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{{f5samples
{{f5samples
|id=FF:10282-104F3
|DRA_sample_Accession=CAGE@SAMD00004804
|name=skeletal muscle - soleus muscle, donor1
|accession_numbers=CAGE;DRX008719;DRR009591;DRZ001016;DRZ002401;DRZ012366;DRZ013751
|sample_id=10282
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001134,UBERON:0001389,UBERON:0000479,UBERON:0000062,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0008784,UBERON:0001062,UBERON:0000480,UBERON:0006058,UBERON:0002036,UBERON:0002385,UBERON:0003663,UBERON:0004256,UBERON:0005090,UBERON:0001630,UBERON:0004708,UBERON:0002101,UBERON:0004709,UBERON:0002529,UBERON:0010538,UBERON:0003661,UBERON:0010890,UBERON:0002471,UBERON:0010317,UBERON:0001383,UBERON:0001015,UBERON:0010758,UBERON:0010707,UBERON:0002204,UBERON:0000978,UBERON:0002103,UBERON:0000383,UBERON:0001665,UBERON:0003823,UBERON:0000154,UBERON:0010709
|rna_tube_id=104F3
|rna_box=104
|rna_position=F3
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=1-Sm2
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skeletal muscle - soleus muscle
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=
|sample_ethnicity=
|rna_rin=7.9
|rna_od260/230=1.79
|rna_od260/280=2.13
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Alessandro Bonetti
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=18.53442
|rna_concentration=0.68646
|sample_note=
|profile_hcage=CNhs13454,LSID1024,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000026,UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000154,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000978,UBERON:0001015,UBERON:0001048,UBERON:0001062,UBERON:0001134,UBERON:0001383,UBERON:0001389,UBERON:0001630,UBERON:0001665,UBERON:0002036,UBERON:0002050,UBERON:0002101,UBERON:0002103,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002471,UBERON:0002529,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003102,UBERON:0003104,UBERON:0003661,UBERON:0003663,UBERON:0003823,UBERON:0004120,UBERON:0004256,UBERON:0004290,UBERON:0004347,UBERON:0004357,UBERON:0004708,UBERON:0004709,UBERON:0005090,UBERON:0005291,UBERON:0005423,UBERON:0005732,UBERON:0005733,UBERON:0006057,UBERON:0006058,UBERON:0007023,UBERON:0008784,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011173
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:80797886..80797906,-!p1@ZNF750!2.42!262.86!ZNF750;;chr12:52437488..52437507,+!p2@NR4A1!2.33!214.95!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!2.24!298.46!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!2.22!231.13!ZBTB16;;chr1:151804244..151804310,-!p1@RORC!2.11!128.19!RORC;;chr3:189349162..189349207,+!p2@TP63!2.04!108.12!TP63;;chr12:10870927..10870966,-!p5@CSDA!1.91!80.93!CSDA;;chr3:189348969..189349018,+!p4@TP63!1.84!67.98!TP63;;chr19:46801639..46801699,+!p1@HIF3A!1.83!67.33!HIF3A;;chr11:113930401..113930422,+!p3@ZBTB16!1.80!62.80!ZBTB16;;chr7:73038839..73038862,-!p1@MLXIPL!1.78!59.56!MLXIPL;;chr7:150945754..150945789,-!p2@SMARCD3!1.75!163.80!SMARCD3;;chr12:81101404..81101421,+!p1@MYF6!1.71!49.85!MYF6;;chr1:119530493..119530572,-!p1@TBX15!1.65!44.03!TBX15;;chr1:203055129..203055147,-!p1@MYOG!1.64!42.73!MYOG;;chr13:41240717..41240735,-!p2@FOXO1!1.60!253.79!FOXO1;;chr8:106330656..106330684,+!p1@ZFPM2!1.60!98.41!ZFPM2;;chr1:170633348..170633399,+!p2@PRRX1!1.57!49.20!PRRX1;;chr17:80797863..80797874,-!p2@ZNF750!1.56!34.96!ZNF750;;chr12:26277956..26277980,-!p1@BHLHE41!1.55!118.48!BHLHE41;;chr6:108977520..108977534,+!p7@FOXO3!1.55!34.31!FOXO3;;chr10:63809013..63809041,+!p3@ARID5B!1.54!181.93!ARID5B;;chr15:31658288..31658338,+!p4@KLF13!1.52!32.37!KLF13;;chr16:67198633..67198671,+!p1@HSF4!1.52!32.37!HSF4;;chr3:69788576..69788648,+!p1@MITF!1.51!161.21!MITF;;chr3:141150883..141150961,+!p6@ZBTB38!1.49!29.78!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!1.48!376.16!ARID5B;;chr3:169381420..169381535,-!p1@MECOM!1.48!33.67!MECOM;;chr12:10875831..10876025,-!p1@CSDA!1.47!2247.23!CSDA;;chr12:10875658..10875708,-!p2@CSDA!1.47!64.10!CSDA;;chr10:63809077..63809089,+!p5@ARID5B!1.47!60.86!ARID5B;;chr12:26277817..26277863,-!p2@BHLHE41!1.47!38.20!BHLHE41;;chrX:106960285..106960299,-!p1@TSC22D3!1.46!712.17!TSC22D3;;chr12:81101472..81101483,+!p2@MYF6!1.45!27.19!MYF6;;chr17:46126136..46126152,+!p1@NFE2L1!1.44!1286.44!NFE2L1;;chr14:61116183..61116208,-!p1@SIX1!1.44!97.76!SIX1;;chr17:38256799..38256815,-!p3@NR1D1!1.43!45.97!NR1D1;;chr12:10854595..10854628,-!p7@CSDA!1.43!36.26!CSDA;;chr11:113930355..113930366,+!p5@ZBTB16!1.43!25.90!ZBTB16;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.90!PKNOX2;;chr11:113930291..113930339,+!p2@ZBTB16!1.41!40.14!ZBTB16;;chr20:62680984..62680999,-!p1@SOX18!1.41!32.37!SOX18;;chr1:170633058..170633084,+!p5@PRRX1!1.40!23.95!PRRX1;;chr6:126070769..126070801,+!p1@HEY2!1.39!27.19!HEY2;;chr11:113930477..113930488,+!p4@ZBTB16!1.39!23.31!ZBTB16;;chr1:40105299..40105326,-!p1@HEYL!1.39!23.31!HEYL;;chr13:41240737..41240787,-!p1@FOXO1!1.38!264.80!FOXO1;;chr4:87928413..87928433,+!p3@AFF1!1.38!139.84!AFF1;;chr9:102584159..102584174,+!p2@NR4A3!1.38!40.79!NR4A3;;chr12:10875768..10875808,-!p3@CSDA!1.34!31.72!CSDA;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.95!PRRX1;;chr12:10870989..10871013,-!p11@CSDA!1.34!20.72!CSDA;;chr14:73360799..73360817,-!p1@DPF3!1.33!68.63!DPF3;;chr7:113726357..113726443,+!p1@FOXP2!1.33!34.96!FOXP2;;chr3:126076242..126076257,-!p1@KLF15!1.33!25.25!KLF15;;chr7:15726243..15726293,-!p2@MEOX2!1.32!20.07!MEOX2;;chr7:150946015..150946070,-!p3@SMARCD3!1.31!41.44!SMARCD3;;chr1:170632959..170632987,+!p4@PRRX1!1.31!21.37!PRRX1;;chr13:45151259..45151326,-!p2@TSC22D1!1.28!105.53!TSC22D1;;chr1:61548225..61548299,+!p1@NFIA!1.27!224.66!NFIA;;chr17:38256822..38256851,-!p1@NR1D1!1.26!130.78!NR1D1;;chrX:106960180..106960197,-!p2@TSC22D3!1.25!62.80!TSC22D3;;chr12:10875612..10875631,-!p9@CSDA!1.25!20.07!CSDA;;chr12:52445218..52445237,+!p1@NR4A1!1.24!200.70!NR4A1;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.19!HOXC10;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.19!KDM5D;;chr16:67198683..67198698,+!p2@HSF4!1.24!16.19!HSF4;;chr19:33793430..33793447,-!p1@CEBPA!1.23!67.33!CEBPA;;chr11:16627528..16627550,-!p7@SOX6!1.22!15.54!SOX6;;chr1:119530636..119530653,-!p2@TBX15!1.22!15.54!TBX15;;chr3:114343768..114343822,-!p1@ZBTB20!1.21!66.04!ZBTB20;;chr15:42743341..42743377,-!p3@ZFP106!1.21!25.25!ZFP106;;chr12:3069037..3069119,+!p2@TEAD4!1.20!51.15!TEAD4;;chr21:39870339..39870443,-!p1@ERG!1.20!14.89!ERG;;chr7:27169801..27169844,-!p2@HOXA4!1.20!14.89!HOXA4;;chr17:4981745..4981810,+!p1@ZFP3!1.18!67.98!ZFP3;;chr10:63809134..63809145,+!p6@ARID5B!1.17!31.72!ARID5B;;chr7:150945865..150945896,-!p4@SMARCD3!1.16!13.60!SMARCD3;;chr4:87856191..87856208,+!p2@AFF1!1.15!103.59!AFF1;;chr5:158526917..158526932,-!p1@EBF1!1.15!32.37!EBF1;;chr12:10865870..10865888,-!p6@CSDA!1.14!17.48!CSDA;;chr12:3068957..3068978,+!p6@TEAD4!1.14!14.24!TEAD4;;chr12:3068979..3068993,+!p11@TEAD4!1.14!12.95!TEAD4;;chr12:54393880..54393962,+!p1@HOXC9!1.14!12.95!HOXC9;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.95!EBF2;;chr8:55370487..55370503,+!p1@SOX17!1.14!12.95!SOX17;;chr4:111543899..111543923,-!p6@PITX2!1.14!12.95!PITX2;;chr1:10856639..10856662,-!p2@CASZ1!1.12!12.30!CASZ1;;chr3:141087393..141087426,+!p3@ZBTB38!1.11!47.26!