FF:10434-106E2: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	oral squamous cell carcinoma cell line:Ca9-22
Species:	Human (Homo sapiens)
Library ID:	CNhs10752
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	Ca9-22
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005721

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10752		CAGE		DRX007972		DRR008844

Accession ID Hg19

Library id		BAM		CTSS
CNhs10752		DRZ000269		DRZ001654

Accession ID Hg38

Library id		BAM		CTSS
CNhs10752		DRZ011619		DRZ013004

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0184
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00704
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0511
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.22
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.144
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.771
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0.816
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.158
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0199
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0778
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0407
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0732
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0778
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0778
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10752

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0201
MA0003.1	MA0003.1	0.629
MA0004.1	MA0004.1	0.405
MA0006.1	MA0006.1	0.141
MA0007.1	MA0007.1	0.0924
MA0009.1	MA0009.1	0.407
MA0014.1	MA0014.1	0.12
MA0017.1	MA0017.1	0.565
MA0018.2	MA0018.2	0.286
MA0019.1	MA0019.1	0.744
MA0024.1	MA0024.1	0.0901
MA0025.1	MA0025.1	0.933
MA0027.1	MA0027.1	0.875
MA0028.1	MA0028.1	3.24707e-6
MA0029.1	MA0029.1	0.889
MA0030.1	MA0030.1	0.0253
MA0031.1	MA0031.1	0.264
MA0035.2	MA0035.2	0.934
MA0038.1	MA0038.1	0.00102
MA0039.2	MA0039.2	6.83014e-4
MA0040.1	MA0040.1	0.956
MA0041.1	MA0041.1	0.323
MA0042.1	MA0042.1	0.54
MA0043.1	MA0043.1	0.963
MA0046.1	MA0046.1	0.854
MA0047.2	MA0047.2	0.945
MA0048.1	MA0048.1	0.418
MA0050.1	MA0050.1	0.989
MA0051.1	MA0051.1	0.343
MA0052.1	MA0052.1	0.00267
MA0055.1	MA0055.1	0.0033
MA0057.1	MA0057.1	0.918
MA0058.1	MA0058.1	0.193
MA0059.1	MA0059.1	0.851
MA0060.1	MA0060.1	7.56572e-8
MA0061.1	MA0061.1	0.00106
MA0062.2	MA0062.2	4.63654e-7
MA0065.2	MA0065.2	0.665
MA0066.1	MA0066.1	0.212
MA0067.1	MA0067.1	0.444
MA0068.1	MA0068.1	0.182
MA0069.1	MA0069.1	0.644
MA0070.1	MA0070.1	0.731
MA0071.1	MA0071.1	0.491
MA0072.1	MA0072.1	0.958
MA0073.1	MA0073.1	0.922
MA0074.1	MA0074.1	0.437
MA0076.1	MA0076.1	7.12886e-6
MA0077.1	MA0077.1	0.489
MA0078.1	MA0078.1	0.435
MA0079.2	MA0079.2	0.104
MA0080.2	MA0080.2	2.6006e-5
MA0081.1	MA0081.1	0.0469
MA0083.1	MA0083.1	0.383
MA0084.1	MA0084.1	0.028
MA0087.1	MA0087.1	0.398
MA0088.1	MA0088.1	0.0845
MA0090.1	MA0090.1	0.157
MA0091.1	MA0091.1	1.81535e-4
MA0092.1	MA0092.1	0.119
MA0093.1	MA0093.1	0.266
MA0099.2	MA0099.2	2.93738e-9
MA0100.1	MA0100.1	0.875
MA0101.1	MA0101.1	0.0149
MA0102.2	MA0102.2	0.486
MA0103.1	MA0103.1	5.4569e-6
MA0104.2	MA0104.2	0.142
MA0105.1	MA0105.1	2.28146e-6
MA0106.1	MA0106.1	7.22198e-9
MA0107.1	MA0107.1	8.26378e-4
MA0108.2	MA0108.2	2.43101e-4
MA0111.1	MA0111.1	0.889
MA0112.2	MA0112.2	0.0733
MA0113.1	MA0113.1	0.17
MA0114.1	MA0114.1	0.417
MA0115.1	MA0115.1	0.733
MA0116.1	MA0116.1	0.0049
MA0117.1	MA0117.1	0.347
MA0119.1	MA0119.1	0.189
MA0122.1	MA0122.1	0.949
MA0124.1	MA0124.1	0.52
MA0125.1	MA0125.1	0.206
MA0131.1	MA0131.1	0.0923
MA0135.1	MA0135.1	0.6
MA0136.1	MA0136.1	0.0097
MA0137.2	MA0137.2	0.2
MA0138.2	MA0138.2	0.0375
MA0139.1	MA0139.1	0.133
MA0140.1	MA0140.1	0.301
MA0141.1	MA0141.1	0.0712
MA0142.1	MA0142.1	0.896
MA0143.1	MA0143.1	0.748
MA0144.1	MA0144.1	0.562
MA0145.1	MA0145.1	0.36
MA0146.1	MA0146.1	0.00139
MA0147.1	MA0147.1	0.144
MA0148.1	MA0148.1	0.446
MA0149.1	MA0149.1	0.136
MA0150.1	MA0150.1	0.00649
MA0152.1	MA0152.1	0.531
MA0153.1	MA0153.1	0.662
MA0154.1	MA0154.1	7.77116e-4
MA0155.1	MA0155.1	0.172
MA0156.1	MA0156.1	0.966
MA0157.1	MA0157.1	0.698
MA0159.1	MA0159.1	0.224
MA0160.1	MA0160.1	0.846
MA0162.1	MA0162.1	0.665
MA0163.1	MA0163.1	0.00837
MA0164.1	MA0164.1	0.931
MA0258.1	MA0258.1	0.291
MA0259.1	MA0259.1	0.569

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10752

Novel motif	Logo	P-value
1	1	0.759
10	10	0.617
100	100	0.514
101	101	0.606
102	102	0.164
103	103	0.647
104	104	0.891
105	105	0.71
106	106	0.00338
107	107	0.0866
108	108	0.853
109	109	0.164
11	11	0.425
110	110	0.673
111	111	0.893
112	112	0.571
113	113	0.308
114	114	0.323
115	115	0.66
116	116	0.29
117	117	0.0952
118	118	0.923
119	119	0.121
12	12	0.902
120	120	0.982
121	121	0.736
122	122	0.565
123	123	0.682
124	124	0.132
125	125	0.578
126	126	0.677
127	127	0.623
128	128	0.00126
129	129	0.78
13	13	0.144
130	130	0.734
131	131	0.252
132	132	0.87
133	133	0.0079
134	134	0.106
135	135	0.034
136	136	0.0349
137	137	0.0379
138	138	0.569
139	139	0.2
14	14	0.896
140	140	0.798
141	141	0.668
142	142	0.754
143	143	0.07
144	144	0.309
145	145	0.196
146	146	0.591
147	147	0.994
148	148	0.456
149	149	0.722
15	15	0.215
150	150	0.893
151	151	0.834
152	152	0.692
153	153	0.269
154	154	0.89
155	155	0.325
156	156	0.19
157	157	0.926
158	158	0.46
159	159	0.461
16	16	0.533
160	160	0.217
161	161	0.908
162	162	0.667
163	163	0.975
164	164	0.997
165	165	0.788
166	166	0.375
167	167	0.781
168	168	0.915
169	169	0.313
17	17	0.446
18	18	0.174
19	19	0.128
2	2	0.895
20	20	0.445
21	21	0.571
22	22	0.976
23	23	0.0948
24	24	0.132
25	25	0.893
26	26	0.841
27	27	0.391
28	28	0.385
29	29	0.783
3	3	0.461
30	30	0.397
31	31	0.113
32	32	0.00323
33	33	0.767
34	34	0.2
35	35	0.0382
36	36	0.314
37	37	0.821
38	38	0.817
39	39	0.54
4	4	0.805
40	40	0.701
41	41	0.0801
42	42	0.83
43	43	0.0642
44	44	0.418
45	45	0.669
46	46	0.151
47	47	0.987
48	48	0.709
49	49	0.0796
5	5	0.192
50	50	0.627
51	51	0.651
52	52	0.592
53	53	0.958
54	54	0.896
55	55	0.756
56	56	0.997
57	57	0.673
58	58	0.732
59	59	0.204
6	6	0.916
60	60	0.622
61	61	0.644
62	62	0.214
63	63	0.815
64	64	0.456
65	65	0.117
66	66	0.0124
67	67	0.422
68	68	0.0788
69	69	0.523
7	7	0.246
70	70	0.942
71	71	0.442
72	72	0.505
73	73	0.395
74	74	0.00648
75	75	0.355
76	76	0.989
77	77	0.638
78	78	0.67
79	79	7.14955e-5
8	8	0.139
80	80	0.0465
81	81	0.0539
82	82	0.383
83	83	0.219
84	84	0.673
85	85	0.204
86	86	0.889
87	87	0.00459
88	88	0.345
89	89	0.487
9	9	0.145
90	90	0.0732
91	91	0.24
92	92	0.18
93	93	0.656
94	94	0.0381
95	95	0.27
96	96	0.0668
97	97	0.714
98	98	0.149
99	99	0.386

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10752

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102211 oral squamous cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10434-106E2
+|DRA_sample_Accession=CAGE@SAMD00005721
-|name=oral squamous cell carcinoma cell line:Ca9-22, biol_rep1
+|accession_numbers=CAGE;DRX007972;DRR008844;DRZ000269;DRZ001654;DRZ011619;DRZ013004
-|sample_id=10434
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
-|rna_tube_id=106E2
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
-|rna_box=106
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749
-|rna_position=E2
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709
-|sample_cell_lot=
+|comment=
-|sample_cell_catalog=RCB1976
+|created_by=
-|sample_company=RIKEN Bioresource centre
+|creation_date=
-|rna_lot_number=
+|data_phase=2
-|rna_catalog_number=
+|datafreeze_phase=2
-|sample_species=Human (Homo sapiens)
+|def=
-|sample_strain=
