FF:10202-103F4: Difference between revisions

Latest revision as of 13:56, 3 June 2020

Name:	submaxillary gland, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12852
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	24
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234165-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005592

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12852		CAGE		DRX008733		DRR009605

Accession ID Hg19

Library id		BAM		CTSS
CNhs12852		DRZ001030		DRZ002415

Accession ID Hg38

Library id		BAM		CTSS
CNhs12852		DRZ012380		DRZ013765

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0288
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.367
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.164
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0529
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.156
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.164
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.209
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.283
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	1.014
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.079
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.903
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.164
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.505
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.264
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.164
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.164
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.164
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.536
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.164
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.164
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.164
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	1.276
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.164
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.368
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0.082
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12852

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.5
MA0003.1	MA0003.1	0.116
MA0004.1	MA0004.1	0.294
MA0006.1	MA0006.1	0.124
MA0007.1	MA0007.1	0.447
MA0009.1	MA0009.1	0.441
MA0014.1	MA0014.1	0.886
MA0017.1	MA0017.1	0.352
MA0018.2	MA0018.2	3.49115e-6
MA0019.1	MA0019.1	0.314
MA0024.1	MA0024.1	5.94766e-4
MA0025.1	MA0025.1	0.292
MA0027.1	MA0027.1	0.913
MA0028.1	MA0028.1	5.56928e-4
MA0029.1	MA0029.1	0.449
MA0030.1	MA0030.1	0.275
MA0031.1	MA0031.1	0.54
MA0035.2	MA0035.2	0.397
MA0038.1	MA0038.1	0.0385
MA0039.2	MA0039.2	0.198
MA0040.1	MA0040.1	0.844
MA0041.1	MA0041.1	0.803
MA0042.1	MA0042.1	0.873
MA0043.1	MA0043.1	5.46074e-5
MA0046.1	MA0046.1	0.144
MA0047.2	MA0047.2	0.149
MA0048.1	MA0048.1	8.96801e-5
MA0050.1	MA0050.1	0.965
MA0051.1	MA0051.1	0.55
MA0052.1	MA0052.1	4.54366e-5
MA0055.1	MA0055.1	2.76599e-4
MA0057.1	MA0057.1	0.475
MA0058.1	MA0058.1	0.0576
MA0059.1	MA0059.1	0.092
MA0060.1	MA0060.1	1.03488e-4
MA0061.1	MA0061.1	0.0161
MA0062.2	MA0062.2	1.20363e-4
MA0065.2	MA0065.2	0.862
MA0066.1	MA0066.1	0.311
MA0067.1	MA0067.1	6.96609e-4
MA0068.1	MA0068.1	0.521
MA0069.1	MA0069.1	0.735
MA0070.1	MA0070.1	0.306
MA0071.1	MA0071.1	0.708
MA0072.1	MA0072.1	0.202
MA0073.1	MA0073.1	0.775
MA0074.1	MA0074.1	0.953
MA0076.1	MA0076.1	3.121e-4
MA0077.1	MA0077.1	0.477
MA0078.1	MA0078.1	0.374
MA0079.2	MA0079.2	0.126
MA0080.2	MA0080.2	0.669
MA0081.1	MA0081.1	9.67582e-4
MA0083.1	MA0083.1	0.712
MA0084.1	MA0084.1	0.845
MA0087.1	MA0087.1	0.112
MA0088.1	MA0088.1	0.277
MA0090.1	MA0090.1	0.959
MA0091.1	MA0091.1	0.261
MA0092.1	MA0092.1	0.985
MA0093.1	MA0093.1	0.243
MA0099.2	MA0099.2	2.09223e-25
MA0100.1	MA0100.1	0.0051
MA0101.1	MA0101.1	0.00182
MA0102.2	MA0102.2	0.165
MA0103.1	MA0103.1	1.59246e-7
MA0104.2	MA0104.2	0.00764
MA0105.1	MA0105.1	2.09783e-4
MA0106.1	MA0106.1	0.168
MA0107.1	MA0107.1	0.00413
MA0108.2	MA0108.2	0.00615
MA0111.1	MA0111.1	0.538
MA0112.2	MA0112.2	0.00984
MA0113.1	MA0113.1	0.885
MA0114.1	MA0114.1	0.653
MA0115.1	MA0115.1	0.478
MA0116.1	MA0116.1	0.22
MA0117.1	MA0117.1	0.0885
MA0119.1	MA0119.1	0.435
MA0122.1	MA0122.1	0.71
MA0124.1	MA0124.1	0.745
MA0125.1	MA0125.1	0.885
MA0131.1	MA0131.1	0.0541
MA0135.1	MA0135.1	0.446
MA0136.1	MA0136.1	0.154
MA0137.2	MA0137.2	0.325
MA0138.2	MA0138.2	0.2
MA0139.1	MA0139.1	0.815
MA0140.1	MA0140.1	0.124
MA0141.1	MA0141.1	0.137
MA0142.1	MA0142.1	0.635
MA0143.1	MA0143.1	0.391
MA0144.1	MA0144.1	0.989
MA0145.1	MA0145.1	0.00976
MA0146.1	MA0146.1	0.397
MA0147.1	MA0147.1	0.00628
MA0148.1	MA0148.1	0.305
MA0149.1	MA0149.1	0.168
MA0150.1	MA0150.1	1.36508e-7
MA0152.1	MA0152.1	0.159
MA0153.1	MA0153.1	0.488
MA0154.1	MA0154.1	0.96
MA0155.1	MA0155.1	0.323
MA0156.1	MA0156.1	0.227
MA0157.1	MA0157.1	0.941
MA0159.1	MA0159.1	0.569
MA0160.1	MA0160.1	0.403
MA0162.1	MA0162.1	0.406
MA0163.1	MA0163.1	0.00248
MA0164.1	MA0164.1	0.465
MA0258.1	MA0258.1	0.0546
MA0259.1	MA0259.1	0.0762

