FF:10434-106E2: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	oral squamous cell carcinoma cell line:Ca9-22
Species:	Human (Homo sapiens)
Library ID:	CNhs10752
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	Ca9-22
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005721

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10752		CAGE		DRX007972		DRR008844

Accession ID Hg19

Library id		BAM		CTSS
CNhs10752		DRZ000269		DRZ001654

Accession ID Hg38

Library id		BAM		CTSS
CNhs10752		DRZ011619		DRZ013004

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0184
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00704
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0511
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.22
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.144
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.771
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0.816
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.158
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0199
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0778
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0407
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0732
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0778
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0778
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10752

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0201
MA0003.1	MA0003.1	0.629
MA0004.1	MA0004.1	0.405
MA0006.1	MA0006.1	0.141
MA0007.1	MA0007.1	0.0924
MA0009.1	MA0009.1	0.407
MA0014.1	MA0014.1	0.12
MA0017.1	MA0017.1	0.565
MA0018.2	MA0018.2	0.286
MA0019.1	MA0019.1	0.744
MA0024.1	MA0024.1	0.0901
MA0025.1	MA0025.1	0.933
MA0027.1	MA0027.1	0.875
MA0028.1	MA0028.1	3.24707e-6
MA0029.1	MA0029.1	0.889
MA0030.1	MA0030.1	0.0253
MA0031.1	MA0031.1	0.264
MA0035.2	MA0035.2	0.934
MA0038.1	MA0038.1	0.00102
MA0039.2	MA0039.2	6.83014e-4
MA0040.1	MA0040.1	0.956
MA0041.1	MA0041.1	0.323
MA0042.1	MA0042.1	0.54
MA0043.1	MA0043.1	0.963
MA0046.1	MA0046.1	0.854
MA0047.2	MA0047.2	0.945
MA0048.1	MA0048.1	0.418
MA0050.1	MA0050.1	0.989
MA0051.1	MA0051.1	0.343
MA0052.1	MA0052.1	0.00267
MA0055.1	MA0055.1	0.0033
MA0057.1	MA0057.1	0.918
MA0058.1	MA0058.1	0.193
MA0059.1	MA0059.1	0.851
MA0060.1	MA0060.1	7.56572e-8
MA0061.1	MA0061.1	0.00106
MA0062.2	MA0062.2	4.63654e-7
MA0065.2	MA0065.2	0.665
MA0066.1	MA0066.1	0.212
MA0067.1	MA0067.1	0.444
MA0068.1	MA0068.1	0.182
MA0069.1	MA0069.1	0.644
MA0070.1	MA0070.1	0.731
MA0071.1	MA0071.1	0.491
MA0072.1	MA0072.1	0.958
MA0073.1	MA0073.1	0.922
MA0074.1	MA0074.1	0.437
MA0076.1	MA0076.1	7.12886e-6
MA0077.1	MA0077.1	0.489
MA0078.1	MA0078.1	0.435
MA0079.2	MA0079.2	0.104
MA0080.2	MA0080.2	2.6006e-5
MA0081.1	MA0081.1	0.0469
MA0083.1	MA0083.1	0.383
MA0084.1	MA0084.1	0.028
MA0087.1	MA0087.1	0.398
MA0088.1	MA0088.1	0.0845
MA0090.1	MA0090.1	0.157
MA0091.1	MA0091.1	1.81535e-4
MA0092.1	MA0092.1	0.119