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!1.11!31.72!HIC1;;chr3:141151009..141151033,+!p10@ZBTB38!1.10!11.65!ZBTB38;;chr11:16629261..16629284,-!p1@SOX6!1.10!11.65!SOX6;;chr21:38071430..38071456,+!p1@SIM2!1.10!11.65!SIM2;;chr5:71803177..71803255,-!p1@ZNF366!1.08!11.01!ZNF366;;chr15:60884706..60884743,-!p1@RORA!1.07!55.68!RORA;;chr1:170632285..170632309,+!p1@PRRX1!1.07!12.30!PRRX1;;chr1:10856694..10856715,-!p3@CASZ1!1.06!10.36!CASZ1;;chr18:53089453..53089482,-!p11@TCF4!1.06!10.36!TCF4;;chr11:16627614..16627651,-!p4@SOX6!1.06!10.36!SOX6;;chr12:54394309..54394336,+!p2@HOXC9!1.06!10.36!HOXC9;;chr1:8483756..8483809,-!p5@RERE!1.05!29.13!RERE;;chr5:88178983..88179012,-!p1@MEF2C!1.04!77.69!MEF2C;;chr2:24714729..24714761,+!p1@NCOA1!1.03!9.71!NCOA1;;chr11:12766597..12766618,+!p11@TEAD1!1.03!9.71!TEAD1;;chr16:30389131..30389144,+!p16@ZNF48!1.03!9.71!ZNF48;;chr2:238536207..238536290,+!p2@LRRFIP1!1.02!94.52!LRRFIP1;;chr1:8483723..8483752,-!p12@RERE!1.02!14.89!RERE;;chrX:107019163..107019179,-!p7@TSC22D3!1.02!11.01!TSC22D3;;chr10:63808979..63808990,+!p8@ARID5B!1.02!10.36!ARID5B;;chr10:63809090..63809097,+!p7@ARID5B!1.01!12.95!ARID5B;;chrX:107018969..107019024,-!p6@TSC22D3!1.01!12.95!TSC22D3;;chr13:72441074..72441172,-!p2@DACH1!1.00!9.06!DACH1;;chr3:18466787..18466839,-!p1@SATB1!0.98!38.85!SATB1;;chr16:79633894..79633954,-!p3@MAF!0.97!16.19!MAF;;chr8:80679993..80680011,-!p1@HEY1!0.97!12.30!HEY1;;chr8:10588010..10588030,-!p1@SOX7!0.97!8.42!SOX7;;chr12:10856713..10856723,-!p23@CSDA!0.97!8.42!CSDA;;chr13:45150455..45150472,-!p8@TSC22D1!0.97!8.42!TSC22D1;;chr2:242556880..242556899,-!p5@THAP4!0.97!8.42!THAP4;;chr1:170632723..170632739,+!p8@PRRX1!0.97!8.42!PRRX1;;chr12:26277929..26277955,-!p3@BHLHE41!0.96!11.65!BHLHE41;;chr2:85980919..85980942,+!p4@ATOH8!0.95!8.42!ATOH8;;chr15:42783305..42783348,-!p1@ZFP106!0.94!126.25!ZFP106;;chr3:24536253..24536328,-!p1@THRB!0.94!14.89!THRB;;chr18:42260059..42260132,+!p1@SETBP1!0.94!12.95!SETBP1;;chr2:85981073..85981091,+!p5@ATOH8!0.94!7.77!ATOH8;;chr2:85981107..85981120,+!p3@ATOH8!0.94!7.77!ATOH8;;chr8:106330515..106330525,+!p6@ZFPM2!0.94!7.77!ZFPM2;;chrY:21906761..21906810,-!p2@KDM5D!0.94!7.77!KDM5D;;chr1:14075903..14075940,+!p1@PRDM2!0.93!168.33!PRDM2;;chr1:61548374..61548415,+!p4@NFIA!0.93!14.24!NFIA;;chr9:102584241..102584261,+!p4@NR4A3!0.92!11.65!NR4A3;;chr9:73028814..73028895,-!p1@KLF9!0.91!73.81!KLF9;;chr7:63505799..63505904,+!p1@ZNF727!0.91!7.12!ZNF727;;chr22:21771656..21771662,+!p1@HIC2!0.91!7.12!HIC2;;chr1:10856665..10856683,-!p4@CASZ1!0.91!7.12!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!0.91!7.12!RXRG;;chr3:187463179..187463201,-!p2@BCL6!0.90!29.78!BCL6;;chr1:8483878..8483907,-!p4@RERE!0.90!27.84!RERE;;chr9:102584262..102584276,+!p1@NR4A3!0.90!16.19!NR4A3;;chr4:146859927..146860055,-!p1@ZNF827!0.89!43.38!ZNF827;;chr12:124873852..124873881,-!p3@NCOR2!0.89!42.73!NCOR2;;chr9:73029219..73029289,-!p2@KLF9!0.89!21.37!KLF9;;chr20:39317868..39317884,-!p1@MAFB!0.88!82.87!MAFB;;chr3:71632864..71632885,-!p4@FOXP1!0.88!23.31!FOXP1;;chr1:164528340..164528379,+!p4@PBX1!0.88!16.83!PBX1;;chr1:164528588..164528610,+!p8@PBX1!0.88!10.36!PBX1;;chr8:48650715..48650735,-!p1@CEBPD!0.87!863.67!CEBPD;;chr2:85981222..85981259,+!p2@ATOH8!0.87!11.01!ATOH8;;chr3:126076264..126076305,-!p2@KLF15!0.87!9.06!KLF15;;chr2:122042770..122042785,-!p1@TFCP2L1!0.87!6.47!TFCP2L1;;chrX:25034067..25034088,-!p1@ARX!0.87!6.47!ARX;;chr11:125034605..125034636,+!p2@PKNOX2!0.87!6.47!PKNOX2;;chr12:10871049..10871064,-!p19@CSDA!0.87!6.47!CSDA;;chr18:53089538..53089578,-!p14@TCF4!0.87!6.47!TCF4;;chr7:27224842..27224872,-!p1@HOXA11!0.87!6.47!HOXA11;;chr7:73038867..73038878,-!p2@MLXIPL!0.87!6.47!MLXIPL;;chr1:165414325..165414369,-!p1@RXRG!0.87!6.47!RXRG;;chr2:28615716..28615733,+!p1@FOSL2!0.86!312.06!FOSL2;;chrX:106960221..106960236,-!p3@TSC22D3!0.86!18.13!TSC22D3;;chr6:157099159..157099185,+!p6@ARID1B!0.86!11.01!ARID1B;;chr1:214161272..214161322,+!p1@PROX1!0.86!9.06!PROX1;;chr17:38256877..38256900,-!p2@NR1D1!0.85!20.72!NR1D1;;chr9:102584128..102584144,+!p3@NR4A3!0.84!11.65!NR4A3;;chr1:26496459..26496470,+!p2@ZNF593!0.84!11.65!ZNF593;;chr16:73082004..73082033,-!p5@ZFHX3!0.84!9.71!ZFHX3;;chrX:106960249..106960260,-!p5@TSC22D3!0.84!9.71!TSC22D3;;chr8:106330696..106330719,+!p2@ZFPM2!0.84!7.77!ZFPM2;;chr12:124873357..124873401,-!p1@NCOR2!0.83!71.22!NCOR2;;chr19:58281014..58281074,+!p1@ZNF586!0.83!50.50!ZNF586;;chr6:7107999..7108031,+!p2@RREB1!0.83!32.37!RREB1;;chr4:146859887..146859921,-!p3@ZNF827!0.83!8.42!ZNF827;;chr3:114819101..114819121,-!p7@ZBTB20!0.83!5.83!ZBTB20;;chr7:15726296..15726315,-!p1@MEOX2!0.83!5.83!MEOX2;;chr8:144512897..144512903,-!p1@MAFA!0.83!5.83!MAFA;;chr12:10856697..10856712,-!p12@CSDA!0.83!5.83!CSDA;;chr12:10865922..10865934,-!p15@CSDA!0.83!5.83!CSDA;;chr12:10875548..10875563,-!p13@CSDA!0.83!5.83!CSDA;;chr12:10875733..10875752,-!p8@CSDA!0.83!5.83!CSDA;;chr12:54379029..54379057,+!p2@HOXC10!0.83!5.83!HOXC10;;chr1:8484872..8484891,-!p47@RERE!0.83!5.83!RERE;;chr9:73028786..73028797,-!p11@KLF9!0.83!5.83!KLF9;;chr21:40177845..40177863,+!p1@ETS2!0.82!360.62!ETS2;;chr10:31608127..31608156,+!p1@ZEB1!0.82!112.01!ZEB1;;chr13:72441315..7244145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;;chr1:211433151..211433191,+!p5@RCOR3!0.32!3.24!RCOR3;;chr17:7492684..7492778,-!p2@SOX15!0.32!3.24!SOX15;;chr14:64970427..64970450,-!p5@ZBTB25!0.32!2.59!ZBTB25;;chr1:43148625..43148710,+!p3@YBX1!0.32!2.59!YBX1;;chr9:14313893..14313908,-!p7@NFIB!0.32!1.94!NFIB;;chr3:71632894..71632909,-!p17@FOXP1!0.32!1.94!FOXP1;;chr6:31515311..31515330,+!p3@NFKBIL1!0.32!1.94!NFKBIL1;;chr7:77428248..77428259,+!p5@PHTF2!0.32!1.29!PHTF2;;chr19:52772811..52772817,+!p3@ZNF766!0.32!1.29!ZNF766;;chr1:78445097..78445110,-!p7@FUBP1!0.32!1.29!FUBP1;;chr2:27357479..27357524,-!p1@PREB!0.31!51.79!PREB;;chr8:145159415..145159438,+!p2@MAF1!0.31!36.26!MAF1;;chr17:40428359..40428462,-!p1@STAT5B!0.31!23.31!STAT5B;;chr7:129251531..129251601,+!p1@NRF1!0.31!20.07!NRF1;;chr14:64970494..64970578,-!p1@ZBTB25!0.31!18.13!ZBTB25;;chr1:27022164..27022220,+!p2@ARID1A!0.31!12.95!ARID1A;;chr20:25677465..25677497,-!p1@ZNF337!0.31!11.01!ZNF337;;chr19:52511437..52511490,-!p1@ZNF615!0.31!10.36!ZNF615;;chr2:28616358..28616380,+!p3@FOSL2!0.31!9.06!FOSL2;;chr19:58459047..58459083,-!p1@ZNF256!0.31!8.42!ZNF256;;chr19:2900917..2900981,+!p1@ZNF57!0.31!6.47!ZNF57;;chr14:89883412..89883478,-!p3@FOXN3!0.31!5.18!FOXN3;;chr16:68118689..68118733,+!p3@NFATC3!0.31!3.88!NFATC3;;chr1:211432823..211432851,+!p3@RCOR3!0.31!3.88!RCOR3;;chr19:24269949..24269969,+!p3@ZNF254!0.31!3.24!ZNF254;;chr2:37458749..37458766,-!p2@CEBPZ!0.31!3.24!CEBPZ;;chr8:182368..182402,+!p2@ZNF596!0.31!2.59!ZNF596;;chr19:12444458..12444486,-!p2@ZNF563!0.31!1.94!ZNF563;;chr19:3366625..3366629,+!p4@NFIC!0.31!1.94!NFIC;;chr9:88969226..88969237,-!p4@ZCCHC6!0.31!1.94!ZCCHC6;;chr12:19592847..19592882,+!p8@AEBP2!0.31!1.94!AEBP2;;chr12:49445984..49446002,-!p3@MLL2!0.31!1.94!MLL2;;chr11:47279248..47279264,+!p3@NR1H3!0.31!1.29!NR1H3;;chr19:12175596..12175605,+!p4@ZNF844!0.31!1.29!ZNF844;;chr19:21579964..21579975,+!p2@ZNF493!0.31!1.29!ZNF493;;chr5:124080203..124080258,-!p5@ZNF608!0.31!1.29!ZNF608;;chr3:14989138..14989151,+!p6@NR2C2!0.31!1.29!NR2C2;;chr8:145159376..145159407,+!p1@MAF1!0.30!75.10!MAF1;;chr11:10879593..10879620,-!p1@ZBED5!0.30!55.68!ZBED5;;chr16:31085714..31085783,+!p1@ZNF646!0.30!29.13!ZNF646;;chr6:126112074..126112144,+!p1@NCOA7!0.30!23.95!NCOA7;;chr16:89284104..89284150,+!p1@ZNF778!0.30!12.30!ZNF778;;chr22:24093267..24093327,-!p1@ZNF70!0.30!11.65!ZNF70;;chr19:21579908..21579949,+!p1@ZNF493!0.30!10.36!ZNF493;;chrX:101186981..101187030,-!p1@ZMAT1!0.30!5.18!ZMAT1;;chr2:148778973..148779035,+!p3@MBD5!0.30!3.88!MBD5;;chr19:57106624..57106644,+!p2@ZNF71!0.30!3.24!ZNF71;;chr20:48807171..48807234,+!p4@CEBPB!0.30!3.24!CEBPB;;chr15:96874063..96874074,+!p10@NR2F2!0.30!2.59!NR2F2;;chr3:141121847..141121868,+!p5@ZBTB38!0.30!1.94!ZBTB38;;chr4:87928105..87928126,+!p13@AFF1!0.30!1.94!AFF1;;chr12:51566592..51566617,-!p3@TFCP2!0.30!1.94!TFCP2;;chr19:57019215..57019250,+!p1@ZNF471!0.30!1.94!ZNF471;;chr19:58666502..58666519,-!p4@ZNF329!0.30!1.29!ZNF329;;chr22:41735880..41735903,+!p5@ZC3H7B!0.30!1.29!ZC3H7B;;chr17:46675420..46675465,-!p3@HOXB6!0.30!1.29!HOXB6;;chr10:31607702..31607755,+!p3@ZEB1!0.30!1.29!ZEB1;;chr10:8095593..8095625,+!p3@GATA3!0.30!1.29!GATA3;;chr12:52431016..52431071,+!p4@NR4A1!0.30!1.29!NR4A1;;chr17:16118835..16118867,-!p1@NCOR1!0.29!58.27!NCOR1;;chr19:36706024..36706049,+!p1@ZNF146!0.29!31.08!ZNF146;;chr2:219524310..219524385,-!p1@ZNF142!0.29!25.25!ZNF142;;chr19:58331088..58331106,+!p1@ZNF587!0.29!24.60!ZNF587;;chr1:40627038..40627071,+!p1@RLF!0.29!22.66!RLF;;chr12:95467359..95467417,-!p2@NR2C1!0.29!22.66!NR2C1;;chr12:56512026..56512064,+!p1@ZC3H10,p2@ESYT1!0.29!15.54!ZC3H10;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
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|rna_box=104
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|rna_concentration=0.68646
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=1-Sm2
|rna_od260/230=1.79
|rna_od260/280=2.13
|rna_position=F3
|rna_rin=7.9
|rna_sample_type=total RNA
|rna_tube_id=104F3
|rna_weight_ug=18.53442
|sample_age=
|sample_category=tissues
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Alessandro Bonetti