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27153469,-!p2@HOXA3!0.76!4.81!HOXA3;;chr5:142780189..142780223,-!p6@NR3C1!0.76!4.71!NR3C1;;chr12:48298765..48298783,-!p2@VDR!0.75!10.40!VDR;;chr10:97889464..97889494,+!p3@ZNF518A!0.75!9.13!ZNF518A;;chr8:128748308..128748324,+!p2@MYC!0.73!136.92!MYC;;chr1:158979792..158979814,+!p2@IFI16!0.73!46.82!IFI16;;chr13:41593425..41593480,-!p1@ELF1!0.73!31.01!ELF1;;chr6:126102254..126102289,+!p5@NCOA7!0.73!13.25!NCOA7;;chr17:17740823..17740833,-!p8@SREBF1!0.73!4.42!SREBF1;;chr3:138665937..138665968,-!p1@FOXL2!0.73!4.32!FOXL2;;chr4:103423079..103423112,+!p4@NFKB1!0.73!4.32!NFKB1;;chr9:124976299..124976327,-!p3@LHX6!0.73!4.32!LHX6;;chr20:30193083..30193098,+!p1@ID1!0.72!384.54!ID1;;chr8:99956662..99956684,+!p1@OSR2!0.72!6.87!OSR2;;chr12:125002739..125002756,-!p6@NCOR2!0.72!6.58!NCOR2;;chr2:61108808..61108821,+!p3@REL!0.72!5.59!REL;;chr11:129245526..129245553,+!p1@BARX2!0.72!4.22!BARX2;;chr1:151032142..151032195,+!p5@MLLT11!0.71!8.44!MLLT11;;chr15:83953373..83953386,-!p2@BNC1!0.70!4.02!BNC1;;chr8:123875131..123875140,+!p25@ZHX2!0.70!4.02!ZHX2;;chr10:51565239..51565263,+!p2@NCOA4!0.69!105.21!NCOA4;;chr20:18038521..18038571,-!p1@OVOL2!0.69!3.93!OVOL2;;chr3:138665969..138665993,-!p2@FOXL2!0.69!3.93!FOXL2;;chr12:66218598..66218645,+!p2@HMGA2!0.68!19.83!HMGA2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.68!3.83!TFCP2L1;;chr9:1050331..1050363,+!p1@DMRT2!0.68!3.83!DMRT2;;chr6:15246261..15246312,+!p1@JARID2!0.67!102.66!JARID2;;chr8:49833978..49833996,-!p1@SNAI2!0.67!88.23!SNAI2;;chr8:128747757..128747800,+!p7@MYC!0.67!5.20!MYC;;chr8:123875147..123875159,+!p26@ZHX2!0.67!3.73!ZHX2;;chr18:55102598..55102623,+!p1@ONECUT2!0.67!3.63!ONECUT2;;chr4:38665810..38665827,+!p1@KLF3!0.66!61.15!KLF3;;chr19:8578683..8578750,-!p2@ZNF414!0.66!8.24!ZNF414;;chr3:168865194..168865245,-!p3@MECOM!0.66!4.81!MECOM;;chr13:100634130..100634143,+!p3@ZIC2!0.66!3.53!ZIC2;;chr1:209979449..209979460,-!p3@IRF6!0.66!3.53!IRF6;;chr12:80084737..80084763,-!p3@PAWR!0.65!15.02!PAWR;;chr6:126240380..126240430,+!p2@NCOA7!0.65!10.11!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.65!4.61!NCOA7;;chr15:67418047..67418093,+!p4@SMAD3!0.65!4.61!SMAD3;;chr17:80797863..80797874,-!p2@ZNF750!0.65!3.44!ZNF750;;chr8:71157578..71157592,-!p15@NCOA2!0.65!3.44!NCOA2;;chr1:92952473..92952489,-!p3@GFI1!0.65!3.44!GFI1;;chr20:46130619..46130664,+!p1@NCOA3!0.64!108.26!NCOA3;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.64!4.51!PRDM11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.64!3.34!HOXC5;;chr17:45928521..45928539,-!p1@SP6!0.64!3.34!SP6;;chr17:46703212..46703238,-!p2@HOXB9!0.64!3.34!HOXB9;;chr9:124991204..124991246,-!p1@LHX6!0.64!3.34!LHX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.34!TFAP2A;;chr21:40177845..40177863,+!p1@ETS2!0.63!232.12!ETS2;;chr12:19592405..19592492,+!p2@AEBP2!0.63!32.68!AEBP2;;chr9:127533519..127533573,-!p2@NR6A1!0.63!4.12!NR6A1;;chr1:40105299..40105326,-!p1@HEYL!0.63!3.24!HEYL;;chr3:193853927..193853944,+!p1@HES1!0.62!122.49!HES1;;chr7:64838786..64838809,+!p2@ZNF92!0.62!21.40!ZNF92;;chr2:178128149..178128198,-!p2@NFE2L2!0.62!20.12!NFE2L2;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.72!ARNTL2;;chr1:6479968..6479986,-!p1@HES2!0.62!3.14!HES2;;chr1:3569072..3569093,+!p1@TP73!0.61!3.04!TP73;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.04!HOXC13;;chr5:134369643..134369675,-!p4@PITX1!0.61!3.04!PITX1;;chr3:169381183..169381205,-!p4@MECOM!0.61!3.04!MECOM;;chr5:137801160..137801176,+!p1@EGR1!0.60!364.13!EGR1;;chr9:114287433..114287513,+!p1@ZNF483!0.60!8.93!ZNF483;;chr6:10412477..10412490,-!p10@TFAP2A!0.60!2.94!TFAP2A;;chr14:37132241..37132304,+!p3@PAX9!0.60!2.94!PAX9;;chr22:24093154..24093183,-!p2@ZNF70!0.60!2.94!ZNF70;;chr2:169312725..169312810,+!p1@CERS6!0.59!85.78!CERS6;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.59!27.29!ZNF319;;chr8:57123815..57123867,-!p1@PLAG1!0.59!13.94!PLAG1;;chr21:40177892..40177903,+!p2@ETS2!0.59!13.64!ETS2;;chr10:44101902..44101932,+!p2@ZNF485!0.59!6.58!ZNF485;;chr12:54379136..54379150,+!p4@HOXC5!0.59!2.85!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.59!2.85!HOXC10;;chr10:43133950..43133994,-!p2@ZNF33B!0.58!12.07!ZNF33B;;chr8:57123873..57123894,-!p2@PLAG1!0.58!4.32!PLAG1;;chr12:124457746..124457828,+!p1@ZNF664!0.57!128.67!ZNF664;;chr15:96875657..96875760,+!p14@NR2F2!0.57!4.91!NR2F2;;chr17:46703687..46703740,-!p1@HOXB9!0.57!2.75!HOXB9;;chr2:61108695..61108753,+!p1@REL!0.56!22.48!REL;;chr9:137218341..137218361,+!p2@RXRA!0.56!12.96!RXRA;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.97!SIX1;;chr7:55955139..55955190,+!p1@ZNF713,p2@MRPS17!0.56!8.05!ZNF713;;chr17:17723626..17723663,-!p4@SREBF1!0.56!6.09!SREBF1;;chr6:42419290..42419314,-!p5@TRERF1!0.56!3.53!TRERF1;;chr13:73636334..73636351,+!p6@KLF5!0.56!2.65!KLF5;;chr3:168865250..168865272,-!p5@MECOM!0.56!2.65!MECOM;;chr19:11071546..11071624,+!p2@SMARCA4!0.55!17.27!SMARCA4;;chr2:172967621..172967637,-!p1@DLX2!0.55!8.15!DLX2;;chr9:137218362..137218385,+!p4@RXRA!0.55!7.95!RXRA;;chr1:158979851..158979865,+!p5@IFI16!0.55!6.58!IFI16;;chr18:3449720..3449749,+!p2@TGIF1!0.55!6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-|sample_tissue=gum
-|sample_donor(cell lot)=
-|sample_sex=male
-|sample_age=unknown
-|sample_ethnicity=J
-|rna_rin=10.00000
-|rna_od260/230=1.76000
-|rna_od260/280=2.09000
-|sample_cell_type=unclassifiable
-|sample_cell_line=Ca9-22
-|sample_collaboration=Yukio Nakamura (RIKEN BRC)
-|sample_experimental_condition=
-|sample_disease=oral squamous cell carcinoma
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=50.47775
-|rna_concentration=2.01911
-|sample_note=machine failed, remainder reloaded, low amount
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-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
-|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000344,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000930,UBERON:0000974,UBERON:0001004,UBERON:0001007,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003343,UBERON:0003729,UBERON:0004111,UBERON:0004119,UBERON:0004785,UBERON:0004923,UBERON:0005423,UBERON:0005434,UBERON:0007026
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4,DOID:7
-|sample_description=
 |fonse_cell_line=FF:0101120,FF:0102027
 |fonse_cell_line_closure=FF:0101120,FF:0102027
@@ Line 67: / Line 40: @@
 |fonse_treatment=
 |fonse_treatment_closure=
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+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.nobarcode.rdna.fa.gz
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+|id=FF:10434-106E2
+|is_a=EFO:0002091;;FF:0000210;;FF:0102211
+|is_obsolete=
+|library_id=CNhs10752
+|library_id_phase_based=2:CNhs10752
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10434
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10434
+|name=oral squamous cell carcinoma cell line:Ca9-22
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+|rna_box=106
+|rna_catalog_number=
+|rna_concentration=2.01911
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=1.76
+|rna_od260/280=2.09
+|rna_position=E2
+|rna_rin=10
+|rna_sample_type=total RNA
+|rna_tube_id=1.06E+04
+|rna_weight_ug=50.47775
+|sample_age=unknown
+|sample_category=cell lines
+|sample_cell_catalog=RCB1976
+|sample_cell_line=Ca9-22
+|sample_cell_lot=
+|sample_cell_type=unclassifiable
+|sample_collaboration=Yukio Nakamura (RIKEN BRC)
+|sample_company=RIKEN Bioresource centre
+|sample_description=
+|sample_dev_stage=
+|sample_disease=oral squamous cell carcinoma
+|sample_donor(cell lot)=
+|sample_ethnicity=J