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12852

Novel motif	Logo	P-value
1	1	0.873
10	10	0.0502
100	100	0.749
101	101	0.791
102	102	0.596
103	103	0.93
104	104	0.161
105	105	0.0546
106	106	0.41
107	107	0.0477
108	108	0.1
109	109	0.381
11	11	0.807
110	110	0.465
111	111	0.659
112	112	0.158
113	113	0.469
114	114	0.817
115	115	0.622
116	116	0.271
117	117	0.14
118	118	0.0843
119	119	0.159
12	12	0.316
120	120	0.068
121	121	0.994
122	122	0.51
123	123	0.545
124	124	0.521
125	125	0.788
126	126	0.0875
127	127	0.369
128	128	0.0691
129	129	0.616
13	13	0.461
130	130	0.445
131	131	0.866
132	132	0.0584
133	133	0.232
134	134	0.0156
135	135	0.867
136	136	0.81
137	137	0.509
138	138	0.343
139	139	0.212
14	14	0.446
140	140	0.4
141	141	0.431
142	142	0.978
143	143	0.419
144	144	0.569
145	145	0.314
146	146	0.0846
147	147	0.689
148	148	0.628
149	149	0.298
15	15	0.454
150	150	0.985
151	151	0.578
152	152	0.205
153	153	0.685
154	154	0.814
155	155	0.924
156	156	0.329
157	157	0.845
158	158	0.461
159	159	0.0285
16	16	0.619
160	160	0.666
161	161	0.637
162	162	0.214
163	163	0.257
164	164	0.277
165	165	0.719
166	166	0.673
167	167	0.0445
168	168	0.301
169	169	0.1
17	17	0.679
18	18	0.353
19	19	0.245
2	2	0.0149
20	20	0.0122
21	21	0.842
22	22	0.755
23	23	0.591
24	24	0.531
25	25	0.884
26	26	0.82
27	27	0.214
28	28	0.958
29	29	0.297
3	3	0.601
30	30	0.007
31	31	0.572
32	32	0.68
33	33	0.94
34	34	0.713
35	35	0.675
36	36	0.00384
37	37	0.487
38	38	0.524
39	39	0.413
4	4	0.575
40	40	0.153
41	41	0.0923
42	42	0.411
43	43	0.941
44	44	0.106
45	45	0.134
46	46	0.935
47	47	0.726
48	48	0.904
49	49	0.605
5	5	0.336
50	50	0.723
51	51	0.81
52	52	0.193
53	53	0.982
54	54	0.904
55	55	0.45
56	56	0.754
57	57	0.758
58	58	0.559
59	59	0.198
6	6	0.433
60	60	0.313
61	61	0.55
62	62	0.888
63	63	0.387
64	64	0.85
65	65	0.516
66	66	0.103
67	67	0.502
68	68	0.274
69	69	0.394
7	7	0.823
70	70	0.311
71	71	0.246
72	72	0.362
73	73	0.757
74	74	0.901
75	75	0.15
76	76	0.117
77	77	0.00191
78	78	0.277
79	79	0.66
8	8	0.667
80	80	0.956
81	81	0.0467
82	82	0.657
83	83	0.476
84	84	0.638
85	85	0.0536
86	86	0.693
87	87	0.973
88	88	0.704
89	89	0.181
9	9	0.912
90	90	0.892
91	91	0.668
92	92	0.395
93	93	0.204
94	94	0.0659
95	95	0.0342
96	96	0.283
97	97	0.218
98	98	0.593
99	99	0.234

