FF:10282-104F3: Difference between revisions

Latest revision as of 13:57, 3 June 2020

Name:	skeletal muscle - soleus muscle, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13454
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skeletal muscle - soleus muscle
dev stage	NA
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Alessandro Bonetti
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1-Sm2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004804

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13454		CAGE		DRX008719		DRR009591

Accession ID Hg19

Library id		BAM		CTSS
CNhs13454		DRZ001016		DRZ002401

Accession ID Hg38

Library id		BAM		CTSS
CNhs13454		DRZ012366		DRZ013751

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	1.001
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.453
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.361
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.217
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.143
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	1.462
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.555
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.698
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.65
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.555
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.269
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.743
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0219
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.326
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.217
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.217
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	1.043
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.834
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.627
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	1.374
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13454

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0851
MA0003.1	MA0003.1	0.9
MA0004.1	MA0004.1	0.699
MA0006.1	MA0006.1	0.864
MA0007.1	MA0007.1	0.255
MA0009.1	MA0009.1	0.607
MA0014.1	MA0014.1	0.339
MA0017.1	MA0017.1	0.0786
MA0018.2	MA0018.2	0.0116
MA0019.1	MA0019.1	0.372
MA0024.1	MA0024.1	0.00214
MA0025.1	MA0025.1	0.0216
MA0027.1	MA0027.1	0.908
MA0028.1	MA0028.1	5.65139e-4
MA0029.1	MA0029.1	0.995
MA0030.1	MA0030.1	0.82
MA0031.1	MA0031.1	0.719
MA0035.2	MA0035.2	0.387
MA0038.1	MA0038.1	9.94579e-6
MA0039.2	MA0039.2	0.00101
MA0040.1	MA0040.1	0.848
MA0041.1	MA0041.1	0.833
MA0042.1	MA0042.1	0.883
MA0043.1	MA0043.1	0.00142
MA0046.1	MA0046.1	0.0161
MA0047.2	MA0047.2	0.84
MA0048.1	MA0048.1	0.0269
MA0050.1	MA0050.1	1.51867e-5
MA0051.1	MA0051.1	4.30918e-4
MA0052.1	MA0052.1	5.78123e-17
MA0055.1	MA0055.1	0.0326
MA0057.1	MA0057.1	0.558
MA0058.1	MA0058.1	0.565
MA0059.1	MA0059.1	0.699
MA0060.1	MA0060.1	1.74057e-9
MA0061.1	MA0061.1	0.0663
MA0062.2	MA0062.2	3.98843e-11
MA0065.2	MA0065.2	0.00906
MA0066.1	MA0066.1	0.263
MA0067.1	MA0067.1	0.458
MA0068.1	MA0068.1	0.0459
MA0069.1	MA0069.1	0.169
MA0070.1	MA0070.1	0.222
MA0071.1	MA0071.1	0.183
MA0072.1	MA0072.1	0.755
MA0073.1	MA0073.1	0.939
MA0074.1	MA0074.1	0.832
MA0076.1	MA0076.1	2.86301e-5
MA0077.1	MA0077.1	0.0343
MA0078.1	MA0078.1	0.844
MA0079.2	MA0079.2	0.0306
MA0080.2	MA0080.2	3.3953e-8
MA0081.1	MA0081.1	0.0103
MA0083.1	MA0083.1	0.308
MA0084.1	MA0084.1	0.947
MA0087.1	MA0087.1	0.56
MA0088.1	MA0088.1	0.91
MA0090.1	MA0090.1	0.916
MA0091.1	MA0091.1	0.0416
MA0092.1	MA0092.1	0.117
MA0093.1	MA0093.1	0.555
MA0099.2	MA0099.2	1.47185e-7
MA0100.1	MA0100.1	0.0991
MA0101.1	MA0101.1	0.00844
MA0102.2	MA0102.2	0.011
MA0103.1	MA0103.1	0.33
MA0104.2	MA0104.2	0.903
MA0105.1	MA0105.1	0.256
MA0106.1	MA0106.1	0.993
MA0107.1	MA0107.1	0.00125
MA0108.2	MA0108.2	0.05
MA0111.1	MA0111.1	0.333
MA0112.2	MA0112.2	1.07198e-7
MA0113.1	MA0113.1	5.55031e-4
MA0114.1	MA0114.1	0.0495
MA0115.1	MA0115.1	0.0194
MA0116.1	MA0116.1	0.0834
MA0117.1	MA0117.1	0.925
MA0119.1	MA0119.1	0.00692
MA0122.1	MA0122.1	0.734
MA0124.1	MA0124.1	0.612
MA0125.1	MA0125.1	0.124
MA0131.1	MA0131.1	0.211
MA0135.1	MA0135.1	0.591
MA0136.1	MA0136.1	1.71467e-9
MA0137.2	MA0137.2	8.38516e-4
MA0138.2	MA0138.2	0.782
MA0139.1	MA0139.1	0.548
MA0140.1	MA0140.1	0.334
MA0141.1	MA0141.1	7.54283e-4
MA0142.1	MA0142.1	0.355
MA0143.1	MA0143.1	0.694
MA0144.1	MA0144.1	0.0454
MA0145.1	MA0145.1	0.0388
MA0146.1	MA0146.1	0.786
MA0147.1	MA0147.1	0.885
MA0148.1	MA0148.1	0.454
MA0149.1	MA0149.1	0.55
MA0150.1	MA0150.1	0.513
MA0152.1	MA0152.1	0.891
MA0153.1	MA0153.1	0.925
MA0154.1	MA0154.1	0.468
MA0155.1	MA0155.1	0.607
MA0156.1	MA0156.1	1.32898e-10
MA0157.1	MA0157.1	0.551
MA0159.1	MA0159.1	0.0376
MA0160.1	MA0160.1	0.0158
MA0162.1	MA0162.1	0.28
MA0163.1	MA0163.1	0.00354
MA0164.1	MA0164.1	0.278
MA0258.1	MA0258.1	1.32355e-4
MA0259.1	MA0259.1	0.832