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.70882860811236e-234!GO:0005737;cytoplasm;2.11531673636828e-186!GO:0043226;organelle;1.6052151288926e-182!GO:0043229;intracellular organelle;4.67928689756379e-182!GO:0043227;membrane-bound organelle;8.62243570390258e-173!GO:0043231;intracellular membrane-bound organelle;8.62243570390258e-173!GO:0044422;organelle part;1.31938431090607e-142!GO:0044446;intracellular organelle part;1.04652926082735e-140!GO:0044444;cytoplasmic part;7.73215690301236e-124!GO:0032991;macromolecular complex;8.58567969416496e-96!GO:0044237;cellular metabolic process;1.23788888875658e-81!GO:0044238;primary metabolic process;7.0378733226716e-81!GO:0030529;ribonucleoprotein complex;1.92780710840861e-76!GO:0003723;RNA binding;6.23680784902646e-73!GO:0043170;macromolecule metabolic process;1.61411714220714e-72!GO:0043233;organelle lumen;1.3587117616728e-71!GO:0031974;membrane-enclosed lumen;1.3587117616728e-71!GO:0044428;nuclear part;2.78121998585943e-69!GO:0005634;nucleus;2.64811113106373e-68!GO:0005515;protein binding;3.98214692685283e-68!GO:0005739;mitochondrion;1.14648330410711e-56!GO:0019538;protein metabolic process;2.572382933795e-53!GO:0043234;protein complex;1.79913490265311e-50!GO:0031090;organelle membrane;1.44966695909383e-49!GO:0044267;cellular protein metabolic process;9.51406096152581e-48!GO:0044260;cellular macromolecule metabolic process;2.52575760283571e-47!GO:0005840;ribosome;5.50123682088667e-47!GO:0006396;RNA processing;6.4556795957754e-47!GO:0006412;translation;9.17981381179718e-47!GO:0031981;nuclear lumen;2.14741275879526e-44!GO:0016043;cellular component organization and biogenesis;2.77936497014028e-43!GO:0043283;biopolymer metabolic process;6.26482037172681e-42!GO:0033036;macromolecule localization;9.11623869792586e-42!GO:0015031;protein transport;1.7874993551172e-41!GO:0009058;biosynthetic process;3.56497308360694e-41!GO:0003735;structural constituent of ribosome;1.53716294112852e-40!GO:0005829;cytosol;2.48635178002059e-39!GO:0044249;cellular biosynthetic process;4.66530985343288e-39!GO:0008104;protein localization;1.41839320520969e-37!GO:0045184;establishment of protein localization;2.31330227577023e-37!GO:0016071;mRNA metabolic process;4.83599287360147e-37!GO:0043228;non-membrane-bound organelle;3.11683949120922e-36!GO:0043232;intracellular non-membrane-bound organelle;3.11683949120922e-36!GO:0033279;ribosomal subunit;2.41469929187565e-35!GO:0009059;macromolecule biosynthetic process;6.31795657846126e-35!GO:0044429;mitochondrial part;8.12566984181122e-35!GO:0010467;gene expression;1.61674908981112e-33!GO:0008380;RNA splicing;2.94041546276311e-32!GO:0031967;organelle envelope;3.49770651414081e-32!GO:0006397;mRNA processing;6.60832824447627e-32!GO:0031975;envelope;7.3461439949778e-32!GO:0046907;intracellular transport;1.25020842330962e-31!GO:0065003;macromolecular complex assembly;2.19476987805391e-31!GO:0006996;organelle organization and biogenesis;2.93673073127908e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.23889597318147e-30!GO:0005654;nucleoplasm;3.01587619677097e-28!GO:0006886;intracellular protein transport;7.53850076269482e-28!GO:0000166;nucleotide binding;9.9829690820127e-28!GO:0022607;cellular component assembly;1.8540190314896e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.58075313981147e-27!GO:0006259;DNA metabolic process;2.02417212396327e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.14778452277206e-26!GO:0012505;endomembrane system;3.96335391367443e-24!GO:0044451;nucleoplasm part;5.74570147545177e-23!GO:0005681;spliceosome;1.70698354412385e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.60949336548815e-22!GO:0016462;pyrophosphatase activity;5.8715787761364e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.8856323768526e-22!GO:0044445;cytosolic part;1.36645990118588e-21!GO:0016874;ligase activity;2.05686519274755e-21!GO:0005783;endoplasmic reticulum;2.95844482594005e-21!GO:0017111;nucleoside-triphosphatase activity;3.61554883940192e-21!GO:0051641;cellular localization;1.63902868701832e-20!GO:0051649;establishment of cellular localization;1.64316804142718e-20!GO:0006512;ubiquitin cycle;3.81805911755423e-20!GO:0007049;cell cycle;5.27175618967651e-20!GO:0005740;mitochondrial envelope;6.51643592563646e-20!GO:0006457;protein folding;1.62251217239441e-19!GO:0031966;mitochondrial membrane;2.23186443569978e-19!GO:0015935;small ribosomal subunit;3.01379085173237e-19!GO:0006119;oxidative phosphorylation;3.18578714114067e-19!GO:0032553;ribonucleotide binding;4.07236445799339e-19!GO:0032555;purine ribonucleotide binding;4.07236445799339e-19!GO:0017076;purine nucleotide binding;4.94917998662777e-19!GO:0019866;organelle inner membrane;6.09100379010191e-19!GO:0043412;biopolymer modification;7.39771450089639e-19!GO:0003676;nucleic acid binding;7.99370911099133e-19!GO:0043285;biopolymer catabolic process;2.80515993401791e-18!GO:0044265;cellular macromolecule catabolic process;3.19438017970786e-18!GO:0044432;endoplasmic reticulum part;4.0095547558436e-18!GO:0031980;mitochondrial lumen;5.37843784007894e-18!GO:0005759;mitochondrial matrix;5.37843784007894e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;6.60630467292937e-18!GO:0005730;nucleolus;7.38665268264621e-18!GO:0019941;modification-dependent protein catabolic process;1.29638155875145e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.29638155875145e-17!GO:0044257;cellular protein catabolic process;1.4531877367013e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.19064946371886e-17!GO:0048770;pigment granule;2.89107446141363e-17!GO:0042470;melanosome;2.89107446141363e-17!GO:0005743;mitochondrial inner membrane;3.60166679236126e-17!GO:0008134;transcription factor binding;3.79770130121763e-17!GO:0005524;ATP binding;4.52071030479138e-17!GO:0015934;large ribosomal subunit;4.6089024517883e-17!GO:0032559;adenyl ribonucleotide binding;7.83508378676768e-17!GO:0022618;protein-RNA complex assembly;1.25869308252438e-16!GO:0030554;adenyl nucleotide binding;1.40276027928148e-16!GO:0009057;macromolecule catabolic process;2.0595364509858e-16!GO:0006464;protein modification process;2.80463130842153e-16!GO:0008135;translation factor activity, nucleic acid binding;8.01752120859723e-16!GO:0005794;Golgi apparatus;8.72593216866337e-16!GO:0030163;protein catabolic process;1.01199021252479e-15!GO:0006974;response to DNA damage stimulus;1.6399168350993e-15!GO:0044248;cellular catabolic process;5.15904953896628e-15!GO:0044455;mitochondrial membrane part;5.7079485778682e-15!GO:0043687;post-translational protein modification;5.75979875716466e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.26546127892694e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.68801823027315e-14!GO:0006605;protein targeting;1.93738459872152e-14!GO:0022402;cell cycle process;3.2000707892674e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.63459353615765e-14!GO:0051082;unfolded protein binding;5.13158147629357e-14!GO:0005789;endoplasmic reticulum membrane;1.18366924133921e-13!GO:0016192;vesicle-mediated transport;1.58606359521263e-13!GO:0051276;chromosome organization and biogenesis;1.788254918851e-13!GO:0016070;RNA metabolic process;2.0059896059895e-13!GO:0016887;ATPase activity;2.50086742312175e-13!GO:0005761;mitochondrial ribosome;4.97776029190596e-13!GO:0000313;organellar ribosome;4.97776029190596e-13!GO:0000278;mitotic cell cycle;7.37398475919233e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.28335420663307e-12!GO:0006281;DNA repair;1.28335420663307e-12!GO:0005635;nuclear envelope;1.58500907824391e-12!GO:0048193;Golgi vesicle transport;1.58500907824391e-12!GO:0042623;ATPase activity, coupled;1.79848805550786e-12!GO:0005746;mitochondrial respiratory chain;1.81250848367778e-12!GO:0051186;cofactor metabolic process;2.06483265240898e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.48296371685678e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.91318128153254e-12!GO:0003743;translation initiation factor activity;3.61597223185481e-12!GO:0031965;nuclear membrane;4.2866149975106e-12!GO:0005694;chromosome;6.67888723343894e-12!GO:0006323;DNA packaging;9.45454538432494e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19539773225115e-11!GO:0000375;RNA splicing, via transesterification reactions;1.19539773225115e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19539773225115e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.19539773225115e-11!GO:0003954;NADH