FF:10509-107D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005401 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007911;DRR008783;DRZ000208;DRZ001593;DRZ011558;DRZ012943 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:3905,DOID:3908,DOID:4556 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0101120,FF:0100762,FF:0102205 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/large%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aIA-LM.CNhs11277.10509-107D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10509-107D5 | |id=FF:10509-107D5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102205 | ||
|is_obsolete= | |||
|library_id=CNhs11277 | |||
|library_id_phase_based=2:CNhs11277 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10509 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10509 | |||
|name=large cell lung carcinoma cell line:IA-LM | |name=large cell lung carcinoma cell line:IA-LM | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11277,LSID759,release008,COMPLETED | |profile_hcage=CNhs11277,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0217990811097156,0,0,0,0,0.0238058023877119,0.0832161034844002,-0.231235135986659,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.367608329436762,0,-0.0543597340486264,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.412293357707597,0,-0.19785342123991,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.00388518052735414,0.0435981622194311,-0.0137762577582049,0,0,0.086780205261001,0,0,0,0,0,0,0,0,0.11952015083098,0,0.0435981622194311,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00425495833420442,0,0,0,-0.0584468268118252,-0.189398321586153,0.0217990811097156,0,0.0983101584183586,0,0.0214847995932734,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.021745535128382,0.0435981622194311,0,0,-0.0905831420226243,-0.273625576185049,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0214847995932734,0,0,0,0.153022154617286,0,0,0,0,0,0,0,-0.127658724454585,0.186915612191051,0.0039614676403355,0.0696311190035121,0,0,-0.0267325580248323,0,0.24035011496609,0,0,0,0,0,0,0,0.0249022876647215,0,-0.00681438936988379,0,0,0,0,0,-0.222256127414007,0,0.00348724207456607,0.014871842407032,0,0,0,0,-0.210480593918835,0,0.145070439931448,-0.0391220061039862,-0.00846532657582275,-0.662695227856985,0.0519751096542091,0,0,0,-0.532047632837109,0.287386370284656,0,0,-0.0402206952266684,-0.00360431533658301,0,0,-0.391044581551635,0,0.0690876101300352,-0.120970438616045,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.270356536546129,0,0,0.0435981622194311,0,-0.0406703577192478,0,0,-0.060262334794798,0.0204923861822218,0.0354761444821022,0.318188513889975,0,-0.302389727009913,-0.0873155792121343,-0.566570038691445,0.168719567398237,-0.147401849371139,-0.189981719549847,0,0.276356337271364,-0.166343866891083,0,0.165238455077882,-0.0302447930437535,-0.569556894899226,0.0123019462808096,0,0,0,-0.19162137639932,0,0.0586583602274837,0.27760614477017,0.13134275592417,0.0674965994826732,-0.363079123224822,-0.0100503568976878,0.146673652133958,0.209041298361263,-0.244290191369611,-0.0261038355739019,-0.164726136498738,0,0,-0.0773125720212107,-0.00945666394464759,0.04710862066218,-0.0806830391343916,-0.0249490225887554,-0.00592977541863676,-0.0683442610773682,0.141974138592761,-0.197975566721974,-0.112441681511741,0,0,0.172995549016419,0,0,0,0,0.0832161034844002,-0.00165331205289809,-0.419971992199186,-0.0798334069382586,0,0.125825227145591,0.0217990811097156,-0.100199967363115,0,-0.00423924063294445,0.0637791621143832,-0.0627903583836229,-0.249035642376805,0,0.0520018756336315,-0.0449177131449889,0.100959227386186,-0.378796643172306,-0.0584468268118252,-0.00377619412631447,-0.625164548265925,0.173024211533172,-0.227837477375014,0.0590231424090313,-0.0881268324752877,0,-0.0855839431798665,-0.679498131621524,-0.0703381217224206,-0.0417999917406436,0.0688441262243892,-0.0498767830637685,0,0.0493224400430052,0,-0.170830794339581,-0.0623860650808962,-0.395691212361255,-0.0400858952407057,0,0.149746318572864,-0.744532775554543,0,0,0,1.01253478357551,0.243805142644304,-0.0889122396829092,-0.211650427864589,-0.0194693058482147,0,0.0292543332522549,0,0,-0.0796886264173855,-0.191877875544958,0.0435981622194311,0.0119899387543681,-0.1016699071083,-0.082658594483843,-0.0327549699505338,0.0832161034844002,0,-0.0601032404446579,0,0,-0.562329901598599,0,0.519391531457052,-0.0401800799597717,0.0700396535827325,-0.0321117321456125,0,0,-0.0245056113478894,0.0435981622194311,0.042613968678102,0,0,0.092615708516666,0,0,0,0,0.0217990811097156,0,-0.0548835034154425,0,0,0,0,0,0.0209773287997759,-0.0200572548151594,0,0.0641502851203983,0,0,0,0,0.0435981622194311,-0.0443804566061897,0,0,0.744456771347807,0.0191807331299691,-0.0794192534569892,0.0983101584183586,0,0.0217990811097156,0,0.0973004186082942,-0.120020458610324,0,0.181161114664137,0,0,0.11952015083098,0,-0.00292488630481111,0,0,0.0217990811097156,0.0217990811097156,-0.057730457053664,-0.291824445642417,0,0,0,-0.27695440160179,0,0,0,0,0.0447232144420564,0,0,0.0435981622194311,0,-0.284155279231902,0.466734811386727,0.00298630374731937,-0.277716014431778,-0.542175536014174,0.545575397402505,0,0,0.15094622591771,0,0.0217990811097156,0.0931278311028614,0,0,0.345543627614775,0,0,0,0,0,0.0435981622194311,0.346787875015457,0.0217990811097156,0,0,0,0,0,0,0,0,0,0.153022154617286,-0.088400815486696,-0.0486258944390793,0.24035011496609,0,0,0,0,0,0,0.310300577437331,0.0089977475977385,0,0,0,0,0,0.11952015083098,0,0,0.0216145879112425,0,0,0,0,0,-0.0137762577582049,0,0,0,0.0435981622194311,-0.564807121153884,0,0,0.09789980220262,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0608047464386503,-0.269003507347178,0,0.0435981622194311,0,0,0,0.0832161034844002,0,-0.231235135986659,0,0,0,0,-0.030668270224577,0,0,0,0.289375841189787,0,0.0238058023877119,0,0,0,0,0,0.0435981622194311,0.106573130763492,0,0,0.0435981622194311,0,0,0,0,0,0,0,0.0217990811097156,0,0,0,0.278421719465733,0,-0.0740612544459258,-0.0069898606119232,0,0,-0.00136900581850846,0,0,0,0,0.0832161034844002,0,-0.031340424028527,0,0,0,0,0,0,0,0.0217990811097156,0,0,0,0,0,0,0,0,0,0,0.0435981622194311,0,0,0,0,0,0,0.123033543448902,0,0,0,0,0,0,0,-0.0543597340486264,0,0,0.253100531124194,0,0,0,0,0,0,0.0580230745003277,-0.0643352057239601,-0.0307993219186099,0,0,0,0.0792843954967941,0,0,-0.00503234941769137,0.0435981622194311,0.199172536306287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394172225978943,0,0.0435981622194311,0,0,0,0,0,0,0,0.0293957695764991,0.0435981622194311,0,0,0,0,0,0,0.153022154617286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.142404376791108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.252406712333108,0,0,0,0,0,0,0,0,0.412293357707597,0,0,0,0,-0.0482220752390542,0,-0.04077847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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=47.79725 | |rna_weight_ug=47.79725 | ||
|sample_age=68 | |sample_age=68 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0554 | |sample_cell_catalog=RCB0554 | ||
