FF:10162-103A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005416 | ||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005416!sRNA-Seq@SAMD00005416 | |||
|HumanCAGEScanFiles=NCig10033;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008709;DRR009581;DRZ001006;DRZ002391;DRZ012356;DRZ013741 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057155;DRR062914;DRZ007990!sRNA-Seq;DRX037341;DRR041707;DRZ007349 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000007,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002530,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010162 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:87325728..87325739,-!p1@POU1F1!2.59!390.21!POU1F1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.44!272.97!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!2.13!332.16!ZNF483;;chr5:134369879..134369898,-!p2@PITX1!1.87!72.62!PITX1;;chr12:55413751..55413765,+!p1@NEUROD4!1.83!66.02!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!1.81!90.84!CSRNP3;;chr12:103351444..103351461,+!p1@ASCL1!1.74!53.73!ASCL1;;chr13:72441315..72441454,-!p1@DACH1!1.73!102.22!DACH1;;chr3:114477881..114477914,-!p17@ZBTB20!1.71!50.09!ZBTB20;;chr19:38085768..38085821,+!p1@ZNF540!1.67!66.93!ZNF540;;chr3:87325636..87325643,-!p2@POU1F1!1.65!43.26!POU1F1;;chr7:63505799..63505904,+!p1@ZNF727!1.63!42.12!ZNF727;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.52!HIF3A;;chr1:214161272..214161322,+!p1@PROX1!1.60!53.96!PROX1;;chr5:134369905..134369972,-!p1@PITX1!1.58!55.32!PITX1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.57!75.58!ZNF395;;chrX:24169518..24169522,+!p8@ZFX!1.51!31.65!ZFX;;chr8:53166899..53166914,-!p3@ST18!1.50!30.96!ST18;;chr17:53342311..53342400,+!p1@HLF!1.47!32.56!HLF;;chr20:20348740..20348757,+!p1@INSM1!1.46!27.77!INSM1;;chr3:114819124..114819200,-!p3@ZBTB20!1.45!61.92!ZBTB20;;chr2:2334997..2335053,-!p1@MYT1L!1.44!26.64!MYT1L;;chr14:61116183..61116208,-!p1@SIX1!1.42!93.80!SIX1;;chr14:60975883..60975911,+!p1@SIX6!1.41!24.59!SIX6;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.47!ZBTB16;;chr2:2328299..2328363,-!p3@MYT1L!1.39!23.68!MYT1L;;chr12:106976678..106976708,+!p2@RFX4!1.37!22.31!RFX4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.63!ZBED1;;chr6:152126790..152126828,+!p3@ESR1!1.34!20.72!ESR1;;chrX:101186981..101187030,-!p1@ZMAT1!1.31!62.83!ZMAT1;;chr1:151804244..151804310,-!p1@RORC!1.30!18.90!RORC;;chr1:165414325..165414369,-!p1@RXRG!1.30!18.90!RXRG;;chr5:178368186..178368238,+!p1@ZNF454!1.29!33.24!ZNF454;;chr9:77112244..77112262,+!p1@RORB!1.29!20.94!RORB;;chr8:40755333..40755352,-!p1@ZMAT4!1.29!18.44!ZMAT4;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.21!SOX2;;chr3:114173720..114173794,-!p6@ZBTB20!1.27!17.76!ZBTB20;;chr8:93107451..93107468,-!p2@RUNX1T1!1.26!17.30!RUNX1T1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.26!17.30!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.26!17.07!KCNIP3;;chr11:16629261..16629284,-!p1@SOX6!1.26!17.07!SOX6;;chr2:45168834..45168847,+!p2@SIX3!1.25!16.85!SIX3;;chr1:168250110..168250120,+!p2@TBX19!1.25!16.62!TBX19;;chr3:25469724..25469773,+!p1@RARB!1.24!23.45!RARB;;chr11:16629369..16629392,-!p5@SOX6!1.23!16.16!SOX6;;chr14:74256787..74256858,-!p6@C14orf43!1.23!16.16!C14orf43;;chr11:66188503..66188511,+!p1@NPAS4!1.20!15.03!NPAS4;;chr12:24102576..24102623,-!p2@SOX5!1.20!15.03!SOX5;;chr2:192015701..192015743,-!p1@STAT4!1.18!19.58!STAT4;;chr2:45168997..45169020,+!p4@SIX3!1.18!14.12!SIX3;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.17!76.72!ZNF10;;chr14:58797974..58798011,+!p3@ARID4A!1.17!13.89!ARID4A;;chr11:8040739..8040815