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{{f5samples
{{f5samples
|id=FF:10545-107H5
|DRA_sample_Accession=CAGE@SAMD00005321
|name=oral squamous cell carcinoma cell line:HSC-3, biol_rep1
|accession_numbers=CAGE;DRX007974;DRR008846;DRZ000271;DRZ001656;DRZ011621;DRZ013006
|sample_id=10545
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|rna_tube_id=107H5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
|rna_box=107
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749
|rna_position=H5
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709,FF:0102025
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB1975
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
|sample_tissue=tongue
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=64
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.13000
|rna_od260/280=2.11000
|sample_cell_type=unclassifiable
|sample_cell_line=HSC-3
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=oral squamous cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=37.14025
|rna_concentration=1.06115
|sample_note=
|profile_hcage=CNhs11717,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000344,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000930,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003343,UBERON:0003729,UBERON:0004111,UBERON:0004119,UBERON:0004785,UBERON:0004923,UBERON:0005423,UBERON:0005434,UBERON:0007026
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4,DOID:7
|sample_description=
 
|fonse_cell_line=FF:0101120,FF:0102027
|fonse_cell_line=FF:0101120,FF:0102027
|fonse_cell_line_closure=FF:0101120,FF:0102027
|fonse_cell_line_closure=FF:0101120,FF:0102027
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aHSC-3.CNhs11717.10545-107H5.hg38.nobarcode.ctss.bed.gz
|id=FF:10545-107H5
|is_a=EFO:0002091;;FF:0000210;;FF:0102025
|is_obsolete=
|library_id=CNhs11717
|library_id_phase_based=2:CNhs11717
|library_ids=CNhs11717
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10545
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10545
|name=oral squamous cell carcinoma cell line:HSC-3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11717,LSID819,release009,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=107
|rna_catalog_number=
|rna_concentration=1.06115
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.13
|rna_od260/280=2.11
|rna_position=H5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107H5
|rna_weight_ug=37.14025
|sample_age=64
|sample_category=cell lines
|sample_cell_catalog=RCB1975
|sample_cell_line=HSC-3
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=oral squamous cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.151282605841e-247!GO:0043226;organelle;7.22396655733503e-195!GO:0043229;intracellular organelle;2.70022799682188e-194!GO:0043231;intracellular membrane-bound organelle;4.14014157262558e-184!GO:0043227;membrane-bound organelle;4.93176332187794e-184!GO:0005737;cytoplasm;1.29051328349189e-183!GO:0044422;organelle part;5.57037360584676e-146!GO:0044446;intracellular organelle part;2.10834582988651e-144!GO:0044444;cytoplasmic part;6.35367504931731e-119!GO:0032991;macromolecular complex;8.61406321752114e-106!GO:0030529;ribonucleoprotein complex;7.82209279953029e-91!GO:0044237;cellular metabolic process;1.97679203912319e-87!GO:0044238;primary metabolic process;4.51777773853408e-87!GO:0005634;nucleus;5.2327020079055e-82!GO:0005515;protein binding;4.33594546018682e-81!GO:0043170;macromolecule metabolic process;1.13177952144364e-80!GO:0003723;RNA binding;2.83448312084073e-80!GO:0044428;nuclear part;4.85399700040952e-78!GO:0043233;organelle lumen;3.28360997037184e-72!GO:0031974;membrane-enclosed lumen;3.28360997037184e-72!GO:0005739;mitochondrion;4.86641444045469e-63!GO:0006396;RNA processing;5.58685030807452e-55!GO:0006412;translation;4.10754551460726e-54!GO:0043234;protein complex;2.73162364183349e-53!GO:0005840;ribosome;2.77825766623867e-52!GO:0019538;protein metabolic process;8.06716692621591e-52!GO:0016043;cellular component organization and biogenesis;1.11899495167283e-50!GO:0033036;macromolecule localization;2.32562117802884e-47!GO:0031981;nuclear lumen;7.55955660706122e-47!GO:0015031;protein transport;1.89518692807119e-46!GO:0044267;cellular protein metabolic process;4.81433499969707e-46!GO:0043283;biopolymer metabolic process;5.06710725102058e-46!GO:0044260;cellular macromolecule metabolic process;1.44837829624128e-45!GO:0031090;organelle membrane;1.65923877368414e-45!GO:0003735;structural constituent of ribosome;2.41176964802522e-45!GO:0043228;non-membrane-bound organelle;1.34008772638213e-43!GO:0043232;intracellular non-membrane-bound organelle;1.34008772638213e-43!GO:0008104;protein localization;3.7468839331933e-43!GO:0045184;establishment of protein localization;6.28873704479885e-43!GO:0005829;cytosol;2.8427606586083e-42!GO:0016071;mRNA metabolic process;3.58702165796478e-42!GO:0010467;gene expression;1.37796566405308e-41!GO:0009058;biosynthetic process;1.04071159166342e-40!GO:0044429;mitochondrial part;2.22530869630541e-40!GO:0044249;cellular biosynthetic process;3.81515336735159e-40!GO:0033279;ribosomal subunit;6.52398913664188e-40!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.84538859619638e-39!GO:0008380;RNA splicing;2.07518459107163e-39!GO:0031967;organelle envelope;5.50513367255957e-39!GO:0009059;macromolecule biosynthetic process;1.05365436907745e-38!GO:0031975;envelope;1.24831388431691e-38!GO:0006397;mRNA processing;1.23171470120606e-36!GO:0065003;macromolecular complex assembly;4.14819060792175e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.02605847244607e-34!GO:0006259;DNA metabolic process;8.06087362691495e-34!GO:0006996;organelle organization and biogenesis;1.6001424773264e-33!GO:0046907;intracellular transport;1.74353221375696e-33!GO:0022607;cellular component assembly;2.25842695031811e-31!GO:0006886;intracellular protein transport;3.42198619250432e-31!GO:0005681;spliceosome;6.01871925307616e-29!GO:0005654;nucleoplasm;9.22778025141129e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.12637769679684e-28!GO:0007049;cell cycle;5.90433409381727e-26!GO:0000166;nucleotide binding;6.45130465403781e-26!GO:0005740;mitochondrial envelope;1.01151428964999e-24!GO:0044445;cytosolic part;5.19964786188376e-24!GO:0019866;organelle inner membrane;8.43940945837077e-24!GO:0016462;pyrophosphatase activity;1.06998228024298e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.25104832229412e-23!GO:0031966;mitochondrial membrane;1.38914483801044e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.83916632339252e-23!GO:0044451;nucleoplasm part;1.9618434832556e-23!GO:0003676;nucleic acid binding;2.21504984913623e-23!GO:0017111;nucleoside-triphosphatase activity;3.86197854526586e-23!GO:0051649;establishment of cellular localization;2.09595298184482e-22!GO:0051641;cellular localization;3.97258475687273e-22!GO:0006119;oxidative phosphorylation;5.85229884493364e-22!GO:0005743;mitochondrial