|sample_cell_line=IA-LM | |sample_cell_line=IA-LM | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.98155559529362e-261!GO:0043226;organelle;2.04605240708489e-222!GO:0043229;intracellular organelle;7.0052048491696e-222!GO:0043231;intracellular membrane-bound organelle;1.0020823247643e-221!GO:0043227;membrane-bound organelle;1.47434050802968e-221!GO:0005737;cytoplasm;2.48311849872211e-162!GO:0044422;organelle part;3.6098039324482e-131!GO:0044446;intracellular organelle part;1.06357186992081e-129!GO:0005634;nucleus;5.72184929783584e-112!GO:0044444;cytoplasmic part;3.69942554711326e-111!GO:0044238;primary metabolic process;2.54066485636605e-110!GO:0043170;macromolecule metabolic process;2.54799252963166e-110!GO:0044237;cellular metabolic process;3.44005383479924e-107!GO:0032991;macromolecular complex;1.44189685289535e-92!GO:0030529;ribonucleoprotein complex;1.94315283479488e-87!GO:0044428;nuclear part;8.49338710583909e-85!GO:0003723;RNA binding;9.0656189767527e-85!GO:0043233;organelle lumen;1.66291203886166e-83!GO:0031974;membrane-enclosed lumen;1.66291203886166e-83!GO:0005515;protein binding;6.62065466728174e-78!GO:0010467;gene expression;8.13174263054927e-78!GO:0043283;biopolymer metabolic process;1.27346137950454e-76!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.03420435036109e-66!GO:0006396;RNA processing;8.00648264191128e-58!GO:0031981;nuclear lumen;4.59555199306863e-57!GO:0006412;translation;1.2675985039395e-53!GO:0005739;mitochondrion;8.04307932248004e-53!GO:0019538;protein metabolic process;1.65565109594938e-52!GO:0005840;ribosome;1.38366043023978e-51!GO:0003676;nucleic acid binding;1.72996304714457e-50!GO:0015031;protein transport;2.18608463906886e-47!GO:0044267;cellular protein metabolic process;4.01011428397285e-47!GO:0044260;cellular macromolecule metabolic process;5.21887493563995e-47!GO:0033036;macromolecule localization;1.00987510032479e-46!GO:0016043;cellular component organization and biogenesis;4.21839572017216e-46!GO:0016070;RNA metabolic process;4.21839572017216e-46!GO:0031090;organelle membrane;4.79393244916109e-45!GO:0003735;structural constituent of ribosome;1.28176693237539e-44!GO:0043234;protein complex;5.45115096326473e-44!GO:0045184;establishment of protein localization;5.56007823062802e-43!GO:0016071;mRNA metabolic process;4.93781710600788e-42!GO:0008104;protein localization;6.31612908697979e-42!GO:0033279;ribosomal subunit;3.51336123710551e-39!GO:0009059;macromolecule biosynthetic process;4.8655866829239e-39!GO:0008380;RNA splicing;2.71441464950336e-38!GO:0006397;mRNA processing;1.82053555486798e-36!GO:0044429;mitochondrial part;8.44389880229645e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.30039983855123e-35!GO:0005654;nucleoplasm;6.54465857181362e-35!GO:0044249;cellular biosynthetic process;1.17442632438354e-34!GO:0009058;biosynthetic process;3.52841073459408e-34!GO:0005829;cytosol;7.74278798373647e-34!GO:0031967;organelle envelope;1.98855436710074e-33!GO:0046907;intracellular transport;2.22365320630044e-33!GO:0031975;envelope;3.2317611774852e-33!GO:0006886;intracellular protein transport;1.21819628491006e-30!GO:0044451;nucleoplasm part;8.16835680301107e-30!GO:0065003;macromolecular complex assembly;1.94617322607955e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.33534185735661e-29!GO:0006996;organelle organization and biogenesis;7.23214512152255e-28!GO:0022607;cellular component assembly;8.06932033629917e-27!GO:0000166;nucleotide binding;2.24216892235993e-26!GO:0005681;spliceosome;5.83132368426005e-26!GO:0043228;non-membrane-bound organelle;1.19569177776911e-25!GO:0043232;intracellular non-membrane-bound organelle;1.19569177776911e-25!GO:0005730;nucleolus;1.55764821824804e-24!GO:0006512;ubiquitin cycle;3.94909291883027e-24!GO:0044445;cytosolic part;5.88310937867062e-23!GO:0016874;ligase activity;3.54994812132794e-22!GO:0006259;DNA metabolic process;5.60998619713543e-22!GO:0005740;mitochondrial envelope;1.58065820037084e-21!GO:0051649;establishment of cellular localization;2.0555216072134e-21!GO:0008134;transcription factor binding;3.36837584905935e-21!GO:0051641;cellular localization;5.88303289179504e-21!GO:0006457;protein folding;6.749135890198e-21!GO:0016462;pyrophosphatase activity;1.56459198338728e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;1.66634246779814e-20!GO:0015934;large ribosomal subunit;1.7347124093766e-20!GO:0050794;regulation of cellular process;1.74403257671026e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.6080048678279e-20!GO:0019941;modification-dependent protein catabolic process;3.0199634700391e-20!GO:0043632;modification-dependent macromolecule catabolic process;3.0199634700391e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.47140891108539e-20!GO:0031966;mitochondrial membrane;3.47140891108539e-20!GO:0012505;endomembrane system;4.18355723067677e-20!GO:0044257;cellular protein catabolic process;5.80926903965043e-20!GO:0017111;nucleoside-triphosphatase activity;5.90399963355173e-20!GO:0006511;ubiquitin-dependent protein catabolic process;7.72577791967685e-20!GO:0044265;cellular macromolecule catabolic process;1.17007352609173e-19!GO:0015935;small ribosomal subunit;1.3524732797322e-19!GO:0022618;protein-RNA complex assembly;1.4156966368231e-19!GO:0019866;organelle inner membrane;1.76660426835195e-19!GO:0043285;biopolymer catabolic process;6.25566260705355e-19!GO:0019222;regulation of metabolic process;2.15577755045456e-18!GO:0005743;mitochondrial inner membrane;5.35573986091638e-18!GO:0043412;biopolymer modification;9.49444612716371e-18!GO:0008135;translation factor activity, nucleic acid binding;1.31762354012368e-17!GO:0032553;ribonucleotide binding;2.10022783464161e-17!GO:0032555;purine ribonucleotide binding;2.10022783464161e-17!GO:0006119;oxidative phosphorylation;2.27587286484353e-17!GO:0017076;purine nucleotide binding;4.16205600376375e-17!GO:0031980;mitochondrial lumen;1.05487320441524e-16!GO:0005759;mitochondrial matrix;1.05487320441524e-16!GO:0048770;pigment granule;1.24088999502663e-16!GO:0042470;melanosome;1.24088999502663e-16!GO:0042254;ribosome biogenesis and assembly;1.77207085344955e-16!GO:0009057;macromolecule catabolic process;2.13096272025572e-16!GO:0006605;protein targeting;2.53761435926583e-16!GO:0030163;protein catabolic process;6.71553375603197e-16!GO:0006464;protein modification process;1.44992039609586e-15!GO:0000502;proteasome complex (sensu Eukaryota);2.01766918143428e-15!GO:0044455;mitochondrial membrane part;2.57879945634786e-15!GO:0004386;helicase activity;3.77347942242721e-15!GO:0005794;Golgi apparatus;4.02520364407431e-15!GO:0006350;transcription;5.05725706882146e-15!GO:0031323;regulation of cellular metabolic process;5.07664758315678e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.08483978264222e-15!GO:0051082;unfolded protein binding;1.28251748072165e-14!GO:0048193;Golgi vesicle transport;1.56340430843595e-14!GO:0050789;regulation of biological process;1.73398121019246e-14!GO:0003712;transcription cofactor activity;2.03536189486494e-14!GO:0044432;endoplasmic reticulum part;3.06170803484318e-14!GO:0007049;cell cycle;3.45807812577076e-14!GO:0005524;ATP binding;3.53051358710765e-14!GO:0006366;transcription from RNA polymerase II promoter;4.35266143870087e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.24229210991609e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;6.99403555402581e-14!GO:0000375;RNA splicing, via transesterification reactions;6.99403555402581e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.99403555402581e-14!GO:0005783;endoplasmic reticulum;7.05828682694737e-14!GO:0043687;post-translational protein modification;7.78121132263216e-14!GO:0032559;adenyl ribonucleotide binding;7.8805911151077e-14!GO:0016604;nuclear body;7.90322482773336e-14!GO:0006913;nucleocytoplasmic transport;1.07533195482323e-13!GO:0008639;small protein conjugating enzyme activity;1.44443391850769e-13!GO:0030554;adenyl nucleotide binding;1.98386904632401e-13!GO:0044248;cellular catabolic process;2.44001462020348e-13!GO:0006399;tRNA metabolic process;2.61276719626006e-13!GO:0031965;nuclear membrane;2.757485118964e-13!GO:0004842;ubiquitin-protein ligase activity;2.86322238238448e-13!GO:0051169;nuclear transport;2.89614502937935e-13!GO:0010468;regulation of gene expression;2.95944727427098e-13!GO:0005761;mitochondrial ribosome;2.95944727427098e-13!GO:0000313;organellar ribosome;2.95944727427098e-13!GO:0016192;vesicle-mediated transport;3.94322308745826e-13!