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.95148364359152e-234!GO:0005737;cytoplasm;1.36696230645003e-190!GO:0043226;organelle;8.06738059550971e-180!GO:0043229;intracellular organelle;1.80532323638451e-179!GO:0043231;intracellular membrane-bound organelle;2.84512052773126e-162!GO:0043227;membrane-bound organelle;2.90268226157549e-162!GO:0044444;cytoplasmic part;3.70596743136966e-139!GO:0044422;organelle part;4.370248645168e-107!GO:0044446;intracellular organelle part;1.68682286718556e-106!GO:0032991;macromolecular complex;9.1330386241139e-96!GO:0005739;mitochondrion;1.00481277436075e-94!GO:0030529;ribonucleoprotein complex;3.80163473396857e-80!GO:0044237;cellular metabolic process;1.86532769023345e-78!GO:0044238;primary metabolic process;2.74172991246133e-76!GO:0005515;protein binding;1.16894877160572e-75!GO:0043233;organelle lumen;2.73299348437518e-73!GO:0031974;membrane-enclosed lumen;2.73299348437518e-73!GO:0043170;macromolecule metabolic process;3.27148761996458e-71!GO:0003723;RNA binding;9.15136778896849e-68!GO:0044429;mitochondrial part;1.2655949728167e-65!GO:0005634;nucleus;2.68055913883896e-62!GO:0044428;nuclear part;1.34107435413345e-58!GO:0005840;ribosome;4.49813544057594e-50!GO:0043234;protein complex;6.04459596405277e-49!GO:0031967;organelle envelope;7.90856882856901e-49!GO:0006412;translation;9.00434693133523e-49!GO:0031975;envelope;1.35712323833036e-48!GO:0019538;protein metabolic process;9.62905391624079e-48!GO:0006396;RNA processing;6.06449822991832e-44!GO:0010467;gene expression;7.64455902568777e-44!GO:0044260;cellular macromolecule metabolic process;1.18356093355558e-42!GO:0003735;structural constituent of ribosome;1.19960217665196e-42!GO:0005740;mitochondrial envelope;2.5500406963308e-41!GO:0044267;cellular protein metabolic process;4.79379570038492e-41!GO:0031966;mitochondrial membrane;2.11051648310653e-40!GO:0031981;nuclear lumen;2.53780582251291e-39!GO:0043283;biopolymer metabolic process;3.37007785622297e-39!GO:0019866;organelle inner membrane;4.74334538608716e-38!GO:0031090;organelle membrane;6.692910598239e-38!GO:0044249;cellular biosynthetic process;2.90317857892057e-37!GO:0016071;mRNA metabolic process;3.5761012484217e-37!GO:0005743;mitochondrial inner membrane;4.55083542421692e-37!GO:0016043;cellular component organization and biogenesis;3.39975730873716e-36!GO:0033279;ribosomal subunit;5.24684113131831e-36!GO:0008380;RNA splicing;1.15828588738199e-35!GO:0009059;macromolecule biosynthetic process;1.65515135112189e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.29891132856005e-32!GO:0009058;biosynthetic process;5.36964126742989e-32!GO:0033036;macromolecule localization;6.67333733466355e-32!GO:0006397;mRNA processing;8.35290304221043e-32!GO:0005829;cytosol;1.55537715271644e-31!GO:0015031;protein transport;8.96011182799794e-31!GO:0031980;mitochondrial lumen;4.7112793857969e-30!GO:0005759;mitochondrial matrix;4.7112793857969e-30!GO:0043228;non-membrane-bound organelle;3.64997188615413e-29!GO:0043232;intracellular non-membrane-bound organelle;3.64997188615413e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.39888915775012e-29!GO:0008104;protein localization;1.39835169170539e-28!GO:0045184;establishment of protein localization;1.83514035497999e-28!GO:0044455;mitochondrial membrane part;1.55830261119413e-26!GO:0046907;intracellular transport;3.64831753825612e-26!GO:0065003;macromolecular complex assembly;2.70558877239312e-25!GO:0022607;cellular component assembly;9.90050831398139e-25!GO:0005654;nucleoplasm;2.2096998939479e-24!GO:0006512;ubiquitin cycle;3.39674557293018e-24!GO:0006119;oxidative phosphorylation;3.53684157701968e-24!GO:0005681;spliceosome;6.84472659853854e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.60158340228948e-23!GO:0006886;intracellular protein transport;4.9024694463138e-23!GO:0044451;nucleoplasm part;1.02503169166918e-22!GO:0005746;mitochondrial respiratory chain;4.71619846320046e-22!GO:0022618;protein-RNA complex assembly;6.40857931482998e-22!GO:0000166;nucleotide binding;1.827530986452e-21!GO:0003676;nucleic acid binding;2.84783588751706e-21!GO:0008135;translation factor activity, nucleic acid binding;1.85786303623562e-20!GO:0044445;cytosolic part;2.00687118512052e-20!GO:0006996;organelle organization and biogenesis;2.51878016231579e-20!GO:0016070;RNA metabolic process;5.55392561506299e-20!GO:0015935;small ribosomal subunit;8.10220762259541e-20!GO:0016874;ligase activity;6.4511302416634e-19!GO:0050136;NADH dehydrogenase (quinone) activity;1.8191959642631e-18!GO:0003954;NADH dehydrogenase activity;1.8191959642631e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.8191959642631e-18!GO:0008134;transcription factor binding;2.98860530578395e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.44428606661159e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.05790668536733e-18!GO:0006511;ubiquitin-dependent protein catabolic process;4.11039354094472e-18!GO:0019941;modification-dependent protein catabolic process;5.95165829125258e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.95165829125258e-18!GO:0044265;cellular macromolecule catabolic process;7.52929629655958e-18!GO:0044257;cellular protein catabolic process;1.18308929047531e-17!GO:0006457;protein folding;1.41076060624872e-17!GO:0015934;large ribosomal subunit;2.33337019657743e-17!GO:0005761;mitochondrial ribosome;4.369591356533e-17!GO:0000313;organellar ribosome;4.369591356533e-17!GO:0044248;cellular catabolic process;7.81168778725185e-17!GO:0042775;organelle ATP synthesis coupled electron transport;1.41557198431201e-16!GO:0042773;ATP synthesis coupled electron transport;1.41557198431201e-16!GO:0051186;cofactor metabolic process;1.75353964221896e-16!GO:0008092;cytoskeletal protein binding;2.47057180279039e-16!GO:0005730;nucleolus;4.25845239289717e-16!GO:0030964;NADH dehydrogenase complex (quinone);4.25845239289717e-16!GO:0045271;respiratory chain complex I;4.25845239289717e-16!GO:0005747;mitochondrial respiratory chain complex I;4.25845239289717e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.23420821722799e-16!GO:0043285;biopolymer catabolic process;5.94983189322548e-16!GO:0006413;translational initiation;1.28069224571569e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.62381003309722e-15!GO:0043687;post-translational protein modification;1.07046245765038e-14!GO:0051641;cellular localization;1.13859084733447e-14!GO:0051649;establishment of cellular localization;1.27866448017109e-14!GO:0009055;electron carrier activity;1.3244529283414e-14!GO:0043412;biopolymer modification;1.32891212949458e-14!GO:0003743;translation initiation factor activity;1.51769277936125e-14!GO:0009057;macromolecule catabolic process;1.59761203044838e-14!GO:0000502;proteasome complex (sensu Eukaryota);5.40070134302951e-14!GO:0016604;nuclear body;6.24362865512669e-14!GO:0006605;protein targeting;1.36031962969359e-13!GO:0030163;protein catabolic process;1.6132851846074e-13!GO:0006091;generation of precursor metabolites and energy;2.17435044086928e-13!GO:0017076;purine nucleotide binding;3.18965837336804e-13!GO:0006464;protein modification process;3.31435613014807e-13!GO:0051082;unfolded protein binding;3.81471164547889e-13!GO:0003712;transcription cofactor activity;4.52706854032966e-13!GO:0006446;regulation of translational initiation;6.08199325072369e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.57820971266803e-13!GO:0016607;nuclear speck;9.88615326801834e-13!GO:0017111;nucleoside-triphosphatase activity;1.02549566419149e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.16439542958488e-12!GO:0016462;pyrophosphatase activity;1.29237060431967e-12!GO:0006732;coenzyme metabolic process;2.50233398228914e-12!GO:0044449;contractile fiber part;4.92080183048381e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.55571929102439e-12!GO:0043292;contractile fiber;6.43688639713748e-12!GO:0032553;ribonucleotide binding;7.36227463617883e-12!GO:0032555;purine ribonucleotide binding;7.36227463617883e-12!GO:0030554;adenyl nucleotide binding;1.08773821520799e-11!GO:0045333;cellular respiration;1.5980560734333e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.2225424025192e-11!GO:0015629;actin cytoskeleton;3.22754939142343e-11!GO:0008565;protein transporter activity;3.74316562167956e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.78226822462965e-11!GO:0000375;RNA splicing, via