inner membrane;2.29772631795472e-21!GO:0015935;small ribosomal subunit;2.8829621699627e-21!GO:0016874;ligase activity;1.37087875567236e-20!GO:0022618;protein-RNA complex assembly;1.79636400711312e-20!GO:0022402;cell cycle process;5.38176214229485e-20!GO:0005730;nucleolus;8.96453727831525e-20!GO:0015934;large ribosomal subunit;9.96095059110809e-20!GO:0044455;mitochondrial membrane part;1.3857817880234e-19!GO:0012505;endomembrane system;3.67698996527428e-19!GO:0031980;mitochondrial lumen;9.27137769556701e-19!GO:0005759;mitochondrial matrix;9.27137769556701e-19!GO:0008134;transcription factor binding;1.0268129158527e-18!GO:0048770;pigment granule;1.38985878336116e-18!GO:0042470;melanosome;1.38985878336116e-18!GO:0000278;mitotic cell cycle;2.57320338016019e-18!GO:0006974;response to DNA damage stimulus;2.57970442022324e-18!GO:0000502;proteasome complex (sensu Eukaryota);3.78390921795541e-18!GO:0043285;biopolymer catabolic process;4.81710889913609e-18!GO:0016070;RNA metabolic process;4.81710889913609e-18!GO:0006512;ubiquitin cycle;8.01300308435091e-18!GO:0006605;protein targeting;9.57027547455469e-18!GO:0032553;ribonucleotide binding;1.13347480698277e-17!GO:0032555;purine ribonucleotide binding;1.13347480698277e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.02931030763863e-17!GO:0006457;protein folding;2.54565496830991e-17!GO:0017076;purine nucleotide binding;2.60725751584665e-17!GO:0044265;cellular macromolecule catabolic process;2.93545218573377e-17!GO:0019941;modification-dependent protein catabolic process;3.54164274821036e-17!GO:0043632;modification-dependent macromolecule catabolic process;3.54164274821036e-17!GO:0005694;chromosome;4.86687805359173e-17!GO:0044257;cellular protein catabolic process;4.97189487299162e-17!GO:0006511;ubiquitin-dependent protein catabolic process;8.4161818057357e-17!GO:0005746;mitochondrial respiratory chain;1.92939147305496e-16!GO:0051276;chromosome organization and biogenesis;1.96259556260866e-16!GO:0009057;macromolecule catabolic process;4.76238307467004e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.00025309618906e-16!GO:0030163;protein catabolic process;1.09669672833259e-15!GO:0008135;translation factor activity, nucleic acid binding;1.2774856296656e-15!GO:0005761;mitochondrial ribosome;1.65705607431171e-15!GO:0000313;organellar ribosome;1.65705607431171e-15!GO:0006281;DNA repair;2.30929195025667e-15!GO:0012501;programmed cell death;2.39418169311063e-15!GO:0005783;endoplasmic reticulum;3.18452584101984e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.22183681915788e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.43400495303078e-15!GO:0003954;NADH dehydrogenase activity;4.43400495303078e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.43400495303078e-15!GO:0006915;apoptosis;5.20342968440983e-15!GO:0044427;chromosomal part;6.79357631856503e-15!GO:0042254;ribosome biogenesis and assembly;7.8004774350075e-15!GO:0005524;ATP binding;9.19248998080273e-15!GO:0032559;adenyl ribonucleotide binding;1.05448166040394e-14!GO:0005635;nuclear envelope;1.26214880698421e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.74657414497469e-14!GO:0030554;adenyl nucleotide binding;3.28531918208072e-14!GO:0008219;cell death;4.21902592200952e-14!GO:0016265;death;4.21902592200952e-14!GO:0000087;M phase of mitotic cell cycle;5.06425670628496e-14!GO:0004386;helicase activity;5.6446417885574e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;5.87016231248006e-14!GO:0000375;RNA splicing, via transesterification reactions;5.87016231248006e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.87016231248006e-14!GO:0006323;DNA packaging;8.05487021708981e-14!GO:0007067;mitosis;8.76232745375934e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.77156425316665e-14!GO:0044248;cellular catabolic process;1.12591052580208e-13!GO:0016887;ATPase activity;1.13535598209054e-13!GO:0043412;biopolymer modification;1.25578484552079e-13!GO:0006366;transcription from RNA polymerase II promoter;1.56532019677021e-13!GO:0051186;cofactor metabolic process;1.72179553354904e-13!GO:0009719;response to endogenous stimulus;2.35984566726714e-13!GO:0042623;ATPase activity, coupled;2.49001093173082e-13!GO:0031965;nuclear membrane;2.63903321112106e-13!GO:0051726;regulation of cell cycle;2.82097195560194e-13!GO:0006913;nucleocytoplasmic transport;3.14860851110276e-13!GO:0000074;regulation of progression through cell cycle;3.33283335391782e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.68771915362328e-13!GO:0051082;unfolded protein binding;4.84569028809616e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.82222423247032e-13!GO:0045271;respiratory chain complex I;5.82222423247032e-13!GO:0005747;mitochondrial respiratory chain complex I;5.82222423247032e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.88028536810514e-13!GO:0042773;ATP synthesis coupled electron transport;5.88028536810514e-13!GO:0016604;nuclear body;5.90357334597052e-13!GO:0048193;Golgi vesicle transport;6.18242794154242e-13!GO:0044453;nuclear membrane part;6.29117334861226e-13!GO:0003743;translation initiation factor activity;6.72049434379286e-13!GO:0006413;translational initiation;7.47855530701017e-13!GO:0051169;nuclear transport;8.29070153357818e-13!GO:0022403;cell cycle phase;1.12836682208717e-12!GO:0044432;endoplasmic reticulum part;1.5362260326841e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.6151860702822e-12!GO:0006260;DNA replication;2.38073609755537e-12!GO:0005794;Golgi apparatus;1.10247992385729e-11!GO:0006446;regulation of translational initiation;1.41965736355708e-11!GO:0003712;transcription cofactor activity;1.68519033931754e-11!GO:0006732;coenzyme metabolic process;1.71725642647372e-11!GO:0000785;chromatin;1.94746693687802e-11!GO:0009055;electron carrier activity;2.28088962423074e-11!GO:0006464;protein modification process;2.35717102857687e-11!GO:0008026;ATP-dependent helicase activity;3.22169257136723e-11!GO:0008639;small protein conjugating enzyme activity;6.75038311487621e-11!GO:0051301;cell division;7.09229389002399e-11!GO:0006399;tRNA metabolic process;7.68477460022779e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.83805590491264e-11!GO:0016192;vesicle-mediated transport;9.11365965896905e-11!GO:0043687;post-translational protein modification;1.00117967815188e-10!GO:0005643;nuclear pore;1.1307269631494e-10!GO:0000279;M phase;1.36899699589569e-10!GO:0004842;ubiquitin-protein ligase activity;1.61781644093009e-10!GO:0043067;regulation of programmed cell death;1.65207838360472e-10!GO:0048523;negative regulation of cellular process;1.67683287211189e-10!GO:0042981;regulation of apoptosis;1.81930932349248e-10!GO:0006461;protein complex assembly;1.81930932349248e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.99512092387589e-10!GO:0016607;nuclear speck;2.10357838567497e-10!GO:0017038;protein import;2.19606198843731e-10!GO:0019787;small conjugating protein ligase