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.85145167483384e-13!GO:0008026;ATP-dependent helicase activity;7.96882317463282e-13!GO:0019787;small conjugating protein ligase activity;8.41182601877943e-13!GO:0003743;translation initiation factor activity;8.73929817109527e-13!GO:0044453;nuclear membrane part;9.50705857264741e-13!GO:0005635;nuclear envelope;1.01242812137178e-12!GO:0005746;mitochondrial respiratory chain;1.21653019813183e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.00360899681121e-12!GO:0032774;RNA biosynthetic process;2.73033294567424e-12!GO:0006351;transcription, DNA-dependent;2.98675459292543e-12!GO:0006413;translational initiation;3.10948363235444e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.0807327846294e-12!GO:0050136;NADH dehydrogenase (quinone) activity;6.52565701358556e-12!GO:0003954;NADH dehydrogenase activity;6.52565701358556e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.52565701358556e-12!GO:0016607;nuclear speck;9.04049717772978e-12!GO:0005643;nuclear pore;1.06838759551786e-11!GO:0006403;RNA localization;1.28528611201905e-11!GO:0006974;response to DNA damage stimulus;2.18815231857165e-11!GO:0050657;nucleic acid transport;2.50530047606857e-11!GO:0051236;establishment of RNA localization;2.50530047606857e-11!GO:0050658;RNA transport;2.50530047606857e-11!GO:0016881;acid-amino acid ligase activity;3.13764695822718e-11!GO:0045449;regulation of transcription;3.96171128478843e-11!GO:0006364;rRNA processing;4.42152094615198e-11!GO:0016072;rRNA metabolic process;5.69461062068747e-11!GO:0017038;protein import;5.91190877674458e-11!GO:0006446;regulation of translational initiation;6.89025748116634e-11!GO:0042623;ATPase activity, coupled;6.97496899705722e-11!GO:0016887;ATPase activity;7.66982235163267e-11!GO:0051186;cofactor metabolic process;1.46755901765752e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.55610221236263e-10!GO:0042773;ATP synthesis coupled electron transport;1.55610221236263e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.05364839522772e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.54220168056041e-10!GO:0045271;respiratory chain complex I;3.54220168056041e-10!GO:0005747;mitochondrial respiratory chain complex I;3.54220168056041e-10!GO:0065002;intracellular protein transport across a membrane;5.9395597818939e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.9395597818939e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.9395597818939e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.9395597818939e-10!GO:0012501;programmed cell death;7.25810994804478e-10!GO:0005789;endoplasmic reticulum membrane;7.80572411570701e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.81303371164757e-10!GO:0051276;chromosome organization and biogenesis;7.83934375108279e-10!GO:0006355;regulation of transcription, DNA-dependent;8.47292169119524e-10!GO:0006281;DNA repair;8.63089144336756e-10!GO:0006915;apoptosis;1.09434714352262e-09!GO:0022402;cell cycle process;1.11040452258104e-09!GO:0016568;chromatin modification;1.11040452258104e-09!GO:0016563;transcription activator activity;1.15383599272854e-09!GO:0006461;protein complex assembly;1.15601889309394e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.22504513578495e-09!GO:0065007;biological regulation;1.28204366766492e-09!GO:0005793;ER-Golgi intermediate compartment;1.28598393584651e-09!GO:0043038;amino acid activation;1.40587678922611e-09!GO:0006418;tRNA aminoacylation for protein translation;1.40587678922611e-09!GO:0043039;tRNA aminoacylation;1.40587678922611e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.77264678468125e-09!GO:0051028;mRNA transport;1.80834369183884e-09!GO:0008565;protein transporter activity;2.48608563356629e-09!GO:0046930;pore complex;3.31523604174646e-09!GO:0005667;transcription factor complex;3.61368795881348e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.15480927281799e-09!GO:0006323;DNA packaging;4.55759857391688e-09!GO:0032446;protein modification by small protein conjugation;6.57040977730392e-09!GO:0016567;protein ubiquitination;8.19199160945591e-09!GO:0008219;cell death;8.30721568401931e-09!GO:0016265;death;8.30721568401931e-09!GO:0048523;negative regulation of cellular process;1.59926283759344e-08!GO:0006732;coenzyme metabolic process;1.66914869743108e-08!GO:0009259;ribonucleotide metabolic process;2.39970190907063e-08!GO:0003713;transcription coactivator activity;2.39970190907063e-08!GO:0006163;purine nucleotide metabolic process;2.72440366097927e-08!GO:0005768;endosome;2.9270248860598e-08!GO:0051170;nuclear import;3.75967079580692e-08!GO:0008270;zinc ion binding;3.75967079580692e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.91295714198975e-08!GO:0000278;mitotic cell cycle;4.23630533289762e-08!GO:0003724;RNA helicase activity;5.48157927567875e-08!GO:0051246;regulation of protein metabolic process;5.81986339591777e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.8695384510118e-08!GO:0031324;negative regulation of cellular metabolic process;8.19747766006282e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.58651995263178e-08!GO:0006606;protein import into nucleus;9.20109762130467e-08!GO:0006164;purine nucleotide biosynthetic process;9.58828069517121e-08!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.41963243696777e-07!GO:0009150;purine ribonucleotide metabolic process;1.44790655532194e-07!GO:0009719;response to endogenous stimulus;1.72100324838682e-07!GO:0009260;ribonucleotide biosynthetic process;1.96633851498777e-07!GO:0000151;ubiquitin ligase complex;2.02795645229667e-07!GO:0016564;transcription repressor activity;2.54806326769298e-07!GO:0003924;GTPase activity;2.64896451055683e-07!GO:0044431;Golgi apparatus part;3.18109562049069e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.68006365576416e-07!GO:0051726;regulation of cell cycle;3.68006365576416e-07!GO:0016779;nucleotidyltransferase activity;3.83262015138552e-07!GO:0009141;nucleoside triphosphate metabolic process;4.651453271733e-07!GO:0006260;DNA replication;4.73269548127229e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.81964658815019e-07!GO:0009056;catabolic process;5.0292997762562e-07!GO:0009152;purine ribonucleotide biosynthetic process;5.17249882183251e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.21857982676494e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.21857982676494e-07!GO:0000074;regulation of progression through cell cycle;5.24412364035586e-07!GO:0043566;structure-specific DNA binding;5.51757801600647e-07!GO:0030120;vesicle coat;5.60165744533078e-07!GO:0030662;coated vesicle membrane;5.60165744533078e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.50939602543283e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.50939602543283e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.81473331760329e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.81473331760329e-07!GO:0048519;negative regulation of biological process;8.30507733638089e-07!GO:0000245;spliceosome assembly;9.53236248722566e-07!GO:0009055;electron carrier activity;1.07003289006883e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.11670794100388e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.11670794100388e-06!GO:0003714;transcription corepressor activity;1.1579914404716e-06!GO:0016740;transferase activity;1.19545006307977e-06!GO:0003677;DNA binding;1.28944216020494e-06!GO:0007005;mitochondrion