dehydrogenase activity;1.19539773225115e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19539773225115e-11!GO:0042254;ribosome biogenesis and assembly;1.40172291226101e-11!GO:0009719;response to endogenous stimulus;1.51750445916599e-11!GO:0006399;tRNA metabolic process;2.50676782404065e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.17070364348653e-11!GO:0004386;helicase activity;3.51817424380526e-11!GO:0016604;nuclear body;3.86154703262794e-11!GO:0006366;transcription from RNA polymerase II promoter;6.77398545873822e-11!GO:0044453;nuclear membrane part;7.55557002618462e-11!GO:0006732;coenzyme metabolic process;1.31794982487851e-10!GO:0012501;programmed cell death;1.36757606594765e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.44208707768314e-10!GO:0008639;small protein conjugating enzyme activity;2.25731242825556e-10!GO:0006413;translational initiation;2.27817547868097e-10!GO:0009055;electron carrier activity;2.31345916922568e-10!GO:0006915;apoptosis;2.65356265393937e-10!GO:0044427;chromosomal part;3.29124487683237e-10!GO:0006913;nucleocytoplasmic transport;3.61575215646178e-10!GO:0004842;ubiquitin-protein ligase activity;4.08046632505917e-10!GO:0019787;small conjugating protein ligase activity;4.13073486275608e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.21156901261285e-10!GO:0003712;transcription cofactor activity;5.27101786717512e-10!GO:0042775;organelle ATP synthesis coupled electron transport;5.44761630854117e-10!GO:0042773;ATP synthesis coupled electron transport;5.44761630854117e-10!GO:0051169;nuclear transport;6.71139709121848e-10!GO:0008026;ATP-dependent helicase activity;8.16108548835366e-10!GO:0030964;NADH dehydrogenase complex (quinone);8.88193027778327e-10!GO:0045271;respiratory chain complex I;8.88193027778327e-10!GO:0005747;mitochondrial respiratory chain complex I;8.88193027778327e-10!GO:0006461;protein complex assembly;1.07439986350639e-09!GO:0008565;protein transporter activity;1.31048517239715e-09!GO:0008219;cell death;1.38625858326386e-09!GO:0016265;death;1.38625858326386e-09!GO:0005768;endosome;1.5008716759856e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.971511184976e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.971511184976e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.971511184976e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.97234263884013e-09!GO:0016881;acid-amino acid ligase activity;2.14394037420248e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.16889236928054e-09!GO:0016607;nuclear speck;3.48758454212184e-09!GO:0009056;catabolic process;3.51202120285592e-09!GO:0006446;regulation of translational initiation;4.8153650744165e-09!GO:0005643;nuclear pore;4.89224938911652e-09!GO:0043038;amino acid activation;4.92340329666227e-09!GO:0006418;tRNA aminoacylation for protein translation;4.92340329666227e-09!GO:0043039;tRNA aminoacylation;4.92340329666227e-09!GO:0048475;coated membrane;5.11595776157617e-09!GO:0030117;membrane coat;5.11595776157617e-09!GO:0051188;cofactor biosynthetic process;5.54994407768804e-09!GO:0000087;M phase of mitotic cell cycle;6.57521406203801e-09!GO:0006403;RNA localization;7.3250865908552e-09!GO:0050657;nucleic acid transport;7.39133289013893e-09!GO:0051236;establishment of RNA localization;7.39133289013893e-09!GO:0050658;RNA transport;7.39133289013893e-09!GO:0000074;regulation of progression through cell cycle;9.7208609049803e-09!GO:0051726;regulation of cell cycle;1.12037691049283e-08!GO:0016787;hydrolase activity;1.29586637186629e-08!GO:0007067;mitosis;1.36608691444513e-08!GO:0015986;ATP synthesis coupled proton transport;1.41382640057734e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41382640057734e-08!GO:0022403;cell cycle phase;1.94317643266794e-08!GO:0009259;ribonucleotide metabolic process;2.05603159451294e-08!GO:0005793;ER-Golgi intermediate compartment;2.09219010894819e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.99124823084601e-08!GO:0006163;purine nucleotide metabolic process;5.28570208964308e-08!GO:0006260;DNA replication;5.34944396785664e-08!GO:0065004;protein-DNA complex assembly;5.47200665499629e-08!GO:0000785;chromatin;6.42002575088079e-08!GO:0019829;cation-transporting ATPase activity;6.61343074769741e-08!GO:0006164;purine nucleotide biosynthetic process;8.3383911524748e-08!GO:0006333;chromatin assembly or disassembly;9.02094368698242e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.14442435881682e-08!GO:0009260;ribonucleotide biosynthetic process;9.46754517862457e-08!GO:0016568;chromatin modification;9.71048594956153e-08!GO:0009108;coenzyme biosynthetic process;1.10221805890774e-07!GO:0009150;purine ribonucleotide metabolic process;1.28355994845666e-07!GO:0006793;phosphorus metabolic process;1.70082117608826e-07!GO:0006796;phosphate metabolic process;1.70082117608826e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.97349801848139e-07!GO:0006754;ATP biosynthetic process;2.03411680715759e-07!GO:0006753;nucleoside phosphate metabolic process;2.03411680715759e-07!GO:0032446;protein modification by small protein conjugation;2.0845265402427e-07!GO:0065002;intracellular protein transport across a membrane;2.16533526402948e-07!GO:0005667;transcription factor complex;2.23199100691835e-07!GO:0017038;protein import;2.39777197526984e-07!GO:0016567;protein ubiquitination;2.61788276019844e-07!GO:0051301;cell division;2.71267262272727e-07!GO:0030120;vesicle coat;2.86834313978258e-07!GO:0030662;coated vesicle membrane;2.86834313978258e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.35054894511593e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.75710773909522e-07!GO:0046930;pore complex;4.08696212600933e-07!GO:0016740;transferase activity;4.33035498110973e-07!GO:0006364;rRNA processing;4.77416425473804e-07!GO:0006752;group transfer coenzyme metabolic process;5.10080822684341e-07!GO:0051028;mRNA transport;5.54721836401868e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.70008971681972e-07!GO:0016072;rRNA metabolic process;6.42831178880622e-07!GO:0046034;ATP metabolic process;6.61547325764661e-07!GO:0016563;transcription activator activity;6.68932889423598e-07!GO:0048523;negative regulation of cellular process;6.73152044253085e-07!GO:0044431;Golgi apparatus part;7.39865412460893e-07!GO:0003924;GTPase activity;1.1410045429941e-06!GO:0044440;endosomal part;1.14853302257382e-06!GO:0010008;endosome membrane;1.14853302257382e-06!GO:0009141;nucleoside triphosphate metabolic process;1.22550268296921e-06!GO:0015630;microtubule cytoskeleton;1.25104886194741e-06!GO:0008654;phospholipid biosynthetic process;1.28212916286684e-06!GO:0051246;regulation of protein metabolic process;1.45230902993416e-06!GO:0043566;structure-specific DNA binding;1.45230902993416e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.62144003534117e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.62144003534117e-06!GO:0000151;ubiquitin ligase complex;1.65415209570623e-06!GO:0000279;M phase;1.95035660585781e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.01965758218918e-06!GO:0009060;aerobic respiration;2.0876963466978e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.19001443492716e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.19001443492716e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.49095155709787e-06!GO:0045786;negative regulation of progression through cell cycle;2.49943528819361e-06!GO:0007005;mitochondrion organization and biogenesis;2.76689888883932e-06!GO:0016310;phosphorylation;3.33925803369815e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.3578633171025e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.3578633171025e-06!GO:0045259;proton-transporting ATP synthase complex;3.4853418823707e-06!GO:0043067;regulation of