transesterification reactions;3.78226822462965e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.78226822462965e-11!GO:0015980;energy derivation by oxidation of organic compounds;5.6871874160156e-11!GO:0008639;small protein conjugating enzyme activity;6.77440387567532e-11!GO:0042254;ribosome biogenesis and assembly;6.77440387567532e-11!GO:0048193;Golgi vesicle transport;1.04003245397325e-10!GO:0015078;hydrogen ion transmembrane transporter activity;1.05822279244388e-10!GO:0004842;ubiquitin-protein ligase activity;1.61501282472374e-10!GO:0030016;myofibril;1.61501282472374e-10!GO:0032559;adenyl ribonucleotide binding;1.91452164715838e-10!GO:0009056;catabolic process;1.96603400150615e-10!GO:0019787;small conjugating protein ligase activity;2.55311471231671e-10!GO:0016192;vesicle-mediated transport;2.82526874500333e-10!GO:0005524;ATP binding;2.97328963784281e-10!GO:0009060;aerobic respiration;3.2208789089383e-10!GO:0006461;protein complex assembly;7.51967555253736e-10!GO:0006913;nucleocytoplasmic transport;8.32297998156426e-10!GO:0048770;pigment granule;8.73191358450233e-10!GO:0042470;melanosome;8.73191358450233e-10!GO:0008307;structural constituent of muscle;1.09459866749524e-09!GO:0051169;nuclear transport;1.52124372907912e-09!GO:0031965;nuclear membrane;1.60834678865342e-09!GO:0006366;transcription from RNA polymerase II promoter;2.52157040312629e-09!GO:0030017;sarcomere;2.9435159191936e-09!GO:0005635;nuclear envelope;3.04811937297891e-09!GO:0003779;actin binding;3.50838902745973e-09!GO:0017038;protein import;4.69540965000166e-09!GO:0006259;DNA metabolic process;5.32696311335777e-09!GO:0016887;ATPase activity;6.49447237907256e-09!GO:0005794;Golgi apparatus;8.13321113231158e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.31756819318838e-09!GO:0005783;endoplasmic reticulum;1.172482093138e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.1867164134125e-08!GO:0051188;cofactor biosynthetic process;1.31851566979201e-08!GO:0006084;acetyl-CoA metabolic process;1.44966210101429e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24548588832648e-08!GO:0042623;ATPase activity, coupled;2.54934460692509e-08!GO:0012505;endomembrane system;2.63896003254735e-08!GO:0006163;purine nucleotide metabolic process;2.84837576820698e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.1086946813455e-08!GO:0016564;transcription repressor activity;3.98561605018846e-08!GO:0019829;cation-transporting ATPase activity;4.83936580272936e-08!GO:0006099;tricarboxylic acid cycle;5.16592982164845e-08!GO:0046356;acetyl-CoA catabolic process;5.16592982164845e-08!GO:0016881;acid-amino acid ligase activity;8.15284288624449e-08!GO:0009109;coenzyme catabolic process;9.48461456575933e-08!GO:0048523;negative regulation of cellular process;1.12418034558743e-07!GO:0050789;regulation of biological process;1.26717518779207e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.37042870060075e-07!GO:0003713;transcription coactivator activity;1.37628456008538e-07!GO:0045259;proton-transporting ATP synthase complex;1.43986660432294e-07!GO:0016529;sarcoplasmic reticulum;1.5025625590332e-07!GO:0016528;sarcoplasm;1.5025625590332e-07!GO:0050794;regulation of cellular process;1.55058885596943e-07!GO:0009150;purine ribonucleotide metabolic process;1.72856975449846e-07!GO:0044453;nuclear membrane part;1.76337893503396e-07!GO:0051187;cofactor catabolic process;1.77847563689028e-07!GO:0016491;oxidoreductase activity;1.78369695432572e-07!GO:0006793;phosphorus metabolic process;2.5354684561014e-07!GO:0006796;phosphate metabolic process;2.5354684561014e-07!GO:0007517;muscle development;2.56719588128406e-07!GO:0005643;nuclear pore;2.79001821176651e-07!GO:0006364;rRNA processing;2.9101723664966e-07!GO:0009259;ribonucleotide metabolic process;3.40673018401009e-07!GO:0015986;ATP synthesis coupled proton transport;3.58826115600938e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.58826115600938e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.48033377821412e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.48033377821412e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.48033377821412e-07!GO:0051246;regulation of protein metabolic process;4.72511661271466e-07!GO:0006164;purine nucleotide biosynthetic process;4.87602074082173e-07!GO:0005768;endosome;5.25699295206596e-07!GO:0046034;ATP metabolic process;5.58944140538903e-07!GO:0003714;transcription corepressor activity;5.62001139734461e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.94770670683522e-07!GO:0016072;rRNA metabolic process;6.87695478031679e-07!GO:0006399;tRNA metabolic process;6.99211472600592e-07!GO:0008026;ATP-dependent helicase activity;8.76560636399199e-07!GO:0009108;coenzyme biosynthetic process;8.76560636399199e-07!GO:0032446;protein modification by small protein conjugation;9.17250636330013e-07!GO:0000314;organellar small ribosomal subunit;9.73917865156241e-07!GO:0005763;mitochondrial small ribosomal subunit;9.73917865156241e-07!GO:0051427;hormone receptor binding;9.8514241535664e-07!GO:0000151;ubiquitin ligase complex;1.35253113644051e-06!GO:0006403;RNA localization;1.37042416237098e-06!GO:0050657;nucleic acid transport;1.38184437139053e-06!GO:0051236;establishment of RNA localization;1.38184437139053e-06!GO:0050658;RNA transport;1.38184437139053e-06!GO:0043038;amino acid activation;1.41428208133439e-06!GO:0006418;tRNA aminoacylation for protein translation;1.41428208133439e-06!GO:0043039;tRNA aminoacylation;1.41428208133439e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.42961259342914e-06!GO:0030029;actin filament-based process;1.59290966639931e-06!GO:0003012;muscle system process;1.64566083862237e-06!GO:0006936;muscle contraction;1.64566083862237e-06!GO:0016568;chromatin modification;1.87436483383785e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.08822219158161e-06!GO:0016567;protein ubiquitination;2.13210314206712e-06!GO:0065002;intracellular protein transport across a membrane;2.27600837712083e-06!GO:0031324;negative regulation of cellular metabolic process;2.31574494163438e-06!GO:0035257;nuclear hormone receptor binding;2.3938172673487e-06!GO:0007005;mitochondrion organization and biogenesis;2.39391582029524e-06!GO:0004386;helicase activity;2.41267824259224e-06!GO:0009892;negative regulation of metabolic process;2.49073117431606e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.80530627938412e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.01660829112677e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.01660829112677e-06!GO:0000245;spliceosome assembly;3.17303173962254e-06!GO:0051170;nuclear import;3.22012905520336e-06!GO:0006754;ATP biosynthetic process;3.5253568012186e-06!GO:0006753;nucleoside phosphate metabolic process;3.5253568012186e-06!GO:0006606;protein import into nucleus;3.56407680252172e-06!GO:0048519;negative regulation of biological process;3.98669432018959e-06!GO:0009260;ribonucleotide biosynthetic process;4.27279390169347e-06!GO:0009141;nucleoside triphosphate metabolic process;4.31010486163244e-06!GO:0005762;mitochondrial large ribosomal subunit;5.38059196129845e-06!GO:0000315;organellar large ribosomal subunit;5.38059196129845e-06!GO:0016310;phosphorylation;6.98837434590097e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.02532904296783e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.59565843339164e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.90505781000659e-06!GO:0031252;leading edge;1.31057406455079e-05!GO:0012501;programmed cell death;1.39519118569469e-05!GO:0019222;regulation of metabolic process;1.40051476137219e-05!GO:0005741;mitochondrial outer membrane;1.46219546136019e-05!GO:0016563;transcription activator activity;1.52374358346027e-05!GO:0005667;transcription factor complex;1.5325431165019e-05!GO:0044432;endoplasmic reticulum part;1.53383380091328e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.589785903422e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.589785903422e-05!GO:0019899;enzyme binding;1.62490728893894e-05!GO:0046930;pore complex;1.68788206095367e-05!GO:0016481;negative regulation of transcription;1.76082178573703e-05!GO:0006915;apoptosis;1.92347354885443e-05!GO:0043566;structure-specific DNA binding;1.94294347423219e-05!GO:0051028;mRNA transport;1.95979436561528e-05!GO:0006118;electron transport;2.14757939128657e-05!GO:0048471;perinuclear region of cytoplasm;2.15960446632882e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.24904356250221e-05!GO:0006974;response to DNA damage stimulus;2.27953305725328e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.28463611754578e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.28463611754578e-05!GO:0050662;coenzyme binding;2.61846873677114e-05!GO:0006941;striated muscle contraction;2.6859142714138e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.79429377408611e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.79746958311648e-05!