activity;2.46042341103878e-10!GO:0008565;protein transporter activity;3.17994024776553e-10!GO:0005789;endoplasmic reticulum membrane;3.88082470902727e-10!GO:0050657;nucleic acid transport;5.60559868090611e-10!GO:0051236;establishment of RNA localization;5.60559868090611e-10!GO:0050658;RNA transport;5.60559868090611e-10!GO:0006403;RNA localization;6.73666027623556e-10!GO:0006364;rRNA processing;7.83282509427419e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.00988060024543e-09!GO:0016072;rRNA metabolic process;1.37503103159994e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.78773464739419e-09!GO:0065004;protein-DNA complex assembly;2.04498592825855e-09!GO:0006333;chromatin assembly or disassembly;2.06776013098464e-09!GO:0048519;negative regulation of biological process;2.58989639732484e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.58989639732484e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.59539403514555e-09!GO:0065002;intracellular protein transport across a membrane;2.89804132431733e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.88680650037923e-09!GO:0016881;acid-amino acid ligase activity;5.18102738617301e-09!GO:0043566;structure-specific DNA binding;6.42176019356985e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.7859453649055e-09!GO:0050794;regulation of cellular process;8.72204176574224e-09!GO:0009259;ribonucleotide metabolic process;8.97475747926743e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.44542458591614e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.44542458591614e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.44542458591614e-08!GO:0051188;cofactor biosynthetic process;1.44665677567115e-08!GO:0046930;pore complex;1.4477207371948e-08!GO:0006163;purine nucleotide metabolic process;1.4477207371948e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.74061511151854e-08!GO:0016568;chromatin modification;1.83189021044809e-08!GO:0015986;ATP synthesis coupled proton transport;2.37621717788746e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.37621717788746e-08!GO:0032446;protein modification by small protein conjugation;2.77017250182274e-08!GO:0016567;protein ubiquitination;3.20975624671272e-08!GO:0043038;amino acid activation;3.26190029646603e-08!GO:0006418;tRNA aminoacylation for protein translation;3.26190029646603e-08!GO:0043039;tRNA aminoacylation;3.26190029646603e-08!GO:0006164;purine nucleotide biosynthetic process;3.43036974650871e-08!GO:0009056;catabolic process;3.58652529446943e-08!GO:0051246;regulation of protein metabolic process;3.58959638727993e-08!GO:0009060;aerobic respiration;3.95791115245902e-08!GO:0016787;hydrolase activity;4.52065430236618e-08!GO:0051028;mRNA transport;4.52065430236618e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.61953945841758e-08!GO:0009260;ribonucleotide biosynthetic process;5.73926939458087e-08!GO:0009150;purine ribonucleotide metabolic process;6.5186858608132e-08!GO:0043069;negative regulation of programmed cell death;8.69924393933168e-08!GO:0048475;coated membrane;1.20774126091247e-07!GO:0030117;membrane coat;1.20774126091247e-07!GO:0005768;endosome;1.2404237328927e-07!GO:0009108;coenzyme biosynthetic process;1.29049722816559e-07!GO:0031324;negative regulation of cellular metabolic process;1.49851382238478e-07!GO:0003697;single-stranded DNA binding;1.50787039988714e-07!GO:0009141;nucleoside triphosphate metabolic process;1.52483458160875e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.55208066505678e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.5635170067583e-07!GO:0051170;nuclear import;1.68297802767033e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.90206335229999e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.90206335229999e-07!GO:0004298;threonine endopeptidase activity;1.97551698106874e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.21677815664438e-07!GO:0043066;negative regulation of apoptosis;2.2248734394958e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.27920132437377e-07!GO:0003924;GTPase activity;2.37913237061324e-07!GO:0006754;ATP biosynthetic process;2.38413907924304e-07!GO:0006753;nucleoside phosphate metabolic process;2.38413907924304e-07!GO:0045333;cellular respiration;2.46551087072164e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.51417369701004e-07!GO:0019829;cation-transporting ATPase activity;2.85419840726516e-07!GO:0030120;vesicle coat;2.87457960594087e-07!GO:0030662;coated vesicle membrane;2.87457960594087e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.02898213515957e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.63401712213033e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.63401712213033e-07!GO:0043623;cellular protein complex assembly;4.23860281170983e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.24197974836425e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.24197974836425e-07!GO:0046034;ATP metabolic process;4.49608255903094e-07!GO:0005793;ER-Golgi intermediate compartment;4.87842303623563e-07!GO:0006606;protein import into nucleus;4.87842303623563e-07!GO:0048522;positive regulation of cellular process;4.89754330327921e-07!GO:0016779;nucleotidyltransferase activity;5.38775411475737e-07!GO:0007005;mitochondrion organization and biogenesis;6.04301547150733e-07!GO:0000245;spliceosome assembly;9.23781666220086e-07!GO:0006916;anti-apoptosis;9.5652288047617e-07!GO:0003713;transcription coactivator activity;1.20258856636597e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31115420028459e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.34192157110549e-06!GO:0006261;DNA-dependent DNA replication;1.3579899782978e-06!GO:0006099;tricarboxylic acid cycle;1.43964353101695e-06!GO:0046356;acetyl-CoA catabolic process;1.43964353101695e-06!GO:0006334;nucleosome assembly;1.43964353101695e-06!GO:0045259;proton-transporting ATP synthase complex;1.50796111935386e-06!GO:0015630;microtubule cytoskeleton;1.52967357785208e-06!GO:0000151;ubiquitin ligase complex;1.69091451942098e-06!GO:0006752;group transfer coenzyme metabolic process;1.86613940694078e-06!GO:0045786;negative regulation of progression through cell cycle;2.06942905371742e-06!GO:0031497;chromatin assembly;2.43158707346217e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.76484649211786e-06!GO:0009117;nucleotide metabolic process;2.93372787023155e-06!GO:0005667;transcription factor complex;3.00904944434547e-06!GO:0009892;negative regulation of metabolic process;3.60601861480282e-06!GO:0016564;transcription repressor activity;3.66795740153159e-06!GO:0005813;centrosome;3.82508204327541e-06!GO:0005819;spindle;3.8486292667187e-06!GO:0051427;hormone receptor binding;4.32889440017998e-06!GO:0003724;RNA helicase activity;4.41991734782759e-06!GO:0016563;transcription activator activity;4.42158036555913e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.13941199209089e-06!GO:0006084;acetyl-CoA metabolic