programmed cell death;3.68754722414873e-06!GO:0042981;regulation of apoptosis;4.29961780266047e-06!GO:0003713;transcription coactivator activity;4.81235398958045e-06!GO:0005813;centrosome;5.1464655741153e-06!GO:0031324;negative regulation of cellular metabolic process;5.88074118129338e-06!GO:0005798;Golgi-associated vesicle;5.88074118129338e-06!GO:0005788;endoplasmic reticulum lumen;6.03553064763506e-06!GO:0043623;cellular protein complex assembly;6.10316575269235e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.42428493533035e-06!GO:0003697;single-stranded DNA binding;8.17671282596139e-06!GO:0003724;RNA helicase activity;8.82150054417785e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.108471168186e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.24031744038146e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.24031744038146e-05!GO:0048519;negative regulation of biological process;1.35194304041878e-05!GO:0005770;late endosome;1.37623908722959e-05!GO:0000245;spliceosome assembly;1.64110917302527e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.64583958837947e-05!GO:0006613;cotranslational protein targeting to membrane;1.65656268045989e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.69113720041181e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.78902347462542e-05!GO:0031988;membrane-bound vesicle;1.79540921554446e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.82568440585423e-05!GO:0051427;hormone receptor binding;1.87558868200966e-05!GO:0005815;microtubule organizing center;2.05359587835473e-05!GO:0016779;nucleotidyltransferase activity;2.21690823596586e-05!GO:0009117;nucleotide metabolic process;2.25368507335745e-05!GO:0045333;cellular respiration;2.37452287951634e-05!GO:0006099;tricarboxylic acid cycle;2.58899400735272e-05!GO:0046356;acetyl-CoA catabolic process;2.58899400735272e-05!GO:0004298;threonine endopeptidase activity;2.87962177546207e-05!GO:0051168;nuclear export;2.91075730982758e-05!GO:0030532;small nuclear ribonucleoprotein complex;3.13945800530885e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.29769140333504e-05!GO:0006606;protein import into nucleus;3.45027089313133e-05!GO:0006084;acetyl-CoA metabolic process;3.71374058209861e-05!GO:0035257;nuclear hormone receptor binding;3.94519451502718e-05!GO:0000139;Golgi membrane;4.05237980185317e-05!GO:0031497;chromatin assembly;4.19458183061928e-05!GO:0006334;nucleosome assembly;4.39850759689289e-05!GO:0005769;early endosome;4.89936187087342e-05!GO:0016564;transcription repressor activity;5.05867954273345e-05!GO:0019899;enzyme binding;5.09375810522095e-05!GO:0048471;perinuclear region of cytoplasm;5.67101472325436e-05!GO:0005773;vacuole;5.75088284621075e-05!GO:0051170;nuclear import;6.16658801890998e-05!GO:0030118;clathrin coat;6.36754482007758e-05!GO:0009892;negative regulation of metabolic process;6.41965935917265e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.59118747346227e-05!GO:0051329;interphase of mitotic cell cycle;6.68044556739569e-05!GO:0005525;GTP binding;6.86450429058607e-05!GO:0042802;identical protein binding;7.24276160731445e-05!GO:0016491;oxidoreductase activity;8.23059792418116e-05!GO:0031252;leading edge;9.38647146815416e-05!GO:0016853;isomerase activity;9.50480313487469e-05!GO:0007264;small GTPase mediated signal transduction;0.000103797206435565!GO:0031982;vesicle;0.000106573268939174!GO:0005819;spindle;0.000108754745635193!GO:0003690;double-stranded DNA binding;0.000112759519146749!GO:0043021;ribonucleoprotein binding;0.000120452425778859!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000124590994554283!GO:0007243;protein kinase cascade;0.000129919100518195!GO:0006612;protein targeting to membrane;0.000133995195541499!GO:0050794;regulation of cellular process;0.000135493607542622!GO:0005762;mitochondrial large ribosomal subunit;0.000138553426260545!GO:0000315;organellar large ribosomal subunit;0.000138553426260545!GO:0030119;AP-type membrane coat adaptor complex;0.000143678289089287!GO:0033116;ER-Golgi intermediate compartment membrane;0.000149069316674632!GO:0019843;rRNA binding;0.000177677412326691!GO:0045454;cell redox homeostasis;0.000178480180191123!GO:0030867;rough endoplasmic reticulum membrane;0.000178672447539529!GO:0031410;cytoplasmic vesicle;0.000190017044939069!GO:0043069;negative regulation of programmed cell death;0.000193255383844133!GO:0009109;coenzyme catabolic process;0.000193739889403333!GO:0000323;lytic vacuole;0.00020329414290351!GO:0005764;lysosome;0.00020329414290351!GO:0003729;mRNA binding;0.000203490710521173!GO:0003899;DNA-directed RNA polymerase activity;0.000210931563371547!GO:0046467;membrane lipid biosynthetic process;0.000212234754047514!GO:0015631;tubulin binding;0.000225846537913244!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000230164910736127!GO:0015399;primary active transmembrane transporter activity;0.000230164910736127!GO:0008250;oligosaccharyl transferase complex;0.000245644134037382!GO:0006402;mRNA catabolic process;0.000249529370565936!GO:0030131;clathrin adaptor complex;0.000256318496632486!GO:0005048;signal sequence binding;0.000265069665832653!GO:0008186;RNA-dependent ATPase activity;0.000269821041086266!GO:0004576;oligosaccharyl transferase activity;0.000273082867526419!GO:0016481;negative regulation of transcription;0.000282858713334341!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000306048383103089!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000364432131135497!GO:0004674;protein serine/threonine kinase activity;0.00039009794862106!GO:0043066;negative regulation of apoptosis;0.000393925013000916!GO:0008610;lipid biosynthetic process;0.00039812743103306!GO:0016197;endosome transport;0.000399738167979536!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000408723926083314!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000419683756182483!GO:0000314;organellar small ribosomal subunit;0.000432826768492804!GO:0005763;mitochondrial small ribosomal subunit;0.000432826768492804!GO:0051325;interphase;0.000436957541872572!GO:0006261;DNA-dependent DNA replication;0.000443756223149444!GO:0048522;positive regulation of cellular process;0.000443756223149444!GO:0051187;cofactor catabolic process;0.000483909574660705!GO:0008033;tRNA processing;0.000500304145212341!GO:0016859;cis-trans isomerase activity;0.000505178875050207!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000521669938953416!GO:0006916;anti-apoptosis;0.000525214036662205!GO:0006091;generation of precursor metabolites and energy;0.000556161716737681!GO:0046489;phosphoinositide biosynthetic process;0.000630531628457852!GO:0045893;positive regulation of transcription, DNA-dependent;0.000632318975831375!GO:0007051;spindle organization and biogenesis;0.00064576100543946!GO:0019752;carboxylic acid metabolic process;0.000659243692027668!GO:0065009;regulation of a molecular function;0.000702823799506528!GO:0051789;response to protein stimulus;0.000704248428514927!GO:0006986;response to unfolded protein;0.000704248428514927!GO:0003714;transcription corepressor activity;0.000749477847626805!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000767385873334698!GO:0006082;organic acid metabolic process;0.000772348372569772!GO:0004004;ATP-dependent RNA helicase activity;0.000794415720717445!GO:0032561;guanyl ribonucleotide binding;0.000814610683886789!GO:0019001;guanyl nucleotide binding;0.000814610683886789!GO:0006401;RNA catabolic process;0.000821897370038548!GO:0030880;RNA polymerase complex;0.000835522775037251!GO:0003682;chromatin binding;0.000868318640002416!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000869146750024393!GO:0046474;glycerophospholipid biosynthetic process;0.000885737686867533!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000914787869273949!