,+!p4@TUB!1.16!13.43!TUB;;chr19:57352109..57352153,-!p2@ZIM2!1.15!12.98!ZIM2;;chr6:19837592..19837621,+!p1@ID4!1.14!78.09!ID4;;chr4:206390..206444,+!p1@ZNF876P!1.14!22.99!ZNF876P;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!20.94!ZBTB16;;chr9:3525867..3525902,-!p3@RFX3!1.13!43.03!RFX3;;chr1:8585945..8586056,-!p3@RERE!1.13!41.89!RERE;;chr3:187463179..187463201,-!p2@BCL6!1.12!50.54!BCL6;;chr4:149363494..149363543,-!p1@NR3C2!1.12!12.07!NR3C2;;chr3:114866084..114866118,-!p2@ZBTB20!1.11!43.71!ZBTB20;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.40!NR4A3;;chr4:111544219..111544240,-!p1@PITX2!1.11!11.84!PITX2;;chr1:42384343..42384380,-!p4@HIVEP3!1.10!11.61!HIVEP3;;chr14:60975858..60975869,+!p2@SIX6!1.10!11.61!SIX6;;chr6:126112074..126112144,+!p1@NCOA7!1.09!150.03!NCOA7;;chr18:22932080..22932170,-!p1@ZNF521!1.09!47.81!ZNF521;;chr19:46800289..46800327,+!p2@HIF3A!1.09!11.38!HIF3A;;chr4:81118647..81118666,+!p1@PRDM8!1.08!14.80!PRDM8;;chr3:141105705..141105770,+!p4@ZBTB38!1.08!13.43!ZBTB38;;chr16:67197654..67197716,+!p3@HSF4!1.08!11.16!HSF4;;chr12:106976656..106976672,+!p4@RFX4!1.08!11.16!RFX4;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.16!FOXG1;;chr19:54058073..54058088,+!p1@ZNF331!1.08!10.93!ZNF331;;chr3:138665937..138665968,-!p1@FOXL2!1.07!10.70!FOXL2;;chr3:114343768..114343822,-!p1@ZBTB20!1.05!45.76!ZBTB20;;chr20:45142154..45142227,-!p1@ZNF334!1.05!20.49!ZNF334;;chr21:39870339..39870443,-!p1@ERG!1.05!10.24!ERG;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.27!NFE2L2;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.68!TCF4;;chr9:139094988..139095012,-!p1@LHX3!1.04!10.02!LHX3;;chr3:114343039..114343085,-!p8@ZBTB20!1.04!10.02!ZBTB20;;chr15:77197655..77197716,-!p1@SCAPER!1.03!87.88!SCAPER;;chr9:3525968..3526016,-!p1@RFX3!1.03!57.14!RFX3;;chr1:61548069..61548102,+!p3@NFIA!1.03!24.13!NFIA;;chr3:24536253..24536328,-!p1@THRB!1.03!18.44!THRB;;chr12:106976774..106976788,+!p1@RFX4!1.03!9.79!RFX4;;chr12:52445218..52445237,+!p1@NR4A1!1.02!121.12!NR4A1;;chr14:21994449..21994524,-!p2@SALL2!1.02!28.46!SALL2;;chr3:107318157..107318172,+!p6@BBX!1.02!13.43!BBX;;chr12:12500308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| |expression_enrichment_score=chr3:87325728..87325739,-!p1@POU1F1!2.59!390.21!POU1F1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.44!272.97!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!2.13!332.16!ZNF483;;chr5:134369879..134369898,-!p2@PITX1!1.87!72.62!PITX1;;chr12:55413751..55413765,+!p1@NEUROD4!1.83!66.02!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!1.81!90.84!CSRNP3;;chr12:103351444..103351461,+!p1@ASCL1!1.74!53.73!ASCL1;;chr13:72441315..72441454,-!p1@DACH1!1.73!102.22!DACH1;;chr3:114477881..114477914,-!p17@ZBTB20!1.71!50.09!ZBTB20;;chr19:38085768..38085821,+!p1@ZNF540!1.67!66.93!ZNF540;;chr3:87325636..87325643,-!p2@POU1F1!1.65!43.26!POU1F1;;chr7:63505799..63505904,+!p1@ZNF727!1.63!42.12!ZNF727;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.52!HIF3A;;chr1:214161272..214161322,+!p1@PROX1!1.60!53.96!PROX1;;chr5:134369905..134369972,-!p1@PITX1!1.58!55.32!PITX1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.57!75.58!ZNF395;;chrX:24169518..24169522,+!p8@ZFX!1.51!31.65!ZFX;;chr8:53166899..53166914,-!p3@ST18!1.50!30.96!ST18;;chr17:53342311..53342400,+!p1@HLF!1.47!32.56!HLF;;chr20:20348740..20348757,+!p1@INSM1!1.46!27.77!INSM1;;chr3:114819124..114819200,-!p3@ZBTB20!1.45!61.92!ZBTB20;;chr2:2334997..2335053,-!p1@MYT1L!1.44!26.64!MYT1L;;chr14:61116183..61116208,-!p1@SIX1!1.42!93.80!SIX1;;chr14:60975883..60975911,+!p1@SIX6!1.41!24.59!SIX6;;chr11:113930425..113930471,+!p1@ZBTB16