process;5.35917391645576e-06!GO:0006793;phosphorus metabolic process;6.37594434012784e-06!GO:0006796;phosphate metabolic process;6.37594434012784e-06!GO:0009967;positive regulation of signal transduction;6.60090478384127e-06!GO:0009109;coenzyme catabolic process;7.69242870935682e-06!GO:0005762;mitochondrial large ribosomal subunit;8.86516606521124e-06!GO:0000315;organellar large ribosomal subunit;8.86516606521124e-06!GO:0051329;interphase of mitotic cell cycle;9.15235534173328e-06!GO:0035257;nuclear hormone receptor binding;9.84785600597784e-06!GO:0007243;protein kinase cascade;1.03360930409988e-05!GO:0005525;GTP binding;1.25861637458547e-05!GO:0016481;negative regulation of transcription;1.26778775392139e-05!GO:0005815;microtubule organizing center;1.30019376928455e-05!GO:0051187;cofactor catabolic process;1.60073199142122e-05!GO:0006613;cotranslational protein targeting to membrane;1.71942898110282e-05!GO:0051168;nuclear export;1.7407265346903e-05!GO:0044440;endosomal part;1.86510792812033e-05!GO:0010008;endosome membrane;1.86510792812033e-05!GO:0042802;identical protein binding;1.96766525585152e-05!GO:0005770;late endosome;2.01456527136306e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.0162198177581e-05!GO:0016310;phosphorylation;2.21978512473015e-05!GO:0000314;organellar small ribosomal subunit;3.45190171305528e-05!GO:0005763;mitochondrial small ribosomal subunit;3.45190171305528e-05!GO:0008654;phospholipid biosynthetic process;3.7029292129334e-05!GO:0050789;regulation of biological process;4.01949726869181e-05!GO:0003682;chromatin binding;4.04711999679166e-05!GO:0003690;double-stranded DNA binding;4.23288705519055e-05!GO:0044431;Golgi apparatus part;6.48602828133e-05!GO:0003729;mRNA binding;6.48904448914457e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;7.00067029744109e-05!GO:0051325;interphase;7.2835761348924e-05!GO:0019843;rRNA binding;8.59068450310206e-05!GO:0048518;positive regulation of biological process;8.82482594659398e-05!GO:0043021;ribonucleoprotein binding;9.09024438656797e-05!GO:0016740;transferase activity;9.3028750364079e-05!GO:0000075;cell cycle checkpoint;9.88350542207854e-05!GO:0016491;oxidoreductase activity;0.000106828238848877!GO:0005798;Golgi-associated vesicle;0.000110158949258854!GO:0007051;spindle organization and biogenesis;0.000127860338610609!GO:0003714;transcription corepressor activity;0.000142831150503259!GO:0065009;regulation of a molecular function;0.000148372114908788!GO:0031988;membrane-bound vesicle;0.000158042136441818!GO:0005773;vacuole;0.00016900967585137!GO:0007088;regulation of mitosis;0.000169156484144373!GO:0006402;mRNA catabolic process;0.000174099953188553!GO:0008186;RNA-dependent ATPase activity;0.000180978416586203!GO:0045454;cell redox homeostasis;0.000183116506975654!GO:0032561;guanyl ribonucleotide binding;0.000197694000189506!GO:0019001;guanyl nucleotide binding;0.000197694000189506!GO:0016023;cytoplasmic membrane-bound vesicle;0.000210104444420303!GO:0005657;replication fork;0.000215783376918396!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000230039893297981!GO:0048471;perinuclear region of cytoplasm;0.000238518557682685!GO:0003899;DNA-directed RNA polymerase activity;0.00024241307711915!GO:0006950;response to stress;0.000264549050814715!GO:0000775;chromosome, pericentric region;0.000265848974605532!GO:0005769;early endosome;0.0002730677452461!GO:0043681;protein import into mitochondrion;0.000275115176092159!GO:0044452;nucleolar part;0.00029300332636453!GO:0003702;RNA polymerase II transcription factor activity;0.00029300332636453!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000293433516737704!GO:0006612;protein targeting to membrane;0.000317121220973388!GO:0045893;positive regulation of transcription, DNA-dependent;0.000335734701349754!GO:0000786;nucleosome;0.000336434427113513!GO:0030118;clathrin coat;0.000381586230573429!GO:0008094;DNA-dependent ATPase activity;0.000384913796863533!GO:0031252;leading edge;0.00039344094759892!GO:0008033;tRNA processing;0.000406406764846121!GO:0051789;response to protein stimulus;0.000447412997112256!GO:0006986;response to unfolded protein;0.000447412997112256!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000447412997112256!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000468487479264319!GO:0016853;isomerase activity;0.000512510626885315!GO:0004004;ATP-dependent RNA helicase activity;0.000517463626775354!GO:0000323;lytic vacuole;0.000524277467301716!GO:0005764;lysosome;0.000524277467301716!GO:0016363;nuclear matrix;0.000548874472346117!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000553677357168957!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000553677357168957!GO:0006302;double-strand break repair;0.000558557520927198!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000574828326806132!GO:0045941;positive regulation of transcription;0.00072310795755981!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000741841502766886!GO:0015399;primary active transmembrane transporter activity;0.000741841502766886!GO:0006626;protein targeting to mitochondrion;0.000752286614365818!GO:0007264;small GTPase mediated signal transduction;0.000785340053906863!GO:0006891;intra-Golgi vesicle-mediated transport;0.000785340053906863!GO:0000139;Golgi membrane;0.000785340053906863!GO:0031982;vesicle;0.000821379319949634!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000841996243704482!GO:0008361;regulation of cell size;0.000861895989226766!GO:0048468;cell development;0.000925316497160367!GO:0005048;signal sequence binding;0.00096884733904953!GO:0019222;regulation of metabolic process;0.00103329135670282!GO:0016197;endosome transport;0.00103329135670282!GO:0006352;transcription initiation;0.00103657109679607!GO:0030132;clathrin coat of coated pit;0.00103922935163396!GO:0030119;AP-type membrane coat adaptor complex;0.00103963155746185!GO:0019899;enzyme binding;0.00105271543041467!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00114211521448091!GO:0006401;RNA catabolic process;0.00114211521448091!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00114973550117325!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00114973550117325!