FF:10486-107A9: Difference between revisions

Latest revision as of 14:26, 3 June 2020

Name:	squamous cell lung carcinoma cell line:EBC-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11273
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	male
age	69
cell type	unclassifiable
cell line	EBC-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004799

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11273		CAGE		DRX008017		DRR008889

Accession ID Hg19

Library id		BAM		CTSS
CNhs11273		DRZ000314		DRZ001699

Accession ID Hg38

Library id		BAM		CTSS
CNhs11273		DRZ011664		DRZ013049

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.024
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0951
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.00418
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00232
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	2.107462e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0161
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.173
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.238
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.147
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.517
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0335
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0335
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.105
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11273

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.228
MA0003.1	MA0003.1	0.109
MA0004.1	MA0004.1	0.00861
MA0006.1	MA0006.1	0.47
MA0007.1	MA0007.1	0.284
MA0009.1	MA0009.1	0.376
MA0014.1	MA0014.1	0.0235
MA0017.1	MA0017.1	0.387
MA0018.2	MA0018.2	0.0589
MA0019.1	MA0019.1	0.383
MA0024.1	MA0024.1	0.279
MA0025.1	MA0025.1	0.202
MA0027.1	MA0027.1	0.632
MA0028.1	MA0028.1	4.29364e-12
MA0029.1	MA0029.1	0.969
MA0030.1	MA0030.1	0.68
MA0031.1	MA0031.1	0.653
MA0035.2	MA0035.2	0.922
MA0038.1	MA0038.1	0.152
MA0039.2	MA0039.2	0.736
MA0040.1	MA0040.1	0.445
MA0041.1	MA0041.1	0.673
MA0042.1	MA0042.1	0.858
MA0043.1	MA0043.1	0.0296
MA0046.1	MA0046.1	0.64
MA0047.2	MA0047.2	0.119
MA0048.1	MA0048.1	0.318
MA0050.1	MA0050.1	0.289
MA0051.1	MA0051.1	0.0394
MA0052.1	MA0052.1	0.00601
MA0055.1	MA0055.1	1.42746e-4
MA0057.1	MA0057.1	0.684
MA0058.1	MA0058.1	3.36652e-4
MA0059.1	MA0059.1	0.0138
MA0060.1	MA0060.1	0.546
MA0061.1	MA0061.1	0.536
MA0062.2	MA0062.2	5.1362e-15
MA0065.2	MA0065.2	0.0531
MA0066.1	MA0066.1	0.96
MA0067.1	MA0067.1	0.557
MA0068.1	MA0068.1	0.0529
MA0069.1	MA0069.1	0.717
MA0070.1	MA0070.1	0.171
MA0071.1	MA0071.1	0.638
MA0072.1	MA0072.1	0.338
MA0073.1	MA0073.1	0.809
MA0074.1	MA0074.1	0.814
MA0076.1	MA0076.1	3.12865e-16
MA0077.1	MA0077.1	0.804
MA0078.1	MA0078.1	0.712
MA0079.2	MA0079.2	0.0999
MA0080.2	MA0080.2	0.00425
MA0081.1	MA0081.1	0.617
MA0083.1	MA0083.1	0.00152
MA0084.1	MA0084.1	0.333
MA0087.1	MA0087.1	0.999
MA0088.1	MA0088.1	0.0425
MA0090.1	MA0090.1	0.567
MA0091.1	MA0091.1	0.0852
MA0092.1	MA0092.1	0.671
MA0093.1	MA0093.1	0.00373
MA0099.2	MA0099.2	1.14219e-12
MA0100.1	MA0100.1	0.446
MA0101.1	MA0101.1	0.277
MA0102.2	MA0102.2	0.291
MA0103.1	MA0103.1	4.78557e-8
MA0104.2	MA0104.2	9.6725e-4
MA0105.1	MA0105.1	0.926
MA0106.1	MA0106.1	0.281
MA0107.1	MA0107.1	0.0688
MA0108.2	MA0108.2	6.87685e-15
MA0111.1	MA0111.1	0.505
MA0112.2	MA0112.2	0.164
MA0113.1	MA0113.1	0.505
MA0114.1	MA0114.1	0.0144
MA0115.1	MA0115.1	0.0625
MA0116.1	MA0116.1	0.167
MA0117.1	MA0117.1	0.906
MA0119.1	MA0119.1	0.498
MA0122.1	MA0122.1	0.853
MA0124.1	MA0124.1	0.458
MA0125.1	MA0125.1	0.434
MA0131.1	MA0131.1	0.0754
MA0135.1	MA0135.1	0.0491
MA0136.1	MA0136.1	0.171
MA0137.2	MA0137.2	0.118
MA0138.2	MA0138.2	0.0908
MA0139.1	MA0139.1	2.52766e-4
MA0140.1	MA0140.1	0.438
MA0141.1	MA0141.1	0.47
MA0142.1	MA0142.1	0.948
MA0143.1	MA0143.1	0.996
MA0144.1	MA0144.1	0.508
MA0145.1	MA0145.1	0.775
MA0146.1	MA0146.1	0.819
MA0147.1	MA0147.1	9.4274e-4
MA0148.1	MA0148.1	0.00382
MA0149.1	MA0149.1	0.0333
MA0150.1	MA0150.1	1.5219e-5
MA0152.1	MA0152.1	0.891
MA0153.1	MA0153.1	0.106
MA0154.1	MA0154.1	0.695
MA0155.1	MA0155.1	0.0392
MA0156.1	MA0156.1	2.80816e-4
MA0157.1	MA0157.1	0.814
MA0159.1	MA0159.1	0.00491
MA0160.1	MA0160.1	0.143
MA0162.1	MA0162.1	0.912
MA0163.1	MA0163.1	0.00383
MA0164.1	MA0164.1	0.173
MA0258.1	MA0258.1	0.776
MA0259.1	MA0259.1	0.0579

