FF:10180-103C9: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	pituitary gland - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13805
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pituitary gland
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005584

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13805		CAGE		DRX008708		DRR009580

Accession ID Hg19

Library id		BAM		CTSS
CNhs13805		DRZ001005		DRZ002390

Accession ID Hg38

Library id		BAM		CTSS
CNhs13805		DRZ012355		DRZ013740

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.177
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.402
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.345
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0.849
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	1.551
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.206
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.263
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.327
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0303
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.166
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.932
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.138
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.768
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0515
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.206
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0279
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.352
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.206
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.663
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0538
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.345
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13805

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00555
MA0003.1	MA0003.1	0.215
MA0004.1	MA0004.1	0.282
MA0006.1	MA0006.1	0.293
MA0007.1	MA0007.1	0.604
MA0009.1	MA0009.1	0.672
MA0014.1	MA0014.1	0.927
MA0017.1	MA0017.1	0.0256
MA0018.2	MA0018.2	2.49177e-4
MA0019.1	MA0019.1	0.729
MA0024.1	MA0024.1	0.292
MA0025.1	MA0025.1	0.666
MA0027.1	MA0027.1	0.193
MA0028.1	MA0028.1	0.494
MA0029.1	MA0029.1	0.223
MA0030.1	MA0030.1	0.0561
MA0031.1	MA0031.1	0.944
MA0035.2	MA0035.2	0.0619
MA0038.1	MA0038.1	0.867
MA0039.2	MA0039.2	0.287
MA0040.1	MA0040.1	0.918
MA0041.1	MA0041.1	0.471
MA0042.1	MA0042.1	0.425
MA0043.1	MA0043.1	0.00744
MA0046.1	MA0046.1	0.192
MA0047.2	MA0047.2	0.192
MA0048.1	MA0048.1	0.0365
MA0050.1	MA0050.1	0.033
MA0051.1	MA0051.1	0.232
MA0052.1	MA0052.1	0.582
MA0055.1	MA0055.1	0.0312
MA0057.1	MA0057.1	0.362
MA0058.1	MA0058.1	0.287
MA0059.1	MA0059.1	0.0634
MA0060.1	MA0060.1	0.456
MA0061.1	MA0061.1	0.00122
MA0062.2	MA0062.2	0.899
MA0065.2	MA0065.2	1.68275e-4
MA0066.1	MA0066.1	0.0862
MA0067.1	MA0067.1	0.851
MA0068.1	MA0068.1	0.0872
MA0069.1	MA0069.1	0.77
MA0070.1	MA0070.1	0.745
MA0071.1	MA0071.1	0.0911
MA0072.1	MA0072.1	0.462
MA0073.1	MA0073.1	0.451
MA0074.1	MA0074.1	0.0612
MA0076.1	MA0076.1	0.0939
MA0077.1	MA0077.1	0.823
MA0078.1	MA0078.1	0.191
MA0079.2	MA0079.2	0.545
MA0080.2	MA0080.2	3.17484e-10
MA0081.1	MA0081.1	0.105
MA0083.1	MA0083.1	6.04598e-4
MA0084.1	MA0084.1	0.498
MA0087.1	MA0087.1	0.432
MA0088.1	MA0088.1	0.542
MA0090.1	MA0090.1	0.723
MA0091.1	MA0091.1	0.694
MA0092.1	MA0092.1	0.233
MA0093.1	MA0093.1	0.301
MA0099.2	MA0099.2	2.94101e-15
MA0100.1	MA0100.1	0.563
MA0101.1	MA0101.1	7.89905e-4
MA0102.2	MA0102.2	0.579
MA0103.1	MA0103.1	0.144
MA0104.2	MA0104.2	0.305
MA0105.1	MA0105.1	0.00216
MA0106.1	MA0106.1	0.0344
MA0107.1	MA0107.1	3.35378e-4
MA0108.2	MA0108.2	0.497
MA0111.1	MA0111.1	0.792
MA0112.2	MA0112.2	5.51689e-4
MA0113.1	MA0113.1	0.901
MA0114.1	MA0114.1	0.00574
MA0115.1	MA0115.1	0.801
MA0116.1	MA0116.1	0.0108
MA0117.1	MA0117.1	0.53
MA0119.1	MA0119.1	0.0209
MA0122.1	MA0122.1	0.281
MA0124.1	MA0124.1	0.87
MA0125.1	MA0125.1	0.326
MA0131.1	MA0131.1	0.89
MA0135.1	MA0135.1	0.0252
MA0136.1	MA0136.1	2.57381e-6
MA0137.2	MA0137.2	0.175
MA0138.2	MA0138.2	0.0485
MA0139.1	MA0139.1	0.473
MA0140.1	MA0140.1	0.00346
MA0141.1	MA0141.1	0.0271
MA0142.1	MA0142.1	0.868
MA0143.1	MA0143.1	0.437
MA0144.1	MA0144.1	0.673
MA0145.1	MA0145.1	0.0998
MA0146.1	MA0146.1	0.00886
MA0147.1	MA0147.1	0.219
MA0148.1	MA0148.1	0.131
MA0149.1	MA0149.1	0.0391
MA0150.1	MA0150.1	0.00758
MA0152.1	MA0152.1	0.739
MA0153.1	MA0153.1	0.766
MA0154.1	MA0154.1	0.0106
MA0155.1	MA0155.1	0.455
MA0156.1	MA0156.1	0.00258
MA0157.1	MA0157.1	0.229
MA0159.1	MA0159.1	0.258
MA0160.1	MA0160.1	0.0482
MA0162.1	MA0162.1	0.0605
MA0163.1	MA0163.1	3.48736e-5
MA0164.1	MA0164.1	0.487
MA0258.1	MA0258.1	0.00552
MA0259.1	MA0259.1	0.755