organization and biogenesis;1.29960026271331e-06!GO:0009892;negative regulation of metabolic process;1.32922325258321e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.80594754691043e-06!GO:0015986;ATP synthesis coupled proton transport;1.9419637896342e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.9419637896342e-06!GO:0051427;hormone receptor binding;2.05805910981893e-06!GO:0048475;coated membrane;2.21974481260696e-06!GO:0030117;membrane coat;2.21974481260696e-06!GO:0042981;regulation of apoptosis;2.23020352247419e-06!GO:0005788;endoplasmic reticulum lumen;2.35450813367076e-06!GO:0016481;negative regulation of transcription;2.46739029308905e-06!GO:0043067;regulation of programmed cell death;2.5282734460924e-06!GO:0051188;cofactor biosynthetic process;2.9387983732506e-06!GO:0003697;single-stranded DNA binding;2.97444887702181e-06!GO:0044440;endosomal part;3.3300512442409e-06!GO:0010008;endosome membrane;3.3300512442409e-06!GO:0046914;transition metal ion binding;3.64157160471634e-06!GO:0008186;RNA-dependent ATPase activity;3.68442202382386e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.02459016266073e-06!GO:0035257;nuclear hormone receptor binding;4.49637675590617e-06!GO:0006793;phosphorus metabolic process;5.32364687631436e-06!GO:0006796;phosphate metabolic process;5.32364687631436e-06!GO:0009060;aerobic respiration;5.60655211944549e-06!GO:0019829;cation-transporting ATPase activity;5.69496500576519e-06!GO:0031988;membrane-bound vesicle;6.2313805673303e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.27782016857771e-06!GO:0005694;chromosome;6.30432518156733e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.79896652231224e-06!GO:0006613;cotranslational protein targeting to membrane;6.86667656421453e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.7704221536747e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.49230101436429e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.40715114242563e-06!GO:0043623;cellular protein complex assembly;9.4423046973506e-06!GO:0005525;GTP binding;9.81338694337539e-06!GO:0045333;cellular respiration;1.02018662848669e-05!GO:0046034;ATP metabolic process;1.08139158995211e-05!GO:0044452;nucleolar part;1.09699037247369e-05!GO:0004004;ATP-dependent RNA helicase activity;1.18682055875838e-05!GO:0006752;group transfer coenzyme metabolic process;1.33186451126257e-05!GO:0003899;DNA-directed RNA polymerase activity;1.42549258123233e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.46188988748354e-05!GO:0006754;ATP biosynthetic process;1.50146559851547e-05!GO:0006753;nucleoside phosphate metabolic process;1.50146559851547e-05!GO:0045259;proton-transporting ATP synthase complex;1.63519514250508e-05!GO:0000139;Golgi membrane;1.75044546252538e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.22419839920423e-05!GO:0051168;nuclear export;2.46208268816339e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.48783356653304e-05!GO:0031982;vesicle;2.86466125438414e-05!GO:0022403;cell cycle phase;3.17866605666699e-05!GO:0008033;tRNA processing;3.29829385165239e-05!GO:0006402;mRNA catabolic process;3.6116834010802e-05!GO:0031410;cytoplasmic vesicle;4.27049068149773e-05!GO:0031252;leading edge;4.30033499168612e-05!GO:0065004;protein-DNA complex assembly;4.32491923157766e-05!GO:0016310;phosphorylation;4.66325142523381e-05!GO:0006352;transcription initiation;4.68389526042071e-05!GO:0009108;coenzyme biosynthetic process;5.13098181975975e-05!GO:0005770;late endosome;5.48903298505629e-05!GO:0043069;negative regulation of programmed cell death;5.58305139390212e-05!GO:0005762;mitochondrial large ribosomal subunit;5.79208181267261e-05!GO:0000315;organellar large ribosomal subunit;5.79208181267261e-05!GO:0000087;M phase of mitotic cell cycle;6.29261202101863e-05!GO:0000059;protein import into nucleus, docking;6.29261202101863e-05!GO:0009117;nucleotide metabolic process;6.88101937104679e-05!GO:0019899;enzyme binding;6.95306983956e-05!GO:0051301;cell division;6.98013234472232e-05!GO:0043066;negative regulation of apoptosis;7.4537009252632e-05!GO:0043021;ribonucleoprotein binding;7.47936292481378e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;7.67225578111374e-05!GO:0007067;mitosis;8.78599485702235e-05!GO:0045786;negative regulation of progression through cell cycle;9.28780093501322e-05!GO:0003690;double-stranded DNA binding;0.000101746846017794!GO:0032561;guanyl ribonucleotide binding;0.000104202985689243!GO:0019001;guanyl nucleotide binding;0.000104202985689243!GO:0004298;threonine endopeptidase activity;0.000106034354735187!GO:0008654;phospholipid biosynthetic process;0.000106070532368215!GO:0003729;mRNA binding;0.000114282704167436!GO:0016859;cis-trans isomerase activity;0.000142340945063791!GO:0000314;organellar small ribosomal subunit;0.000152568980630615!GO:0005763;mitochondrial small ribosomal subunit;0.000152568980630615!GO:0045454;cell redox homeostasis;0.000156844122981695!GO:0007243;protein kinase cascade;0.000160686816881769!GO:0005798;Golgi-associated vesicle;0.00017499721155336!GO:0030867;rough endoplasmic reticulum membrane;0.000176598825680956!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000179503395195485!GO:0015630;microtubule cytoskeleton;0.000180937886648849!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000187275497353405!GO:0006916;anti-apoptosis;0.000187275497353405!GO:0031072;heat shock protein binding;0.000199498174495767!GO:0016251;general RNA polymerase II transcription factor activity;0.000203093649022315!GO:0005813;centrosome;0.000203243182918422!GO:0044427;chromosomal part;0.000207390542332802!GO:0051789;response to protein stimulus;0.000213810142797936!GO:0006986;response to unfolded protein;0.000213810142797936!GO:0016787;hydrolase activity;0.000226418492461336!GO:0006891;intra-Golgi vesicle-mediated transport;0.000234258994556817!GO:0045941;positive regulation of transcription;0.000272532266558036!GO:0007264;small GTPase mediated signal transduction;0.000320105376895513!GO:0006401;RNA catabolic process;0.000353578046093455!GO:0006612;protein targeting to membrane;0.000365160540551797!GO:0006383;transcription from RNA polymerase III promoter;0.000401606718632482!GO:0006099;tricarboxylic acid cycle;0.000407851924469136!GO:0046356;acetyl-CoA catabolic process;0.000407851924469136!GO:0045045;secretory pathway;0.000409853846094769!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000422629849250677!GO:0030036;actin cytoskeleton organization and biogenesis;0.000442570182695722!GO:0003702;RNA polymerase II transcription factor activity;0.000454667084762928!GO:0006414;translational elongation;0.000472827456455967!GO:0000049;tRNA binding;0.000485216283780119!GO:0005815;microtubule organizing center;0.000501632193434696!GO:0005048;signal sequence binding;0.000535934322544147!GO:0008250;oligosaccharyl transferase complex;0.000543472446859838!GO:0030880;RNA polymerase complex;0.000615941591526972!GO:0033116;ER-Golgi intermediate compartment membrane;0.000620957956901053!GO:0006084;acetyl-CoA metabolic process;0.000636204440835835!GO:0043681;protein import into mitochondrion;0.000721138511299446!GO:0006333;chromatin assembly or disassembly;0.000722099285738353!GO:0004674;protein serine/threonine kinase activity;0.000726469129601233!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000750337436777127!GO:0051329;interphase of mitotic cell cycle;0.00075112190801851!GO:0005773;vacuole;0.000812323946587709!GO:0009109;coenzyme catabolic process;0.000845311019042499!GO:0048522;positive regulation of cellular process;0.000884655955629758!GO:0051325;interphase;0.000999623116586494!