!1.39!33.47!ZBTB16;;chr2:2328299..2328363,-!p3@MYT1L!1.39!23.68!MYT1L;;chr12:106976678..106976708,+!p2@RFX4!1.37!22.31!RFX4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.35!21.63!ZBED1;;chr6:152126790..152126828,+!p3@ESR1!1.34!20.72!ESR1;;chrX:101186981..101187030,-!p1@ZMAT1!1.31!62.83!ZMAT1;;chr1:151804244..151804310,-!p1@RORC!1.30!18.90!RORC;;chr1:165414325..165414369,-!p1@RXRG!1.30!18.90!RXRG;;chr5:178368186..178368238,+!p1@ZNF454!1.29!33.24!ZNF454;;chr9:77112244..77112262,+!p1@RORB!1.29!20.94!RORB;;chr8:40755333..40755352,-!p1@ZMAT4!1.29!18.44!ZMAT4;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.21!SOX2;;chr3:114173720..114173794,-!p6@ZBTB20!1.27!17.76!ZBTB20;;chr8:93107451..93107468,-!p2@RUNX1T1!1.26!17.30!RUNX1T1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.26!17.30!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.26!17.07!KCNIP3;;chr11:16629261..16629284,-!p1@SOX6!1.26!17.07!SOX6;;chr2:45168834..45168847,+!p2@SIX3!1.25!16.85!SIX3;;chr1:168250110..168250120,+!p2@TBX19!1.25!16.62!TBX19;;chr3:25469724..25469773,+!p1@RARB!1.24!23.45!RARB;;chr11:16629369..16629392,-!p5@SOX6!1.23!16.16!SOX6;;chr14:74256787..74256858,-!p6@C14orf43!1.23!16.16!C14orf43;;chr11:66188503..66188511,+!p1@NPAS4!1.20!15.03!NPAS4;;chr12:24102576..24102623,-!p2@SOX5!1.20!15.03!SOX5;;chr2:192015701..192015743,-!p1@STAT4!1.18!19.58!STAT4;;chr2:45168997..45169020,+!p4@SIX3!1.18!14.12!SIX3;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!1.17!76.72!ZNF10;;chr14:58797974..58798011,+!p3@ARID4A!1.17!13.89!ARID4A;;chr11:8040739..8040815,+!p4@TUB!1.16!13.43!TUB;;chr19:57352109..57352153,-!p2@ZIM2!1.15!12.98!ZIM2;;chr6:19837592..19837621,+!p1@ID4!1.14!78.09!ID4;;chr4:206390..206444,+!p1@ZNF876P!1.14!22.99!ZNF876P;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!20.94!ZBTB16;;chr9:3525867..3525902,-!p3@RFX3!1.13!43.03!RFX3;;chr1:8585945..8586056,-!p3@RERE!1.13!41.89!RERE;;chr3:187463179..187463201,-!p2@BCL6!1.12!50.54!BCL6;;chr4:149363494..149363543,-!p1@NR3C2!1.12!12.07!NR3C2;;chr3:114866084..114866118,-!p2@ZBTB20!1.11!43.71!ZBTB20;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.40!NR4A3;;chr4:111544219..111544240,-!p1@PITX2!1.11!11.84!PITX2;;chr1:42384343..42384380,-!p4@HIVEP3!1.10!11.61!HIVEP3;;chr14:60975858..60975869,+!p2@SIX6!1.10!11.61!SIX6;;chr6:126112074..126112144,+!p1@NCOA7!1.09!150.03!NCOA7;;chr18:22932080..22932170,-!p1@ZNF521!1.09!47.81!ZNF521;;chr19:46800289..46800327,+!p2@HIF3A!1.09!11.38!HIF3A;;chr4:81118647..81118666,+!p1@PRDM8!1.08!14.80!PRDM8;;chr3:141105705..141105770,+!p4@ZBTB38!1.08!13.43!ZBTB38;;chr16:67197654..67197716,+!p3@HSF4!1.08!11.16!HSF4;;chr12:106976656..106976672,+!p4@RFX4!1.08!11.16!RFX4;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.16!FOXG1;;chr19:54058073..54058088,+!p1@ZNF331!1.08!10.93!ZNF331;;chr3:138665937..138665968,-!p1@FOXL2!1.07!10.70!FOXL2;;chr3:114343768..114343822,-!p1@ZBTB20!1.05!45.76!ZBTB20;;chr20:45142154..45142227,-!p1@ZNF334!1.05!20.49!ZNF334;;chr21:39870339..39870443,-!p1@ERG!1.05!10.24!ERG;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.27!NFE2L2;;chr18:52989031..52989079,-!p2@TCF4!1.04!23.68!TCF4;;chr9:139094988..139095012,-!p1@LHX3!1.04!10.02!LHX3;;chr3:114343039..114343085,-!p8@ZBTB20!1.04!10.02!ZBTB20;;chr15:77197655..77197716,-!p1@SCAPER!1.03!87.88!SCAPER;;chr9:3525968..3526016,-!p1@RFX3!1.03!57.14!RFX3;;chr1:61548069..61548102,+!p3@NFIA!1.03!24.13!NFIA;;chr3:24536253..24536328,-!p1@THRB!1.03!18.44!THRB;;chr12:106976774..106976788,+!p1@RFX4!1.03!9.79!RFX4;;chr12:52445218..52445237,+!p1@NR4A1!1.02!121.12!NR4A1;;chr14:21994449..21994524,-!p2@SALL2!1.02!28.46!SALL2;;chr3:107318157..107318172,+!p6@BBX!1.02!13.43!BBX;;chr12:125003087..125003141,-!p4@NCOR2!1.02!12.29!NCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.02!9.56!SPI1;;chr11:125034640..125034655,+!p1@PKNOX2!1.01!9.33!PKNOX2;;chr3:24206603..24206613,-!p17@THRB!1.01!9.33!THRB;;chr19:22193731..22193751,-!p1@ZNF208!1.01!9.33!ZNF208;;chr2:178128199..178128245,-!p3@NFE2L2!1.00!49.40!NFE2L2;;chr12:26277956..26277980,-!p1@BHLHE41!1.00!33.24!BHLHE41;;chr1:209979467..209979494,-!p1@IRF6!1.00!10.24!IRF6;;chr10:28034739..28034756,-!p1@MKX!1.00!9.11!MKX;;chr14:58798013..58798071,+!p2@ARID4A!1.00!9.11!ARID4A;;chr6:168333280..168333294,+!p9@MLLT4!1.00!9.11!MLLT4;;chr4:146859927..146860055,-!p1@ZNF827!0.99!54.87!ZNF827;;chr8:77593474..77593612,+!p1@ZFHX4!0.99!38.25!ZFHX4;;chr6:152011654..152011682,+!p1@ESR1!0.99!8.88!ESR1;;chr4:106068026..106068084,+!p1@TET2!0.98!79.91!TET2;;chr15:61521417..61521460,-!p2@RORA!0.98!19.58!RORA;;chr7:73038839..73038862,-!p1@MLXIPL!0.98!8.65!MLXIPL;;chr8:10588010..10588030,-!p1@SOX7!0.98!8.65!SOX7;;chr13:72441506..72441562,-!p3@DACH1!0.98!8.65!DACH1;;chr2:45236540..45236577,-!p1@SIX2!0.98!8.65!SIX2;;chr3:114477934..114477961,-!p14@ZBTB20!0.98!8.65!ZBTB20;;chr2:214016314..214016343,-!p2@IKZF2!0.97!14.34!IKZF2;;chr2:192015750..192015793,-!p2@STAT4!0.97!11.38!STAT4;;chr2:45168875..45168916,+!p1@SIX3!0.97!8.42!SIX3;;chr15:31658288..31658338,+!p4@KLF13!0.97!8.42!KLF13;;chr4:87928413..87928433,+!p3@AFF1!0.96!52.59!AFF1;;chr12:133707172..133707202,+!p2@ZNF10!0.96!19.12!ZNF10;;chr18:52989565..52989623,-!p9@TCF4!0.96!10.47!TCF4;;chr7:150974206..150974255,-!p1@SMARCD3!0.95!50.77!SMARCD3;;chr9:3525910..3525955,-!p4@RFX3!0.95!24.36!RFX3;;chr11:113930401..113930422,+!p3@ZBTB16!0.95!7.97!ZBTB16;;chr13:72441074..72441172,-!p2@DACH1!0.95!7.97!DACH1;;chr2:45169193..45169219,+!p3@SIX3!0.95!7.97!SIX3;;chr5:88178983..88179012,-!p1@MEF2C!0.94!61.47!MEF2C;;chr14:24020938..24020988,-!p1@ZFHX2!0.94!11.16!ZFHX2;;chr3:126076242..126076257,-!p1@KLF15!0.94!9.79!KLF15;;chr3:169381420..169381535,-!p1@MECOM!0.94!9.11!MECOM;;chr1:165414414..165414430,-!p3@RXRG!0.94!7.74!RXRG;;chr3:71179699..71179744,-!p2@FOXP1!0.93!58.28!FOXP1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.93!51.68!ZNF580;;chr5:43065197..43065244,+!p5@ZNF131!0.93!14.80!ZNF131;;chr3:42947600..42947680,+!p1@ZNF662!0.93!10.93!ZNF662;;chr12:26277817..26277863,-!p2@BHLHE41!0.93!10.24!BHLHE41;;chr12:24715376..24715432,-!p1@SOX5!0.93!9.56!SOX5;;chr11:31832658..31832681,-!p1@PAX6!0.93!7.51!PAX6;;chr19:54041669..54041697,+!p2@ZNF331!0.93!7.51!ZNF331;;chr4:124374..124410,+!p2@ZNF718!0.92!79.00!ZNF718;;chr10:35484804..35484902,+!p2@CREM!0.92!28.91!CREM;;chr3:40547564..40547616,+!p1@ZNF620!0.92!10.47!ZNF620;;chr19:44764031..44764072,+!p1@ZNF233!0.92!9.11!ZNF233;;chrX:101187036..101187056,-!p2@ZMAT1!0.92!7.97!ZMAT1;;chr22:41763452..41763466,+!p2@TEF!0.92!7.29!TEF;;chr2:2335109..2335134,-!p2@MYT1L!0.92!7.29!MYT1L;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.29!ZBTB20;;chr19:23578226..23578285,-!p1@ZNF91!0.91!126.12!ZNF91;;chr19:20748574..20748599,-!p1@ZNF737!0.91!44.39!ZNF737;;chr21:47063625..47063658,+!p1@PCBP3!0.91!32.10!PCBP3;;chr19:56988677..56988729,-!p1@ZNF667!0.91!12.98!ZNF667;;chr19:46801484..46801498,+!p9@HIF3A!0.91!7.06!HIF3A;;chr4:149363475..149363492,-!p2@NR3C2!0.91!7.06!NR3C2;;chr6:152126830..152126847,+!p4@ESR1!0.91!7.06!ESR1;;chr11:16133391..16133439,-!p6@SOX6!0.91!7.06!SOX6;;chr15:57025759..57025811,-!p2@ZNF280D!0.90!37.56!ZNF280D;;chr19:58220517..58220583,-!p1@ZNF154!0.90!22.77!ZNF154;;chr6:126102254..126102289,+!p5@NCOA7!0.90!19.81!NCOA7;;chrX:84498989..84499003,+!p1@ZNF711