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13805

Novel motif	Logo	P-value
1	1	0.142
10	10	0.0569
100	100	0.545
101	101	0.765
102	102	0.922
103	103	0.123
104	104	0.382
105	105	0.419
106	106	3.98295e-4
107	107	0.0147
108	108	0.733
109	109	0.025
11	11	0.0428
110	110	0.137
111	111	0.188
112	112	0.778
113	113	0.361
114	114	0.247
115	115	0.964
116	116	0.0836
117	117	0.0806
118	118	0.268
119	119	0.129
12	12	0.982
120	120	0.162
121	121	0.735
122	122	0.592
123	123	0.466
124	124	0.925
125	125	0.26
126	126	0.19
127	127	0.357
128	128	0.0444
129	129	0.229
13	13	0.00818
130	130	0.103
131	131	0.167
132	132	0.777
133	133	0.0114
134	134	0.558
135	135	0.042
136	136	0.167
137	137	0.0181
138	138	0.759
139	139	0.683
14	14	0.996
140	140	0.742
141	141	0.955
142	142	0.934
143	143	0.0604
144	144	0.564
145	145	0.0913
146	146	0.221
147	147	0.802
148	148	0.0446
149	149	0.204
15	15	0.13
150	150	0.132
151	151	0.465
152	152	0.0246
153	153	0.852
154	154	0.914
155	155	0.755
156	156	0.464
157	157	0.326
158	158	0.0501
159	159	0.0149
16	16	0.163
160	160	0.0353
161	161	0.39
162	162	0.836
163	163	0.833
164	164	0.189
165	165	0.21
166	166	0.752
167	167	0.763
168	168	0.0597
169	169	0.00402
17	17	0.0648
18	18	0.11
19	19	0.139
2	2	0.517
20	20	0.747
21	21	0.0382
22	22	0.0493
23	23	0.0271
24	24	0.0678
25	25	0.699
26	26	0.0012
27	27	0.559
28	28	0.737
29	29	0.049
3	3	0.117
30	30	0.894
31	31	0.862
32	32	0.018
33	33	0.109
34	34	0.374
35	35	0.774
36	36	0.216
37	37	0.101
38	38	0.158
39	39	0.13
4	4	0.922
40	40	0.103
41	41	0.257
42	42	0.493
43	43	0.0913
44	44	0.262
45	45	0.455
46	46	0.0734
47	47	0.199
48	48	0.103
49	49	0.121
5	5	0.345
50	50	0.203
51	51	0.347
52	52	0.112
53	53	0.565
54	54	0.351
55	55	0.616
56	56	0.693
57	57	0.27
58	58	0.629
59	59	0.0184
6	6	0.409
60	60	0.0167
61	61	0.207
62	62	0.157
63	63	0.0394
64	64	0.272
65	65	0.0604
66	66	0.142
67	67	0.46
68	68	0.391
69	69	0.284
7	7	0.121
70	70	0.206
71	71	0.0426
72	72	0.956
73	73	0.0524
74	74	0.598
75	75	0.0997
76	76	0.769
77	77	0.0971
78	78	0.0228
79	79	0.71
8	8	0.0573
80	80	0.716
81	81	0.32
82	82	0.56
83	83	0.0457
84	84	0.366
85	85	0.165
86	86	0.218
87	87	5.59295e-4
88	88	0.41
89	89	0.579
9	9	0.239
90	90	0.344
91	91	0.639
92	92	0.761
93	93	0.534
94	94	0.284
95	95	0.11
96	96	0.496
97	97	0.842
98	98	0.601
99	99	0.281