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;3.74148884528028e-05!GO:0015002;heme-copper terminal oxidase activity;3.74148884528028e-05!GO:0016675;oxidoreductase activity, acting on heme group of donors;3.74148884528028e-05!GO:0004129;cytochrome-c oxidase activity;3.74148884528028e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.07000621545957e-05!GO:0031674;I band;4.2586360143022e-05!GO:0043623;cellular protein complex assembly;4.34192500362445e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.60297344065588e-05!GO:0031968;organelle outer membrane;5.27577773976286e-05!GO:0003697;single-stranded DNA binding;5.73091833433421e-05!GO:0006402;mRNA catabolic process;5.88883272809029e-05!GO:0009117;nucleotide metabolic process;5.93251239980637e-05!GO:0014706;striated muscle development;6.2449501985907e-05!GO:0003724;RNA helicase activity;6.64107463955206e-05!GO:0019867;outer membrane;6.65547966556395e-05!GO:0008219;cell death;6.94017328945859e-05!GO:0016265;death;6.94017328945859e-05!GO:0030120;vesicle coat;7.66654571230534e-05!GO:0030662;coated vesicle membrane;7.66654571230534e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.94090523439549e-05!GO:0007519;skeletal muscle development;8.3669957392206e-05!GO:0022890;inorganic cation transmembrane transporter activity;8.5975052270347e-05!GO:0051540;metal cluster binding;9.24027992305145e-05!GO:0051536;iron-sulfur cluster binding;9.24027992305145e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.27574964764333e-05!GO:0045786;negative regulation of progression through cell cycle;9.70540107851824e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000102306792827299!GO:0006323;DNA packaging;0.000111934859051981!GO:0051087;chaperone binding;0.000120197145948467!GO:0048475;coated membrane;0.000135446361942253!GO:0030117;membrane coat;0.000135446361942253!GO:0005523;tropomyosin binding;0.000136667694738028!GO:0051128;regulation of cellular component organization and biogenesis;0.000138826892550679!GO:0005770;late endosome;0.000139834349946652!GO:0003746;translation elongation factor activity;0.000149462324690743!GO:0005856;cytoskeleton;0.000151130531087972!GO:0065007;biological regulation;0.000169148002359789!GO:0035258;steroid hormone receptor binding;0.000180294578191307!GO:0016779;nucleotidyltransferase activity;0.000182577980461726!GO:0051287;NAD binding;0.000187849747933492!GO:0005798;Golgi-associated vesicle;0.000197480610761881!GO:0006635;fatty acid beta-oxidation;0.000200254965348043!GO:0005793;ER-Golgi intermediate compartment;0.000201162321897726!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000207228970510078!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000214676007592633!GO:0006414;translational elongation;0.000224500602053977!GO:0015992;proton transport;0.000241052919694215!GO:0007010;cytoskeleton organization and biogenesis;0.000260379094788402!GO:0016197;endosome transport;0.000276902291219548!GO:0019843;rRNA binding;0.000296287305021412!GO:0044440;endosomal part;0.000299504426357771!GO:0010008;endosome membrane;0.000299504426357771!GO:0030518;steroid hormone receptor signaling pathway;0.000305548565717254!GO:0031072;heat shock protein binding;0.000311388842640452!GO:0006818;hydrogen transport;0.000312354371427984!GO:0043021;ribonucleoprotein binding;0.000319443876087053!GO:0004298;threonine endopeptidase activity;0.000356050809579894!GO:0045892;negative regulation of transcription, DNA-dependent;0.00040179994103277!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000429536134633476!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000429536134633476!GO:0016044;membrane organization and biogenesis;0.000438714120023834!GO:0006752;group transfer coenzyme metabolic process;0.000448866220038891!GO:0043284;biopolymer biosynthetic process;0.000475951396868937!GO:0009719;response to endogenous stimulus;0.00049406537474362!GO:0005788;endoplasmic reticulum lumen;0.000504582492967715!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000533060732961128!GO:0015399;primary active transmembrane transporter activity;0.000533060732961128!GO:0005813;centrosome;0.000533060732961128!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055599294883902!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000576847525737407!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000576847525737407!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000576847525737407!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000593317269752712!GO:0019783;small conjugating protein-specific protease activity;0.000612058781461453!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000681456058181609!GO:0005769;early endosome;0.000685297003285981!GO:0016859;cis-trans isomerase activity;0.000686957914047363!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000729645641323252!GO:0051539;4 iron, 4 sulfur cluster binding;0.00073288182376269!GO:0003899;DNA-directed RNA polymerase activity;0.000739078204917736!GO:0004843;ubiquitin-specific protease activity;0.000801283248915058!GO:0030521;androgen receptor signaling pathway;0.000827714784844292!GO:0006839;mitochondrial transport;0.000856685936177014!GO:0005865;striated muscle thin filament;0.000981423902105368!GO:0031323;regulation of cellular metabolic process;0.000986156333894816!GO:0051789;response to protein stimulus;0.000987883429712875!GO:0006986;response to unfolded protein;0.000987883429712875!GO:0030133;transport vesicle;0.00100049518512975!GO:0006916;anti-apoptosis;0.00100198543981372!GO:0006613;cotranslational protein targeting to membrane;0.00106801928707816!GO:0006281;DNA repair;0.00114224869610853!GO:0006260;DNA replication;0.00116863312897435!GO:0042802;identical protein binding;0.00117553166375899!GO:0008186;RNA-dependent ATPase activity;0.00117553166375899!GO:0003924;GTPase activity;0.00130193483556373!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00133029702924957!GO:0008270;zinc ion binding;0.00134118336653564!GO:0043681;protein import into mitochondrion;0.0014108390625644!GO:0008361;regulation of cell size;0.00144574058487908!GO:0051168;nuclear export;0.00159543587532323!GO:0033017;sarcoplasmic reticulum membrane;0.00160005981091403!GO:0019752;carboxylic acid metabolic process;0.00160005981091403!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0016205405469866!GO:0004221;ubiquitin thiolesterase activity;0.00165461854447755!GO:0006082;organic acid metabolic process;0.00172772739381475!GO:0008286;insulin receptor signaling pathway;0.0017615013957204!GO:0006401;RNA catabolic process;0.00177789083820936!GO:0030018;Z disc;0.00181314997468737!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00181594055169225!GO:0001726;ruffle;0.00184765278388367!GO:0030132;clathrin coat of coated pit;0.00185572473877269!GO:0006350;transcription;0.00192145294533688!GO:0016853;isomerase activity;0.00192145294533688!GO:0009165;nucleotide biosynthetic process;0.00193893276635041!