MA0093.1	MA0093.1	0.266
MA0099.2	MA0099.2	2.93738e-9
MA0100.1	MA0100.1	0.875
MA0101.1	MA0101.1	0.0149
MA0102.2	MA0102.2	0.486
MA0103.1	MA0103.1	5.4569e-6
MA0104.2	MA0104.2	0.142
MA0105.1	MA0105.1	2.28146e-6
MA0106.1	MA0106.1	7.22198e-9
MA0107.1	MA0107.1	8.26378e-4
MA0108.2	MA0108.2	2.43101e-4
MA0111.1	MA0111.1	0.889
MA0112.2	MA0112.2	0.0733
MA0113.1	MA0113.1	0.17
MA0114.1	MA0114.1	0.417
MA0115.1	MA0115.1	0.733
MA0116.1	MA0116.1	0.0049
MA0117.1	MA0117.1	0.347
MA0119.1	MA0119.1	0.189
MA0122.1	MA0122.1	0.949
MA0124.1	MA0124.1	0.52
MA0125.1	MA0125.1	0.206
MA0131.1	MA0131.1	0.0923
MA0135.1	MA0135.1	0.6
MA0136.1	MA0136.1	0.0097
MA0137.2	MA0137.2	0.2
MA0138.2	MA0138.2	0.0375
MA0139.1	MA0139.1	0.133
MA0140.1	MA0140.1	0.301
MA0141.1	MA0141.1	0.0712
MA0142.1	MA0142.1	0.896
MA0143.1	MA0143.1	0.748
MA0144.1	MA0144.1	0.562
MA0145.1	MA0145.1	0.36
MA0146.1	MA0146.1	0.00139
MA0147.1	MA0147.1	0.144
MA0148.1	MA0148.1	0.446
MA0149.1	MA0149.1	0.136
MA0150.1	MA0150.1	0.00649
MA0152.1	MA0152.1	0.531
MA0153.1	MA0153.1	0.662
MA0154.1	MA0154.1	7.77116e-4
MA0155.1	MA0155.1	0.172
MA0156.1	MA0156.1	0.966
MA0157.1	MA0157.1	0.698
MA0159.1	MA0159.1	0.224
MA0160.1	MA0160.1	0.846
MA0162.1	MA0162.1	0.665
MA0163.1	MA0163.1	0.00837
MA0164.1	MA0164.1	0.931
MA0258.1	MA0258.1	0.291
MA0259.1	MA0259.1	0.569

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10752

Novel motif	Logo	P-value
1	1	0.759
10	10	0.617
100	100	0.514
101	101	0.606
102	102	0.164
103	103	0.647
104	104	0.891
105	105	0.71
106	106	0.00338
107	107	0.0866
108	108	0.853
109	109	0.164
11	11	0.425
110	110	0.673
111	111	0.893
112	112	0.571
113	113	0.308
114	114	0.323
115	115	0.66
116	116	0.29
117	117	0.0952
118	118	0.923
119	119	0.121
12	12	0.902
120	120	0.982
121	121	0.736
122	122	0.565
123	123	0.682
124	124	0.132
125	125	0.578
126	126	0.677
127	127	0.623
128	128	0.00126
129	129	0.78
13	13	0.144
130	130	0.734
131	131	0.252
132	132	0.87
133	133	0.0079
134	134	0.106
135	135	0.034
136	136	0.0349
137	137	0.0379
138	138	0.569
139	139	0.2
14	14	0.896
140	140	0.798
141	141	0.668
142	142	0.754
143	143	0.07
144	144	0.309
145	145	0.196
146	146	0.591
147	147	0.994
148	148	0.456
149	149	0.722
15	15	0.215
150	150	0.893
151	151	0.834
152	152	0.692
153	153	0.269
154	154	0.89
155	155	0.325
156	156	0.19
157	157	0.926
158	158	0.46
159	159	0.461
16	16	0.533
160	160	0.217
161	161	0.908
162	162	0.667
163	163	0.975
164	164	0.997
165	165	0.788
166	166	0.375
167	167	0.781
168	168	0.915
169	169	0.313
17	17	0.446
18	18	0.174
19	19	0.128
2	2	0.895
20	20	0.445
21	21	0.571
22	22	0.976
23	23	0.0948
24	24	0.132
25	25	0.893
26	26	0.841
27	27	0.391
28	28	0.385
29	29	0.783
3	3	0.461
30	30	0.397
31	31	0.113
32	32	0.00323
33	33	0.767
34	34	0.2
35	35	0.0382
36	36	0.314
37	37	0.821
38	38	0.817
39	39	0.54
4	4	0.805
40	40	0.701
41	41	0.0801
42	42	0.83
43	43	0.0642
44	44	0.418
45	45	0.669
46	46	0.151
47	47	0.987
48	48	0.709
49	49	0.0796
5	5	0.192
50	50	0.627
51	51	0.651