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13454

Novel motif	Logo	P-value
1	1	0.0131
10	10	0.198
100	100	0.737
101	101	0.0609
102	102	0.758
103	103	0.629
104	104	0.643
105	105	0.498
106	106	0.123
107	107	0.0879
108	108	0.0978
109	109	0.535
11	11	0.131
110	110	0.603
111	111	0.00694
112	112	0.198
113	113	0.493
114	114	0.0214
115	115	0.225
116	116	0.23
117	117	0.68
118	118	0.413
119	119	0.0255
12	12	0.851
120	120	0.477
121	121	0.5
122	122	0.0455
123	123	0.212
124	124	0.296
125	125	0.384
126	126	0.37
127	127	0.341
128	128	0.0286
129	129	0.84
13	13	0.16
130	130	0.156
131	131	0.386
132	132	0.589
133	133	0.013
134	134	0.93
135	135	0.362
136	136	0.0247
137	137	0.845
138	138	0.593
139	139	3.9637e-4
14	14	0.351
140	140	0.0116
141	141	0.176
142	142	0.998
143	143	0.245
144	144	0.466
145	145	0.869
146	146	0.918
147	147	0.00219
148	148	0.0748
149	149	0.146
15	15	0.319
150	150	0.752
151	151	0.0878
152	152	0.482
153	153	0.117
154	154	0.562
155	155	0.296
156	156	0.377
157	157	0.268
158	158	0.322
159	159	0.151
16	16	0.333
160	160	0.28
161	161	0.816
162	162	0.892
163	163	0.463
164	164	0.982
165	165	4.95676e-4
166	166	0.741
167	167	0.0972
168	168	0.638
169	169	0.0209
17	17	0.364
18	18	0.323
19	19	0.0721
2	2	0.634
20	20	0.57
21	21	0.145
22	22	0.262
23	23	0.264
24	24	0.313
25	25	0.53
26	26	0.939
27	27	0.71
28	28	0.992
29	29	0.735
3	3	0.204
30	30	0.864
31	31	0.404
32	32	0.716
33	33	0.586
34	34	0.841
35	35	0.0428
36	36	0.623
37	37	0.0923
38	38	0.502
39	39	0.223
4	4	0.766
40	40	0.357
41	41	0.603
42	42	0.871
43	43	0.338
44	44	0.00258
45	45	0.728
46	46	0.0955
47	47	0.562
48	48	0.935
49	49	0.152
5	5	0.442
50	50	0.647
51	51	0.688
52	52	0.282
53	53	0.787
54	54	0.522
55	55	0.822
56	56	0.84
57	57	0.243
58	58	0.227
59	59	0.926
6	6	0.418
60	60	0.113
61	61	0.718
62	62	0.0419
63	63	0.0773
64	64	0.705
65	65	0.19
66	66	0.0631
67	67	0.901
68	68	0.566
69	69	0.218
7	7	0.246
70	70	0.0527
71	71	0.443
72	72	0.414
73	73	0.72
74	74	0.801
75	75	0.295
76	76	0.702
77	77	0.179
78	78	0.0259
79	79	0.0164
8	8	0.105
80	80	0.137
81	81	0.43
82	82	0.111
83	83	0.562
84	84	0.192
85	85	0.00687
86	86	0.359
87	87	0.0303
88	88	0.736
89	89	0.239
9	9	0.529
90	90	0.268
91	91	0.162
92	92	0.0737
93	93	0.8
94	94	0.643
95	95	0.0585
96	96	0.095
97	97	0.541
98	98	0.0038
99	99	0.747