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00197691055914416!GO:0007265;Ras protein signal transduction;0.00207874819997987!GO:0005789;endoplasmic reticulum membrane;0.00208463501085177!GO:0043069;negative regulation of programmed cell death;0.00209308606977022!GO:0016049;cell growth;0.00216695260172225!GO:0044452;nucleolar part;0.0022275160329806!GO:0030880;RNA polymerase complex;0.0022631923786563!GO:0005815;microtubule organizing center;0.00231806984993959!GO:0016791;phosphoric monoester hydrolase activity;0.0023366617445124!GO:0019395;fatty acid oxidation;0.00245912434429037!GO:0048037;cofactor binding;0.00245912434429037!GO:0001558;regulation of cell growth;0.00246554511024113!GO:0031982;vesicle;0.0024907460406451!GO:0016272;prefoldin complex;0.00253464953844653!GO:0030522;intracellular receptor-mediated signaling pathway;0.00258808737110686!GO:0005790;smooth endoplasmic reticulum;0.00258808737110686!GO:0015631;tubulin binding;0.00258808737110686!GO:0045947;negative regulation of translational initiation;0.00261745963537356!GO:0043066;negative regulation of apoptosis;0.00262382430648739!GO:0051920;peroxiredoxin activity;0.00266130623310247!GO:0044431;Golgi apparatus part;0.00266671863084152!GO:0046914;transition metal ion binding;0.00267250083697525!GO:0031988;membrane-bound vesicle;0.00285487936033268!GO:0004674;protein serine/threonine kinase activity;0.00292567862190916!GO:0030027;lamellipodium;0.00305661396772739!GO:0004004;ATP-dependent RNA helicase activity;0.00311095304825592!GO:0010468;regulation of gene expression;0.00322099786096518!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00327014805105988!GO:0051289;protein homotetramerization;0.00338961821121802!GO:0008139;nuclear localization sequence binding;0.00342924146362415!GO:0006626;protein targeting to mitochondrion;0.00355893164782708!GO:0016023;cytoplasmic membrane-bound vesicle;0.00355893164782708!GO:0031410;cytoplasmic vesicle;0.00360287357390107!GO:0016740;transferase activity;0.00361182703023258!GO:0044262;cellular carbohydrate metabolic process;0.00370006742564566!GO:0008234;cysteine-type peptidase activity;0.00381610972698758!GO:0016790;thiolester hydrolase activity;0.00381610972698758!GO:0008180;signalosome;0.00397080311974988!GO:0043492;ATPase activity, coupled to movement of substances;0.00400390165383932!GO:0005977;glycogen metabolic process;0.00413022406186162!GO:0007006;mitochondrial membrane organization and biogenesis;0.00415325634309887!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00417071455268631!GO:0008017;microtubule binding;0.00420061181679427!GO:0051276;chromosome organization and biogenesis;0.00421806007376096!GO:0005048;signal sequence binding;0.00471379506721399!GO:0005791;rough endoplasmic reticulum;0.00483210455529615!GO:0048500;signal recognition particle;0.00496950855744498!GO:0008287;protein serine/threonine phosphatase complex;0.00498261234514347!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00498261234514347!GO:0000428;DNA-directed RNA polymerase complex;0.00498261234514347!GO:0003729;mRNA binding;0.00511332355150369!GO:0003690;double-stranded DNA binding;0.00512104198764591!GO:0046314;phosphocreatine biosynthetic process;0.00515394818225887!GO:0006603;phosphocreatine metabolic process;0.00515394818225887!GO:0016787;hydrolase activity;0.0051854117557918!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00525271259586692!GO:0050681;androgen receptor binding;0.00554205100734056!GO:0016363;nuclear matrix;0.0058043703076462!GO:0006607;NLS-bearing substrate import into nucleus;0.00589347173414982!GO:0045893;positive regulation of transcription, DNA-dependent;0.00604025638659715!GO:0048487;beta-tubulin binding;0.00607553996063564!GO:0000059;protein import into nucleus, docking;0.00615092572578403!GO:0048741;skeletal muscle fiber development;0.00624674040924869!GO:0048747;muscle fiber development;0.00624674040924869!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00639083472009741!GO:0007050;cell cycle arrest;0.00666126093546843!GO:0045454;cell redox homeostasis;0.00666308448914095!GO:0005525;GTP binding;0.00671730627908048!GO:0009081;branched chain family amino acid metabolic process;0.00697505030284423!GO:0015630;microtubule cytoskeleton;0.00700755909719838!GO:0040008;regulation of growth;0.007253525902679!GO:0003711;transcription elongation regulator activity;0.00747897063923463!GO:0042805;actinin binding;0.00773987045195985!GO:0007049;cell cycle;0.00789603348421768!GO:0008654;phospholipid biosynthetic process;0.00835590462964185!GO:0005905;coated pit;0.00852444330179472!GO:0000074;regulation of progression through cell cycle;0.00861561893397862!GO:0006979;response to oxidative stress;0.00901602460304853!GO:0042981;regulation of apoptosis;0.00914903370669965!GO:0007264;small GTPase mediated signal transduction;0.00923342297240593!GO:0051726;regulation of cell cycle;0.00956491836526309!GO:0006073;glucan metabolic process;0.00989322500718694!GO:0009083;branched chain family amino acid catabolic process;0.0106167607431001!GO:0004721;phosphoprotein phosphatase activity;0.011126235634454!GO:0043067;regulation of programmed cell death;0.0111926030892169!GO:0006351;transcription, DNA-dependent;0.0114415860793192!GO:0005869;dynactin complex;0.0115696723267542!GO:0032774;RNA biosynthetic process;0.0116533598204508!GO:0006006;glucose metabolic process;0.0116611235599293!GO:0015036;disulfide oxidoreductase activity;0.0118343666306405!GO:0006892;post-Golgi vesicle-mediated transport;0.0118343666306405!GO:0006352;transcription initiation;0.0120605266727186!GO:0006897;endocytosis;0.012440867063106!GO:0010324;membrane invagination;0.012440867063106!GO:0030867;rough endoplasmic reticulum membrane;0.0126534024660452!GO:0006733;oxidoreduction coenzyme metabolic process;0.0130052517717785!GO:0005862;muscle thin filament tropomyosin;0.0130137911504557!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0130205577900443!GO:0010257;NADH dehydrogenase complex assembly;0.0130205577900443!GO:0033108;mitochondrial respiratory chain complex assembly;0.0130205577900443!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0131707355355439!GO:0045941;positive regulation of transcription;0.0133219286998847!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0135909746678042!GO:0043488;regulation of mRNA stability;0.014030236322398!GO:0043487;regulation of RNA stability;0.014030236322398!GO:0051252;regulation of RNA metabolic process;0.014150457519596!GO:0019902;phosphatase binding;0.0143605389866822!GO:0005684;U2-dependent spliceosome;0.015043507501067!GO:0016251;general RNA polymerase II transcription factor activity;0.0151414926462286!GO:0031970;organelle envelope lumen;0.0155166559898403!GO:0006612;protein targeting to membrane;0.0156814786418869!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0157296961308277!GO:0045047;protein targeting to ER;0.0157296961308277!GO:0016405;CoA-ligase activity;0.0165094988963924!GO:0033018;sarcoplasmic reticulum lumen;0.0165743114877325!GO:0000209;protein polyubiquitination;0.0166466715742346!GO:0006354;RNA elongation;0.0167538684920489!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0178258098883293!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0178265152087206!GO:0006942;regulation of striated muscle contraction;0.0183661878847788!GO:0005758;mitochondrial intermembrane space;0.0183673415939836!GO:0008312;7S RNA binding;0.0184825968746593!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0185108294351537!GO:0006631;fatty acid metabolic process;0.0186906812875758!GO:0007266;Rho protein signal transduction;0.0187299833854049!GO:0006891;intra-Golgi vesicle-mediated transport;0.0196900264287305!GO:0031902;late endosome membrane;0.0204330454453471!GO:0003702;RNA polymerase II transcription factor activity;0.0211559339185221!GO:0050811;GABA receptor binding;0.0214185831746591!GO:0001666;response to hypoxia;0.0216878086518454!GO:0030134;ER to Golgi transport vesicle;0.0219124507621369!GO:0005773;vacuole;0.0221397141840482!GO:0030663;COPI coated vesicle membrane;0.0222190755508951!GO:0030126;COPI vesicle coat;0.0222190755508951!GO:0000287;magnesium ion binding;0.0224462832128499!GO:0000159;protein phosphatase type 2A complex;0.0225914332939426!GO:0008320;protein transmembrane transporter activity;0.0226670157932158!GO:0006383;transcription from RNA polymerase III promoter;0.0227849358660388!GO:0032561;guanyl ribonucleotide binding;0.0227849358660388!GO:0019001;guanyl nucleotide binding;0.0227849358660388!GO:0004722;protein serine/threonine phosphatase activity;0.02314884292126!GO:0017166;vinculin binding;0.0232381825985274!GO:0030658;transport vesicle membrane;0.0236094800282323!GO:0006595;polyamine metabolic process;0.0237523264460203!GO:0045445;myoblast differentiation;0.0238059678946498!GO:0006338;chromatin remodeling;0.0247801627535491!GO:0006778;porphyrin metabolic process;0.0247801627535491!GO:0033013;tetrapyrrole metabolic process;0.0247801627535491!GO:0019208;phosphatase regulator activity;0.0249409506988567!GO:0007004;telomere maintenance via telomerase;0.0249593715673009!GO:0032787;monocarboxylic acid metabolic process;0.0253783790909505!GO:0006417;regulation of translation;0.0257046402388091!GO:0006007;glucose catabolic process;0.0259745978998436!GO:0031032;actomyosin structure organization and biogenesis;0.0262387479198034!GO:0016421;CoA carboxylase activity;0.026255707399353!GO:0051262;protein tetramerization;0.0264473190670702!GO:0030118;clathrin coat;0.02654648589699!GO:0003995;acyl-CoA dehydrogenase activity;0.0266568010389151!GO:0004300;enoyl-CoA hydratase activity;0.027982603843135!