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12852

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010202 human submaxillary gland - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001044 (saliva-secreting gland)
0001736 (submandibular gland)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0001829 (major salivary gland)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010202 (human submaxillary gland - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0006298 (submandibular gland primordium)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0001044,UBERON:0001736,UBERON:0002530,UBERON:0000033,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0000161,UBERON:0005423,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0000078,UBERON:0003293,UBERON:0003294,UBERON:0010047,UBERON:0001829,UBERON:0002365,UBERON:0003104,UBERON:0000464,UBERON:0001048,UBERON:0000925,UBERON:0003408,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0000165,UBERON:0007026,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330,UBERON:0009142,UBERON:0000930,UBERON:0006601,UBERON:0006595,UBERON:0006603,UBERON:0006298
+|DRA_sample_Accession=CAGE@SAMD00005592
+|accession_numbers=CAGE;DRX008733;DRR009605;DRZ001030;DRZ002415;DRZ012380;DRZ013765
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001044,UBERON:0001736,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0001829,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010202
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.66!459.19!EHF;;chr2:122042770..122042785,-!p1@TFCP2L1!2.32!208.26!TFCP2L1;;chr7:97840743..97840786,+!p1@BHLHA15!2.26!182.12!BHLHA15;;chr22:38380543..38380569,-!p1@SOX10!2.22!165.60!SOX10;;chr11:129245526..129245553,+!p1@BARX2!2.06!112.85!BARX2;;chr11:34535297..34535317,-!p1@ELF5!2.04!109.64!ELF5;;chr14:37131058..37131139,+!p1@PAX9!2.00!98.17!PAX9;;chr6:34524093..34524135,-!p1@SPDEF!1.92!81.65!SPDEF;;chr11:34535332..34535347,-!p2@ELF5!1.91!80.28!ELF5;;chr6:34524049..34524089,-!p2@SPDEF!1.91!79.82!SPDEF;;chr11:34645791..34645836,+!p3@EHF!1.88!74.77!EHF;;chr17:80797886..80797906,-!p1@ZNF750!1.87!72.48!ZNF750;;chr1:151804244..151804310,-!p1@RORC!1.86!71.10!RORC;;chr22:29196433..29196445,-!p4@XBP1!1.80!68.81!XBP1;;chr7:14028488..14028516,-!p2@ETV1!1.72!56.88!ETV1;;chr1:201979743..201979762,+!p1@ELF3!1.70!49.08!