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13454

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011173 human skeletal muscle - soleus muscle sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001134 (skeletal muscle tissue)
0001389 (soleus muscle)
0000479 (tissue)
0000062 (organ)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0008784 (lower limb segment)
0001062 (anatomical entity)
0000480 (anatomical group)
0006058 (multi-limb segment region)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0003663 (hindlimb muscle)
0004256 (hindlimb zeugopod muscle)
0005090 (muscle structure)
0001630 (muscle organ)
0004708 (paired limb/fin)
0002101 (limb)
0004709 (pelvic appendage)
0002529 (limb segment)
0010538 (paired limb/fin segment)
0003661 (limb muscle)
0010890 (pelvic complex muscle)
0002471 (zeugopod)
0010317 (germ layer / neural crest derived structure)
0001383 (muscle of leg)
0001015 (musculature)
0010758 (subdivision of organism along appendicular axis)
0010707 (appendage girdle complex)
0002204 (musculoskeletal system)
0000978 (leg)
0002103 (hindlimb)
0000383 (musculature of body)
0001665 (triceps surae)
0003823 (hindlimb zeugopod)
0000154 (posterior region of body)
0010709 (pelvic complex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011173 (human skeletal muscle - soleus muscle sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004804
+|accession_numbers=CAGE;DRX008719;DRR009591;DRZ001016;DRZ002401;DRZ012366;DRZ013751
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001134,UBERON:0001389,UBERON:0000479,UBERON:0000062,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0008784,UBERON:0001062,UBERON:0000480,UBERON:0006058,UBERON:0002036,UBERON:0002385,UBERON:0003663,UBERON:0004256,UBERON:0005090,UBERON:0001630,UBERON:0004708,UBERON:0002101,UBERON:0004709,UBERON:0002529,UBERON:0010538,UBERON:0003661,UBERON:0010890,UBERON:0002471,UBERON:0010317,UBERON:0001383,UBERON:0001015,UBERON:0010758,UBERON:0010707,UBERON:0002204,UBERON:0000978,UBERON:0002103,UBERON:0000383,UBERON:0001665,UBERON:0003823,UBERON:0000154,UBERON:0010709
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:80797886..80797906,-!p1@ZNF750!2.42!262.86!ZNF750;;chr12:52437488..52437507,+!p2@NR4A1!2.33!214.95!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!2.24!298.46!