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0281829440111668!GO:0016741;transferase activity, transferring one-carbon groups;0.0287572283450626!GO:0006779;porphyrin biosynthetic process;0.0289891420778838!GO:0033014;tetrapyrrole biosynthetic process;0.0289891420778838!GO:0006950;response to stress;0.0292772104664669!GO:0005885;Arp2/3 protein complex;0.0292833283323866!GO:0007030;Golgi organization and biogenesis;0.0294623028113197!GO:0045098;type III intermediate filament;0.0300464520185942!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0304953249005565!GO:0051393;alpha-actinin binding;0.0307561783187199!GO:0043414;biopolymer methylation;0.030768500819678!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0310635234541713!GO:0033043;regulation of organelle organization and biogenesis;0.0310635234541713!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0318090819641734!GO:0030911;TPR domain binding;0.0321993460481484!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0321993460481484!GO:0006376;mRNA splice site selection;0.0321993460481484!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0321993460481484!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0322044433498791!GO:0006405;RNA export from nucleus;0.0325969561479142!GO:0005777;peroxisome;0.0325969561479142!GO:0042579;microbody;0.0325969561479142!GO:0019318;hexose metabolic process;0.0330162874152889!GO:0031371;ubiquitin conjugating enzyme complex;0.0331072644891516!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0334921069827329!GO:0051370;ZASP binding;0.0340256023513942!GO:0051374;FATZ 1 binding;0.0340256023513942!GO:0008168;methyltransferase activity;0.0349881441409103!GO:0005669;transcription factor TFIID complex;0.0353198407148254!GO:0016885;ligase activity, forming carbon-carbon bonds;0.0353198407148254!GO:0019903;protein phosphatase binding;0.0358500003149256!GO:0046483;heterocycle metabolic process;0.0361460078969465!GO:0000118;histone deacetylase complex;0.0365163747054282!GO:0016311;dephosphorylation;0.0365163747054282!GO:0031326;regulation of cellular biosynthetic process;0.0367925775331705!GO:0046474;glycerophospholipid biosynthetic process;0.0376211898293375!GO:0008383;manganese superoxide dismutase activity;0.0381188611479859!GO:0001315;age-dependent response to reactive oxygen species;0.0381188611479859!GO:0019888;protein phosphatase regulator activity;0.0381188611479859!GO:0031901;early endosome membrane;0.0381586691635285!GO:0005859;muscle myosin complex;0.0388223914853767!GO:0031114;regulation of microtubule depolymerization;0.039795253043895!GO:0007026;negative regulation of microtubule depolymerization;0.039795253043895!GO:0000096;sulfur amino acid metabolic process;0.0398194678737095!GO:0009066;aspartate family amino acid metabolic process;0.0413484522541183!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0415655281548754!GO:0005083;small GTPase regulator activity;0.0420200234754664!GO:0035035;histone acetyltransferase binding;0.042204227003698!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0427296027059971!GO:0016788;hydrolase activity, acting on ester bonds;0.0427296027059971!GO:0030140;trans-Golgi network transport vesicle;0.0431420713357506!GO:0005996;monosaccharide metabolic process;0.0433902597267745!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0437249533057666!GO:0008601;protein phosphatase type 2A regulator activity;0.0437479900633939!GO:0001725;stress fiber;0.043955594898649!GO:0032432;actin filament bundle;0.043955594898649!GO:0030346;protein phosphatase 2B binding;0.0440599459907021!GO:0006096;glycolysis;0.0443012334802388!GO:0008022;protein C-terminus binding;0.0443740497779641!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0458981284704659!GO:0045449;regulation of transcription;0.0464321637840263!GO:0044438;microbody part;0.0465046437100012!GO:0044439;peroxisomal part;0.0465046437100012!GO:0031625;ubiquitin protein ligase binding;0.0465349016939403!GO:0006650;glycerophospholipid metabolic process;0.0483005173242417!GO:0014866;skeletal myofibril assembly;0.0483005173242417!GO:0030127;COPII vesicle coat;0.0487944056221224!GO:0012507;ER to Golgi transport vesicle membrane;0.0487944056221224!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0487944056221224!GO:0006743;ubiquinone metabolic process;0.0487944056221224!GO:0006744;ubiquinone biosynthetic process;0.0487944056221224!GO:0042375;quinone cofactor metabolic process;0.0487944056221224!GO:0045426;quinone cofactor biosynthetic process;0.0487944056221224!GO:0033673;negative regulation of kinase activity;0.0487944056221224!GO:0006469;negative regulation of protein kinase activity;0.0487944056221224!GO:0000303;response to superoxide;0.0493453537518334!GO:0000139;Golgi membrane;0.0495652564046503!GO:0065004;protein-DNA complex assembly;0.0497336748903495
|sample_id=10282
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skeletal muscle - soleus muscle
|top_motifs=MEF2{A,B,C,D}:6.72309461687;NR1H4:5.16554909008;PDX1:4.19504708447;POU1F1:4.12793258191;ESRRA:3.87482280414;NKX2-2,8:3.83922942473;NR5A1,2:3.49318913746;AR:3.28909184501;FOXL1:3.26998738635;NFE2L1:3.20582558815;STAT5{A,B}:3.0635169373;IKZF2:3.05829334468;NR6A1:2.88137821578;ZBTB16:2.79100457146;NFIX:2.75592437805;HOX{A4,D4}:2.69447312042;HAND1,2:2.60848391419;MYOD1:2.53472211712;TGIF1:2.51183156249;EVI1:2.47747939076;POU6F1:2.27485747187;MAFB:2.24094636828;SOX5:2.23400057223;PAX4:2.12770821377;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.11252291852;CUX2:2.11197746708;GLI1..3:2.11125077364;GATA4:2.10596065012;SPZ1:2.10123685398;RORA:2.07539693425;FOXQ1:2.06009075386;RXR{A,B,G}:1.95311005253;ALX1:1.85778544604;SMAD1..7,9:1.84946087821;UFEwm:1.81539186947;PPARG:1.7907801437;SRF:1.7848646922;FOXP3:1.77455407151;YY1:1.7079816636;CDX1,2,4:1.67280699477;BPTF:1.65053019785;NKX6-1,2:1.58504909508;NHLH1,2:1.50974670332;ZNF384:1.4676109626;PITX1..3:1.36357525735;FOXO1,3,4:1.30114807262;KLF4:1.26430601791;HOX{A6,A7,B6,B7}:1.25991435839;PAX6:1.21748070318;POU3F1..4:1.17487648574;FOX{F1,F2,J1}:1.16283858559;NR3C1:1.14946620519;ATF2:1.09412740614;HSF1,2:1.09150154065;NKX3-2:1.03911421548;MYBL2:0.957374960619;FOXM1:0.956376315959;HMGA1,2:0.95605294038;ESR1:0.955007151894;TLX2:0.901160146807;FOX{D1,D2}:0.899300506086;NKX2-1,4:0.897077811645;RREB1:0.853677265257;NFATC1..3:0.790162225322;LMO2:0.723041861729;HES1:0.709965577327;LHX3,4:0.690142231552;LEF1_TCF7_TCF7L1,2:0.683107650058;EN1,2:0.602041781923;TFAP4:0.578177591836;PBX1:0.510890517848;XBP1:0.478229037064;RFX2..5_RFXANK_RFXAP:0.469921900611;GCM1,2:0.43314167227;SNAI1..3:0.425122607491;TFAP2{A,C}:0.40542651214;ONECUT1,2:0.393641660286;TEAD1:0.314126495221;HNF4A_NR2F1,2:0.300515833206;HIC1:0.29585807631;TOPORS:0.246281070036;CEBPA,B_DDIT3:0.24503984875;MTF1:0.243466510658;GTF2A1,2:0.236363388611;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.214820016805;ZIC1..3:0.200082620533;IRF7:0.185257820075;MED-1{core}:0.17854716316;TFCP2:0.130809113227;PATZ1:0.125270663284;ZFP161:0.105717050931;GFI1B:0.10389552589;PAX1,9:0.0883186234481;REST:0.0516052122402;TBP:0.0376242477565;FOXN1:0.0126398332567;ZEB1:-0.0441065735712;NANOG:-0.0653500114884;DMAP1_NCOR{1,2}_SMARC:-0.0778254887775;TFAP2B:-0.0931551223816;PAX2:-0.106072737552;TLX1..3_NFIC{dimer}:-0.111635084049;ARID5B:-0.116126931618;RBPJ:-0.127991245557;TBX4,5:-0.133129661548;ATF4:-0.146078011328;MTE{core}:-0.155905946418;ATF5_CREB3:-0.157628434327;HMX1:-0.188132020884;TAL1_TCF{3,4,12}:-0.199655001024;SOX17:-0.214923073732;MYFfamily:-0.227819776696;ALX4:-0.269880953632;ATF6:-0.277654379577;FOSL2:-0.277677653503;IKZF1:-0.294886005085;NKX2-3_NKX2-5:-0.299441636188;GTF2I:-0.30484813725;