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.70!48.63!PITX1;;chr6:391743..391759,+!p1@IRF4!1.69!48.17!IRF4;;chr11:34642656..34642667,+!p2@EHF!1.63!41.74!EHF;;chr5:2751762..2751784,-!p1@IRX2!1.63!41.29!IRX2;;chr22:29196492..29196503,-!p3@XBP1!1.59!58.26!XBP1;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!48.63!FOXQ1;;chr16:85932760..85932775,+!p1@IRF8!1.47!28.44!IRF8;;chr2:19558373..19558392,-!p1@OSR1!1.46!74.77!OSR1;;chr14:61116183..61116208,-!p1@SIX1!1.45!100.00!SIX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.43!33.03!TFAP2C;;chr13:37446984..37446995,-!p13@SMAD9!1.43!25.69!SMAD9;;chr11:129245736..129245758,+!p2@BARX2!1.42!25.23!BARX2;;chr5:134369905..134369972,-!p1@PITX1!1.40!36.70!PITX1;;chr11:111249993..111250006,-!p1@POU2AF1!1.40!24.31!POU2AF1;;chr1:201979703..201979721,+!p2@ELF3!1.38!22.94!ELF3;;chr17:53342311..53342400,+!p1@HLF!1.37!25.69!HLF;;chr10:102891048..102891078,+!p1@TLX1!1.37!22.48!TLX1;;chr9:14180778..14180808,-!p15@NFIB!1.37!22.48!NFIB;;chr1:209979467..209979494,-!p1@IRF6!1.36!24.77!IRF6;;chrY:21906594..21906622,-!p1@KDM5D!1.34!21.10!KDM5D;;chr19:50922187..50922204,+!p1@SPIB!1.34!20.64!SPIB;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.34!20.64!PEG3;;chr20:62680984..62680999,-!p1@SOX18!1.33!26.61!SOX18;;chr8:102504651..102504683,+!p1@GRHL2!1.32!19.73!GRHL2;;chr10:8096631..8096660,+!p1@GATA3!1.28!21.56!GATA3;;chr13:37446840..37446847,-!p15@SMAD9!1.25!16.97!SMAD9;;chr20:50159198..50159299,-!p1@NFATC2!1.24!23.85!NFATC2;;chr12:52437488..52437507,+!p2@NR4A1!1.24!16.51!NR4A1;;chr1:10754477..10754517,-!p1@CASZ1!1.23!26.15!CASZ1;;chr4:149363494..149363543,-!p1@NR3C2!1.23!16.06!NR3C2;;chr6:34524025..34524045,-!p3@SPDEF!1.21!15.14!SPDEF;;chr1:217251619..217251658,-!p6@ESRRG!1.18!14.22!ESRRG;;chr19:13135582..13135600,+!p3@NFIX!1.18!14.22!NFIX;;chr12:52445218..52445237,+!p1@NR4A1!1.17!172.48!NR4A1;;chr17:70117153..70117174,+!p1@SOX9!1.17!139.45!SOX9;;chr15:42749722..42749739,-!p2@ZFP106!1.17!24.77!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.17!19.73!ZBTB16;;chr16:1031762..1031781,+!p1@SOX8!1.17!13.76!SOX8;;chr9:129376201..129376225,+!p1@LMX1B!1.16!13.30!LMX1B;;chr22:41763452..41763466,+!p2@TEF!1.16!13.30!TEF;;chr3:71355163..71355209,-!p5@FOXP1!1.15!18.35!FOXP1;;chr1:170632285..170632309,+!p1@PRRX1!1.14!14.68!PRRX1;;chr1:153940716..153940739,+!p4@CREB3L4!1.14!12.84!CREB3L4;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.39!HIF3A;;chr1:10856639..10856662,-!p2@CASZ1!1.13!12.39!CASZ1;;chr2:231090433..231090469,+!p1@SP140!1.13!12.39!SP140;;chr5:2751785..2751808,-!p2@IRX2!1.13!12.39!IRX2;;chr9:129376233..129376251,+!p2@LMX1B!1.13!12.39!LMX1B;;chrY:2803415..2803468,+!p1@ZFY!1.11!11.93!ZFY;;chr1:217250308..217250349,-!p9@ESRRG!1.10!11.47!ESRRG;;chr9:22447422..22447483,+!p1@DMRTA1!1.08!11.01!DMRTA1;;chr2:68592