UBERON:0002101
From FANTOM5_SSTAR
Name: | limb | |
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Namespace: | FANTOM | |
Definition: | "A paired appendage that is evolved from a paired fin. The extent of this structure includes autopod, stylopod and zeugopod regions when present, but excludes the girdle and its parts." [UBERONREF:0000003, Wikipedia:Limb] | |
Xrefs: |
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Synonyms: |
"flipper" NARROW SENSU [] "free limb" EXACT [FMA:24875] "limb sensu vertebrata" EXACT [MAT:0000090] "tetrapod limb" EXACT [] | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0004708(paired limb/fin) |
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develops_from: | UBERON:0004347(limb bud) |
Children
is a: | UBERON:0002102 (forelimb),UBERON:0002103 (hindlimb),UBERON:0003285 (limb of embryo) |
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part of: | UBERON:0001419 (skin of limb),UBERON:0002428 (limb bone),UBERON:0002472 (stylopod),UBERON:0002529 (limb segment),UBERON:0003587 (limb connective tissue),UBERON:0003606 (limb long bone),UBERON:0003657 (limb joint),UBERON:0003661 (limb muscle),UBERON:0004381 (skeleton of limb),UBERON:0004480 (musculature of limb),UBERON:0009749 (limb mesenchyme),UBERON:0010712 (limb skeleton subdivision),UBERON:0011139 (synovial limb joint),UBERON:0015061 (limb endochondral element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
... further results Mouse (Mus musculus)
- 10232-103I7 (chicken wing buds, day03 (HH20))
- 10264-104D3
- 10267-104D6
- 10273-104E3
- 10281-104F2
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10285-104F6
- 10286-104F7 (Skin - palm, donor1)
- 10292-104G4 (achilles tendon, donor2)
- 10295-104G7 (cruciate ligament, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002101 (limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Organism subdivision that has as its parts the jointed appendages used for locomotion and manipulation.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.