52	52	0.592
53	53	0.958
54	54	0.896
55	55	0.756
56	56	0.997
57	57	0.673
58	58	0.732
59	59	0.204
6	6	0.916
60	60	0.622
61	61	0.644
62	62	0.214
63	63	0.815
64	64	0.456
65	65	0.117
66	66	0.0124
67	67	0.422
68	68	0.0788
69	69	0.523
7	7	0.246
70	70	0.942
71	71	0.442
72	72	0.505
73	73	0.395
74	74	0.00648
75	75	0.355
76	76	0.989
77	77	0.638
78	78	0.67
79	79	7.14955e-5
8	8	0.139
80	80	0.0465
81	81	0.0539
82	82	0.383
83	83	0.219
84	84	0.673
85	85	0.204
86	86	0.889
87	87	0.00459
88	88	0.345
89	89	0.487
9	9	0.145
90	90	0.0732
91	91	0.24
92	92	0.18
93	93	0.656
94	94	0.0381
95	95	0.27
96	96	0.0668
97	97	0.714
98	98	0.149
99	99	0.386

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10752

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102211 oral squamous cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004785 (respiratory system mucosa)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004923,UBERON:0000161,UBERON:0005423,UBERON:0001444,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0004785,UBERON:0000925,UBERON:0003729,UBERON:0006598,UBERON:0002532,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0000165,UBERON:0007026,UBERON:0000166,UBERON:0000930,UBERON:0006601,UBERON:0006595
+|DRA_sample_Accession=CAGE@SAMD00005721
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000220,CL:0000004,CL:0000255,CL:0002076,CL:0002251,CL:0000223
+|accession_numbers=CAGE;DRX007972;DRR008844;DRZ000269;DRZ001654;DRZ011619;DRZ013004
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004785,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:189507432..189507459,+!p1@TP63!2.27!186.78!TP63;;chr11:34642612..34642646,+!p1@EHF!1.92!83.03!EHF;;chr1:209979467..209979494,-!p1@IRF6!1.88!83.92!IRF6;;chr8:10588010..10588030,-!p1@SOX7!1.82!64.78!SOX7;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.85!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.67!45.74!GRHL2;;chr14:37131058..37131139,+!p1@PAX9!1.64!42.69!PAX9;;chr3:181429704..181429722,+!p1@SOX2!1.62!40.83!SOX2;;chr1:209979411..209979433,-!p2@IRF6!1.62!40.34!IRF6;;chr17:7493405..7493419,-!p1@SOX15!1.59!37.79!SOX15;;chr1:201979703..201979721,+!p2@ELF3!1.53!33.17!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.53!33.17!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.47!28.66!IRX2;;chr5:134369905..134369972,-!p1@PITX1!1.45!41.12!PITX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.43!38.96!ZNF385A;;chr17:80797886..80797906,-!p1@ZNF750!1.42!25.22!ZNF750;;chr17:48072574..48072597,-!p1@DLX3!1.41!24.64!DLX3;;chr15:83953397..83953425,-!p1@BNC1!1.40!27.68!BNC1;;chr12:54785054..54785072,-!p4@ZNF385A!1.38!25.71!ZNF385A;;chr17:7492684..7492778,-!p2@SOX15!1.36!45.54!