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00114973550117325!GO:0051052;regulation of DNA metabolic process;0.00117767941861948!GO:0005885;Arp2/3 protein complex;0.00118706404864718!GO:0051252;regulation of RNA metabolic process;0.00118706404864718!GO:0031410;cytoplasmic vesicle;0.00119273389001949!GO:0008250;oligosaccharyl transferase complex;0.00122725969494297!GO:0031072;heat shock protein binding;0.00125270875889565!GO:0016251;general RNA polymerase II transcription factor activity;0.00135001762543303!GO:0006091;generation of precursor metabolites and energy;0.00142475182065215!GO:0043065;positive regulation of apoptosis;0.0014295547880165!GO:0033116;ER-Golgi intermediate compartment membrane;0.00144396906517686!GO:0005637;nuclear inner membrane;0.00150339316112255!GO:0006417;regulation of translation;0.00155631754543621!GO:0008632;apoptotic program;0.00164915431450915!GO:0000776;kinetochore;0.00167307711620035!GO:0005684;U2-dependent spliceosome;0.00170598441382004!GO:0016049;cell growth;0.00170599465127991!GO:0030131;clathrin adaptor complex;0.00171132280841275!GO:0046983;protein dimerization activity;0.00171312165581237!GO:0004576;oligosaccharyl transferase activity;0.00174283958515351!GO:0043068;positive regulation of programmed cell death;0.00179262557584355!GO:0045892;negative regulation of transcription, DNA-dependent;0.0018348861654046!GO:0032508;DNA duplex unwinding;0.0019077524470785!GO:0032392;DNA geometric change;0.0019077524470785!GO:0003678;DNA helicase activity;0.00191170667137182!GO:0009165;nucleotide biosynthetic process;0.00194343345256321!GO:0046474;glycerophospholipid biosynthetic process;0.0020344876790282!GO:0046966;thyroid hormone receptor binding;0.00212519669411647!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00223805179334265!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00223805179334265!GO:0019867;outer membrane;0.00226912793906098!GO:0051920;peroxiredoxin activity;0.00236106880180252!GO:0030880;RNA polymerase complex;0.00242057759946386!GO:0048500;signal recognition particle;0.00242391053870824!GO:0005788;endoplasmic reticulum lumen;0.00243243971701912!GO:0006414;translational elongation;0.00247713495365756!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0024910873673901!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00250345965917865!GO:0006405;RNA export from nucleus;0.00250345965917865!GO:0030663;COPI coated vesicle membrane;0.00255658868078823!GO:0030126;COPI vesicle coat;0.00255658868078823!GO:0008139;nuclear localization sequence binding;0.00258428795164064!GO:0031968;organelle outer membrane;0.00271379615592821!GO:0046489;phosphoinositide biosynthetic process;0.00272561502403945!GO:0030867;rough endoplasmic reticulum membrane;0.00278157065754858!GO:0015980;energy derivation by oxidation of organic compounds;0.0028992178736803!GO:0016859;cis-trans isomerase activity;0.00299848886567895!GO:0016126;sterol biosynthetic process;0.0031051982380897!GO:0018196;peptidyl-asparagine modification;0.00312800574064836!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00312800574064836!GO:0043414;biopolymer methylation;0.00312800574064836!GO:0001558;regulation of cell growth;0.00312800574064836!GO:0006268;DNA unwinding during replication;0.00313404025218753!GO:0050790;regulation of catalytic activity;0.00317439367576598!GO:0043488;regulation of mRNA stability;0.00328137156608252!GO:0043487;regulation of RNA stability;0.00328137156608252!GO:0030133;transport vesicle;0.00336815604604689!GO:0007006;mitochondrial membrane organization and biogenesis;0.00338775919579115!GO:0000082;G1/S transition of mitotic cell cycle;0.00387521800437119!GO:0000059;protein import into nucleus, docking;0.00424320396226703!GO:0051087;chaperone binding;0.00427843571818111!GO:0005741;mitochondrial outer membrane;0.00431894548978931!GO:0007093;mitotic cell cycle checkpoint;0.00431894548978931!GO:0008312;7S RNA binding;0.00436276960670898!GO:0030658;transport vesicle membrane;0.00439777503676379!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00447938395250524!GO:0003684;damaged DNA binding;0.00452222615806987!GO:0043492;ATPase activity, coupled to movement of substances;0.00457785509059657!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00459350923983169!GO:0003711;transcription elongation regulator activity;0.00459741689029519!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00476194756800245!GO:0000428;DNA-directed RNA polymerase complex;0.00476194756800245!GO:0030137;COPI-coated vesicle;0.00484328271711303!GO:0043624;cellular protein complex disassembly;0.00495443398065418!GO:0006611;protein export from nucleus;0.00528499759095031!GO:0004527;exonuclease activity;0.00530379382101296!GO:0030176;integral to endoplasmic reticulum membrane;0.00546107916388336!GO:0046467;membrane lipid biosynthetic process;0.00547780777471042!GO:0006818;hydrogen transport;0.00549543153502191!GO:0015992;proton transport;0.00553378506165745!GO:0006338;chromatin remodeling;0.00560349584892639!GO:0016272;prefoldin complex;0.00560349584892639!GO:0000049;tRNA binding;0.00566952242993779!GO:0006979;response to oxidative stress;0.00568288049387585!GO:0035258;steroid hormone receptor binding;0.00586726037409586!GO:0032984;macromolecular complex disassembly;0.00588398100753414!GO:0006650;glycerophospholipid metabolic process;0.00591354652763117!GO:0006383;transcription from RNA polymerase III promoter;0.00597111183190308!GO:0019752;carboxylic acid metabolic process;0.00612503558897199!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00613330381110029!GO:0005869;dynactin complex;0.0061559437884275!GO:0030036;actin cytoskeleton organization and biogenesis;0.00621499584670063!GO:0022890;inorganic cation transmembrane transporter activity;0.00630958645875245!GO:0046483;heterocycle metabolic process;0.00646478655493135!GO:0031326;regulation of cellular biosynthetic process;0.00650580689617961!GO:0043022;ribosome binding;0.00656795922991172!GO:0007010;cytoskeleton organization and biogenesis;0.00669702142499154!GO:0007052;mitotic spindle organization and biogenesis;0.00674394604885113!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00674394604885113!GO:0045047;protein targeting to ER;0.00674394604885113!GO:0005791;rough endoplasmic reticulum;0.00676545842594477!GO:0006275;regulation of DNA replication;0.00676545842594477!GO:0006310;DNA recombination;0.00726459140930451!GO:0006839;mitochondrial transport;0.00730511656825726!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00771463161908458!GO:0006082;organic acid metabolic process;0.0077308775575595!GO:0015631;tubulin binding;0.00777791375484127!GO:0032259;methylation;0.00783124104311362!GO:0008022;protein C-terminus binding;0.00793673251473714!GO:0008283;cell proliferation;0.00793673251473714!GO:0008610;lipid biosynthetic process;0.00820577023958491!GO:0030125;clathrin vesicle coat;0.00831492667149109!GO:0030665;clathrin coated vesicle membrane;0.00831492667149109!GO:0065007;biological regulation;0.00831492667149109!GO:0050662;coenzyme binding;0.00854523331006161!GO:0000792;heterochromatin;0.00861835702920415!GO:0016044;membrane organization and biogenesis;0.00866328950952321!GO:0005876;spindle microtubule;0.00879811847518544!GO:0006520;amino acid metabolic process;0.0092608193698385!GO:0005856;cytoskeleton;0.00946607480144109!GO:0030384;phosphoinositide metabolic process;0.00952883052803481!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00953537728793943!GO:0008637;apoptotic mitochondrial changes;0.00968464290123062!GO:0051338;regulation of transferase activity;0.00991102281139693!GO:0043241;protein complex disassembly;0.00991102281139693!GO:0007059;chromosome segregation;0.0100414703213823!GO:0009889;regulation of biosynthetic process;0.0104036211813278!