406..68592424,+!p1@PLEK!1.08!11.01!PLEK;;chr4:149363475..149363492,-!p2@NR3C2!1.08!11.01!NR3C2;;chr14:38064429..38064486,-!p1@FOXA1!1.08!11.01!FOXA1;;chr3:114819124..114819200,-!p3@ZBTB20!1.07!25.23!ZBTB20;;chr6:10415276..10415341,-!p2@TFAP2A!1.06!12.84!TFAP2A;;chr6:1612300..1612324,+!p3@FOXC1!1.06!10.55!FOXC1;;chr7:14026022..14026044,-!p7@ETV1!1.06!10.55!ETV1;;chr21:39870339..39870443,-!p1@ERG!1.05!10.09!ERG;;chr22:29196547..29196563,-!p2@XBP1!1.02!355.97!XBP1;;chr1:164528410..164528428,+!p1@PBX1!1.01!70.64!PBX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.01!48.63!CREB3L1;;chr6:1610293..1610310,+!p1@FOXC1!1.01!15.60!FOXC1;;chr7:15726296..15726315,-!p1@MEOX2!1.01!9.17!MEOX2;;chrX:107018969..107019024,-!p6@TSC22D3!0.99!12.39!TSC22D3;;chr11:34654104..34654118,+!p5@EHF!0.99!8.72!EHF;;chr3:18466787..18466839,-!p1@SATB1!0.98!38.99!SATB1;;chr2:66662249..66662267,+!p2@MEIS1!0.98!33.49!MEIS1;;chr16:54320646..54320672,-!p2@IRX3!0.97!12.84!IRX3;;chr16:54320101..54320125,-!p4@IRX3!0.97!11.93!IRX3;;chr3:114819101..114819121,-!p7@ZBTB20!0.97!8.26!ZBTB20;;chr11:47400078..47400106,-!p1@SPI1!0.97!8.26!SPI1;;chr12:52449834..52449859,+!p16@NR4A1!0.97!8.26!NR4A1;;chr19:49140609..49140643,-!p1@DBP!0.96!46.79!DBP;;chr12:26277956..26277980,-!p1@BHLHE41!0.96!30.28!BHLHE41;;chr1:61547894..61547968,+!p2@NFIA!0.96!24.31!NFIA;;chr1:61548069..61548102,+!p3@NFIA!0.94!19.27!NFIA;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001829;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0006298,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/submaxillary%2520gland%252c%2520adult.CNhs12852.10202-103F4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/submaxillary%2520gland%252c%2520adult.CNhs12852.10202-103F4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/submaxillary%2520gland%252c%2520adult.CNhs12852.10202-103F4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/submaxillary%2520gland%252c%2520adult.CNhs12852.10202-103F4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/submaxillary%2520gland%252c%2520adult.CNhs12852.10202-103F4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10202-103F4
 |is_a=EFO:0002091;;FF:0010202
 |is_obsolete=
+|library_id=CNhs12852
+|library_id_phase_based=2:CNhs12852
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10202
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10202
 |name=submaxillary gland, adult
 |namespace=FANTOM5
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12852,LSID973,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=103
 |rna_catalog_number=R1234165-10