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.34!34.45!TFAP2A;;chr20:55204351..55204377,+!p1@TFAP2C!1.25!21.40!TFAP2C;;chr13:73633131..73633149,+!p1@KLF5!1.24!169.89!KLF5;;chr3:181429741..181429767,+!p2@SOX2!1.24!16.49!SOX2;;chr7:101917447..101917479,+!p4@CUX1!1.23!16.10!CUX1;;chrY:2803415..2803468,+!p1@ZFY!1.23!16.00!ZFY;;chr11:120107344..120107351,+!p1@POU2F3!1.20!17.76!POU2F3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.20!14.92!LRRFIP1;;chr6:28321909..28321965,-!p3@ZNF323!1.20!14.72!ZNF323;;chr8:102504979..102505010,+!p2@GRHL2!1.20!14.72!GRHL2;;chr6:10412392..10412409,-!p4@TFAP2A!1.18!16.19!TFAP2A;;chr3:189507460..189507471,+!p3@TP63!1.16!13.54!TP63;;chrY:21906594..21906622,-!p1@KDM5D!1.15!13.25!KDM5D;;chr3:168864315..168864339,-!p2@MECOM!1.13!20.81!MECOM;;chr10:48355030..48355090,+!p1@ZNF488!1.13!16.29!ZNF488;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.23!GATA3;;chr11:34642656..34642667,+!p2@EHF!1.11!11.78!EHF;;chr17:17726907..17726958,-!p2@SREBF1!1.08!69.39!SREBF1;;chr8:123875520..123875536,+!p7@ZHX2!1.08!10.99!ZHX2;;chr2:166326200..166326216,+!p1@CSRNP3!1.07!15.80!CSRNP3;;chr6:10415276..10415341,-!p2@TFAP2A!1.06!12.86!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!1.04!10.01!ZNF165;;chr6:10415484..10415508,-!p3@TFAP2A!1.02!9.52!TFAP2A;;chr7:27135591..27135658,-!p1@HOXA1!1.00!17.57!HOXA1;;chr8:102504690..102504704,+!p3@GRHL2!0.99!8.83!GRHL2;;chr17:48045917..48045977,+!p1@DLX4!0.98!8.64!DLX4;;chr6:28321971..28321995,-!p1@ZNF323!0.98!8.54!ZNF323;;chr7:101917407..101917443,+!p3@CUX1!0.98!8.54!CUX1;;chr8:71157595..71157616,-!p13@NCOA2!0.98!8.44!NCOA2;;chr21:36421535..36421610,-!p2@RUNX1!0.96!30.13!RUNX1;;chr6:85473156..85473210,-!p2@TBX18!0.96!10.11!TBX18;;chr6:10413188..10413249,-!p7@TFAP2A!0.96!8.15!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!0.96!8.05!IRX2;;chr19:45971246..45971265,+!p1@FOSB!0.95!153.99!FOSB;;chr6:15246200..15246214,+!p2@JARID2!0.95!22.28!JARID2;;chr12:53625966..53626012,-!p2@RARG!0.95!21.40!RARG;;chr8:123875175..123875188,+!p22@ZHX2!0.95!7.85!ZHX2;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.60!TSC22D3;;chr9:137263790..137263815,+!p7@RXRA!0.93!7.46!RXRA;;chr11:64073848..64073856,+!p6@ESRRA!0.92!7.26!ESRRA;;chr3:189507523..189507535,+!p5@TP63!0.91!7.16!TP63;;chr9:137217986..137218049,+!p3@RXRA!0.90!20.51!RXRA;;chr12:125002861..125002894,-!p7@NCOR2!0.90!10.60!NCOR2;;chr12:54378923..54378966,+!p1@HOXC10!0.90!6.97!HOXC10;;chr9:137218281..137218340,+!p1@RXRA!0.89!203.75!RXRA;;chr2:46524897..46524911,+!p2@EPAS1!0.88!19.24!EPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.86!58.59!PPP1R13L;;chrX:107019163..107019179,-!p7@TSC22D3!0.86!7.26!TSC22D3;;chr15:67418119..67418162,+!p5@SMAD3!0.86!6.97!SMAD3;;chr12:125002827..125002855,-!p5@NCOR2!0.85!8.83!NCOR2;;chr18:19749541..19749557,+!p1@GATA6!0.84!19.83!GATA6;;chr6:1389789..1389821,+!p1@FOXF2!0.84!8.34!FOXF2;;chr3:169381420..169381535,-!p1@MECOM!0.84!6.97!MECOM;;chr10:64576105..64576133,-!p1@EGR2!0.83!12.46!EGR2;;chr7:101917482..101917507,+!p6@CUX1!0.83!5.69!CUX1;;chr19:33793430..33793447,-!p1@CEBPA!0.82!25.52!CEBPA;;chr19:33865009..33865090,+!p3@CEBPG!0.82!7.75!CEBPG;;chr13:73