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000945853914105247!GO:0051920;peroxiredoxin activity;0.000989100512203822!GO:0031072;heat shock protein binding;0.00108027689675348!GO:0046483;heterocycle metabolic process;0.00110325333539063!GO:0009967;positive regulation of signal transduction;0.00114431758242502!GO:0006352;transcription initiation;0.0012234960319563!GO:0018196;peptidyl-asparagine modification;0.00129458651606748!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00129458651606748!GO:0006520;amino acid metabolic process;0.00143185664759825!GO:0030658;transport vesicle membrane;0.00163184904962661!GO:0044452;nucleolar part;0.00164492378016378!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00164492378016378!GO:0000428;DNA-directed RNA polymerase complex;0.00164492378016378!GO:0051252;regulation of RNA metabolic process;0.00167901204554275!GO:0005885;Arp2/3 protein complex;0.00170290948055626!GO:0043624;cellular protein complex disassembly;0.00173548241708679!GO:0030176;integral to endoplasmic reticulum membrane;0.00175932135409255!GO:0008632;apoptotic program;0.00181691126469858!GO:0019867;outer membrane;0.00190761303242363!GO:0031968;organelle outer membrane;0.00200998250166109!GO:0016251;general RNA polymerase II transcription factor activity;0.00201441716959128!GO:0016363;nuclear matrix;0.00207528834495314!GO:0045941;positive regulation of transcription;0.00220182784799347!GO:0000049;tRNA binding;0.00220182784799347!GO:0050662;coenzyme binding;0.00220711375596718!GO:0006302;double-strand break repair;0.00234084266695014!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00239673581860448!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00239673581860448!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00239673581860448!GO:0006818;hydrogen transport;0.00246141660758479!GO:0030384;phosphoinositide metabolic process;0.00246141660758479!GO:0008017;microtubule binding;0.00248153005680538!GO:0008652;amino acid biosynthetic process;0.00249588467616055!GO:0009112;nucleobase metabolic process;0.00250124002961251!GO:0030132;clathrin coat of coated pit;0.00266462404352097!GO:0043492;ATPase activity, coupled to movement of substances;0.00270209791643923!GO:0015992;proton transport;0.00270209791643923!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00274123314791436!GO:0006650;glycerophospholipid metabolic process;0.00274973985608026!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00283627247741306!GO:0048500;signal recognition particle;0.00284413809708887!GO:0001726;ruffle;0.00290436103819128!GO:0030133;transport vesicle;0.00290548067878363!GO:0006414;translational elongation;0.00290739103589688!GO:0006891;intra-Golgi vesicle-mediated transport;0.00315707112958599!GO:0016791;phosphoric monoester hydrolase activity;0.00347620528918582!GO:0032984;macromolecular complex disassembly;0.00353304731724147!GO:0006405;RNA export from nucleus;0.00353598465207004!GO:0005905;coated pit;0.00365791905745417!GO:0051087;chaperone binding;0.0037361536073781!GO:0000082;G1/S transition of mitotic cell cycle;0.00382573083228667!GO:0008092;cytoskeletal protein binding;0.00382573083228667!GO:0007010;cytoskeleton organization and biogenesis;0.00413768010579193!GO:0005791;rough endoplasmic reticulum;0.00415792288804511!GO:0030036;actin cytoskeleton organization and biogenesis;0.00416783722750841!GO:0000775;chromosome, pericentric region;0.00420481312874318!GO:0012506;vesicle membrane;0.00429187123546444!GO:0048487;beta-tubulin binding;0.0043037597333606!GO:0005741;mitochondrial outer membrane;0.00466026261303458!GO:0030660;Golgi-associated vesicle membrane;0.00467444979290435!GO:0035258;steroid hormone receptor binding;0.00474718524415045!GO:0000786;nucleosome;0.00480345606291634!GO:0030663;COPI coated vesicle membrane;0.00482293854839758!GO:0030126;COPI vesicle coat;0.00482293854839758!GO:0030134;ER to Golgi transport vesicle;0.00484551497349125!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00496144773304729!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00496144773304729!GO:0030659;cytoplasmic vesicle membrane;0.00504760112528678!GO:0015980;energy derivation by oxidation of organic compounds;0.00507100492221325!GO:0007040;lysosome organization and biogenesis;0.0051858673680022!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00520978010070329!GO:0051052;regulation of DNA metabolic process;0.0053021088788765!GO:0003702;RNA polymerase II transcription factor activity;0.00530618197916168!GO:0003711;transcription elongation regulator activity;0.00547493679952052!GO:0005657;replication fork;0.00547692998537034!GO:0043488;regulation of mRNA stability;0.00553964379076021!GO:0043487;regulation of RNA stability;0.00553964379076021!GO:0003684;damaged DNA binding;0.00554068633673478!GO:0043241;protein complex disassembly;0.00566925020521153!GO:0007033;vacuole organization and biogenesis;0.00569726607706507!GO:0045792;negative regulation of cell size;0.00577513320407932!GO:0007242;intracellular signaling cascade;0.00579647250823418!GO:0016044;membrane organization and biogenesis;0.0058269663927717!GO:0022890;inorganic cation transmembrane transporter activity;0.00588730777561724!GO:0006383;transcription from RNA polymerase III promoter;0.0058946020794866!GO:0000075;cell cycle checkpoint;0.00590780313360645!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00593757470763856!GO:0006626;protein targeting to mitochondrion;0.00594131569975145!GO:0009165;nucleotide biosynthetic process;0.00594131569975145!GO:0006611;protein export from nucleus;0.00625106845209638!GO:0044433;cytoplasmic vesicle part;0.00634257224792231!GO:0006643;membrane lipid metabolic process;0.00637566289838944!GO:0043681;protein import into mitochondrion;0.00642147096928536!GO:0047485;protein N-terminus binding;0.00669560755357982!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00695008299686791!GO:0030032;lamellipodium biogenesis;0.00720177455311018!GO:0000059;protein import into nucleus, docking;0.00722057469727352!GO:0008312;7S RNA binding;0.00728588042707641!GO:0007050;cell cycle arrest;0.00762487981883089!GO:0006839;mitochondrial transport;0.00763512156506607!GO:0008094;DNA-dependent ATPase activity;0.00774780561258305!GO:0045045;secretory pathway;0.00776213890662511!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00784118109220177!GO:0006984;ER-nuclear signaling pathway;0.00784118109220177!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00789008366526346!GO:0045047;protein targeting to ER;0.00789008366526346!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00811953970625651!GO:0022411;cellular component disassembly;0.00812179449687233!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00825581742658104!GO:0008139;nuclear localization sequence binding;0.0082662491488886!GO:0005637;nuclear inner membrane;0.00838964605248932!GO:0043022;ribosome binding;0.00842974414867!GO:0016584;nucleosome positioning;0.00859167872184658!GO:0031625;ubiquitin protein ligase binding;0.00860036892028211!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00874488872963737!GO:0048037;cofactor binding;0.00882549403010312!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00882651761774643!GO:0050790;regulation of catalytic activity;0.00882651761774643!GO:0030137;COPI-coated vesicle;0.00882651761774643!GO:0006607;NLS-bearing substrate import into nucleus;0.00887374246078319!GO:0030308;negative regulation of cell growth;0.00918133132996866!GO:0045892;negative regulation of transcription, DNA-dependent;0.00930947891036655!GO:0008629;induction of apoptosis by intracellular signals;0.00937166419055414!GO:0000776;kinetochore;0.00939486585012588!GO:0006506;GPI anchor biosynthetic process;0.00992481174119587!GO:0005684;U2-dependent spliceosome;0.00994405389511066!GO:0030127;COPII vesicle coat;0.0100096219350961!GO:0012507;ER to Golgi transport vesicle membrane;0.0100096219350961!GO:0006289;nucleotide-excision repair;0.0103773653831408!GO:0008361;regulation of cell size;0.0103836313334325!GO:0006505;GPI anchor metabolic process;0.0104279843590695!GO:0046983;protein dimerization activity;0.0104610723605438!GO:0008022;protein C-terminus binding;0.0104610723605438!