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0105764821816821!GO:0006376;mRNA splice site selection;0.0106044604410645!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0106044604410645!GO:0048487;beta-tubulin binding;0.0106713265446576!GO:0006917;induction of apoptosis;0.0107099765602291!GO:0051287;NAD binding;0.0107191140886651!GO:0003725;double-stranded RNA binding;0.0109393821576059!GO:0030660;Golgi-associated vesicle membrane;0.0109704232011356!GO:0045792;negative regulation of cell size;0.0112627116736918!GO:0040029;regulation of gene expression, epigenetic;0.0114517981105158!GO:0051059;NF-kappaB binding;0.0115112979166744!GO:0005905;coated pit;0.0115184199574901!GO:0008234;cysteine-type peptidase activity;0.0116509346102853!GO:0031124;mRNA 3'-end processing;0.0120857962989376!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0120857962989376!GO:0015002;heme-copper terminal oxidase activity;0.0120857962989376!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0120857962989376!GO:0004129;cytochrome-c oxidase activity;0.0120857962989376!GO:0008168;methyltransferase activity;0.0121929743540245!GO:0009112;nucleobase metabolic process;0.0131032639448654!GO:0031529;ruffle organization and biogenesis;0.0132528904053391!GO:0006607;NLS-bearing substrate import into nucleus;0.0132978012179178!GO:0007034;vacuolar transport;0.0133547364346578!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0134174097990749!GO:0012502;induction of programmed cell death;0.0139441526842909!GO:0006354;RNA elongation;0.0143396821622859!GO:0045045;secretory pathway;0.0143396821622859!GO:0045936;negative regulation of phosphate metabolic process;0.0143396821622859!GO:0016741;transferase activity, transferring one-carbon groups;0.014481431681579!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0145488266595727!GO:0030308;negative regulation of cell growth;0.0152926826170903!GO:0009116;nucleoside metabolic process;0.015359246823889!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.015359246823889!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0155868385176851!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0158691580871379!GO:0005774;vacuolar membrane;0.0158691580871379!GO:0007040;lysosome organization and biogenesis;0.0163618270193192!GO:0022411;cellular component disassembly;0.016823993856845!GO:0030521;androgen receptor signaling pathway;0.0173586597482758!GO:0051098;regulation of binding;0.0174191233758491!GO:0030027;lamellipodium;0.0174191233758491!GO:0006289;nucleotide-excision repair;0.0178198047523887!GO:0006892;post-Golgi vesicle-mediated transport;0.0179111343392241!GO:0003746;translation elongation factor activity;0.0179111343392241!GO:0031323;regulation of cellular metabolic process;0.0183693411346189!GO:0000209;protein polyubiquitination;0.0189950410194945!GO:0051101;regulation of DNA binding;0.019162181753649!GO:0009893;positive regulation of metabolic process;0.0191958471445401!GO:0006695;cholesterol biosynthetic process;0.0193235769011441!GO:0016584;nucleosome positioning;0.0194567110476453!GO:0043549;regulation of kinase activity;0.0194719550571546!GO:0005832;chaperonin-containing T-complex;0.0198341391097577!GO:0048146;positive regulation of fibroblast proliferation;0.0202254599735633!GO:0005669;transcription factor TFIID complex;0.0204564287330555!GO:0007050;cell cycle arrest;0.0206168659086745!GO:0000086;G2/M transition of mitotic cell cycle;0.0207698922210469!GO:0046982;protein heterodimerization activity;0.0208033001040582!GO:0030518;steroid hormone receptor signaling pathway;0.0212186847707759!GO:0000339;RNA cap binding;0.0212286567571033!GO:0043596;nuclear replication fork;0.021290201956746!GO:0050178;phenylpyruvate tautomerase activity;0.0213795365904038!GO:0031901;early endosome membrane;0.0216474834441884!GO:0031625;ubiquitin protein ligase binding;0.0217227486537699!GO:0006730;one-carbon compound metabolic process;0.0217896260005158!GO:0030503;regulation of cell redox homeostasis;0.0228791030688455!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0229260852541951!GO:0004674;protein serine/threonine kinase activity;0.0231336576962694!GO:0030659;cytoplasmic vesicle membrane;0.0231427838853511!GO:0030029;actin filament-based process;0.0233143290993749!GO:0048144;fibroblast proliferation;0.0233558018758191!GO:0048145;regulation of fibroblast proliferation;0.0233558018758191!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0236942204190879!GO:0017166;vinculin binding;0.0236942204190879!GO:0008180;signalosome;0.0236942204190879!GO:0030134;ER to Golgi transport vesicle;0.0237643842506188!GO:0006378;mRNA polyadenylation;0.0240520767506194!GO:0006368;RNA elongation from RNA polymerase II promoter;0.024327864186292!GO:0000178;exosome (RNase complex);0.024327864186292!GO:0001836;release of cytochrome c from mitochondria;0.0243673241282885!GO:0051540;metal cluster binding;0.0243673241282885!GO:0051536;iron-sulfur cluster binding;0.0243673241282885!GO:0001726;ruffle;0.0246110700737554!GO:0046822;regulation of nucleocytoplasmic transport;0.0250279064067964!GO:0008629;induction of apoptosis by intracellular signals;0.0252938032631642!GO:0000096;sulfur amino acid metabolic process;0.0257014873146334!GO:0000922;spindle pole;0.0257467246609813!GO:0008538;proteasome activator activity;0.0257487343402401!GO:0022415;viral reproductive process;0.025759619571615!GO:0005862;muscle thin filament tropomyosin;0.0260076662385833!GO:0007033;vacuole organization and biogenesis;0.0260730594256933!GO:0043154;negative regulation of caspase activity;0.0261364787109666!GO:0042393;histone binding;0.0262162360978142!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0265640478817761!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0266158547572891!GO:0045926;negative regulation of growth;0.0270355722350015!GO:0004003;ATP-dependent DNA helicase activity;0.027120747213175!GO:0008097;5S rRNA binding;0.0272204818811154!GO:0031902;late endosome membrane;0.0276979863853574!GO:0030032;lamellipodium biogenesis;0.0282968138298057!GO:0047485;protein N-terminus binding;0.0285766403013185!GO:0006733;oxidoreduction coenzyme metabolic process;0.0292818929210148!GO:0006144;purine base metabolic process;0.0296018163283339!GO:0022406;membrane docking;0.0302990125754327!GO:0048278;vesicle docking;0.0302990125754327!GO:0045859;regulation of protein kinase activity;0.0302990125754327!GO:0040008;regulation of growth;0.030342708799698!GO:0030031;cell projection biogenesis;0.0307545556023756!GO:0042326;negative regulation of phosphorylation;0.0310669658800068!GO:0016125;sterol metabolic process;0.0314124089467401!GO:0033673;negative regulation of kinase activity;0.0317151528724446!GO:0006469;negative regulation of protein kinase activity;0.0317151528724446!GO:0006509;membrane protein ectodomain proteolysis;0.0321398486271369!GO:0033619;membrane protein proteolysis;0.0321398486271369!