636252..73636307,+!p2@KLF5!0.82!6.58!KLF5;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.59!HOXD8;;chr20:50721803..50721857,-!p2@ZFP64!0.81!8.93!ZFP64;;chr9:129376201..129376225,+!p1@LMX1B!0.81!5.50!LMX1B;;chr9:124976328..124976372,-!p2@LHX6!0.80!5.30!LHX6;;chr9:110252035..110252057,-!p1@KLF4!0.79!89.41!KLF4;;chr20:46130672..46130686,+!p2@NCOA3!0.79!24.73!NCOA3;;chr1:158979872..158979898,+!p3@IFI16!0.79!16.98!IFI16;;chr12:54380404..54380433,+!p3@HOXC10!0.78!5.01!HOXC10;;chr14:38064429..38064486,-!p1@FOXA1!0.78!5.01!FOXA1;;chr17:17740287..17740307,-!p1@SREBF1!0.77!141.04!SREBF1;;chr8:49833948..49833973,-!p2@SNAI2!0.77!34.06!SNAI2;;chr10:43134001..43134026,-!p1@ZNF33B!0.77!24.05!ZNF33B;;chr6:126102292..126102329,+!p3@NCOA7!0.77!17.37!NCOA7;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.77!11.19!ZNF395;;chr7:27153454..27153469,-!p2@HOXA3!0.76!4.81!HOXA3;;chr5:142780189..142780223,-!p6@NR3C1!0.76!4.71!NR3C1;;chr12:48298765..48298783,-!p2@VDR!0.75!10.40!VDR;;chr10:97889464..97889494,+!p3@ZNF518A!0.75!9.13!ZNF518A;;chr8:128748308..128748324,+!p2@MYC!0.73!136.92!MYC;;chr1:158979792..158979814,+!p2@IFI16!0.73!46.82!IFI16;;chr13:41593425..41593480,-!p1@ELF1!0.73!31.01!ELF1;;chr6:126102254..126102289,+!p5@NCOA7!0.73!13.25!NCOA7;;chr17:17740823..17740833,-!p8@SREBF1!0.73!4.42!SREBF1;;chr3:138665937..138665968,-!p1@FOXL2!0.73!4.32!FOXL2;;chr4:103423079..103423112,+!p4@NFKB1!0.73!4.32!NFKB1;;chr9:124976299..124976327,-!p3@LHX6!0.73!4.32!LHX6;;chr20:30193083..30193098,+!p1@ID1!0.72!384.54!ID1;;chr8:99956662..99956684,+!p1@OSR2!0.72!6.87!OSR2;;chr12:125002739..125002756,-!p6@NCOR2!0.72!6.58!NCOR2;;chr2:61108808..61108821,+!p3@REL!0.72!5.59!REL;;chr11:129245526..129245553,+!p1@BARX2!0.72!4.22!BARX2;;chr1:151032142..151032195,+!p5@MLLT11!0.71!8.44!MLLT11;;chr15:83953373..83953386,-!p2@BNC1!0.70!4.02!BNC1;;chr8:123875131..123875140,+!p25@ZHX2!0.70!4.02!ZHX2;;chr10:51565239..51565263,+!p2@NCOA4!0.69!105.21!NCOA4;;chr20:18038521..18038571,-!p1@OVOL2!0.69!3.93!OVOL2;;chr3:138665969..138665993,-!p2@FOXL2!0.69!3.93!FOXL2;;chr12:66218598..66218645,+!p2@HMGA2!0.68!19.83!HMGA2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.68!3.83!TFCP2L1;;chr9:1050331..1050363,+!p1@DMRT2!0.68!3.83!DMRT2;;chr6:15246261..15246312,+!p1@JARID2!0.67!102.66!JARID2;;chr8:49833978..49833996,-!p1@SNAI2!0.67!88.23!SNAI2;;chr8:128747757..128747800,+!p7@MYC!0.67!5.20!MYC;;chr8:123875147..123875159,+!p26@ZHX2!0.67!3.73!ZHX2;;chr18:55102598..55102623,+!p1@ONECUT2!0.67!3.63!ONECUT2;;chr4:38665810..38665827,+!p1@KLF3!0.66!61.15!KLF3;;chr19:8578683..8578750,-!p2@ZNF414!0.66!8.24!ZNF414;;chr3:168865194..168865245,-!p3@MECOM!0.66!4.81!MECOM;;chr13:100634130..100634143,+!p3@ZIC2!0.66!3.53!ZIC2;;chr1:209979449..209979460,-!p3@IRF6!0.66!3.53!IRF6;;chr12:80084737..80084763,-!p3@PAWR!0.65!15.02!PAWR;;chr6:126240380..126240430,+!p2@NCOA7!0.65!10.11!