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11273

Novel motif	Logo	P-value
1	1	0.0706
10	10	0.0476
100	100	0.0438
101	101	0.633
102	102	0.826
103	103	0.173
104	104	0.347
105	105	0.514
106	106	0.063
107	107	0.176
108	108	0.703
109	109	0.021
11	11	0.997
110	110	0.247
111	111	0.0779
112	112	0.954
113	113	0.109
114	114	0.134
115	115	0.023
116	116	0.225
117	117	0.0183
118	118	0.51
119	119	0.0975
12	12	0.792
120	120	0.124
121	121	0.944
122	122	0.309
123	123	0.0256
124	124	0.47
125	125	0.637
126	126	0.641
127	127	0.632
128	128	0.0168
129	129	0.436
13	13	0.0171
130	130	0.566
131	131	0.235
132	132	0.236
133	133	0.122
134	134	0.182
135	135	0.063
136	136	0.208
137	137	0.488
138	138	0.912
139	139	0.274
14	14	0.799
140	140	0.489
141	141	0.37
142	142	0.301
143	143	0.0162
144	144	0.0285
145	145	0.574
146	146	0.41
147	147	0.997
148	148	0.0511
149	149	0.947
15	15	0.106
150	150	0.781
151	151	0.733
152	152	0.231
153	153	0.856
154	154	0.941
155	155	0.862
156	156	0.495
157	157	0.948
158	158	0.888
159	159	0.216
16	16	0.788
160	160	0.388
161	161	0.674
162	162	0.893
163	163	0.787
164	164	0.0761
165	165	0.428
166	166	0.299
167	167	0.0242
168	168	0.61
169	169	0.46
17	17	0.955
18	18	0.724
19	19	0.638
2	2	0.412
20	20	0.0624
21	21	0.342
22	22	0.575
23	23	0.148
24	24	0.0879
25	25	0.448
26	26	0.839
27	27	0.612
28	28	0.305
29	29	0.0402
3	3	0.407
30	30	0.535
31	31	0.365
32	32	0.0131
33	33	0.0739
34	34	0.102
35	35	0.498
36	36	0.0242
37	37	0.527
38	38	0.533
39	39	0.457
4	4	0.917
40	40	0.0215
41	41	0.491
42	42	0.219
43	43	0.71
44	44	0.52
45	45	0.635
46	46	0.895
47	47	0.313
48	48	0.535
49	49	0.984
5	5	0.66
50	50	0.705
51	51	0.908
52	52	0.146
53	53	0.747
54	54	0.717
55	55	0.866
56	56	0.928
57	57	0.351
58	58	0.983
59	59	0.404
6	6	0.545
60	60	0.578
61	61	0.302
62	62	0.705
63	63	0.343
64	64	0.937
65	65	0.397
66	66	0.119
67	67	0.905
68	68	0.0117
69	69	0.208
7	7	0.0738
70	70	0.0296
71	71	0.236
72	72	0.921
73	73	0.421
74	74	0.765
75	75	0.0116
76	76	0.0887
77	77	0.82
78	78	0.161
79	79	0.0546
8	8	0.665
80	80	0.573
81	81	0.477
82	82	0.523
83	83	0.538
84	84	0.684
85	85	0.327
86	86	0.462
87	87	0.0809
88	88	0.82
89	89	0.429
9	9	0.0919
90	90	0.176
91	91	0.885
92	92	0.588
93	93	0.836
94	94	0.901
95	95	0.201
96	96	0.788
97	97	0.723
98	98	0.501
99	99	0.066