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00103439885609119!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00103663314690341!GO:0000428;DNA-directed RNA polymerase complex;0.00103663314690341!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107350404134497!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00108886212337253!GO:0008361;regulation of cell size;0.00119876739066468!GO:0018196;peptidyl-asparagine modification;0.00120302201986268!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00120302201986268!GO:0005769;early endosome;0.00120302201986268!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00125496952637073!GO:0031625;ubiquitin protein ligase binding;0.00127441658944078!GO:0016363;nuclear matrix;0.00127918339174884!GO:0046966;thyroid hormone receptor binding;0.00129371140440179!GO:0045893;positive regulation of transcription, DNA-dependent;0.00130808026931209!GO:0006626;protein targeting to mitochondrion;0.00135450128974558!GO:0003711;transcription elongation regulator activity;0.00135981959520853!GO:0004576;oligosaccharyl transferase activity;0.00138793441779495!GO:0048500;signal recognition particle;0.00148530394672401!GO:0006338;chromatin remodeling;0.00159246199565926!GO:0016853;isomerase activity;0.00159460660904789!GO:0019867;outer membrane;0.00162413879923166!GO:0005905;coated pit;0.00164390060105874!GO:0005885;Arp2/3 protein complex;0.00165140930589012!GO:0045892;negative regulation of transcription, DNA-dependent;0.00165796401785859!GO:0003678;DNA helicase activity;0.00169744531792985!GO:0031968;organelle outer membrane;0.00171951031057187!GO:0048471;perinuclear region of cytoplasm;0.00171951031057187!GO:0003746;translation elongation factor activity;0.00176331714123665!GO:0019783;small conjugating protein-specific protease activity;0.00211480213530764!GO:0046474;glycerophospholipid biosynthetic process;0.00217100197256549!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0023204696282777!GO:0051187;cofactor catabolic process;0.00242869559435894!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00242869559435894!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00242869559435894!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00242869559435894!GO:0009116;nucleoside metabolic process;0.00250840603161982!GO:0051920;peroxiredoxin activity;0.00252260669255404!GO:0015980;energy derivation by oxidation of organic compounds;0.00253728582014199!GO:0006261;DNA-dependent DNA replication;0.00256062011804037!GO:0000323;lytic vacuole;0.00264859417512627!GO:0005764;lysosome;0.00264859417512627!GO:0033673;negative regulation of kinase activity;0.0027684491396084!GO:0006469;negative regulation of protein kinase activity;0.0027684491396084!GO:0016049;cell growth;0.00278713149974041!GO:0000785;chromatin;0.00278976348336322!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00286664900295028!GO:0030134;ER to Golgi transport vesicle;0.00290499086224304!GO:0004843;ubiquitin-specific protease activity;0.00294173562713325!GO:0005741;mitochondrial outer membrane;0.00307694426589325!GO:0051087;chaperone binding;0.00307694426589325!GO:0030029;actin filament-based process;0.0031312546592607!GO:0030521;androgen receptor signaling pathway;0.00319871151319278!GO:0008312;7S RNA binding;0.00319871151319278!GO:0030133;transport vesicle;0.00330462996878263!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00332697564002442!GO:0008168;methyltransferase activity;0.00353265657151895!GO:0016197;endosome transport;0.00359796274377696!GO:0051252;regulation of RNA metabolic process;0.0036061833046337!GO:0016741;transferase activity, transferring one-carbon groups;0.00365345872461142!GO:0006405;RNA export from nucleus;0.0038236131507733!GO:0000279;M phase;0.00387751932957885!GO:0004221;ubiquitin thiolesterase activity;0.00410705218577033!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0041806866988572!GO:0045047;protein targeting to ER;0.0041806866988572!GO:0007010;cytoskeleton organization and biogenesis;0.0041806866988572!GO:0016272;prefoldin complex;0.00427207790165191!GO:0003684;damaged DNA binding;0.00438040021038358!GO:0030127;COPII vesicle coat;0.00448104848144383!GO:0012507;ER to Golgi transport vesicle membrane;0.00448104848144383!GO:0009112;nucleobase metabolic process;0.00456986750563238!GO:0051348;negative regulation of transferase activity;0.00472920511650958!GO:0046483;heterocycle metabolic process;0.00477778034135613!GO:0030118;clathrin coat;0.00477883062820084!GO:0030132;clathrin coat of coated pit;0.00483748907412052!GO:0046489;phosphoinositide biosynthetic process;0.00490866849304319!GO:0005669;transcription factor TFIID complex;0.005085431323334!GO:0008139;nuclear localization sequence binding;0.005085431323334!GO:0006892;post-Golgi vesicle-mediated transport;0.00517916180244028!GO:0030658;transport vesicle membrane;0.00520258671647247!GO:0035258;steroid hormone receptor binding;0.00534733541474359!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00546602574076614!GO:0006354;RNA elongation;0.00586569064927784!GO:0006302;double-strand break repair;0.00592105731424747!GO:0008180;signalosome;0.00592963076713243!GO:0046467;membrane lipid biosynthetic process;0.00593967060620738!GO:0016790;thiolester hydrolase activity;0.00605289420671937!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00635672365266174!GO:0043284;biopolymer biosynthetic process;0.00646710679739335!GO:0006417;regulation of translation;0.00663277357980601!GO:0001558;regulation of cell growth;0.00666339291876447!GO:0019843;rRNA binding;0.00695672710177797!GO:0000082;G1/S transition of mitotic cell cycle;0.00719949848433146!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00742815032654607!GO:0051052;regulation of DNA metabolic process;0.00759753069385471!GO:0045792;negative regulation of cell size;0.00782484075020414!GO:0006650;glycerophospholipid metabolic process;0.00792256043865578!GO:0043624;cellular protein complex disassembly;0.00794519078873517!GO:0008022;protein C-terminus binding;0.00796417425521171!GO:0048487;beta-tubulin binding;0.00805414191494126!GO:0006310;DNA recombination;0.00809740999906701!GO:0006839;mitochondrial transport;0.00814034931245793!GO:0006611;protein export from nucleus;0.00815761196284866!GO:0009119;ribonucleoside metabolic process;0.00815761196284866!GO:0043022;ribosome binding;0.00855052988254503!GO:0007006;mitochondrial membrane organization and biogenesis;0.00861518571830245!GO:0009165;nucleotide biosynthetic process;0.00885152981112877!GO:0042802;identical protein binding;0.00898617480583051!GO:0065009;regulation of a molecular function;0.00906147266731984!GO:0005684;U2-dependent spliceosome;0.00910216451993426!GO:0003682;chromatin binding;0.00921845542724828!GO:0006376;mRNA splice site selection;0.0093215127622074!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0093215127622074!GO:0017166;vinculin binding;0.00933237726025465!GO:0006400;tRNA modification;0.0095842604320783!GO:0005791;rough endoplasmic reticulum;0.00962240276508679!GO:0016044;membrane organization and biogenesis;0.00967281637517873!GO:0007050;cell cycle arrest;0.00997194877704119!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00997979525238075!GO:0008234;cysteine-type peptidase activity;0.0101875033622426!GO:0030308;negative regulation of cell growth;0.0108639450299783!GO:0030660;Golgi-associated vesicle membrane;0.0109547721311363!GO:0051128;regulation of cellular component organization and biogenesis;0.0110321094305282!GO:0051059;NF-kappaB binding;0.0111523089986272!