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!2.22!231.13!ZBTB16;;chr1:151804244..151804310,-!p1@RORC!2.11!128.19!RORC;;chr3:189349162..189349207,+!p2@TP63!2.04!108.12!TP63;;chr12:10870927..10870966,-!p5@CSDA!1.91!80.93!CSDA;;chr3:189348969..189349018,+!p4@TP63!1.84!67.98!TP63;;chr19:46801639..46801699,+!p1@HIF3A!1.83!67.33!HIF3A;;chr11:113930401..113930422,+!p3@ZBTB16!1.80!62.80!ZBTB16;;chr7:73038839..73038862,-!p1@MLXIPL!1.78!59.56!MLXIPL;;chr7:150945754..150945789,-!p2@SMARCD3!1.75!163.80!SMARCD3;;chr12:81101404..81101421,+!p1@MYF6!1.71!49.85!MYF6;;chr1:119530493..119530572,-!p1@TBX15!1.65!44.03!TBX15;;chr1:203055129..203055147,-!p1@MYOG!1.64!42.73!MYOG;;chr13:41240717..41240735,-!p2@FOXO1!1.60!253.79!FOXO1;;chr8:106330656..106330684,+!p1@ZFPM2!1.60!98.41!ZFPM2;;chr1:170633348..170633399,+!p2@PRRX1!1.57!49.20!PRRX1;;chr17:80797863..80797874,-!p2@ZNF750!1.56!34.96!ZNF750;;chr12:26277956..26277980,-!p1@BHLHE41!1.55!118.48!BHLHE41;;chr6:108977520..108977534,+!p7@FOXO3!1.55!34.31!FOXO3;;chr10:63809013..63809041,+!p3@ARID5B!1.54!181.93!ARID5B;;chr15:31658288..31658338,+!p4@KLF13!1.52!32.37!KLF13;;chr16:67198633..67198671,+!p1@HSF4!1.52!32.37!HSF4;;chr3:69788576..69788648,+!p1@MITF!1.51!161.21!MITF;;chr3:141150883..141150961,+!p6@ZBTB38!1.49!29.78!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!1.48!376.16!ARID5B;;chr3:169381420..169381535,-!p1@MECOM!1.48!33.67!MECOM;;chr12:10875831..10876025,-!p1@CSDA!1.47!2247.23!CSDA;;chr12:10875658..10875708,-!p2@CSDA!1.47!64.10!CSDA;;chr10:63809077..63809089,+!p5@ARID5B!1.47!60.86!ARID5B;;chr12:26277817..26277863,-!p2@BHLHE41!1.47!38.20!BHLHE41;;chrX:106960285..106960299,-!p1@TSC22D3!1.46!712.17!TSC22D3;;chr12:81101472..81101483,+!p2@MYF6!1.45!27.19!MYF6;;chr17:46126136..46126152,+!p1@NFE2L1!1.44!1286.44!NFE2L1;;chr14:61116183..61116208,-!p1@SIX1!1.44!97.76!SIX1;;chr17:38256799..38256815,-!p3@NR1D1!1.43!45.97!NR1D1;;chr12:10854595..10854628,-!p7@CSDA!1.43!36.26!CSDA;;chr11:113930355..113930366,+!p5@ZBTB16!1.43!25.90!ZBTB16;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.90!PKNOX2;;chr11:113930291..113930339,+!p2@ZBTB16!1.41!40.14!ZBTB16;;chr20:62680984..62680999,-!p1@SOX18!1.41!32.37!SOX18;;chr1:170633058..170633084,+!p5@PRRX1!1.40!23.95!PRRX1;;chr6:126070769..126070801,+!p1@HEY2!1.39!27.19!HEY2;;chr11:113930477..113930488,+!p4@ZBTB16!1.39!23.31!ZBTB16;;chr1:40105299..40105326,-!p1@HEYL!1.39!23.31!HEYL;;chr13:41240737..41240787,-!p1@FOXO1!1.38!264.80!FOXO1;;chr4:87928413..87928433,+!p3@AFF1!1.38!139.84!AFF1;;chr9:102584159..102584174,+!p2@NR4A3!1.38!40.79!NR4A3;;chr12:10875768..10875808,-!p3@CSDA!1.34!31.72!CSDA;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.95!PRRX1;;chr12:10870989..10871013,-!p11@CSDA!1.34!20.72!CSDA;;chr14:73360799..73360817,-!p1@DPF3!1.33!68.63!DPF3;;chr7:113726357..113726443,+!p1@FOXP2!1.33!34.96!FOXP2;;chr3:126076242..126076257,-!p1@KLF15!1.33!25.25!KLF15;;chr7:15726243..15726293,-!p2@MEOX2!1.32!20.07!MEOX2;;chr7:150946015..150946070,-!p3@SMARCD