FOXP1:-0.314668262613;bHLH_family:-0.317506315628;EP300:-0.317897871614;ZBTB6:-0.329902243069;NFE2:-0.338726135499;STAT2,4,6:-0.350904279123;AIRE:-0.356149502933;SOX{8,9,10}:-0.375279532445;TP53:-0.406008105277;PRDM1:-0.410932412135;JUN:-0.413511324971;NKX3-1:-0.41844377017;ZNF143:-0.437612192479;PAX3,7:-0.463353644861;MAZ:-0.470408450147;ZNF423:-0.480543236037;MZF1:-0.485859815122;SREBF1,2:-0.487993506781;HLF:-0.498745716946;T:-0.507415030956;ETS1,2:-0.510848047454;FOXA2:-0.530894310374;ZNF238:-0.542143145452;HOX{A5,B5}:-0.543637282231;BREu{core}:-0.570828410285;TEF:-0.575503861309;GZF1:-0.584530713019;NFKB1_REL_RELA:-0.59519560296;CRX:-0.612812309351;SPI1:-0.625107686578;NFIL3:-0.636614003586;FOS_FOS{B,L1}_JUN{B,D}:-0.653499890824;AHR_ARNT_ARNT2:-0.662772351757;HNF1A:-0.664996880375;IRF1,2:-0.66649574437;EGR1..3:-0.683086065235;NRF1:-0.713124420629;OCT4_SOX2{dimer}:-0.717385841299;RXRA_VDR{dimer}:-0.760546308585;NFE2L2:-0.79702501086;BACH2:-0.800875054919;ZNF148:-0.801343127355;NANOG{mouse}:-0.806483183487;FOXD3:-0.822641076987;CREB1:-0.888220946824;GATA6:-0.901562734492;SPIB:-0.906742966291;PAX5:-1.06533480789;E2F1..5:-1.101706289;CDC5L:-1.13651772803;ELF1,2,4:-1.15403877485;ELK1,4_GABP{A,B1}:-1.27352657711;RUNX1..3:-1.30999449854;SP1:-1.398010708;HOXA9_MEIS1:-1.44068575881;STAT1,3:-1.45499762087;RFX1:-1.46991818231;HIF1A:-1.48598344161;TFDP1:-1.52088367811;NFY{A,B,C}:-1.57539138932;EBF1:-1.61779724191;DBP:-1.62047546719;ADNP_IRX_SIX_ZHX:-1.68778481736;SOX2:-1.72327863193;MYB:-1.82686130891;GFI1:-1.89493386389;HBP1_HMGB_SSRP1_UBTF:-1.95636876485;FOX{I1,J2}:-2.08785350091;POU5F1:-2.27442089538;PRRX1,2:-2.29420665344;POU2F1..3:-2.6006646115;PAX8:-2.63572132906;XCPE1{core}:-2.85128690838;VSX1,2:-3.11944693642
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10282-104F3;search_select_hide=table117:FF:10282-104F3
}}
}}

Latest revision as of 13:57, 3 June 2020

Name:skeletal muscle - soleus muscle, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13454
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle - soleus muscle
dev stageNA
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationAlessandro Bonetti
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1-Sm2
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004804
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13454 CAGE DRX008719 DRR009591
Accession ID Hg19

Library idBAMCTSS
CNhs13454 DRZ001016 DRZ002401
Accession ID Hg38

Library idBAMCTSS
CNhs13454 DRZ012366 DRZ013751
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis1.001
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.453
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.361
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.217
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.143
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle1.462
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.555
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.698
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.65
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.555
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-1.269
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.743
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0219
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.326
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.217
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.217
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus1.043
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.834
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.627
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left1.374
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13454

Jaspar motifP-value
MA0002.20.0851
MA0003.10.9
MA0004.10.699
MA0006.10.864
MA0007.10.255
MA0009.10.607
MA0014.10.339
MA0017.10.0786
MA0018.20.0116
MA0019.10.372
MA0024.10.00214
MA0025.10.0216
MA0027.10.908
MA0028.15.65139e-4
MA0029.10.995
MA0030.10.82
MA0031.10.719
MA0035.20.387
MA0038.19.94579e-6
MA0039.20.00101
MA0040.10.848
MA0041.10.833
MA0042.10.883
MA0043.10.00142
MA0046.10.0161
MA0047.20.84
MA0048.10.0269
MA0050.11.51867e-5
MA0051.14.30918e-4
MA0052.15.78123e-17
MA0055.10.0326
MA0057.10.558
MA0058.10.565
MA0059.10.699
MA0060.11.74057e-9
MA0061.10.0663
MA0062.23.98843e-11
MA0065.20.00906
MA0066.10.263
MA0067.10.458
MA0068.10.0459
MA0069.10.169
MA0070.10.222
MA0071.10.183
MA0072.10.755
MA0073.10.939
MA0074.10.832
MA0076.12.86301e-5
MA0077.10.0343
MA0078.10.844
MA0079.20.0306
MA0080.23.3953e-8
MA0081.10.0103
MA0083.10.308
MA0084.10.947
MA0087.10.56
MA0088.10.91
MA0090.10.916
MA0091.10.0416
MA0092.10.117
MA0093.10.555
MA0099.21.47185e-7
MA0100.10.0991
MA0101.10.00844
MA0102.20.011
MA0103.10.33
MA0104.20.903
MA0105.10.256
MA0106.10.993
MA0107.10.00125
MA0108.20.05
MA0111.10.333
MA0112.21.07198e-7
MA0113.15.55031e-4
MA0114.10.0495
MA0115.10.0194
MA0116.10.0834
MA0117.10.925
MA0119.10.00692
MA0122.10.734
MA0124.10.612
MA0125.10.124
MA0131.10.211
MA0135.10.591
MA0136.11.71467e-9
MA0137.28.38516e-4
MA0138.20.782
MA0139.10.548
MA0140.10.334
MA0141.17.54283e-4
MA0142.10.355
MA0143.10.694
MA0144.10.0454
MA0145.10.0388
MA0146.10.786
MA0147.10.885
MA0148.10.454
MA0149.10.55
MA0150.10.513
MA0152.10.891
MA0153.10.925
MA0154.10.468
MA0155.10.607
MA0156.11.32898e-10
MA0157.10.551
MA0159.10.0376
MA0160.10.0158
MA0162.10.28
MA0163.10.00354
MA0164.10.278
MA0258.11.32355e-4
MA0259.10.832



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13454

Novel motifP-value
10.0131
100.198
1000.737
1010.0609
1020.758
1030.629
1040.643
1050.498
1060.123
1070.0879
1080.0978
1090.535
110.131
1100.603
1110.00694
1120.198
1130.493
1140.0214
1150.225
1160.23
1170.68
1180.413
1190.0255
120.851
1200.477
1210.5
1220.0455
1230.212
1240.296
1250.384
1260.37
1270.341
1280.0286
1290.84
130.16
1300.156
1310.386
1320.589
1330.013
1340.93
1350.362
1360.0247
1370.845
1380.593
1393.9637e-4
140.351
1400.0116
1410.176
1420.998
1430.245
1440.466
1450.869
1460.918
1470.00219
1480.0748
1490.146
150.319
1500.752
1510.0878
1520.482
1530.117
1540.562
1550.296
1560.377
1570.268
1580.322
1590.151
160.333
1600.28
1610.816
1620.892
1630.463
1640.982
1654.95676e-4
1660.741
1670.0972
1680.638
1690.0209
170.364
180.323
190.0721
20.634
200.57
210.145
220.262
230.264
240.313
250.53
260.939
270.71
280.992
290.735
30.204
300.864
310.404
320.716
330.586
340.841
350.0428
360.623
370.0923
380.502
390.223
40.766
400.357
410.603
420.871
430.338
440.00258
450.728
460.0955
470.562
480.935
490.152
50.442
500.647
510.688
520.282
530.787
540.522
550.822
560.84
570.243
580.227
590.926
60.418
600.113
610.718
620.0419
630.0773
640.705
650.19
660.0631
670.901
680.566
690.218
70.246
700.0527
710.443
720.414
730.72
740.801
750.295
760.702
770.179
780.0259
790.0164
80.105
800.137
810.43
820.111
830.562
840.192
850.00687
860.359
870.0303
880.736
890.239
90.529
900.268
910.162
920.0737
930.8
940.643
950.0585
960.095
970.541
980.0038
990.747



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13454


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001134 (skeletal muscle tissue)
0001389 (soleus muscle)
0000479 (tissue)
0000062 (organ)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0008784 (lower limb segment)
0001062 (anatomical entity)
0000480 (anatomical group)
0006058 (multi-limb segment region)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0003663 (hindlimb muscle)
0004256 (hindlimb zeugopod muscle)
0005090 (muscle structure)
0001630 (muscle organ)
0004708 (paired limb/fin)
0002101 (limb)
0004709 (pelvic appendage)
0002529 (limb segment)
0010538 (paired limb/fin segment)
0003661 (limb muscle)
0010890 (pelvic complex muscle)
0002471 (zeugopod)
0010317 (germ layer / neural crest derived structure)
0001383 (muscle of leg)
0001015 (musculature)
0010758 (subdivision of organism along appendicular axis)
0010707 (appendage girdle complex)
0002204 (musculoskeletal system)
0000978 (leg)
0002103 (hindlimb)
0000383 (musculature of body)
0001665 (triceps surae)
0003823 (hindlimb zeugopod)
0000154 (posterior region of body)
0010709 (pelvic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011173 (human skeletal muscle - soleus muscle sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

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