FF:10589-108D4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0