3!1.31!41.44!SMARCD3;;chr1:170632959..170632987,+!p4@PRRX1!1.31!21.37!PRRX1;;chr13:45151259..45151326,-!p2@TSC22D1!1.28!105.53!TSC22D1;;chr1:61548225..61548299,+!p1@NFIA!1.27!224.66!NFIA;;chr17:38256822..38256851,-!p1@NR1D1!1.26!130.78!NR1D1;;chrX:106960180..106960197,-!p2@TSC22D3!1.25!62.80!TSC22D3;;chr12:10875612..10875631,-!p9@CSDA!1.25!20.07!CSDA;;chr12:52445218..52445237,+!p1@NR4A1!1.24!200.70!NR4A1;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.19!HOXC10;;chrY:21906594..21906622,-!p1@KDM5D!1.24!16.19!KDM5D;;chr16:67198683..67198698,+!p2@HSF4!1.24!16.19!HSF4;;chr19:33793430..33793447,-!p1@CEBPA!1.23!67.33!CEBPA;;chr11:16627528..16627550,-!p7@SOX6!1.22!15.54!SOX6;;chr1:119530636..119530653,-!p2@TBX15!1.22!15.54!TBX15;;chr3:114343768..114343822,-!p1@ZBTB20!1.21!66.04!ZBTB20;;chr15:42743341..42743377,-!p3@ZFP106!1.21!25.25!ZFP106;;chr12:3069037..3069119,+!p2@TEAD4!1.20!51.15!TEAD4;;chr21:39870339..39870443,-!p1@ERG!1.20!14.89!ERG;;chr7:27169801..27169844,-!p2@HOXA4!1.20!14.89!HOXA4;;chr17:4981745..4981810,+!p1@ZFP3!1.18!67.98!ZFP3;;chr10:63809134..63809145,+!p6@ARID5B!1.17!31.72!ARID5B;;chr7:150945865..150945896,-!p4@SMARCD3!1.16!13.60!SMARCD3;;chr4:87856191..87856208,+!p2@AFF1!1.15!103.59!AFF1;;chr5:158526917..158526932,-!p1@EBF1!1.15!32.37!EBF1;;chr12:10865870..10865888,-!p6@CSDA!1.14!17.48!CSDA;;chr12:3068957..3068978,+!p6@TEAD4!1.14!14.24!TEAD4;;chr12:3068979..3068993,+!p11@TEAD4!1.14!12.95!TEAD4;;chr12:54393880..54393962,+!p1@HOXC9!1.14!12.95!HOXC9;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.95!EBF2;;chr8:55370487..55370503,+!p1@SOX17!1.14!12.95!SOX17;;chr4:111543899..111543923,-!p6@PITX2!1.14!12.95!PITX2;;chr1:10856639..10856662,-!p2@CASZ1!1.12!12.30!CASZ1;;chr3:141087393..141087426,+!p3@ZBTB38!1.11!47.26!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!1.11!31.72!HIC1;;chr3:141151009..141151033,+!p10@ZBTB38!1.10!11.65!ZBTB38;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0003104,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10282-104F3
 |is_a=EFO:0002091;;FF:0011173
 |is_obsolete=
+|library_id=CNhs13454
+|library_id_phase_based=2:CNhs13454
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10282
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10282
 |name=skeletal muscle - soleus muscle, donor1
 |namespace=
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13454,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10282-104F3;search_select_hide=table117:FF:10282-104F3
 }}

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FF:10282-104F3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:57, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0