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13805

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010162 human pituitary gland - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000007 (pituitary gland)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010162 (human pituitary gland - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005584
+|accession_numbers=CAGE;DRX008708;DRR009580;DRZ001005;DRZ002390;DRZ012355;DRZ013740
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000007,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002530,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:87325728..87325739,-!p1@POU1F1!2.39!245.21!POU1F1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.39!244.00!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!2.07!290.13!ZNF483;;chr5:134369879..134369898,-!p2@PITX1!1.75!55.23!PITX1;;chr19:46801639..46801699,+!p1@HIF3A!1.66!44.31!HIF3A;;chr3:87325636..87325643,-!p2@POU1F1!1.65!43.70!POU1F1;;chr7:63505799..63505904,+!p1@ZNF727!1.63!41.88!ZNF727;;chr12:55413751..55413765,+!p1@NEUROD4!1.63!41.27!NEUROD4;;chr5:134369905..134369972,-!p1@PITX1!1.61!59.48!PITX1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.59!78.91!ZNF395;;chr11:113930425..113930471,+!p1@ZBTB16!1.58!52.20!ZBTB16;;chr1:214161272..214161322,+!p1@PROX1!1.58!50.99!PROX1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.59!ZNF540;;chr3:114477881..114477914,-!p17@ZBTB20!1.53!32.78!ZBTB20;;chr1:165414325..165414369,-!p1@RXRG!1.51!31.56!RXRG;;chr20:20348740..20348757,+!p1@INSM1!1.50!30.35!INSM1;;chr10:35484053..35484076,+!p1@CREM!1.49!72.23!CREM;;chr13:72441315..72441454,-!p1@DACH1!1.49!58.27!DACH1;;chr2:166326200..166326216,+!p1@CSRNP3!1.48!41.88!CSRNP3;;chr14:60975883..60975911,+!p1@SIX6!1.45!27.31!SIX6;;chr19:54041669..54041697,+!p2@ZNF331!1.45!27.31!ZNF331;;chr4:81118647..81118666,+!p1@PRDM8!1.44!35.20!PRDM8;;chr17:53342311..53342400,+!p1@HLF!1.40!27.31!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.40!24.28!SOX2;;chr2:2334997..2335053,-!p1@MYT1L!1.35!21.24!MYT1L;;chr14:60975858..60975869,+!p2@SIX6!1.35!21.24!SIX6;;chr2:45168834..45168847,+!p2@SIX3!1.30!18.82!SIX3;;chr19:54058073..54058088,+!p1@ZNF331!1.30!18.82!ZNF331;;chr8:53166899..53166914,-!p3@ST18!1.27!17.60!ST18;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.27!17.60!ZBED1;;chr14:61116183..61116208,-!p1@SIX1!1.26!64.95!SIX1;;chr11:16629261..16629284,-!p1@SOX6!1.22!15.78!SOX6;;chr12:103351444..103351461,+!p1@ASCL1!1.21!15.17!ASCL1;;chr2:45168875..45168916,+!p1@SIX3!1.21!15.17!SIX3;;chr2:95963052..95963106,+!p1@KCNIP3!1.21!15.17!KCNIP3;;chr19:58545369..58545404,+!p2@ZSCAN1!1.21!15.17!ZSCAN1;;chr12:52445218..52445237,+!p1@NR4A1!1.19!178.45!NR4A1;;chr12:106976678..106976708,+!p2@RFX4!1.19!14.57!RFX4;;chr5:178368186..178368238,+!p1@ZNF454!1.17!24.89!ZNF454;;chr19:57352109..57352153,-!p2@ZIM2!1.17!13.96!ZIM2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.16!74.66!ZNF10;;chr3:114819124..114819200,-!p3@ZBTB20