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0105315696627069!GO:0004721;phosphoprotein phosphatase activity;0.0107692516633069!GO:0003678;DNA helicase activity;0.0108792376675027!GO:0005774;vacuolar membrane;0.0109512199590931!GO:0030029;actin filament-based process;0.0111972178391964!GO:0030521;androgen receptor signaling pathway;0.0114594743736309!GO:0006595;polyamine metabolic process;0.0115663529000891!GO:0030125;clathrin vesicle coat;0.0115703742769067!GO:0030665;clathrin coated vesicle membrane;0.0115703742769067!GO:0006338;chromatin remodeling;0.0119502211823713!GO:0008097;5S rRNA binding;0.0121950167719599!GO:0031901;early endosome membrane;0.0127665799319361!GO:0007006;mitochondrial membrane organization and biogenesis;0.013122395830527!GO:0046966;thyroid hormone receptor binding;0.0131355013586588!GO:0032508;DNA duplex unwinding;0.0131769043593283!GO:0032392;DNA geometric change;0.0131769043593283!GO:0000118;histone deacetylase complex;0.0131769043593283!GO:0008234;cysteine-type peptidase activity;0.0134467295769956!GO:0016741;transferase activity, transferring one-carbon groups;0.013492246468876!GO:0008168;methyltransferase activity;0.0145958790395537!GO:0000339;RNA cap binding;0.0150433681514167!GO:0045926;negative regulation of growth;0.0154375710535246!GO:0016126;sterol biosynthetic process;0.0159575584367169!GO:0031902;late endosome membrane;0.0159719184187342!GO:0000096;sulfur amino acid metabolic process;0.0160080477326549!GO:0051540;metal cluster binding;0.0162207269147382!GO:0051536;iron-sulfur cluster binding;0.0162207269147382!GO:0005874;microtubule;0.0162220782849805!GO:0009451;RNA modification;0.0163638751311358!GO:0009116;nucleoside metabolic process;0.0163783531673929!GO:0007052;mitotic spindle organization and biogenesis;0.0165197605164656!GO:0007034;vacuolar transport;0.0166223333057663!GO:0016272;prefoldin complex;0.0167705945992509!GO:0051539;4 iron, 4 sulfur cluster binding;0.0171393955183903!GO:0017166;vinculin binding;0.0175970749910269!GO:0005832;chaperonin-containing T-complex;0.0176867663638606!GO:0008637;apoptotic mitochondrial changes;0.0178928122125312!GO:0006497;protein amino acid lipidation;0.0179525058901651!GO:0051338;regulation of transferase activity;0.0187231072648469!GO:0050789;regulation of biological process;0.0188800454692013!GO:0006644;phospholipid metabolic process;0.0189818123964543!GO:0031529;ruffle organization and biogenesis;0.0189970792045301!GO:0032259;methylation;0.0190616317718575!GO:0001558;regulation of cell growth;0.0192915076434344!GO:0006519;amino acid and derivative metabolic process;0.019365386703486!GO:0006144;purine base metabolic process;0.0195207240106135!GO:0043414;biopolymer methylation;0.0196085271564492!GO:0030031;cell projection biogenesis;0.0196376633998173!GO:0003725;double-stranded RNA binding;0.0198733482895978!GO:0007265;Ras protein signal transduction;0.0202790596696784!GO:0016049;cell growth;0.0212343139299001!GO:0022406;membrane docking;0.0215862282771529!GO:0048278;vesicle docking;0.0215862282771529!GO:0051287;NAD binding;0.0221179624545339!GO:0048518;positive regulation of biological process;0.0221565661718287!GO:0019783;small conjugating protein-specific protease activity;0.0224790726995098!GO:0030027;lamellipodium;0.0225277455600295!GO:0006213;pyrimidine nucleoside metabolic process;0.0226885005822545!GO:0031124;mRNA 3'-end processing;0.0227142843656367!GO:0006730;one-carbon compound metabolic process;0.0230603780962415!GO:0006284;base-excision repair;0.0231047100888856!GO:0044437;vacuolar part;0.0231932846554106!GO:0007093;mitotic cell cycle checkpoint;0.0234496324384675!GO:0007021;tubulin folding;0.0234577714466102!GO:0005669;transcription factor TFIID complex;0.0235285181722874!GO:0042393;histone binding;0.0235996848169938!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0235996848169938!GO:0015002;heme-copper terminal oxidase activity;0.0235996848169938!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0235996848169938!GO:0004129;cytochrome-c oxidase activity;0.0235996848169938!GO:0006904;vesicle docking during exocytosis;0.0237574409718565!GO:0006740;NADPH regeneration;0.0241374238795337!GO:0006098;pentose-phosphate shunt;0.0241374238795337!GO:0008180;signalosome;0.0243628090728525!GO:0006400;tRNA modification;0.0243785964591847!GO:0003746;translation elongation factor activity;0.0243785964591847!GO:0004527;exonuclease activity;0.0246046709564573!GO:0033673;negative regulation of kinase activity;0.024778161936486!GO:0006469;negative regulation of protein kinase activity;0.024778161936486!GO:0006672;ceramide metabolic process;0.0248081271859479!GO:0000086;G2/M transition of mitotic cell cycle;0.0249661433348306!GO:0016301;kinase activity;0.0257348133562756!GO:0004518;nuclease activity;0.0257926750374243!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0259928891396924!GO:0016311;dephosphorylation;0.0261767167096109!GO:0005856;cytoskeleton;0.0262832555303366!GO:0030518;steroid hormone receptor signaling pathway;0.0264192425062402!GO:0005765;lysosomal membrane;0.026469288675028!GO:0019222;regulation of metabolic process;0.0270108163328148!GO:0006892;post-Golgi vesicle-mediated transport;0.0271817609665688!GO:0008538;proteasome activator activity;0.0280792700354075!GO:0051348;negative regulation of transferase activity;0.0282484161735034!GO:0006695;cholesterol biosynthetic process;0.0283632310224929!GO:0006376;mRNA splice site selection;0.0283709807183327!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0283709807183327!GO:0007088;regulation of mitosis;0.0284099313021325!GO:0009081;branched chain family amino acid metabolic process;0.0286695842655007!GO:0006268;DNA unwinding during replication;0.0288089519797917!GO:0030140;trans-Golgi network transport vesicle;0.0292221969013728!GO:0043284;biopolymer biosynthetic process;0.0292730535323712!GO:0045334;clathrin-coated endocytic vesicle;0.029345842403636!GO:0008426;protein kinase C inhibitor activity;0.029345842403636!GO:0031371;ubiquitin conjugating enzyme complex;0.029345842403636!GO:0006564;L-serine biosynthetic process;0.0293850149751161!GO:0051098;regulation of binding;0.0299080293245077!GO:0004843;ubiquitin-specific protease activity;0.0299080293245077!GO:0006415;translational termination;0.0299342970405511!GO:0009303;rRNA transcription;0.0302078775978723!GO:0006979;response to oxidative stress;0.0305570185557451!GO:0046519;sphingoid metabolic process;0.0313910949869509!GO:0005784;translocon complex;0.0314785510416515!GO:0035035;histone acetyltransferase binding;0.0319925985883423!GO:0004177;aminopeptidase activity;0.0326574578994482!GO:0003756;protein disulfide isomerase activity;0.0343781153166277!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0343781153166277!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0343781153166277!GO:0005876;spindle microtubule;0.034437107055585!GO:0006354;RNA elongation;0.0350851456812263!GO:0046822;regulation of nucleocytoplasmic transport;0.035160936705465!GO:0006360;transcription from RNA polymerase I promoter;0.0357429184666695!GO:0050681;androgen receptor binding;0.0358011384015093!GO:0007017;microtubule-based process;0.0358623717180223!