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11273

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103001 EBC-1 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0100353 (lung cell line sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102202 (lung squamous cell carcinoma cell line sample)
0103001 (EBC-1 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007910
+|DRA_sample_Accession=CAGE@SAMD00004799
+|accession_numbers=CAGE;DRX008017;DRR008889;DRZ000314;DRZ001699;DRZ011664;DRZ013049
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000082,CL:0000255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.00!99.66!EHF;;chr7:101917407..101917443,+!p3@CUX1!1.73!52.56!CUX1;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.87!ELF3;;chr15:67418119..67418162,+!p5@SMAD3!1.68!52.40!SMAD3;;chr8:102504651..102504683,+!p1@GRHL2!1.54!33.54!GRHL2;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!49.03!FOXQ1;;chr7:101917447..101917479,+!p4@CUX1!1.50!30.89!CUX1;;chr15:67418047..67418093,+!p4@SMAD3!1.49!37.55!SMAD3;;chr7:101917482..101917507,+!p6@CUX1!1.42!25.36!CUX1;;chr1:201979703..201979721,+!p2@ELF3!1.42!25.04!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.27!19.98!PPARG;;chr15:67418099..67418118,+!p16@SMAD3!1.27!17.41!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.25!429.93!FOSL1;;chr1:158985493..158985535,+!p4@IFI16!1.23!24.47!IFI16;;chr2:238592039..238592054,+!p4@LRRFIP1!1.20!14.84!LRRFIP1;;chr15:67418177..67418204,+!p9@SMAD3!1.08!11.15!SMAD3;;chr11:65667884..65667895,-!p2@FOSL1!1.03!38.28!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.02!100.14!SOX9;;chr6:10412392..10412409,-!p4@TFAP2A!1.02!10.75!TFAP2A;;chr12:80084737..80084763,-!p3@PAWR!1.00!34.66!PAWR;;chr14:38064429..38064486,-!p1@FOXA1!1.00!8.91!FOXA1;;chr12:26277956..26277980,-!p1@BHLHE41!0.99!31.86!BHLHE41;;chr3:168864315..168864339,-!p2@MECOM!0.97!13.80!MECOM;;chr21:36421535..36421610,-!p2@RUNX1!0.92!27.12!RUNX1;;chr14:37131058..37131139,+!p1@PAX9!0.91!7.06!PAX9;;chr8:102504979..102505010,+!p2@GRHL2!0.88!6.58!GRHL2;;chr7:101917509..101917520,+!p9@CUX1!0.86!6.18!CUX1;;chr3:114343826..114343869,-!p4@ZBTB20!0.85!12.68!ZBTB20;;chr15:41913690..41913753,+!p2@MGA!0.84!14.84!MGA;;chr5:134369905..134369972,-!p1@PITX1!0.84!9.47!PITX1;;chr1:209979467..209979494,-!p1@IRF6!0.82!6.34!IRF6;;chr7:102985288..102985310,-!p2@DNAJC2!0.81!13.48!DNAJC2;;chr3:169381420..169381535,-!p1@MECOM!0.81!6.50!MECOM;;chr6:10412600..10412637,-!p1@TFAP2A!0.80!9.23!TFAP2A;;chr19:45971246..45971265,+!p1@FOSB!0.79!105.20!FOSB;;chr2:46524897..46524911,+!p2@EPAS1!0.79!15.33!EPAS1;;chr4:103423079..103423112,+!p4@NFKB1!0.79!5.14!NFKB1;;chr11:34642656..34642667,+!p2@EHF!0.79!5.14!EHF;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.86!NCOA4;;chr5:137804484..137804498,+!p2@EGR1!0.77!21.18!EGR1;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!13.96!ARNTL2;;chr13:41593425..41593480,-!p1@ELF1!0.76!33.06!ELF1;;chr6:28048343..28048354,+!p1@ZNF165!0.76!4.81!ZNF165;;chr3:69915385..69915438,+!p3@MITF!0.75!4.57!MITF;;chr11:65479462..65479517,+!p2@KAT5!0.74!20.06!KAT5;;chr1:43148855..43148908,+!p4@YBX1!0.74!7.46!YBX1;;chr14:75988771..75988826,+!p1@BATF!0.74!6.18!BATF;;chr1:158985469..158985489,+!p7@IFI16!0.74!5.46!IFI16;;chr7:27190547..27190591,-!p1@HOXA6!0.73!4.33!HOXA6;;chr9:110252035..110252057,-!p1@KLF4!0.72!77.35!KLF4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.46!TFAP2C;;chr7:17338266..17338282,+!p1@AHR!0.69!47.66!AHR;;chr5:124084493..124084524,-!p2@ZNF608!0.69!9.63!ZNF608;;chr12:26277929..26277955,-!p3@BHLHE41!0.69!5.86!BHLHE41;;chr15:71184890..71184909,-!p3@THAP10!0.69!5.22!THAP10;;chr12:124457746..124457828,+!p1@ZNF664!0.68!164.98!ZNF664;;chr4:56412978..56413003,-!p1@CLOCK!0.68!10.11!CLOCK;;chr15:96875657..96875760,+!p14@NR2F2!0.68!6.74!NR2F2;;chr15:71184837..71184877,-!p2@THAP10!0.67!5.30!THAP10;;chr8:102504690..102504704,+!p3@GRHL2!0.67!3.69!GRHL2;;chr7:102985160..102985273,-!p1@DNAJC2!0.66!103.75!DNAJC2;;chr12:7079780..7079791,-!p2@PHB2!0.65!20.86!PHB2;;chr3:114343768..114343822,-!p1@ZBTB20!0.65!17.49!ZBTB20;;chr14:61116183..61116208,-!p1@SIX1!0.65!15.01!SIX1;;chr12:10875351..10875422,-!p4@CSDA!0.65!7.30!CSDA;;chr12:26277817..26277863,-!p2@BHLHE41!0.65!4.97!BHLHE41;;chr6:34204921..34204939,+!p3@HMGA1!0.64!120.20!HMGA1;;chr15:41952591..41952672,+!p1@MGA!0.64!53.20!MGA;;chr11:67007548..67007610,+!p3@KDM2A!0.64!29.45!KDM2A;;chr7:99156393..99156433,+!p6@ZNF655!0.64!8.51!ZNF655;;chrX:131623044..131623089,-!p1@MBNL3!0.63!15.65!MBNL3;;chr6:126102292..126102329,+!p3@NCOA7!0.63!12.28!NCOA7;;chr5:134369879..134369898,-!p2@PITX1!0.63!3.29!PITX1;;chr6:10413188..10413249,-!p7@TFAP2A!0.63!3.29!TFAP2A;;chr12:57914286..57914304,-!p1@DDIT3!0.62!138.10!DDIT3;;chr6:126240380..126240430,+!p2@NCOA7!0.62!9.23!NCOA7;;chr5:137804405..137804444,+!p3@EGR1!0.62!3.93!EGR1;;chr11:65668011..65668020,-!p3@FOSL1!0.62!3.21!FOSL1;;chr18:55102598..55102623,+!p1@ONECUT2!0.62!3.21!ONECUT2;;chr3:169381183..169381205,-!p4@MECOM!0.62!3.21!MECOM;;chr12:54332608..54332636,+!p1@HOXC13!0.62!3.13!HOXC13;;chr6:21593973..21593988,+!p1@SOX4!0.61!132.56!SOX4;;chr12:27485823..27485868,+!p2@ARNTL2!0.61!14.44!ARNTL2;;chr16:54320646..54320672,-!p2@IRX3!0.61!5.06!IRX3;;chr7:99214559..99214601,+!p1@ZNF498!0.60!44.61!ZNF498;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.69!EGR1;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.59!124.21!ZKSCAN1;;chr11:128392273..128392308,-!p2@ETS1!0.59!14.68!ETS1;;chr12:66218255..66218304,+!p3@HMGA2!0.59!8.91!HMGA2;;chr7:86781858..86781879,+!p3@DMTF1!0.59!5.14!DMTF1;;chr17:38256822..38256851,-!p1@NR1D1!0.58!26.96!NR1D1;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.57!HIF1A;;chr7:92076740..92076834,+!p1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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/squamous%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aEBC-1.CNhs11273.10486-107A9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10486-107A9
 |is_a=EFO:0002091;;FF:0000210;;FF:0103001
 |is_obsolete=
-|library_ids=CNhs11273
+|library_id=CNhs11273
+|library_id_phase_based=2:CNhs11273
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10486
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10486
 |name=squamous cell lung carcinoma cell line:EBC-1
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11273,LSID758,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-|DRA_sample_Accession=CAGE@DRS007910
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FF:10486-107A9: Difference between revisions

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Latest revision as of 14:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0