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0113498016756626!GO:0031124;mRNA 3'-end processing;0.0113498016756626!GO:0043407;negative regulation of MAP kinase activity;0.0113871638078327!GO:0005832;chaperonin-containing T-complex;0.0117979798100795!GO:0006144;purine base metabolic process;0.0118655919078907!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0125422154342261!GO:0008632;apoptotic program;0.0131878310414364!GO:0030663;COPI coated vesicle membrane;0.0133587929197126!GO:0030126;COPI vesicle coat;0.0133587929197126!GO:0007030;Golgi organization and biogenesis;0.0134536129613347!GO:0030384;phosphoinositide metabolic process;0.0136748906260721!GO:0043488;regulation of mRNA stability;0.014004471256106!GO:0043487;regulation of RNA stability;0.014004471256106!GO:0032984;macromolecular complex disassembly;0.0144291279112336!GO:0030176;integral to endoplasmic reticulum membrane;0.0147692822620063!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0151937937810077!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0151937937810077!GO:0030125;clathrin vesicle coat;0.0152110854496155!GO:0030665;clathrin coated vesicle membrane;0.0152110854496155!GO:0030137;COPI-coated vesicle;0.0157136336576062!GO:0032940;secretion by cell;0.0157136336576062!GO:0015631;tubulin binding;0.0158524336228798!GO:0032200;telomere organization and biogenesis;0.0164726831434193!GO:0000723;telomere maintenance;0.0164726831434193!GO:0006595;polyamine metabolic process;0.0167115911457333!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0169538936924774!GO:0030659;cytoplasmic vesicle membrane;0.017257445527067!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0174669741594234!GO:0030518;steroid hormone receptor signaling pathway;0.0180177659625695!GO:0031529;ruffle organization and biogenesis;0.0180502122861345!GO:0004527;exonuclease activity;0.0184095036595025!GO:0046128;purine ribonucleoside metabolic process;0.0184095036595025!GO:0042278;purine nucleoside metabolic process;0.0184095036595025!GO:0008097;5S rRNA binding;0.0188577476445818!GO:0001726;ruffle;0.0188577476445818!GO:0031902;late endosome membrane;0.0188577476445818!GO:0045926;negative regulation of growth;0.0191041489257612!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0192076148528161!GO:0015399;primary active transmembrane transporter activity;0.0192076148528161!GO:0031461;cullin-RING ubiquitin ligase complex;0.0196214365679557!GO:0032507;maintenance of cellular protein localization;0.0196952929769403!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0198108363346613!GO:0006378;mRNA polyadenylation;0.0200667649946847!GO:0007004;telomere maintenance via telomerase;0.0202032561097638!GO:0051540;metal cluster binding;0.0203207781975748!GO:0051536;iron-sulfur cluster binding;0.0203207781975748!GO:0031326;regulation of cellular biosynthetic process;0.0210800824372494!GO:0004003;ATP-dependent DNA helicase activity;0.0210800824372494!GO:0007034;vacuolar transport;0.0211165805687039!GO:0046983;protein dimerization activity;0.021231788923504!GO:0030119;AP-type membrane coat adaptor complex;0.0214225337836058!GO:0031123;RNA 3'-end processing;0.0214225337836058!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0216813468524271!GO:0005637;nuclear inner membrane;0.0217499967131293!GO:0043241;protein complex disassembly;0.0219143838287321!GO:0048144;fibroblast proliferation;0.0222205147912596!GO:0048145;regulation of fibroblast proliferation;0.0222205147912596!GO:0000209;protein polyubiquitination;0.0222853866916062!GO:0009451;RNA modification;0.0223510692673058!GO:0008094;DNA-dependent ATPase activity;0.022713861633918!GO:0006360;transcription from RNA polymerase I promoter;0.022763627208106!GO:0006497;protein amino acid lipidation;0.0228758480726637!GO:0030027;lamellipodium;0.022967585501062!GO:0032508;DNA duplex unwinding;0.0232421656804102!GO:0032392;DNA geometric change;0.0232421656804102!GO:0000075;cell cycle checkpoint;0.0233920626255108!GO:0008047;enzyme activator activity;0.0237092800554538!GO:0044433;cytoplasmic vesicle part;0.023888567810833!GO:0006984;ER-nuclear signaling pathway;0.0241358717653928!GO:0022411;cellular component disassembly;0.0242339231588192!GO:0031901;early endosome membrane;0.0243865237238573!GO:0005657;replication fork;0.0263047036073323!GO:0005819;spindle;0.0264788219368098!GO:0006289;nucleotide-excision repair;0.0269187338096848!GO:0030833;regulation of actin filament polymerization;0.0269654309204357!GO:0000123;histone acetyltransferase complex;0.0269973371454978!GO:0006458;'de novo' protein folding;0.0269973371454978!GO:0051084;'de novo' posttranslational protein folding;0.0269973371454978!GO:0008538;proteasome activator activity;0.0279505071014332!GO:0009303;rRNA transcription;0.0285071304937443!GO:0009967;positive regulation of signal transduction;0.0286762652982571!GO:0022408;negative regulation of cell-cell adhesion;0.0292312728790785!GO:0012506;vesicle membrane;0.0293542819152251!GO:0007265;Ras protein signal transduction;0.0295371057329201!GO:0048146;positive regulation of fibroblast proliferation;0.0297825092728139!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0299074614099037!GO:0009893;positive regulation of metabolic process;0.0299915841182371!GO:0000096;sulfur amino acid metabolic process;0.0299915841182371!GO:0048518;positive regulation of biological process;0.0300196647414849!GO:0022415;viral reproductive process;0.0302457169497976!GO:0051101;regulation of DNA binding;0.0304182742933312!GO:0046822;regulation of nucleocytoplasmic transport;0.0304799101915!GO:0017134;fibroblast growth factor binding;0.030561422424488!GO:0030433;ER-associated protein catabolic process;0.0314756602486308!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0314756602486308!GO:0030131;clathrin adaptor complex;0.0315514836500242!GO:0009889;regulation of biosynthetic process;0.0319273233356832!GO:0042809;vitamin D receptor binding;0.0323519726944803!GO:0005083;small GTPase regulator activity;0.0328892174097182!GO:0047485;protein N-terminus binding;0.0329055128319957!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0331928916096017!GO:0015002;heme-copper terminal oxidase activity;0.0331928916096017!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0331928916096017!GO:0004129;cytochrome-c oxidase activity;0.0331928916096017!GO:0003725;double-stranded RNA binding;0.0331928916096017!GO:0008637;apoptotic mitochondrial changes;0.0332667428799482!GO:0000339;RNA cap binding;0.0332677149791203!GO:0043189;H4/H2A histone acetyltransferase complex;0.0340483651270637!GO:0005784;translocon complex;0.0344030415724292!GO:0008092;cytoskeletal protein binding;0.0346049835220161!GO:0040029;regulation of gene expression, epigenetic;0.0349742351330691!GO:0004532;exoribonuclease activity;0.0351007755334904!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0351007755334904!GO:0005732;small nucleolar ribonucleoprotein complex;0.0353484126191775!GO:0000287;magnesium ion binding;0.0360861908964155!GO:0016579;protein deubiquitination;0.0361650018140795!GO:0000178;exosome (RNase complex);0.0368351296086473!GO:0042026;protein refolding;0.0370466962316253!GO:0051539;4 iron, 4 sulfur cluster binding;0.0371985797530188!GO:0051651;maintenance of cellular localization;0.0375127356956911!GO:0042393;histone binding;0.0378788712297949!GO:0043130;ubiquitin binding;0.0380123442520046!GO:0032182;small conjugating protein binding;0.0380123442520046!GO:0000118;histone deacetylase complex;0.0383369091030424!GO:0016791;phosphoric monoester hydrolase activity;0.0387497223906193!GO:0005869;dynactin complex;0.0387497223906193!