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.65!4.61!NCOA7;;chr15:67418047..67418093,+!p4@SMAD3!0.65!4.61!SMAD3;;chr17:80797863..80797874,-!p2@ZNF750!0.65!3.44!ZNF750;;chr8:71157578..71157592,-!p15@NCOA2!0.65!3.44!NCOA2;;chr1:92952473..92952489,-!p3@GFI1!0.65!3.44!GFI1;;chr20:46130619..46130664,+!p1@NCOA3!0.64!108.26!NCOA3;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.64!4.51!PRDM11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.64!3.34!HOXC5;;chr17:45928521..45928539,-!p1@SP6!0.64!3.34!SP6;;chr17:46703212..46703238,-!p2@HOXB9!0.64!3.34!HOXB9;;chr9:124991204..124991246,-!p1@LHX6!0.64!3.34!LHX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.34!TFAP2A;;chr21:40177845..40177863,+!p1@ETS2!0.63!232.12!ETS2;;chr12:19592405..19592492,+!p2@AEBP2!0.63!32.68!AEBP2;;chr9:127533519..127533573,-!p2@NR6A1!0.63!4.12!NR6A1;;chr1:40105299..40105326,-!p1@HEYL!0.63!3.24!HEYL;;chr3:193853927..193853944,+!p1@HES1!0.62!122.49!HES1;;chr7:64838786..64838809,+!p2@ZNF92!0.62!21.40!ZNF92;;chr2:178128149..178128198,-!p2@NFE2L2!0.62!20.12!NFE2L2;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.72!ARNTL2;;chr1:6479968..6479986,-!p1@HES2!0.62!3.14!HES2;;chr1:3569072..3569093,+!p1@TP73!0.61!3.04!TP73;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.04!HOXC13;;chr5:134369643..134369675,-!p4@PITX1!0.61!3.04!PITX1;;chr3:169381183..169381205,-!p4@MECOM!0.61!3.04!MECOM;;chr5:137801160..137801176,+!p1@EGR1!0.60!364.13!EGR1;;chr9:114287433..114287513,+!p1@ZNF483!0.60!8.93!ZNF483;;chr6:10412477..10412490,-!p10@TFAP2A!0.60!2.94!TFAP2A;;chr14:37132241..37132304,+!p3@PAX9!0.60!2.94!PAX9;;chr22:24093154..24093183,-!p2@ZNF70!0.60!2.94!ZNF70;;chr2:169312725..169312810,+!p1@CERS6!0.59!85.78!CERS6;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.59!27.29!ZNF319;;chr8:57123815..57123867,-!p1@PLAG1!0.59!13.94!PLAG1;;chr21:40177892..40177903,+!p2@ETS2!0.59!13.64!ETS2;;chr10:44101902..44101932,+!p2@ZNF485!0.59!6.58!ZNF485;;chr12:54379136..54379150,+!p4@HOXC5!0.59!2.85!HOXC5;;chr12:54380036..54380091,+!p4@HOXC10!0.59!2.85!HOXC10;;chr10:43133950..43133994,-!p2@ZNF33B!0.58!12.07!ZNF33B;;chr8:57123873..57123894,-!p2@PLAG1!0.58!4.32!PLAG1;;chr12:124457746..124457828,+!p1@ZNF664!0.57!128.67!ZNF664;;chr15:96875657..96875760,+!p14@NR2F2!0.57!4.91!NR2F2;;chr17:46703687..46703740,-!p1@HOXB9!0.57!2.75!HOXB9;;chr2:61108695..61108753,+!p1@REL!0.56!22.48!REL;;chr9:137218341..137218361,+!p2@RXRA!0.56!12.96!RXRA;;chr14:61116183..61116208,-!p1@SIX1!0.56!11.97!SIX1;;chr7:55955139..55955190,+!p1@ZNF713,p2@MRPS17!0.56!8.05!ZNF713;;chr17:17723626..17723663,-!p4@SREBF1!0.56!6.09!SREBF1;;chr6:42419290..42419314,-!p5@TRERF1!0.56!3.53!TRERF1;;chr13:73636334..73636351,+!p6@KLF5!0.56!2.65!KLF5;;chr3:168865250..168865272,-!p5@MECOM!0.56!2.65!MECOM;;chr19:11071546..11071624,+!p2@SMARCA4!0.55!17.27!SMARCA4;;chr2:172967621..172967637,-!p1@DLX2!0.55!8.15!DLX2;;chr9:137218362..137218385,+!p4@RXRA!0.55!7.95!RXRA;;chr1:158979851..158979865,+!p5@IFI16!0.55!6.58!IFI16;;chr18:3449720..3449749,+!p2@TGIF1!0.55!6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+|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0101120,FF:0102027