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0364831692703903!GO:0006509;membrane protein ectodomain proteolysis;0.0366154833292412!GO:0033619;membrane protein proteolysis;0.0366154833292412!GO:0009119;ribonucleoside metabolic process;0.0374676769905192!GO:0043549;regulation of kinase activity;0.0380932209058193!GO:0016407;acetyltransferase activity;0.0381828471071818!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0384790016774255!GO:0000123;histone acetyltransferase complex;0.038765325923363!GO:0043189;H4/H2A histone acetyltransferase complex;0.0387800426816689!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0396250774694385!GO:0006767;water-soluble vitamin metabolic process;0.0396792015278332!GO:0050811;GABA receptor binding;0.0402837312451191!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0410216694572601!GO:0004860;protein kinase inhibitor activity;0.0410364976648011!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0411045382228678!GO:0040029;regulation of gene expression, epigenetic;0.0413945919876883!GO:0051128;regulation of cellular component organization and biogenesis;0.0418042896055998!GO:0006378;mRNA polyadenylation;0.0419425606951287!GO:0030433;ER-associated protein catabolic process;0.0422970153595187!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0422970153595187!GO:0004221;ubiquitin thiolesterase activity;0.0436758329794383!GO:0031461;cullin-RING ubiquitin ligase complex;0.0438407008888389!GO:0031575;G1/S transition checkpoint;0.0442960210879312!GO:0006950;response to stress;0.0444887806443078!GO:0004300;enoyl-CoA hydratase activity;0.0446038076897504!GO:0048468;cell development;0.044750749736583!GO:0019511;peptidyl-proline hydroxylation;0.044750749736583!GO:0018208;peptidyl-proline modification;0.044750749736583!GO:0019471;4-hydroxyproline metabolic process;0.044750749736583!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.044750749736583!GO:0030911;TPR domain binding;0.045157318922756!GO:0042158;lipoprotein biosynthetic process;0.0454874855036932!GO:0060166;olfactory pit development;0.0455592173496267!GO:0021768;nucleus accumbens development;0.0455592173496267!GO:0002072;optic cup morphogenesis involved in camera-type eye development;0.0455592173496267!GO:0000209;protein polyubiquitination;0.0456307599172417!GO:0017134;fibroblast growth factor binding;0.0465017404068718!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0468662879715997!GO:0006518;peptide metabolic process;0.0471313177030067!GO:0006310;DNA recombination;0.0481338235934159!GO:0051101;regulation of DNA binding;0.0481823860887557!GO:0032200;telomere organization and biogenesis;0.0484779876384973!GO:0000723;telomere maintenance;0.0484779876384973!GO:0007041;lysosomal transport;0.0484798564237881!GO:0022415;viral reproductive process;0.048736566193593!GO:0005862;muscle thin filament tropomyosin;0.0492521971742404!GO:0001952;regulation of cell-matrix adhesion;0.0495723249444362!GO:0042026;protein refolding;0.0496042665684788
+|sample_id=10434
+|sample_note=machine failed, remainder reloaded, low amount
+|sample_sex=male
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=gum
+|top_motifs=ZEB1:1.95317290124;TP53:1.87899985738;VSX1,2:1.83436288344;SNAI1..3:1.70116321496;TBX4,5:1.51238018244;ARID5B:1.33416151933;bHLH_family:1.2661924352;FOXQ1:1.25952423126;ELK1,4_GABP{A,B1}:1.19647225519;RBPJ:1.08644945446;XCPE1{core}:1.07980206187;FOXN1:1.03807676507;NRF1:0.988412074244;HIF1A:0.911598524419;ADNP_IRX_SIX_ZHX:0.901402031251;SP1:0.891122633698;NFY{A,B,C}:0.841986715787;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.829166238246;NKX2-1,4:0.827250681066;MYOD1:0.770835171473;CDC5L:0.758694645231;PAX4:0.751360046842;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.747359141157;ZNF143:0.744499425195;EBF1:0.676263783717;SOX17:0.656907932222;FOXP1:0.617825787349;NFE2L2:0.596291614351;HSF1,2:0.591087114518;TEAD1:0.565779326278;ZNF148:0.535346944766;TFAP2{A,C}:0.519971410426;FOSL2:0.4958662932;BACH2:0.438184935829;FOS_FOS{B,L1}_JUN{B,D}:0.428093944828;RFX2..5_RFXANK_RFXAP:0.422301898916;PAX2:0.414229400479;ONECUT1,2:0.396389830138;HOX{A4,D4}:0.347754387237;NKX2-2,8:0.33863014058;HAND1,2:0.333079404767;PITX1..3:0.326846019602;NFE2:0.326842871678;FOX{F1,F2,J1}:0.326161223448;HOX{A6,A7,B6,B7}:0.323317496632;SOX2:0.317134008588;GFI1:0.316315535598;POU1F1:0.299310824277;E2F1..5:0.280702475015;SREBF1,2:0.271113460785;CEBPA,B_DDIT3:0.270405975889;BREu{core}:0.26737032859;IRF7:0.257383283953;NKX3-2:0.248659657508;YY1:0.21717301087;POU2F1..3:0.208423048329;TFDP1:0.189560731942;FOXM1:0.167727731231;LMO2:0.152722878136;LHX3,4:0.152660640238;TEF:0.152130238323;ELF1,2,4:0.147887769014;ZBTB6:0.141820054109;SOX{8,9,10}:0.119922324278;IKZF1:0.107448244173;MAZ:0.0975674906002;MYB:0.0700671773461;PAX1,9:0.0678701911404;ZFP161:0.0603007936365;RFX1:0.0520842885762;CREB1:0.0493222373393;TOPORS:0.0454244773849;PPARG:0.0436069948035;HOXA9_MEIS1:0.0426781225014;OCT4_SOX2{dimer}:0.00397816545412;EP300:-0.00675773063411;TFCP2:-0.00757721423303;FOX{D1,D2}:-0.0188527005761;CUX2:-0.0313860640063;NKX2-3_NKX2-5:-0.0456132429619;ZIC1..3:-0.0486808038038;CDX1,2,4:-0.0583992690315;TFAP2B:-0.0586643600209;CRX:-0.0604389023754;FOXO1,3,4:-0.0661729669086;FOX{I1,J2}:-0.0752199445284;TLX1..3_NFIC{dimer}:-0.0772886273316;AIRE:-0.0870954706459;RORA:-0.101691669513;NR5A1,2:-0.1025502033;MTF1:-0.122667935042;NKX3-1:-0.128891717386;HIC1:-0.131923960423;HNF1A:-0.154768114113;PAX3,7:-0.16062439002;NR1H4:-0.161666217889;RXR{A,B,G}:-0.162937195456;GFI1B:-0.164914154535;NANOG:-0.176142306309;ZNF384:-0.180443588282;ATF4:-0.183442366818;PDX1:-0.184504081399;HNF4A_NR2F1,2:-0.188925169645;NFIX:-0.205757071844;HLF:-0.213174307787;ESR1:-0.234414414201;T:-0.269498630903;LEF1_TCF7_TCF7L1,2:-0.280982737386;PBX1:-0.283415229054;GTF2A1,2:-0.29010512276;STAT5{A,B}:-0.295302891505;NKX6-1,2:-0.297783036541;MYBL2:-0.300355321382;GTF2I:-0.303694326092;SRF:-0.314680813815;ATF5_CREB3:-0.322819020081;NR6A1:-0.323792085399;FOXP3:-0.339285110326;EN1,2:-0.346923394534;GATA6:-0.349210097888;NFIL3:-0.353165428615;FOXA2:-0.36392220244;IRF1,2:-0.369070131105;MED-1{core}:-0.405490314454;NFKB1_REL_RELA:-0.415801298714;PAX5:-0.419025593223;MTE{core}:-0.425925216637;MAFB:-0.426374214689;POU5F1:-0.427871599313;RUNX1..3:-0.433454821308;SPIB:-0.439919745935;PAX8:-0.448665665038;ETS1,2:-0.461838554542;UFEwm:-0.462259204763;RREB1:-0.463731038632;ZNF423:-0.468024495556;EGR1..3:-0.472171638571;PRRX1,2:-0.515904047489;ZBTB16:-0.534619723129;MEF2{A,B,C,D}:-0.541782892993;ZNF238:-0.544212458171;AHR_ARNT_ARNT2:-0.56378469353;PAX6:-0.570206483833;PATZ1:-0.586599175708;AR:-0.590466337295;REST:-0.602249636569;SPZ1:-0.612360847959;HMGA1,2:-0.620865304183;HBP1_HMGB_SSRP1_UBTF:-0.622109757921;DMAP1_NCOR{1,2}_SMARC:-0.627198796757;ATF6:-0.627525555749;ATF2:-0.630434526596;NR3C1:-0.630929966254;MYFfamily:-0.648230156013;SPI1:-0.651940615099;GLI1..3:-0.6686692622;TGIF1:-0.6750938282;KLF4:-0.680846928454;HOX{A5,B5}:-0.69753263277;FOXD3:-0.697537247971;PRDM1:-0.709198099385;EVI1:-0.713147760301;TBP:-0.740819076686;GZF1:-0.742294873053;ALX1:-0.765792875503;SOX5:-0.766400057916;TAL1_TCF{3,4,12}:-0.780238074758;BPTF:-0.804538139284;POU6F1:-0.840776002343;SMAD1..7,9:-0.880003358185;XBP1:-0.886190340033;IKZF2:-0.890305506816;FOXL1:-0.911859380294;GCM1,2:-0.923973956202;RXRA_VDR{dimer}:-0.980243123628;POU3F1..4:-0.998110684776;TFAP4:-1.00207146485;STAT2,4,6:-1.01759809388;NFE2L1:-1.02215725918;NHLH1,2:-1.06168933796;ESRRA:-1.1062871624;MZF1:-1.11507278567;JUN:-1.12120730534;NANOG{mouse}:-1.18538629015;DBP:-1.21762425597;TLX2:-1.23849089956;HES1:-1.2689979811;ALX4:-1.33238109367;STAT1,3:-1.42650123533;GATA4:-1.43269509264;NFATC1..3:-1.55551716498;HMX1:-1.81991121532
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10434-106E2;search_select_hide=table117:FF:10434-106E2
 }}

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FF:10434-106E2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0