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0389044212348027!GO:0040008;regulation of growth;0.0389786214815339!GO:0006506;GPI anchor biosynthetic process;0.0389979134358744!GO:0004860;protein kinase inhibitor activity;0.0390910307681155!GO:0000152;nuclear ubiquitin ligase complex;0.0391352096175964!GO:0008536;Ran GTPase binding;0.0394954676175324!GO:0015992;proton transport;0.0395318023365475!GO:0051287;NAD binding;0.0395753720643621!GO:0016311;dephosphorylation;0.0395753720643621!GO:0006818;hydrogen transport;0.0395754064030892!GO:0050662;coenzyme binding;0.0401894737395502!GO:0000776;kinetochore;0.0402972130025432!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0408831602029281!GO:0050681;androgen receptor binding;0.0416113928789855!GO:0005874;microtubule;0.0417102507671286!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0417705604313791!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0417705604313791!GO:0008017;microtubule binding;0.0421418920372117!GO:0006505;GPI anchor metabolic process;0.0421418920372117!GO:0007041;lysosomal transport;0.0426915797544974!GO:0030224;monocyte differentiation;0.0437369040890469!GO:0007162;negative regulation of cell adhesion;0.0450063490275177!GO:0007021;tubulin folding;0.0455857040273794!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0457178191074525!GO:0008286;insulin receptor signaling pathway;0.0459304494494055!GO:0004177;aminopeptidase activity;0.0466542437872564!GO:0006607;NLS-bearing substrate import into nucleus;0.0477543736522781!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0483345372698045!GO:0032040;small subunit processome;0.0484499905747619!GO:0005521;lamin binding;0.0486802462609223!GO:0000781;chromosome, telomeric region;0.0486924088358751!GO:0006268;DNA unwinding during replication;0.0496006528294589 | |||
|sample_id=10509 | |sample_id=10509 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=AHR_ARNT_ARNT2:1.54132959411;FOX{I1,J2}:1.44667214087;bHLH_family:1.35127874078;HIF1A:1.15947576911;HBP1_HMGB_SSRP1_UBTF:1.15783095738;ZNF148:1.12264355923;PITX1..3:1.08085003112;NANOG:1.07188089216;NKX2-1,4:1.02893848727;FOXQ1:1.01506141424;RXR{A,B,G}:1.00523282236;CRX:0.934420979964;MYOD1:0.933261821374;YY1:0.910688540448;STAT1,3:0.868571955564;PPARG:0.818251321299;ELK1,4_GABP{A,B1}:0.797510886804;FOX{D1,D2}:0.773382285596;ZNF143:0.758411076821;ONECUT1,2:0.752799448002;HOXA9_MEIS1:0.751215113903;MZF1:0.737492442539;FOXA2:0.728567930053;NKX6-1,2:0.685731912662;ADNP_IRX_SIX_ZHX:0.684401784663;EN1,2:0.657547287557;SOX17:0.648191458979;STAT5{A,B}:0.647539081537;FOXP1:0.593647064362;POU1F1:0.50685893235;CDC5L:0.462107247887;FOX{F1,F2,J1}:0.451510872067;BACH2:0.450289149505;RBPJ:0.44705147368;NRF1:0.413299782364;FOXM1:0.396797444565;IRF7:0.372183323881;FOS_FOS{B,L1}_JUN{B,D}:0.357255646581;HOX{A4,D4}:0.356461807712;TEF:0.355004940444;PATZ1:0.337895473476;NKX2-3_NKX2-5:0.313861486669;TEAD1:0.310302106298;XBP1:0.300396324209;FOSL2:0.271476373479;CDX1,2,4:0.262793379795;RORA:0.260208208975;NFE2:0.246962726165;MED-1{core}:0.234327260992;PAX8:0.229152320917;ALX1:0.217025017244;FOXD3:0.21650378029;TBX4,5:0.215152610523;HES1:0.209773845792;CUX2:0.203420581788;PDX1:0.197114056641;RREB1:0.19603888347;MYB:0.18366671297;TFDP1:0.178926602784;TLX2:0.175685421636;LHX3,4:0.169491440944;ZBTB16:0.164078667981;SNAI1..3:0.164039425082;EVI1:0.153687940206;ZFP161:0.136296771178;FOXN1:0.129520546315;PRRX1,2:0.124186808401;ZIC1..3:0.122874842329;IRF1,2:0.107571016127;SPZ1:0.104089719368;ESRRA:0.0881350768348;NFE2L2:0.0834990130125;ATF5_CREB3:0.0813659364789;PAX2:0.0637073703743;RFX2..5_RFXANK_RFXAP:0.0621221188323;PAX3,7:0.0615094503322;ATF4:0.0613130642213;ZEB1:0.0403567829533;HOX{A6,A7,B6,B7}:0.0397522375013;REST:0.0265787698123;EGR1..3:0.018870983107;CEBPA,B_DDIT3:0.0158374282134;NFIL3:0.00771641820761;GLI1..3:0.00533271850311;NFKB1_REL_RELA:0.00388800093181;HSF1,2:-0.00196961857021;GTF2A1,2:-0.00896720637345;ELF1,2,4:-0.0128422484671;LEF1_TCF7_TCF7L1,2:-0.0163199203156;HOX{A5,B5}:-0.0217206703453;ZBTB6:-0.0377927791545;GTF2I:-0.0411610877555;OCT4_SOX2{dimer}:-0.0442355459341;NKX3-1:-0.0496472951492;SOX5:-0.0506954509978;VSX1,2:-0.0530562263515;SOX2:-0.05546735448;MTF1:-0.0811647606314;NKX3-2:-0.0862233252348;PRDM1:-0.0964976587916;NHLH1,2:-0.0971489992061;TLX1..3_NFIC{dimer}:-0.102848710102;TOPORS:-0.104923434688;POU6F1:-0.109161703546;MAZ:-0.114128639565;GZF1:-0.118886858545;TFAP2{A,C}:-0.145417920659;RUNX1..3:-0.147827636897;NR1H4:-0.155633437029;ARID5B:-0.158398635553;HMGA1,2:-0.167685211437;TFAP2B:-0.174132856164;TFCP2:-0.181718842817;SRF:-0.186760224633;HNF1A:-0.187629328667;HLF:-0.196961801101;EBF1:-0.200913677744;ETS1,2:-0.202494887825;SPIB:-0.211619958847;BREu{core}:-0.221881399345;BPTF:-0.224172834084;ALX4:-0.228047263728;TP53:-0.244429766022;NR3C1:-0.253698351265;FOXP3:-0.254030509923;E2F1..5:-0.25603120118;RFX1:-0.257710211689;STAT2,4,6:-0.25817862183;DBP:-0.258659123842;CREB1:-0.259617670484;RXRA_VDR{dimer}:-0.261712426063;GATA4:-0.266386678;GCM1,2:-0.27438584674;PAX4:-0.299345218642;NR6A1:-0.31308773317;GATA6:-0.313881139056;PAX6:-0.318605130931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.323136934368;MEF2{A,B,C,D}:-0.335593906344;FOXO1,3,4:-0.341714127817;MYBL2:-0.342737253554;ESR1:-0.345062774887;TAL1_TCF{3,4,12}:-0.349489860817;FOXL1:-0.354911461103;AIRE:-0.357863357415;LMO2:-0.366182172824;KLF4:-0.373130270084;PAX5:-0.376765185442;XCPE1{core}:-0.397239737836;DMAP1_NCOR{1,2}_SMARC:-0.398503952551;AR:-0.424977359835;MTE{core}:-0.430428766404;SPI1:-0.437106748677;TFAP4:-0.446602714437;NFATC1..3:-0.454785175546;POU2F1..3:-0.456220560202;HNF4A_NR2F1,2:-0.457583689455;JUN:-0.469587325869;SP1:-0.503074497223;NFE2L1:-0.503891352478;HIC1:-0.538253253143;IKZF1:-0.550702764843;NFIX:-0.553725755518;SREBF1,2:-0.559097285579;SOX{8,9,10}:-0.572874551705;GFI1B:-0.57648580549;TGIF1:-0.614140033892;ATF6:-0.619899342905;UFEwm:-0.622822711755;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.629151601978;HAND1,2:-0.686208474575;PBX1:-0.694094861013;NR5A1,2:-0.70330883458;NFY{A,B,C}:-0.712212591027;MYFfamily:-0.72517803714;ZNF384:-0.729728415863;MAFB:-0.757368417156;ATF2:-0.777833402634;GFI1:-0.805644699536;IKZF2:-0.817694429667;EP300:-0.826233193677;ZNF238:-0.880662253901;POU5F1:-0.901477127199;TBP:-0.904146336713;NKX2-2,8:-0.910758493892;ZNF423:-1.01527660746;HMX1:-1.02459720973;PAX1,9:-1.14658729991;NANOG{mouse}:-1.14706393227;POU3F1..4:-1.32129312148;T:-1.47022655709;SMAD1..7,9:-1.56588400523 | |top_motifs=AHR_ARNT_ARNT2:1.54132959411;FOX{I1,J2}:1.44667214087;bHLH_family:1.35127874078;HIF1A:1.15947576911;HBP1_HMGB_SSRP1_UBTF:1.15783095738;ZNF148:1.12264355923;PITX1..3:1.08085003112;NANOG:1.07188089216;NKX2-1,4:1.02893848727;FOXQ1:1.01506141424;RXR{A,B,G}:1.00523282236;CRX:0.934420979964;MYOD1:0.933261821374;YY1:0.910688540448;STAT1,3:0.868571955564;PPARG:0.818251321299;ELK1,4_GABP{A,B1}:0.797510886804;FOX{D1,D2}:0.773382285596;ZNF143:0.758411076821;ONECUT1,2:0.752799448002;HOXA9_MEIS1:0.751215113903;MZF1:0.737492442539;FOXA2:0.728567930053;NKX6-1,2:0.685731912662;ADNP_IRX_SIX_ZHX:0.684401784663;EN1,2:0.657547287557;SOX17:0.648191458979;STAT5{A,B}:0.647539081537;FOXP1:0.593647064362;POU1F1:0.50685893235;CDC5L:0.462107247887;FOX{F1,F2,J1}:0.451510872067;BACH2:0.450289149505;RBPJ:0.44705147368;NRF1:0.413299782364;FOXM1:0.396797444565;IRF7:0.372183323881;FOS_FOS{B,L1}_JUN{B,D}:0.357255646581;HOX{A4,D4}:0.356461807712;TEF:0.355004940444;PATZ1:0.337895473476;NKX2-3_NKX2-5:0.313861486669;TEAD1:0.310302106298;XBP1:0.300396324209;FOSL2:0.271476373479;CDX1,2,4:0.262793379795;RORA:0.260208208975;NFE2:0.246962726165;MED-1{core}:0.234327260992;PAX8:0.229152320917;ALX1:0.217025017244;FOXD3:0.21650378029;TBX4,5:0.215152610523;HES1:0.209773