!1.16!31.56!ZBTB20;;chr1:209979467..209979494,-!p1@IRF6!1.16!15.17!IRF6;;chr19:22193731..22193751,-!p1@ZNF208!1.16!13.35!ZNF208;;chr10:35484804..35484902,+!p2@CREM!1.15!49.77!CREM;;chr2:192015750..192015793,-!p2@STAT4!1.15!17.60!STAT4;;chr19:46800289..46800327,+!p2@HIF3A!1.12!12.14!HIF3A;;chr8:40755333..40755352,-!p1@ZMAT4!1.12!12.14!ZMAT4;;chr12:24102576..24102623,-!p2@SOX5!1.12!12.14!SOX5;;chr4:206390..206444,+!p1@ZNF876P!1.11!21.24!ZNF876P;;chrX:101186981..101187030,-!p1@ZMAT1!1.10!37.63!ZMAT1;;chr11:113930291..113930339,+!p2@ZBTB16!1.10!18.82!ZBTB16;;chr11:66188503..66188511,+!p1@NPAS4!1.10!11.53!NPAS4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.10!11.53!RUNX1T1;;chr17:80797886..80797906,-!p1@ZNF750!1.10!11.53!ZNF750;;chr2:2328299..2328363,-!p3@MYT1L!1.08!10.93!MYT1L;;chr3:114173720..114173794,-!p6@ZBTB20!1.08!10.93!ZBTB20;;chr14:58797974..58798011,+!p3@ARID4A!1.08!10.93!ARID4A;;chr19:56988677..56988729,-!p1@ZNF667!1.06!18.82!ZNF667;;chr3:24206603..24206613,-!p17@THRB!1.05!10.32!THRB;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!1.04!65.55!ZNF580;;chr10:35484090..35484104,+!p6@CREM!1.03!9.71!CREM;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.71!ZBTB16;;chr14:74256787..74256858,-!p6@C14orf43!1.03!9.71!C14orf43;;chrX:24169518..24169522,+!p8@ZFX!1.03!9.71!ZFX;;chr2:45168997..45169020,+!p4@SIX3!1.03!9.71!SIX3;;chr8:10588010..10588030,-!p1@SOX7!1.03!9.71!SOX7;;chr6:144329384..144329405,-!p1@PLAGL1!1.02!111.68!PLAGL1;;chr3:114866124..114866149,-!p5@ZBTB20!1.02!16.39!ZBTB20;;chr20:62680984..62680999,-!p1@SOX18!1.02!12.75!SOX18;;chr1:8585945..8586056,-!p3@RERE!1.00!30.96!RERE;;chr1:165414227..165414242,-!p2@RXRG!1.00!9.10!RXRG;;chr11:8040739..8040815,+!p4@TUB!1.00!9.10!TUB;;chr6:168333280..168333294,+!p9@MLLT4!1.00!9.10!MLLT4;;chr6:126112074..126112144,+!p1@NCOA7!0.99!119.57!NCOA7;;chr15:61521417..61521460,-!p2@RORA!0.98!19.42!RORA;;chr3:24536253..24536328,-!p1@THRB!0.98!16.39!THRB;;chr6:152126790..152126828,+!p3@ESR1!0.98!8.50!ESR1;;chr14:60975644..60975673,+!p3@SIX6!0.98!8.50!SIX6;;chr9:3525867..3525902,-!p3@RFX3!0.97!29.74!RFX3;;chr12:133707172..133707202,+!p2@ZNF10!0.97!19.42!ZNF10;;chr2:192015701..192015743,-!p1@STAT4!0.97!11.53!STAT4;;chr9:115818951..115819011,-!p1@ZFP37!0.96!25.49!ZFP37;;chr10:111987079..111987115,+!p3@MXI1!0.95!10.93!MXI1;;chr10:28034739..28034756,-!p1@MKX!0.95!7.89!MKX;;chr19:58545454..58545498,+!p1@ZSCAN1!0.95!7.89!ZSCAN1;;chr1:42384343..42384380,-!p4@HIVEP3!0.95!7.89!HIVEP3;;chr16:67198633..67198671,+!p1@HSF4!0.95!7.89!HSF4;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.95!7.89!SMARCE1;;chr2:45169193..45169219,+!p3@SIX3!0.95!7.89!SIX3;;chr3:181429741..181429767,+!p2@SOX2!0.95!7.89!SOX2;;chr3:24536231..24536249,-!p4@THRB!0.95!7.89!THRB;;chr4:149363494..149363543,-!p1@NR3C2!0.95!7.89!NR3C2;;chr8:77593474..77593612,+!p1@ZFHX4!0.94!33.99!ZFHX4;;chr19:38183208..38183225,-!p1@ZNF781!0.93!9.71!ZNF781;;chr9:77112244..77112262,+!p1@RORB!0.93!8.50!RORB;