 |fonse_cell_line_closure=FF:0101120,FF:0102027
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aCa9-22.CNhs10752.10434-106E2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10434-106E2
 |is_a=EFO:0002091;;FF:0000210;;FF:0102211
 |is_obsolete=
+|library_id=CNhs10752
+|library_id_phase_based=2:CNhs10752
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10434
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10434
 |name=oral squamous cell carcinoma cell line:Ca9-22
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10752,LSID692,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 55: / Line 75: @@
 |rna_rin=10
 |rna_sample_type=total RNA
-|rna_tube_id=106E2
+|rna_tube_id=1.06E+04
 |rna_weight_ug=50.47775
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB1976
 |sample_cell_line=Ca9-22
@@ Line 79: / Line 100: @@
 |top_motifs=ZEB1:1.95317290124;TP53:1.87899985738;VSX1,2:1.83436288344;SNAI1..3:1.70116321496;TBX4,5:1.51238018244;ARID5B:1.33416151933;bHLH_family:1.2661924352;FOXQ1:1.25952423126;ELK1,4_GABP{A,B1}:1.19647225519;RBPJ:1.08644945446;XCPE1{core}:1.07980206187;FOXN1:1.03807676507;NRF1:0.988412074244;HIF1A:0.911598524419;ADNP_IRX_SIX_ZHX:0.901402031251;SP1:0.891122633698;NFY{A,B,C}:0.841986715787;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.829166238246;NKX2-1,4:0.827250681066;MYOD1:0.770835171473;CDC5L:0.758694645231;PAX4:0.751360046842;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.747359141157;ZNF143:0.744499425195;EBF1:0.676263783717;SOX17:0.656907932222;FOXP1:0.617825787349;NFE2L2:0.596291614351;HSF1,2:0.591087114518;TEAD1:0.565779326278;ZNF148:0.535346944766;TFAP2{A,C}:0.519971410426;FOSL2:0.4958662932;BACH2:0.438184935829;FOS_FOS{B,L1}_JUN{B,D}:0.428093944828;RFX2..5_RFXANK_RFXAP:0.422301898916;PAX2:0.414229400479;ONECUT1,2:0.396389830138;HOX{A4,D4}:0.347754387237;NKX2-2,8:0.33863014058;HAND1,2:0.333079404767;PITX1..3:0.326846019602;NFE2:0.326842871678;FOX{F1,F2,J1}:0.326161223448;HOX{A6,A7,B6,B7}:0.323317496632;SOX2:0.317134008588;GFI1:0.316315535598;POU1F1:0.299310824277;E2F1..5:0.280702475015;SREBF1,2:0.271113460785;CEBPA,B_DDIT3:0.270405975889;BREu{core}:0.26737032859;IRF7:0.257383283953;NKX3-2:0.248659657508;YY1:0.21717301087;POU2F1..3:0.208423048329;TFDP1:0.189560731942;FOXM1:0.167727731231;LMO2:0.152722878136;LHX3,4:0.152660640238;TEF:0.152130238323;ELF1,2,4:0.147887769014;ZBTB6:0.141820054109;SOX{8,9,10}:0.119922324278;IKZF1:0.107448244173;MAZ:0.0975674906002;MYB:0.0700671773461;PAX1,9:0.0678701911404;ZFP161:0.0603007936365;RFX1:0.0520842885762;CREB1:0.0493222373393;TOPORS:0.0454244773849;PPARG:0.0436069948035;HOXA9_MEIS1:0.0426781225014;OCT4_SOX2{dimer}:0.00397816545412;EP300:-0.00675773063411;TFCP2:-0.00757721423303;FOX{D1,D2}:-0.0188