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0322828390784463!GO:0044437;vacuolar part;0.0322828390784463!GO:0006284;base-excision repair;0.0322912746025149!GO:0009615;response to virus;0.0324928536875646!GO:0006506;GPI anchor biosynthetic process;0.0329994879048671!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0329994879048671!GO:0010257;NADH dehydrogenase complex assembly;0.0329994879048671!GO:0033108;mitochondrial respiratory chain complex assembly;0.0329994879048671!GO:0007242;intracellular signaling cascade;0.0331791348871621!GO:0007041;lysosomal transport;0.0332527498316443!GO:0048037;cofactor binding;0.0332993417156617!GO:0030127;COPII vesicle coat;0.0343321933881384!GO:0012507;ER to Golgi transport vesicle membrane;0.0343321933881384!GO:0001952;regulation of cell-matrix adhesion;0.0349126445151505!GO:0006767;water-soluble vitamin metabolic process;0.0350101581043239!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0350222661847839!GO:0004518;nuclease activity;0.0351814643851989!GO:0008426;protein kinase C inhibitor activity;0.0355601938545662!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.035726992098532!GO:0031123;RNA 3'-end processing;0.0357573949424133!GO:0030128;clathrin coat of endocytic vesicle;0.0359033980656673!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0359033980656673!GO:0030122;AP-2 adaptor complex;0.0359033980656673!GO:0006672;ceramide metabolic process;0.0364139047154162!GO:0006505;GPI anchor metabolic process;0.0366502563025508!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0366502563025508!GO:0006740;NADPH regeneration;0.0366502563025508!GO:0006098;pentose-phosphate shunt;0.0366502563025508!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0378819048907358!GO:0006643;membrane lipid metabolic process;0.0383258814606987!GO:0022408;negative regulation of cell-cell adhesion;0.0383956081657824!GO:0031371;ubiquitin conjugating enzyme complex;0.0388964577145942!GO:0001889;liver development;0.0394629427372253!GO:0051348;negative regulation of transferase activity;0.039670629700062!GO:0045334;clathrin-coated endocytic vesicle;0.039911027370841!GO:0043284;biopolymer biosynthetic process;0.0408290306056929!GO:0005758;mitochondrial intermembrane space;0.0408867502568009!GO:0005874;microtubule;0.0414459868670159!GO:0050811;GABA receptor binding;0.0425094472900879!GO:0006497;protein amino acid lipidation;0.0430764153577626!GO:0007004;telomere maintenance via telomerase;0.04329578903028!GO:0004532;exoribonuclease activity;0.0437303584186353!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0437303584186353!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0441535500816267!GO:0044433;cytoplasmic vesicle part;0.044443466770446!GO:0008243;plasminogen activator activity;0.0449016049203992!GO:0017134;fibroblast growth factor binding;0.0449016049203992!GO:0006595;polyamine metabolic process;0.045032960620792!GO:0031532;actin cytoskeleton reorganization;0.0453845278763121!GO:0042770;DNA damage response, signal transduction;0.0462081119298831!GO:0008047;enzyme activator activity;0.0466291634415514!GO:0035035;histone acetyltransferase binding;0.0473141769815415!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0479704834895172!GO:0005784;translocon complex;0.0480574368936738!GO:0006904;vesicle docking during exocytosis;0.0482189079845295!GO:0030911;TPR domain binding;0.0482189079845295!GO:0046519;sphingoid metabolic process;0.0483796402882296!GO:0008092;cytoskeletal protein binding;0.0485169993063649!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0485170596415984!GO:0051539;4 iron, 4 sulfur cluster binding;0.0488950645007086!GO:0043331;response to dsRNA;0.0490072546996636!GO:0008408;3'-5' exonuclease activity;0.0492357847241231!GO:0031325;positive regulation of cellular metabolic process;0.049301252378647!GO:0032200;telomere organization and biogenesis;0.0493584554153388!GO:0000723;telomere maintenance;0.0493584554153388!GO:0004192;cathepsin D activity;0.049700964381411!GO:0043601;nuclear replisome;0.0497246242085644!GO:0030894;replisome;0.0497246242085644
|sample_id=10545
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=tongue
|top_motifs=ZEB1:1.72497826563;SNAI1..3:1.6507535956;TP53:1.56582753291;VSX1,2:1.51164096846;TBX4,5:1.43563090051;ONECUT1,2:1.33252792039;RBPJ:1.31278096757;NR6A1:1.30217618515;FOXM1:1.26196535304;IRF7:1.21367833464;CDX1,2,4:1.15875414357;PAX4:1.13521842663;ZBTB16:1.05728055331;FOXQ1:1.00221691918;ARID5B:0.978549809088;PPARG:0.914963570882;FOXD3:0.909021069794;PAX6:0.892458540508;NKX2-1,4:0.892260550795;UFEwm:0.868376581818;PAX1,9:0.826902444008;GCM1,2:0.814316808508;MYOD1:0.797423067244;PITX1..3:0.79684595157;HOXA9_MEIS1:0.788425969822;ZIC1..3:0.785209412841;E2F1..5:0.745382691154;bHLH_family:0.74031459123;ADNP_IRX_SIX_ZHX:0.722363737245;NKX2-2,8:0.714467992988;POU2F1..3:0.689780455998;NKX2-3_NKX2-5:0.678940697504;AIRE:0.66302334529;TOPORS:0.646890270054;TEAD1:0.641139906368;PDX1:0.631464549637;OCT4_SOX2{dimer}:0.53117362696;RXR{A,B,G}:0.509602446108;SMAD1..7,9:0.491464578709;NKX6-1,2:0.489064087941;ESRRA:0.476992713019;STAT5{A,B}:0.438737450161;CDC5L:0.422693399535;YY1:0.420347346293;IRF1,2:0.418196601267;GATA4:0.416251879794;NFIL3:0.410682783608;ZNF384:0.404000949745;KLF4:0.385722488832;FOXO1,3,4:0.347695998961;FOS_FOS{B,L1}_JUN{B,D}:0.3460341591;ZBTB6:0.345143355093;RFX2..5_RFXANK_RFXAP:0.327417868612;TFDP1:0.304852446393;IKZF1:0.29036665216;FOX{I1,J2}:0.288863176158;ELK1,4_GABP{A,B1}:0.268524081433;TEF:0.264736365649;GZF1:0.255252289252;GLI1..3:0.251766849103;HSF1,2:0.236965880094;TBP:0.225974834481;HMX1:0.215989663872;POU6F1:0.188224197909;BACH2:0.177045572105;HOX{A4,D4}:0.142131456654;NR5A1,2:0.138839146235;HAND1,2:0.109067454878;POU1F1:0.10613307545;HLF:0.0825364059776;PAX2:0.06737734928;LHX3,4:0.0663123279532;ZNF423:0.0556907506511;MTF1:0.0449449766831;TLX1..3_NFIC{dimer}:0.0324843799534;HNF4A_NR2F1,2:0.0266482660962;NFIX:0.0212395912351;FOXP3:-0.00705525966111;CUX2:-0.0236399382334;MAFB:-0.0258508892584;FOXN1:-0.0274322472895;PRDM1:-0.0489879265331;TFAP2{A,C}:-0.0597081970303;ALX1:-0.0601875113862;NKX3-1:-0.0676784461675;NFE2:-0.0798303233645;MYB:-0.0892400717166;NR1H4:-0.0930648014935;FOSL2:-0.102968356902;CEBPA,B_DDIT3:-0.111868539117;SOX17:-0.127429438622;ALX4:-0.129256911007;EP300:-0.131718232993;NFKB1_REL_RELA:-0.134946931901;IKZF2:-0.151314323817;GFI1B:-0.156263813045;XCPE1{core}:-0.163448827604;ZNF148:-0.165912392548;MED-1{core}:-0.18187392514;ZNF143:-0.190451543106;T:-0.1912194093;PAX3,7:-0.202914407002;ESR1:-0.204509804279;HNF1A:-0.208256259904;FOX{F1,F2,J1}:-0.220175759031;ELF1,2,4:-0.248023401907;TAL1_TCF{3,4,12}:-0.24946072098;AR:-0.250016587196;TFCP2:-0.256036247816;LEF1_TCF7_TCF7L1,2:-0.260669809496;GFI1:-0.266687117363;MAZ:-0.274335157295;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.277336749041;EVI1:-0.277827996617;RREB1:-0.281546185655;BPTF:-0.293400304671;NFY{A,B,C}:-0.304924495253;STAT2,4,6:-0.332320722585;FOXP1:-0.347744889197;GTF2I:-0.353981471075;LMO2:-0.357247227841;ATF5_CREB3:-0.360111073547;TLX2:-0.363263276434;SOX{8,9,10}:-0.368592774382;NR3C1:-0.392204724672;ATF4:-0.400054834252;ZNF238:-0.413306562345;MYFfamily:-0.414430416192;MZF1:-0.418590218035;HOX{A5,B5}:-0.433235987165;NANOG:-0.437757770833;HIF1A:-0.43926859655;SOX2:-0.452929252503;NFE2L2:-0.457107869596;SPIB:-0.458442306642;NRF1:-0.465288655145;ETS1,2:-0.467525217559;NKX3-2:-0.469302069572;SREBF1,2:-0.472290412106;CRX:-0.478153701782;SPI1:-0.479458409623;NFE2L1:-0.489958437832;PBX1:-0.501004418111;RFX1:-0.504235540346;REST:-0.509440011635;BREu{core}:-0.528508674896;FOX{D1,D2}:-0.534241738916;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.555385237645;POU5F1:-0.564477320124;POU3F1..4:-0.572811046369;MYBL2:-0.576072584059;GATA6:-0.581303244372;EBF1:-0.58726503116;ZFP161:-0.601812316559;PAX8:-0.615395004669;RUNX1..3:-0.62931015045;RORA:-0.646843057201;ATF2:-0.653584675097;EGR1..3:-0.656113185261;MEF2{A,B,C,D}:-0.678103456376;HES1:-0.684097615727;AHR_ARNT_ARNT2:-0.684109917275;HOX{A6,A7,B6,B7}:-0.685816274527;SP1:-0.700481166053;GTF2A1,2:-0.714475321435;EN1,2:-0.740234667044;PRRX1,2:-0.758958305885;SOX5:-0.784313849607;FOXA2:-0.789822848367;HMGA1,2:-0.807167264936;TGIF1:-0.831431091017;HIC1:-0.841493295574;DMAP1_NCOR{1,2}_SMARC:-0.864716075032;PATZ1:-0.886503042106;NHLH1,2:-0.892631671059;RXRA_VDR{dimer}:-0.900418398226;MTE{core}:-0.905765449535;TFAP2B:-0.916570618955;SRF:-0.932949416925;CREB1:-0.944688830366;TFAP4:-0.951199607848;PAX5:-0.971755977647;XBP1:-0.99868414237;FOXL1:-1.03791535276;JUN:-1.03827667373;DBP:-1.09374427176;SPZ1:-1.20126956009;NFATC1..3:-1.21297841589;STAT1,3:-1.2726291975;ATF6:-1.51677820935;NANOG{mouse}:-1.53409897422;HBP1_HMGB_SSRP1_UBTF:-1.56806652161
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10545-107H5;search_select_hide=table117:FF:10545-107H5
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:oral squamous cell carcinoma cell line:HSC-3
Species:Human (Homo sapiens)
Library ID:CNhs11717
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetongue
dev stageNA
sexmale
age64
cell typeunclassifiable
cell lineHSC-3
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005321
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11717 CAGE DRX007974 DRR008846
Accession ID Hg19

Library idBAMCTSS
CNhs11717 DRZ000271 DRZ001656
Accession ID Hg38

Library idBAMCTSS
CNhs11717 DRZ011621 DRZ013006
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.195
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.277
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00775
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.306
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0571
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.595
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.879
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0731
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.324
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0731
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0217
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.136
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0731
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.221
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.19
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0546
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11717

Jaspar motifP-value
MA0002.20.289
MA0003.10.864
MA0004.10.829
MA0006.10.171
MA0007.10.437
MA0009.10.0449
MA0014.10.883
MA0017.10.416
MA0018.22.20961e-5
MA0019.10.647
MA0024.10.283
MA0025.10.432
MA0027.10.438
MA0028.10.788
MA0029.10.46
MA0030.10.0761
MA0031.10.169
MA0035.20.711
MA0038.10.00323
MA0039.20.933
MA0040.10.0965
MA0041.10.434
MA0042.10.207
MA0043.11.77572e-4
MA0046.10.162
MA0047.20.336
MA0048.10.622
MA0050.10.00389
MA0051.10.0624
MA0052.10.0021
MA0055.10.406
MA0057.10.421
MA0058.10.735
MA0059.10.553
MA0060.15.36407e-5
MA0061.10.536
MA0062.20.0938
MA0065.20.0042
MA0066.10.0584
MA0067.10.00323
MA0068.10.00397
MA0069.10.263
MA0070.10.336
MA0071.10.478
MA0072.10.252
MA0073.10.398
MA0074.10.477
MA0076.10.271
MA0077.10.468
MA0078.10.761
MA0079.20.24
MA0080.25.28315e-6
MA0081.10.0212
MA0083.10.00216
MA0084.10.321
MA0087.10.604
MA0088.10.322
MA0090.10.0285
MA0091.10.371
MA0092.11
MA0093.10.79
MA0099.20.119
MA0100.10.326
MA0101.10.162
MA0102.20.13
MA0103.16.49669e-6
MA0104.20.646
MA0105.13.52174e-4
MA0106.14.57307e-7
MA0107.10.171
MA0108.20.0021
MA0111.10.21
MA0112.20.00185
MA0113.10.565
MA0114.10.145
MA0115.10.943
MA0116.10.00163
MA0117.10.564
MA0119.10.0246
MA0122.10.648
MA0124.10.0157
MA0125.10.623
MA0131.10.469
MA0135.10.333
MA0136.13.67249e-4
MA0137.20.0363
MA0138.20.595
MA0139.10.143
MA0140.10.831
MA0141.10.474
MA0142.15.67593e-4
MA0143.10.342
MA0144.10.971
MA0145.10.162
MA0146.10.401
MA0147.10.653
MA0148.10.27
MA0149.10.0773
MA0150.10.769
MA0152.10.314
MA0153.10.614
MA0154.10.0156
MA0155.10.987
MA0156.10.00892
MA0157.10.621
MA0159.10.0638
MA0160.10.834
MA0162.10.219
MA0163.12.46752e-6
MA0164.10.909
MA0258.10.196
MA0259.10.912



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11717

Novel motifP-value
10.159
100.148
1000.23
1010.641
1020.297
1030.0862
1040.605
1050.587
1060.0251
1070.00702
1080.191
1090.0153
110.224
1100.0337
1110.628
1120.0708
1130.104
1140.0917
1150.753
1160.572
1170.0213
1180.312
1190.264
120.182
1200.0246
1210.402
1220.965
1230.447
1240.0793
1250.418
1260.551
1270.654
1280.568
1290.087
130.0442
1300.972
1310.251
1320.308
1330.024
1340.0157
1350.89
1360.133
1370.227
1380.0304
1390.862
140.906
1400.934
1410.0455
1420.93
1430.0531
1440.96
1450.152
1460.57
1470.434
1480.868
1490.203
150.489
1500.279
1510.408
1520.463
1530.947
1540.988
1550.49
1560.701
1570.875
1580.25
1590.625
160.0249
1600.0885
1610.0591
1620.159
1630.717
1640.0877
1650.0941
1660.66
1670.152
1680.171
1690.0119
170.102
180.235
190.683
20.267
200.998
210.11
220.803
230.775
240.0783
250.455
260.182
270.531
280.496
290.0332
30.205
300.596
310.758
320.605
330.219
340.469
350.431
360.581
370.52
380.354
390.586
40.973
400.351
410.273
420.539
430.477
440.00292
450.372
460.0865
470.138
480.175
490.79
50.832
500.778
510.604
520.364
530.889
540.675
550.167
560.418
570.0425
580.277
590.125
60.783
600.0731
610.914
620.273
630.191
640.396
650.326
660.836
670.728
680.127
690.137
70.161
700.024
710.0197
720.444
730.407
740.274
750.0516
760.491
770.225
780.0112
790.644
80.119
800.061
810.384
820.942
830.708
840.257
850.619
860.344
870.0839
880.431
890.0371
90.713
900.74
910.708
920.42
930.542
940.913
950.63
960.891
970.94
980.953
990.309



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11717


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)
0102025 (HSC-3 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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