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.53!ZNF385A;;chr8:80679993..80680011,-!p1@HEY1!0.92!10.93!HEY1;;chr7:35293685..35293718,-!p1@TBX20!0.92!7.28!TBX20;;chr13:72441074..72441172,-!p2@DACH1!0.92!7.28!DACH1;;chrX:147582130..147582147,+!p3@AFF2!0.92!7.28!AFF2;;chr16:67197654..67197716,+!p3@HSF4!0.92!7.28!HSF4;;chr19:37998036..37998098,+!p2@ZNF793!0.91!9.10!ZNF793;;chr18:55102598..55102623,+!p1@ONECUT2!0.89!6.68!ONECUT2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.89!6.68!ZNF676;;chr12:106976656..106976672,+!p4@RFX4!0.89!6.68!RFX4;;chr14:29235961..29236008,+!p1@FOXG1!0.89!6.68!FOXG1;;chr14:58798013..58798071,+!p2@ARID4A!0.89!6.68!ARID4A;;chr22:21771656..21771662,+!p1@HIC2!0.89!6.68!HIC2;;chr2:45169143..45169167,+!p5@SIX3!0.89!6.68!SIX3;;chr1:151804244..151804310,-!p1@RORC!0.89!6.68!RORC;;chr1:165414414..165414430,-!p3@RXRG!0.89!6.68!RXRG;;chr19:37997812..37997866,+!p1@ZNF793!0.88!11.53!ZNF793;;chr6:144329500..144329526,-!p4@PLAGL1!0.87!15.78!PLAGL1;;chr12:56401268..56401305,+!p1@IKZF4!0.87!13.96!IKZF4;;chr6:144289132..144289134,-!p3@PLAGL1!0.86!15.17!PLAGL1;;chr20:45142154..45142227,-!p1@ZNF334!0.86!12.75!ZNF334;;chr18:6414884..6414942,-!p1@L3MBTL4!0.86!7.89!L3MBTL4;;chr4:146859927..146860055,-!p1@ZNF827!0.85!39.45!ZNF827;;chr19:11959532..11959593,+!p1@ZNF439!0.85!24.89!ZNF439;;chrX:84499081..84499115,+!p2@ZNF711!0.85!9.10!ZNF711;;chrX:101187036..101187056,-!p2@ZMAT1!0.85!6.68!ZMAT1;;chr1:40105299..40105326,-!p1@HEYL!0.85!6.07!HEYL;;chr4:111544219..111544240,-!p1@PITX2!0.85!6.07!PITX2;;chr10:43134047..43134079,-!p3@ZNF33B!0.84!8.50!ZNF33B;;chr2:113057415..113057477,+!p3@ZC3H6!0.84!7.89!ZC3H6;;chr19:45260775..45260838,+!p5@BCL3!0.84!7.89!BCL3;;chr19:44764031..44764072,+!p1@ZNF233!0.84!7.28!ZNF233;;chr15:77197655..77197716,-!p1@SCAPER!0.83!55.23!SCAPER;;chr5:88178983..88179012,-!p1@MEF2C!0.83!47.95!MEF2C;;chr7:21467674..21467727,+!p1@SP4!0.83!24.28!SP4;;chr1:47903709..47903764,+!p1@BC169308!0.83!6.68!FOXD2;;chr19:58220517..58220583,-!p1@ZNF154!0.82!18.82!ZNF154;;chr12:125003087..125003141,-!p4@NCOR2!0.82!7.28!NCOR2;;chr18:22932080..22932170,-!p1@ZNF521!0.81!24.89!ZNF521;;chr19:58238958..58239000,-!p1@ZNF671!0.81!23.67!ZNF671;;chr6:152011654..152011682,+!p1@ESR1!0.81!5.46!ESR1;;chr6:152126830..152126847,+!p4@ESR1!0.81!5.46!ESR1;;chr4:106068026..106068084,+!p1@TET2!0.80!51.59!TET2;;chr2:178128199..178128245,-!p3@NFE2L2!0.80!30.96!NFE2L2;;chr3:114866084..114866118,-!p2@ZBTB20!0.80!20.64!ZBTB20;;chr2:157198916..157198978,-!p2@NR4A2!0.80!20.03!NR4A2;;chr15:37390850..37390909,-!p3@MEIS2!0.80!10.93!MEIS2;;chr18:52989031..52989079,-!p2@TCF4!0.79!12.75!TCF4;;chr14:64970361..64970389,-!p4@ZBTB25!0.79!10.93!ZBTB25;;chr9:102584159..102584174,+!p2@NR4A3!0.79!9.71!NR4A3;;chrX:84498989..84499003,+!p1@ZNF711!0.79!7.28!ZNF711;;chr4:81105027..81105039,+!p3@PRDM8!0.79!6.07!PRDM8;;chr19:9434841..9434886,+!p1@ZNF559!0.78!27.92!ZNF559;;chr6:56954830..56954845,+!p3@ZNF451!0.78!11.53!ZNF451;;chr3:126076264..126076305,-!p2@KLF15