845792;CUX2:0.203420581788;PDX1:0.197114056641;RREB1:0.19603888347;MYB:0.18366671297;TFDP1:0.178926602784;TLX2:0.175685421636;LHX3,4:0.169491440944;ZBTB16:0.164078667981;SNAI1..3:0.164039425082;EVI1:0.153687940206;ZFP161:0.136296771178;FOXN1:0.129520546315;PRRX1,2:0.124186808401;ZIC1..3:0.122874842329;IRF1,2:0.107571016127;SPZ1:0.104089719368;ESRRA:0.0881350768348;NFE2L2:0.0834990130125;ATF5_CREB3:0.0813659364789;PAX2:0.0637073703743;RFX2..5_RFXANK_RFXAP:0.0621221188323;PAX3,7:0.0615094503322;ATF4:0.0613130642213;ZEB1:0.0403567829533;HOX{A6,A7,B6,B7}:0.0397522375013;REST:0.0265787698123;EGR1..3:0.018870983107;CEBPA,B_DDIT3:0.0158374282134;NFIL3:0.00771641820761;GLI1..3:0.00533271850311;NFKB1_REL_RELA:0.00388800093181;HSF1,2:-0.00196961857021;GTF2A1,2:-0.00896720637345;ELF1,2,4:-0.0128422484671;LEF1_TCF7_TCF7L1,2:-0.0163199203156;HOX{A5,B5}:-0.0217206703453;ZBTB6:-0.0377927791545;GTF2I:-0.0411610877555;OCT4_SOX2{dimer}:-0.0442355459341;NKX3-1:-0.0496472951492;SOX5:-0.0506954509978;VSX1,2:-0.0530562263515;SOX2:-0.05546735448;MTF1:-0.0811647606314;NKX3-2:-0.0862233252348;PRDM1:-0.0964976587916;NHLH1,2:-0.0971489992061;TLX1..3_NFIC{dimer}:-0.102848710102;TOPORS:-0.104923434688;POU6F1:-0.109161703546;MAZ:-0.114128639565;GZF1:-0.118886858545;TFAP2{A,C}:-0.145417920659;RUNX1..3:-0.147827636897;NR1H4:-0.155633437029;ARID5B:-0.158398635553;HMGA1,2:-0.167685211437;TFAP2B:-0.174132856164;TFCP2:-0.181718842817;SRF:-0.186760224633;HNF1A:-0.187629328667;HLF:-0.196961801101;EBF1:-0.200913677744;ETS1,2:-0.202494887825;SPIB:-0.211619958847;BREu{core}:-0.221881399345;BPTF:-0.224172834084;ALX4:-0.228047263728;TP53:-0.244429766022;NR3C1:-0.253698351265;FOXP3:-0.254030509923;E2F1..5:-0.25603120118;RFX1:-0.257710211689;STAT2,4,6:-0.25817862183;DBP:-0.258659123842;CREB1:-0.259617670484;RXRA_VDR{dimer}:-0.261712426063;GATA4:-0.266386678;GCM1,2:-0.27438584674;PAX4:-0.299345218642;NR6A1:-0.31308773317;GATA6:-0.313881139056;PAX6:-0.318605130931;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.323136934368;MEF2{A,B,C,D}:-0.335593906344;FOXO1,3,4:-0.341714127817;MYBL2:-0.342737253554;ESR1:-0.345062774887;TAL1_TCF{3,4,12}:-0.349489860817;FOXL1:-0.354911461103;AIRE:-0.357863357415;LMO2:-0.366182172824;KLF4:-0.373130270084;PAX5:-0.376765185442;XCPE1{core}:-0.397239737836;DMAP1_NCOR{1,2}_SMARC:-0.398503952551;AR:-0.424977359835;MTE{core}:-0.430428766404;SPI1:-0.437106748677;TFAP4:-0.446602714437;NFATC1..3:-0.454785175546;POU2F1..3:-0.456220560202;HNF4A_NR2F1,2:-0.457583689455;JUN:-0.469587325869;SP1:-0.503074497223;NFE2L1:-0.503891352478;HIC1:-0.538253253143;IKZF1:-0.550702764843;NFIX:-0.553725755518;SREBF1,2:-0.559097285579;SOX{8,9,10}:-0.572874551705;GFI1B:-0.57648580549;TGIF1:-0.614140033892;ATF6:-0.619899342905;UFEwm:-0.622822711755;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.629151601978;HAND1,2:-0.686208474575;PBX1:-0.694094861013;NR5A1,2:-0.70330883458;NFY{A,B,C}:-0.712212591027;MYFfamily:-0.72517803714;ZNF384:-0.729728415863;MAFB:-0.757368417156;ATF2:-0.777833402634;GFI1:-0.805644699536;IKZF2:-0.817694429667;EP300:-0.826233193677;ZNF238:-0.880662253901;POU5F1:-0.901477127199;TBP:-0.904146336713;NKX2-2,8:-0.910758493892;ZNF423:-1.01527660746;HMX1:-1.02459720973;PAX1,9:-1.14658729991;NANOG{mouse}:-1.14706393227;POU3F1..4:-1.32129312148;T:-1.47022655709;SMAD1..7,9:-1.56588400523 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10509-107D5;search_select_hide=table117:FF:10509-107D5 | |||
}} | }} | ||
Latest revision as of 14:27, 3 June 2020
| Name: | large cell lung carcinoma cell line:IA-LM |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11277 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11277
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11277
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.784 |
| 10 | 10 | 0.385 |
| 100 | 100 | 0.789 |
| 101 | 101 | 0.372 |
| 102 | 102 | 0.657 |
| 103 | 103 | 0.305 |
| 104 | 104 | 0.685 |
| 105 | 105 | 0.709 |
| 106 | 106 | 0.388 |
| 107 | 107 | 0.795 |
| 108 | 108 | 0.394 |
| 109 | 109 | 0.894 |
| 11 | 11 | 0.504 |
| 110 | 110 | 0.578 |
| 111 | 111 | 0.0633 |
| 112 | 112 | 0.0793 |
| 113 | 113 | 0.704 |
| 114 | 114 | 0.862 |
| 115 | 115 | 0.0523 |
| 116 | 116 | 0.17 |
| 117 | 117 | 0.00673 |
| 118 | 118 | 0.767 |
| 119 | 119 | 0.533 |
| 12 | 12 | 0.474 |
| 120 | 120 | 0.0892 |
| 121 | 121 | 0.927 |
| 122 | 122 | 0.656 |
| 123 | 123 | 0.373 |
| 124 | 124 | 0.854 |
| 125 | 125 | 0.582 |
| 126 | 126 | 0.925 |
| 127 | 127 | 0.976 |
| 128 | 128 | 0.143 |
| 129 | 129 | 0.972 |
| 13 | 13 | 0.267 |
| 130 | 130 | 0.371 |
| 131 | 131 | 0.842 |
| 132 | 132 | 0.879 |
| 133 | 133 | 0.1 |
| 134 | 134 | 0.586 |
| 135 | 135 | 0.0331 |
| 136 | 136 | 0.211 |
| 137 | 137 | 0.931 |
| 138 | 138 | 0.486 |
| 139 | 139 | 0.949 |
| 14 | 14 | 0.379 |
| 140 | 140 | 0.264 |
| 141 | 141 | 0.66 |
| 142 | 142 | 0.18 |
| 143 | 143 | 0.764 |
| 144 | 144 | 0.696 |
| 145 | 145 | 0.15 |
| 146 | 146 | 0.159 |
| 147 | 147 | 0.932 |
| 148 | 148 | 0.0469 |
| 149 | 149 | 0.126 |
| 15 | 15 | 0.851 |
| 150 | 150 | 0.825 |
| 151 | 151 | 0.352 |
| 152 | 152 | 0.971 |
| 153 | 153 | 0.28 |
| 154 | 154 | 0.857 |
| 155 | 155 | 0.531 |
| 156 | 156 | 0.727 |
| 157 | 157 | 0.676 |
| 158 | 158 | 0.335 |
| 159 | 159 | 0.0564 |
| 16 | 16 | 0.258 |
| 160 | 160 | 0.481 |
| 161 | 161 | 0.925 |
| 162 | 162 | 0.988 |
| 163 | 163 | 0.0339 |
| 164 | 164 | 0.933 |
| 165 | 165 | 0.728 |
| 166 | 166 | 0.306 |
| 167 | 167 | 0.641 |
| 168 | 168 | 0.625 |
| 169 | 169 | 0.41 |
| 17 | 17 | 0.625 |
| 18 | 18 | 0.908 |
| 19 | 19 | 0.022 |
| 2 | 2 | 0.0148 |
| 20 | 20 | 1.79696e-4 |
| 21 | 21 | 0.688 |
| 22 | 22 | 0.298 |
| 23 | 23 | 0.00545 |
| 24 | 24 | 0.358 |
| 25 | 25 | 0.229 |
| 26 | 26 | 0.795 |
| 27 | 27 | 0.0507 |
| 28 | 28 | 0.128 |
| 29 | 29 | 0.117 |
| 3 | 3 | 0.563 |
| 30 | 30 | 0.407 |
| 31 | 31 | 0.474 |
| 32 | 32 | 8.76076e-4 |
| 33 | 33 | 0.744 |
| 34 | 34 | 0.196 |
| 35 | 35 | 0.167 |
| 36 | 36 | 0.15 |
| 37 | 37 | 0.643 |
| 38 | 38 | 0.568 |
| 39 | 39 | 0.343 |
| 4 | 4 | 0.0536 |
| 40 | 40 | 0.675 |
| 41 | 41 | 0.202 |
| 42 | 42 | 0.111 |
| 43 | 43 | 0.827 |
| 44 | 44 | 0.0852 |
| 45 | 45 | 0.254 |
| 46 | 46 | 0.915 |
| 47 | 47 | 0.726 |
| 48 | 48 | 0.938 |
| 49 | 49 | 0.438 |
| 5 | 5 | 0.737 |
| 50 | 50 | 0.481 |
| 51 | 51 | 0.104 |
| 52 | 52 | 0.183 |
| 53 | 53 | 0.867 |
| 54 | 54 | 0.295 |
| 55 | 55 | 0.58 |
| 56 | 56 | 0.914 |
| 57 | 57 | 0.381 |
| 58 | 58 | 0.913 |
| 59 | 59 | 0.477 |
| 6 | 6 | 0.931 |
| 60 | 60 | 0.159 |
| 61 | 61 | 0.0528 |
| 62 | 62 | 0.489 |
| 63 | 63 | 0.817 |
| 64 | 64 | 0.306 |
| 65 | 65 | 0.00621 |
| 66 | 66 | 2.77038e-6 |
| 67 | 67 | 0.263 |
| 68 | 68 | 0.996 |
| 69 | 69 | 0.862 |
| 7 | 7 | 0.913 |
| 70 | 70 | 0.337 |
| 71 | 71 | 0.785 |
| 72 | 72 | 0.526 |
| 73 | 73 | 0.748 |
| 74 | 74 | 0.644 |
| 75 | 75 | 0.0161 |
| 76 | 76 | 0.00274 |
| 77 | 77 | 0.161 |
| 78 | 78 | 0.609 |
| 79 | 79 | 0.249 |
| 8 | 8 | 0.194 |
| 80 | 80 | 0.408 |
| 81 | 81 | 0.619 |
| 82 | 82 | 0.202 |
| 83 | 83 | 0.115 |
| 84 | 84 | 0.386 |
| 85 | 85 | 0.361 |
| 86 | 86 | 0.44 |
| 87 | 87 | 0.241 |
| 88 | 88 | 0.822 |
| 89 | 89 | 0.0339 |
| 9 | 9 | 0.275 |
| 90 | 90 | 0.799 |
| 91 | 91 | 0.0588 |
| 92 | 92 | 0.777 |
| 93 | 93 | 0.793 |
| 94 | 94 | 0.628 |
| 95 | 95 | 0.441 |
| 96 | 96 | 0.38 |
| 97 | 97 | 0.546 |
| 98 | 98 | 0.708 |
| 99 | 99 | 0.859 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11277
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102205 large cell lung cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
4556 (lung large cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102205 (large cell lung cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