!0.90!9.79!ZNF711;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.74!SIX1;;chrX:147582254..147582320,+!p1@AFF2!0.89!6.83!AFF2;;chr1:165414382..165414394,-!p4@RXRG!0.89!6.83!RXRG;;chr1:216896752..216896778,-!p1@ESRRG!0.89!6.83!ESRRG;;chr19:21688387..21688432,+!p1@ZNF429!0.88!41.66!ZNF429;;chr1:61547894..61547968,+!p2@NFIA!0.88!20.03!NFIA;;chr1:164528297..164528309,+!p9@PBX1!0.88!8.65!PBX1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.88!6.60!ZSCAN1;;chr2:2335070..2335098,-!p4@MYT1L!0.88!6.60!MYT1L;;chr11:16627614..16627651,-!p4@SOX6!0.88!6.60!SOX6;;chrX:147582130..147582147,+!p3@AFF2!0.88!6.60!AFF2;;chr13:45151403..45151433,-!p5@TSC22D1!0.87!14.57!TSC22D1;;chr3:126076264..126076305,-!p2@KLF15!0.87!9.11!KLF15;;chr5:88179518..88179569,-!p5@MEF2C!0.87!8.65!MEF2C;;chr18:6414884..6414942,-!p1@L3MBTL4!0.87!8.20!L3MBTL4;;chr17:80797886..80797906,-!p1@ZNF750!0.87!6.37!ZNF750;;chr18:55102628..55102646,+!p2@ONECUT2!0.87!6.37!ONECUT2;;chr11:125034586..125034604,+!p3@PKNOX2!0.87!6.37!PKNOX2;;chr1:165414227..165414242,-!p2@RXRG!0.87!6.37!RXRG;;chr1:61542891..61542920,+!p12@NFIA!0.87!6.37!NFIA;;chr2:45168959..45168990,+!p6@SIX3!0.87!6.37!SIX3;;chr3:24206934..24206942,-!p24@THRB!0.87!6.37!THRB;;chr5:88179017..88179046,-!p2@MEF2C!0.86!26.41!MEF2C;;chr17:7492684..7492778,-!p2@SOX15!0.86!13.66!SOX15;;chrX:84499081..84499115,+!p2@ZNF711!0.86!9.33!ZNF711;;chr19:37464063..37464127,+!p2@ZNF568!0.86!8.42!ZNF568;;chr3:141868293..141868355,-!p2@TFDP2!0.85!56.92!TFDP2;;chr19:9434841..9434886,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10162-103A9 | |id=FF:10162-103A9 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0010162 | |is_a=EFO:0002091;;FF:0000002;;FF:0010162 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12229 | |||
|library_id_phase_based=2:CNhs12229 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10162 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.ACTTGA.10162 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10162 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.ACTTGA.10162 | |||
|name=pituitary gland, adult, donor10252 | |name=pituitary gland, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 66: | ||
|profile_cagescan=NCig10033,,, | |profile_cagescan=NCig10033,,, | ||
|profile_hcage=CNhs12229,LSID852,release009,COMPLETED | |profile_hcage=CNhs12229,LSID852,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 83: | ||
|rna_tube_id=103A9 | |rna_tube_id=103A9 | ||
|rna_weight_ug=94.7775 | |rna_weight_ug=94.7775 | ||
|rnaseq_library_id=RDhi10098!SRhi10007.ACTTGA | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 107: | ||
|top_motifs=RFX1:4.19776464054;RFX2..5_RFXANK_RFXAP:3.5258729533;LHX3,4:3.44218604781;ATF2:2.48305908955;NRF1:2.42412860908;ALX1:2.36819892382;ADNP_IRX_SIX_ZHX:2.31016720269;POU6F1:2.30774181909;AR:2.26839030252;FOXN1:2.23053685045;EP300:2.08648735129;MYFfamily:2.03147426236;FOXA2:1.94342339771;CREB1:1.85885506737;BPTF:1.8250787278;SNAI1..3:1.81789748263;TGIF1:1.81089332277;MYOD1:1.7878814861;ZFP161:1.78374134683;RREB1:1.72484481075;SREBF1,2:1.7086591407;REST:1.69178027124;ZEB1:1.67449019795;AHR_ARNT_ARNT2:1.6452377327;NANOG:1.61597593622;STAT1,3:1.6081738014;NKX6-1,2:1.59141924462;MED-1{core}:1.58179065344;PATZ1:1.55766681603;NHLH1,2:1.54901915592;SP1:1.44912535686;EGR1..3:1.42286518983;PRRX1,2:1.40937139936;FOX{D1,D2}:1.36775213186;LMO2:1.36370650337;FOXP3:1.3283983904;TLX2:1.32415432106;GTF2I:1.30320250205;ZNF143:1.28074466542;ARID5B:1.26322847772;HIC1:1.25489641257;POU1F1:1.24864706749;ATF6:1.23352079877;CUX2:1.19741444941;PRDM1:1.18091855401;MAZ:1.16289940147;MAFB:1.14494457474