!0.78!7.28!KLF15;;chr11:8102846..8102892,+!p1@TUB!0.78!7.28!TUB;;chr4:81104865..81104886,+!p6@PRDM8!0.78!5.46!PRDM8;;chr2:113033164..113033219,+!p1@ZC3H6!0.77!45.52!ZC3H6;;chr19:52674696..52674758,-!p1@ZNF836!0.77!15.78!ZNF836;;chr20:42136308..42136358,+!p2@L3MBTL1!0.77!6.68!L3MBTL;;chr10:64134120..64134183,+!p1@ZNF365!0.77!6.07!ZNF365;;chr11:125034605..125034636,+!p2@PKNOX2!0.77!4.86!PKNOX2;;chr11:47400078..47400106,-!p1@SPI1!0.77!4.86!SPI1;;chr2:45168959..45168990,+!p6@SIX3!0.77!4.86!SIX3;;chr3:138665937..138665968,-!p1@FOXL2!0.77!4.86!FOXL2;;chr3:24206934..24206942,-!p24@THRB!0.77!4.86!THRB;;chr15:31658288..31658338,+!p4@KLF13!0.77!4.86!KLF13;;chr17:80797863..80797874,-!p2@ZNF750!0.77!4.86!ZNF750;;chr19:37464453..37464515,+!p4@ZNF568!0.77!4.86!ZNF568;;chr19:54041574..54041589,+!p6@ZNF331!0.77!4.86!ZNF331;;chr21:39870339..39870443,-!p1@ERG!0.77!4.86!ERG;;chr5:71803177..71803255,-!p1@ZNF366!0.77!4.86!ZNF366;;chr6:152129265..152129276,+!p13@ESR1!0.77!4.86!ESR1;;chr7:100065686..100065701,-!p2@TSC22D4!0.77!4.86!TSC22D4;;chr8:30890810..30890880,-!p1@PURG!0.77!4.86!PURG;;chr19:37958086..37958150,-!p1@ZNF569!0.76!20.03!ZNF569;;chr3:44626446..44626477,+!p1@ZNF660!0.76!9.10!ZNF660;;chr6:144329531..144329546,-!p5@PLAGL1!0.76!7.89!PLAGL1;;chr6:19837592..19837621,+!p1@ID4!0.75!30.96!ID4;;chr3:44626359..44626387,+!p4@ZNF197!0.75!6.07!ZNF197;;chr3:169381420..169381535,-!p1@MECOM!0.75!5.46!MECOM;;chr13:41240737..41240787,-!p1@FOXO1!0.74!59.48!FOXO1;;chr4:87928413..87928433,+!p3@AFF1!0.74!30.96!AFF1;;chr19:38085633..38085706,-!p1@ZNF571!0.74!12.75!ZNF571;;chr3:42947600..42947680,+!p1@ZNF662!0.74!6.68!ZNF662;;chr1:164528297..164528309,+!p9@PBX1!0.74!6.07!PBX1;;chr20:51588873..51588953,+!p1@TSHZ2!0.74!6.07!TSHZ2;;chr14:33408072..33408114,+!p2@NPAS3!0.74!5.46!NPAS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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13805.10180-103C9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13805.10180-103C9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13805.10180-103C9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pituitary%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13805.10180-103C9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pituitary%2520gland%2520-%2520adult%252c%2520donor10196.CNhs13805.10180-103C9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10180-103C9
 |is_a=EFO:0002091;;FF:0010162
 |is_obsolete=
+|library_id=CNhs13805
+|library_id_phase_based=2:CNhs13805
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10180
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10180
 |name=pituitary gland - adult, donor10196
 |namespace=FANTOM5
@@ Line 47: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=130.08975
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10180-103C9;search_select_hide=table117:FF:10180-103C9
 }}

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FF:10180-103C9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0