527005761;CUX2:-0.0313860640063;NKX2-3_NKX2-5:-0.0456132429619;ZIC1..3:-0.0486808038038;CDX1,2,4:-0.0583992690315;TFAP2B:-0.0586643600209;CRX:-0.0604389023754;FOXO1,3,4:-0.0661729669086;FOX{I1,J2}:-0.0752199445284;TLX1..3_NFIC{dimer}:-0.0772886273316;AIRE:-0.0870954706459;RORA:-0.101691669513;NR5A1,2:-0.1025502033;MTF1:-0.122667935042;NKX3-1:-0.128891717386;HIC1:-0.131923960423;HNF1A:-0.154768114113;PAX3,7:-0.16062439002;NR1H4:-0.161666217889;RXR{A,B,G}:-0.162937195456;GFI1B:-0.164914154535;NANOG:-0.176142306309;ZNF384:-0.180443588282;ATF4:-0.183442366818;PDX1:-0.184504081399;HNF4A_NR2F1,2:-0.188925169645;NFIX:-0.205757071844;HLF:-0.213174307787;ESR1:-0.234414414201;T:-0.269498630903;LEF1_TCF7_TCF7L1,2:-0.280982737386;PBX1:-0.283415229054;GTF2A1,2:-0.29010512276;STAT5{A,B}:-0.295302891505;NKX6-1,2:-0.297783036541;MYBL2:-0.300355321382;GTF2I:-0.303694326092;SRF:-0.314680813815;ATF5_CREB3:-0.322819020081;NR6A1:-0.323792085399;FOXP3:-0.339285110326;EN1,2:-0.346923394534;GATA6:-0.349210097888;NFIL3:-0.353165428615;FOXA2:-0.36392220244;IRF1,2:-0.369070131105;MED-1{core}:-0.405490314454;NFKB1_REL_RELA:-0.415801298714;PAX5:-0.419025593223;MTE{core}:-0.425925216637;MAFB:-0.426374214689;POU5F1:-0.427871599313;RUNX1..3:-0.433454821308;SPIB:-0.439919745935;PAX8:-0.448665665038;ETS1,2:-0.461838554542;UFEwm:-0.462259204763;RREB1:-0.463731038632;ZNF423:-0.468024495556;EGR1..3:-0.472171638571;PRRX1,2:-0.515904047489;ZBTB16:-0.534619723129;MEF2{A,B,C,D}:-0.541782892993;ZNF238:-0.544212458171;AHR_ARNT_ARNT2:-0.56378469353;PAX6:-0.570206483833;PATZ1:-0.586599175708;AR:-0.590466337295;REST:-0.602249636569;SPZ1:-0.612360847959;HMGA1,2:-0.620865304183;HBP1_HMGB_SSRP1_UBTF:-0.622109757921;DMAP1_NCOR{1,2}_SMARC:-0.627198796757;ATF6:-0.627525555749;ATF2:-0.630434526596;NR3C1:-0.630929966254;MYFfamily:-0.648230156013;SPI1:-0.651940615099;GLI1..3:-0.6686692622;TGIF1:-0.6750938282;KLF4:-0.680846928454;HOX{A5,B5}:-0.69753263277;FOXD3:-0.697537247971;PRDM1:-0.709198099385;EVI1:-0.713147760301;TBP:-0.740819076686;GZF1:-0.742294873053;ALX1:-0.765792875503;SOX5:-0.766400057916;TAL1_TCF{3,4,12}:-0.780238074758;BPTF:-0.804538139284;POU6F1:-0.840776002343;SMAD1..7,9:-0.880003358185;XBP1:-0.886190340033;IKZF2:-0.890305506816;FOXL1:-0.911859380294;GCM1,2:-0.923973956202;RXRA_VDR{dimer}:-0.980243123628;POU3F1..4:-0.998110684776;TFAP4:-1.00207146485;STAT2,4,6:-1.01759809388;NFE2L1:-1.02215725918;NHLH1,2:-1.06168933796;ESRRA:-1.1062871624;MZF1:-1.11507278567;JUN:-1.12120730534;NANOG{mouse}:-1.18538629015;DBP:-1.21762425597;TLX2:-1.23849089956;HES1:-1.2689979811;ALX4:-1.33238109367;STAT1,3:-1.42650123533;GATA4:-1.43269509264;NFATC1..3:-1.55551716498;HMX1:-1.81991121532
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10434-106E2;search_select_hide=table117:FF:10434-106E2
 }}

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FF:10434-106E2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0