;AIRE:1.13994408967;NKX2-3_NKX2-5:1.13684645163;PAX1,9:1.13146715588;TFAP2B:1.07799087232;ELK1,4_GABP{A,B1}:1.07075663217;ONECUT1,2:1.05849601425;CDC5L:1.05688915802;JUN:1.01294047918;NR3C1:1.01198833099;TEF:0.992872871975;GFI1B:0.986067786944;FOX{F1,F2,J1}:0.980424336691;DBP:0.977188011038;HMGA1,2:0.975671419662;FOXP1:0.951525350753;STAT2,4,6:0.938822928613;ATF4:0.898195236811;PAX5:0.888294013416;MTE{core}:0.887558223208;NFIX:0.886968442856;HOXA9_MEIS1:0.874400046243;GFI1:0.866600191378;HAND1,2:0.826701646213;MTF1:0.804527440358;CRX:0.801139345105;ATF5_CREB3:0.782812812148;NFIL3:0.776344853776;RBPJ:0.7671449542;HOX{A6,A7,B6,B7}:0.761746008217;IRF7:0.754847916541;MZF1:0.754789512619;TBX4,5:0.742297123444;HMX1:0.73791196237;FOXM1:0.723479530846;YY1:0.721969231518;PAX4:0.702462851869;PAX6:0.65626357528;BREu{core}:0.612104826478;FOXO1,3,4:0.593223109453;RORA:0.55150987268;GCM1,2:0.544755470338;SPZ1:0.497139265905;GATA4:0.462966108142;OCT4_SOX2{dimer}:0.45147888455;TOPORS:0.448202725741;ZBTB6:0.427439610897;NKX3-2:0.425626007747;SOX5:0.401049471521;LEF1_TCF7_TCF7L1,2:0.393049097562;MEF2{A,B,C,D}:0.363635396918;HOX{A4,D4}:0.356867019237;PITX1..3:0.354910184522;SOX2:0.326368282286;HIF1A:0.326048965088;KLF4:0.325218167555;ESRRA:0.296115052754;PDX1:0.282460415837;SMAD1..7,9:0.272044939565;SOX17:0.26990572057;EBF1:0.246986415676;NFY{A,B,C}:0.228405945952;XBP1:0.19771960532;FOX{I1,J2}:0.19287405977;PBX1:0.185779140846;SOX{8,9,10}:0.174030285654;EVI1:0.1308153706;GATA6:0.095960534246;ZBTB16:0.0825689927034;PAX3,7:0.050387054947;XCPE1{core}:0.0469331354433;MYBL2:0.00772277412966;HSF1,2:0.00472387335429;VSX1,2:-0.0112809498212;PAX2:-0.0198590512451;IRF1,2:-0.0254755794902;ZIC1..3:-0.0400853743097;SPIB:-0.0937819243843;ELF1,2,4:-0.101359289924;CEBPA,B_DDIT3:-0.118598521573;NKX3-1:-0.142374508188;POU5F1:-0.17120523534;TLX1..3_NFIC{dimer}:-0.190958817436;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.191944236217;FOXD3:-0.201880791747;NR1H4:-0.216082958012;TBP:-0.216287575132;NKX2-1,4:-0.217383837208;NANOG{mouse}:-0.257351614542;FOXQ1:-0.307100917248;ZNF384:-0.30774256788;TFAP4:-0.319392138356;POU3F1..4:-0.323509121772;TEAD1:-0.350071495581;NFATC1..3:-0.366733131372;ZNF423:-0.376489850691;IKZF2:-0.399065131378;TP53:-0.414458283865;SPI1:-0.425795873855;ETS1,2:-0.434480652156;NFE2:-0.452295117574;FOSL2:-0.465380323363;HNF1A:-0.468678388102;HBP1_HMGB_SSRP1_UBTF:-0.473180220019;TFAP2{A,C}:-0.491778746716;GTF2A1,2:-0.495929833049;NFE2L1:-0.530422117989;TFDP1:-0.553565248168;DMAP1_NCOR{1,2}_SMARC:-0.578930671012;ZNF238:-0.581511876962;HLF:-0.590071247452;STAT5{A,B}:-0.59416079484;TFCP2:-0.599017872167;RXRA_VDR{dimer}:-0.634842694747;FOXL1:-0.644709697158;TAL1_TCF{3,4,12}:-0.663167349707;FOS_FOS{B,L1}_JUN{B,D}:-0.688440449516;MYB:-0.698047289723;CDX1,2,4:-0.717912589792;NFE2L2:-0.719668342828;BACH2:-0.757257749415;NFKB1_REL_RELA:-0.757452904877;NR5A1,2:-0.789718750366;GZF1:-0.810458688848;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.818546242106;HNF4A_NR2F1,2:-0.882048884641;GLI1..3:-0.893559889223;IKZF1:-0.927640604146;T:-0.940091583921;bHLH_family:-0.962538793259;RUNX1..3:-0.981256120193;E2F1..5:-1.03006717232;POU2F1..3:-1.05733605719;PAX8:-1.06775628883;ALX4:-1.11365099795;UFEwm:-1.14507201328;PPARG:-1.31722164101;NR6A1:-1.36910131333;HOX{A5,B5}:-1.39263024146;ESR1:-1.43423291323;SRF:-1.48417953779;RXR{A,B,G}:-1.74176365674;EN1,2:-1.74543092557;ZNF148:-1.80789673924;NKX2-2,8:-2.23799471148;HES1:-2.58476028233 | |top_motifs=RFX1:4.19776464054;RFX2..5_RFXANK_RFXAP:3.5258729533;LHX3,4:3.44218604781;ATF2:2.48305908955;NRF1:2.42412860908;ALX1:2.36819892382;ADNP_IRX_SIX_ZHX:2.31016720269;POU6F1:2.30774181909;AR:2.26839030252;FOXN1:2.23053685045;EP300:2.08648735129;MYFfamily:2.03147426236;FOXA2:1.94342339771;CREB1:1.85885506737;BPTF:1.8250787278;SNAI1..3:1.81789748263;TGIF1:1.81089332277;MYOD1:1.7878814861;ZFP161:1.78374134683;RREB1:1.72484481075;SREBF1,2:1.7086591407;REST:1.69178027124;ZEB1:1.67449019795;AHR_ARNT_ARNT2:1.6452377327;NANOG:1.61597593622;STAT1,3:1.6081738014;NKX6-1,2:1.59141924462;MED-1{core}:1.58179065344;PATZ1:1.55766681603;NHLH1,2:1.54901915592;SP1:1.44912535686;EGR1..3:1.42286518983;PRRX1,2:1.40937139936;FOX{D1,D2}:1.36775213186;LMO2:1.36370650337;FOXP3:1.3283983904;TLX2:1.32415432106;GTF2I:1.30320250205;ZNF143:1.28074466542;ARID5B:1.26322847772;HIC1:1.25489641257;POU1F1:1.24864706749;ATF6:1.23352079877;CUX2:1.19741444941;PRDM1:1.18091855401;MAZ:1.16289940147;MAFB:1.14494457474;AIRE:1.13994408967;NKX2-3_NKX2-5:1.13684645163;PAX1,9:1.13146715588;TFAP2B:1.07799087232;ELK1,4_GABP{A,B1}:1.07075663217;ONECUT1,2:1.05849601425;CDC5L:1.05688915802;JUN:1.01294047918;NR3C1:1.01198833099;TEF:0.992872871975;GFI1B:0.986067786944;FOX{F1,F2,J1}:0.980424336691;DBP:0.977188011038;HMGA1,2:0.975671419662;FOXP1:0.951525350753;STAT2,4,6:0.938822928613;ATF4:0.898195236811;PAX5:0.888294013416;MTE{core}:0.887558223208;NFIX:0.886968442856;HOXA9_MEIS1:0.874400046243;GFI1:0.866600191378;HAND1,2:0.826701646213;MTF1:0.804527440358;CRX:0.801139345105;ATF5_CREB3:0.782812812148;NFIL3:0.776344853776;RBPJ:0.7671449542;HOX{A6,A7,B6,B7}:0.761746008217;IRF7:0.754847916541;MZF1:0.754789512619;TBX4,5:0.742297123444;HMX1:0.73791196237;FOXM1:0.723479530846;YY1:0.721969231518;PAX4:0.702462851869;PAX6:0.65626357528;BREu{core}:0.612104826478;FOXO1,3,4:0.593223109453;RORA:0.55150987268;GCM1,2:0.544755470338;SPZ1:0.497139265905;GATA4:0.462966108142;OCT4_SOX2{dimer}:0.45147888455;TOPORS:0.448202725741;ZBTB6:0.427439610897;NKX3-2:0.425626007747;SOX5:0.401049471521;LEF1_TCF7_TCF7L1,2:0.393049097562;MEF2{A,B,C,D}:0.363635396918;HOX{A4,D4}:0.356867019237;PITX1..3:0.354910184522;SOX2:0.326368282286;HIF1A:0.326048965088;KLF4:0.325218167555;ESRRA:0.296115052754;PDX1:0.282460415837;SMAD1..7,9:0.272044939565;SOX17:0.26990572057;EBF1:0.246986415676;NFY{A,B,C}:0.228405945952;XBP1:0.19771960532;FOX{I1,J2}:0.19287405977;PBX1:0.185779140846;SOX{8,9,10}:0.174030285654;EVI1:0.1308153706;GATA6:0.095960534246;ZBTB16:0.0825689927034;PAX3,7:0.050387054947;XCPE1{core}:0.0469331354433;MYBL2:0.00772277412966;HSF1,2:0.00472387335429;VSX1,2:-0.0112809498212;PAX2:-0.0198590512451;IRF1,2:-0.0254755794902;ZIC1..3:-0.0400853743097;SPIB:-0.0937819243843;ELF1,2,4:-0.101359289924;CEBPA,B_DDIT3:-0.118598521573;NKX3-1:-0.142374508188;POU5F1:-0.17120523534;TLX1..3_NFIC{dimer}:-0.190958817436;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.191944236217;FOXD3:-0.201880791747;NR1H4:-0.216082958012;TBP:-0.216287575132;NKX2-1,4:-0.217383837208;NANOG{mouse}:-0.257351614542;FOXQ1:-0.307100917248;ZNF384:-0.30774256788;TFAP4:-0.319392138356;POU3F1..4:-0.323509121772;TEAD1:-0.350071495581;NFATC1..3:-0.366733131372;ZNF423:-0.376489850691;IKZF2:-0.399065131378;TP53:-0.414458283865;SPI1:-0.425795873855;ETS1,2:-0.434480652156;NFE2:-0.452295117574;FOSL2:-0.465380323363;HNF1A:-0.468678388102;HBP1_HMGB_SSRP1_UBTF:-0.473180220019;TFAP2{A,C}:-0.491778746716;GTF2A1,2:-0.495929833049;NFE2L1:-0.530422117989;TFDP1:-0.553565248168;DMAP1_NCOR{1,2}_SMARC:-0.578930671012;ZNF238:-0.581511876962;HLF:-0.590071247452;STAT5{A,B}:-0.59416079484;TFCP2:-0.599017872167;RXRA_VDR{dimer}:-0.634842694747;FOXL1:-0.644709697158;TAL1_TCF{3,4,12}:-0.663167349707;FOS_FOS{B,L1}_JUN{B,D}:-0.688