@@ Line 58: / Line 78: @@
 |rna_tube_id=103F4
 |rna_weight_ug=10
-|sample_age=M
+|sample_age=24
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 74: / Line 95: @@
 |sample_id=10202
 |sample_note=
-|sample_sex=24
+|sample_sex=M
 |sample_species=Human (Homo sapiens)
 |sample_strain=
@@ Line 80: / Line 101: @@
 |top_motifs=TFAP4:3.93984428208;ALX1:3.0191642277;MYOD1:2.53524486399;ARID5B:2.29539250871;SNAI1..3:2.27740742538;SOX5:2.17802407016;ZEB1:1.89166260563;LMO2:1.7742131138;ATF6:1.75080377152;NR5A1,2:1.62885156402;NR6A1:1.56079506172;MEF2{A,B,C,D}:1.50349075105;FOXA2:1.45036208463;HMX1:1.43338670252;TFAP2{A,C}:1.42171420155;TLX2:1.41830660563;POU6F1:1.35985859714;AR:1.30410789668;XBP1:1.28136238936;PAX6:1.1562095142;IRF7:1.1444621135;TGIF1:1.08965875059;ESR1:1.0633126347;SP1:1.03073533417;T:0.946440145655;SPZ1:0.8996466276;TFCP2:0.828794513525;NKX6-1,2:0.82078258214;NFE2L1:0.807968590225;NR1H4:0.800918399145;MAZ:0.796973533081;TBX4,5:0.786662684048;HES1:0.782147090582;TBP:0.765967698317;POU2F1..3:0.744293402665;EP300:0.720376644599;IKZF1:0.713205605767;HIC1:0.700884882504;LHX3,4:0.694895805208;AIRE:0.685883655719;BREu{core}:0.670643488077;FOXO1,3,4:0.665591998279;MYFfamily:0.594714420808;RXRA_VDR{dimer}:0.59452283671;TLX1..3_NFIC{dimer}:0.569518116485;NKX2-3_NKX2-5:0.564133322731;ETS1,2:0.549499313099;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.548644109717;NFATC1..3:0.535374863706;GCM1,2:0.533994998968;IKZF2:0.533140470518;FOXN1:0.508742613454;FOXL1:0.508512607854;IRF1,2:0.47708216862;PATZ1:0.475089071071;ZBTB6:0.446905012259;NFIL3:0.444669937996;TFAP2B:0.44352052801;ESRRA:0.442171117263;MTF1:0.404627649929;ELF1,2,4:0.366182422034;DMAP1_NCOR{1,2}_SMARC:0.366112175456;MTE{core}:0.362997846925;NFIX:0.349209929113;HAND1,2:0.347273962793;CDC5L:0.343491025102;REST:0.342180453968;SRF:0.335485817238;MAFB:0.326313302317;GTF2I:0.320724683148;ZIC1..3:0.301813815601;HOX{A4,D4}:0.29552237641;HOX{A6,A7,B6,B7}:0.285475067974;GATA4:0.276970286289;SMAD1..7,9:0.254283664357;CRX:0.24290089504;TAL1_TCF{3,4,12}:0.227854523576;RUNX1..3:0.208199564175;SPI1:0.204885387386;GTF2A1,2:0.204877216191;FOX{D1,D2}:0.203022185286;POU5F1:0.189255709916;ATF2:0.142262764641;ZFP161:0.137142533098;BPTF:0.118722148728;HIF1A:0.102516136032;NKX2-1,4:0.100183361674;TEAD1:0.0949126427046;PBX1:0.0672275863886;XCPE1{core}:0.052749500028;NHLH1,2:0.0363571390006;FOXP1:0.0351547930709;MED-1{core}:0.0289028929349;SPIB:0.0118245050808;CUX2:0.00839501226487;VSX1,2:0.00396390409338;STAT1,3:-0.00234900572251;MZF1:-0.0133102265695;EBF1:-0.0206962375322;TOPORS:-0.0297391176958;EGR1..3:-0.0389506466226;PDX1:-0.0400838839632;FOX{F1,F2,J1}:-0.0409941445402;ZNF148:-0.048975449115;GATA6:-0.0893605790971;NANOG:-0.0936870196361;RREB1:-0.10497809543;UFEwm:-0.116838642457;PITX1..3:-0.158217203147;FOXP3:-0.186001524358;HNF4A_NR2F1,2:-0.197400517524;PRDM1:-0.219435192885;ZNF384:-0.220187510576;FOXQ1:-0.222661767794;CEBPA,B_DDIT3:-0.240223460226;ZNF143:-0.24996475893;MYBL2:-0.251325944127;KLF4:-0.257554931988;GLI1..3:-0.257751080725;HOXA9_MEIS1:-0.259148159612;NKX3-1:-0.274989901384;LEF1_TCF7_TCF7L1,2:-0.282105027514;GFI1B:-0.286351180615;SOX{8,9,10}:-0.286872599596;SOX2:-0.295913713528;RBPJ:-0.301888322323;SOX17:-0.30460838293;PAX5:-0.331840499385;NFKB1_REL_RELA:-0.337869943888;bHLH_family:-0.340879859443;SREBF1,2:-0.342920902249;FOXM1:-0.352218383294;PPARG:-0.370906988717;ZBTB16:-0.372882922022;NKX3-2:-0.389919797664;ZNF238:-0.427902662948;TEF:-0.432887461603;HNF1A:-0.460556582498;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.463761690237;ALX4:-0.516404349307;POU1F1:-0.518031157564;FOX{I1,J2}:-0.556534106087;YY1:-0.565134162303;DBP:-0.582233053829;ADNP_IRX_SIX_ZHX:-0.613796215612;STAT2,4,6:-0.621861734672;NRF1:-0.629375139263;ZNF423:-0.634130532945;ATF5_CREB3:-0.634296655363;GZF1:-0.638632147311;PAX1,9:-0.655817806831;CREB1:-0.707292360239;GFI1:-0.72476009991;NFY{A,B,C}:-0.726281274332;HBP1_HMGB_SSRP1_UBTF:-0.752181806999;TP53:-0.756337734949;RFX1:-0.756769133854;STAT5{A,B}:-0.759189240646;CDX1,2,4:-0.772321395078;FOS_FOS{B,L1}_JUN{B,D}:-0.787713583209;PAX3,7:-0.791206894797;FOSL2:-0.795927202034;POU3F1..4:-0.807507079403;RXR{A,B,G}:-0.80868205409;ELK1,4_GABP{A,B1}:-0.850927074315;HMGA1,2:-0.854080292213;HLF:-0.862915875652;JUN:-0.867854612622;ONECUT1,2:-0.877534955367;ATF4:-0.889243311125;BACH2:-0.952134072845;NANOG{mouse}:-0.987298952835;OCT4_SOX2{dimer}:-1.00877185443;AHR_ARNT_ARNT2:-1.01882633189;RFX2..5_RFXANK_RFXAP:-1.0688066658;NFE2L2:-1.11716217647;TFDP1:-1.20143401581;E2F1..5:-1.2263651997;NFE2:-1.23895046031;NKX2-2,8:-1.24655976556;EN1,2:-1.26047132036;PRRX1,2:-1.26474561216;PAX2:-1.29366990976;HSF1,2:-1.38810743412;EVI1:-1.40602284184;RORA:-1.47493427897;MYB:-1.52887397522;PAX4:-1.68487653837;NR3C1:-1.73749125934;HOX{A5,B5}:-1.94225616909;FOXD3:-2.23509671024;PAX8:-2.83642563567
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10202-103F4;search_select_hide=table117:FF:10202-103F4
 }}

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FF:10202-103F4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:56, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0