440449516;MYB:-0.698047289723;CDX1,2,4:-0.717912589792;NFE2L2:-0.719668342828;BACH2:-0.757257749415;NFKB1_REL_RELA:-0.757452904877;NR5A1,2:-0.789718750366;GZF1:-0.810458688848;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.818546242106;HNF4A_NR2F1,2:-0.882048884641;GLI1..3:-0.893559889223;IKZF1:-0.927640604146;T:-0.940091583921;bHLH_family:-0.962538793259;RUNX1..3:-0.981256120193;E2F1..5:-1.03006717232;POU2F1..3:-1.05733605719;PAX8:-1.06775628883;ALX4:-1.11365099795;UFEwm:-1.14507201328;PPARG:-1.31722164101;NR6A1:-1.36910131333;HOX{A5,B5}:-1.39263024146;ESR1:-1.43423291323;SRF:-1.48417953779;RXR{A,B,G}:-1.74176365674;EN1,2:-1.74543092557;ZNF148:-1.80789673924;NKX2-2,8:-2.23799471148;HES1:-2.58476028233 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10162-103A9;search_select_hide=table117:FF:10162-103A9 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | pituitary gland, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12229 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12229
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12229
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.064 |
| 10 | 10 | 0.0594 |
| 100 | 100 | 0.413 |
| 101 | 101 | 0.685 |
| 102 | 102 | 0.917 |
| 103 | 103 | 0.102 |
| 104 | 104 | 0.207 |
| 105 | 105 | 0.807 |
| 106 | 106 | 0.00122 |
| 107 | 107 | 0.01 |
| 108 | 108 | 0.393 |
| 109 | 109 | 0.0148 |
| 11 | 11 | 0.0187 |
| 110 | 110 | 0.0967 |
| 111 | 111 | 0.0664 |
| 112 | 112 | 0.487 |
| 113 | 113 | 0.625 |
| 114 | 114 | 0.0757 |
| 115 | 115 | 0.642 |
| 116 | 116 | 0.0675 |
| 117 | 117 | 0.0675 |
| 118 | 118 | 0.296 |
| 119 | 119 | 0.0608 |
| 12 | 12 | 0.992 |
| 120 | 120 | 0.138 |
| 121 | 121 | 0.806 |
| 122 | 122 | 0.605 |
| 123 | 123 | 0.771 |
| 124 | 124 | 0.704 |
| 125 | 125 | 0.0583 |
| 126 | 126 | 0.25 |
| 127 | 127 | 0.322 |
| 128 | 128 | 0.0305 |
| 129 | 129 | 0.242 |
| 13 | 13 | 0.016 |
| 130 | 130 | 0.34 |
| 131 | 131 | 0.413 |
| 132 | 132 | 0.888 |
| 133 | 133 | 0.277 |
| 134 | 134 | 0.559 |
| 135 | 135 | 0.278 |
| 136 | 136 | 0.174 |
| 137 | 137 | 0.156 |
| 138 | 138 | 0.735 |
| 139 | 139 | 0.299 |
| 14 | 14 | 0.925 |
| 140 | 140 | 0.694 |
| 141 | 141 | 0.738 |
| 142 | 142 | 0.294 |
| 143 | 143 | 0.0322 |
| 144 | 144 | 0.426 |
| 145 | 145 | 0.0874 |
| 146 | 146 | 0.451 |
| 147 | 147 | 0.654 |
| 148 | 148 | 0.0054 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.116 |
| 150 | 150 | 0.19 |
| 151 | 151 | 0.508 |
| 152 | 152 | 0.0575 |
| 153 | 153 | 0.873 |
| 154 | 154 | 0.891 |
| 155 | 155 | 0.983 |
| 156 | 156 | 0.77 |
| 157 | 157 | 0.452 |
| 158 | 158 | 0.0923 |
| 159 | 159 | 0.0153 |
| 16 | 16 | 0.108 |
| 160 | 160 | 0.0522 |
| 161 | 161 | 0.337 |
| 162 | 162 | 0.899 |
| 163 | 163 | 0.753 |
| 164 | 164 | 0.145 |
| 165 | 165 | 0.245 |
| 166 | 166 | 0.964 |
| 167 | 167 | 0.911 |
| 168 | 168 | 0.122 |
| 169 | 169 | 0.00743 |
| 17 | 17 | 0.0467 |
| 18 | 18 | 0.0693 |
| 19 | 19 | 0.144 |
| 2 | 2 | 0.68 |
| 20 | 20 | 0.652 |
| 21 | 21 | 0.0816 |
| 22 | 22 | 0.148 |
| 23 | 23 | 0.0834 |
| 24 | 24 | 0.212 |
| 25 | 25 | 0.733 |
| 26 | 26 | 0.00383 |
| 27 | 27 | 0.459 |
| 28 | 28 | 0.793 |
| 29 | 29 | 0.0341 |
| 3 | 3 | 0.113 |
| 30 | 30 | 0.836 |
| 31 | 31 | 0.769 |
| 32 | 32 | 0.00886 |
| 33 | 33 | 0.156 |
| 34 | 34 | 0.496 |
| 35 | 35 | 0.395 |
| 36 | 36 | 0.0943 |
| 37 | 37 | 0.0639 |
| 38 | 38 | 0.194 |
| 39 | 39 | 0.188 |
| 4 | 4 | 0.758 |
| 40 | 40 | 0.065 |
| 41 | 41 | 0.192 |
| 42 | 42 | 0.381 |
| 43 | 43 | 0.102 |
| 44 | 44 | 0.0407 |
| 45 | 45 | 0.659 |
| 46 | 46 | 0.0424 |
| 47 | 47 | 0.0997 |
| 48 | 48 | 0.0951 |
| 49 | 49 | 0.147 |
| 5 | 5 | 0.372 |
| 50 | 50 | 0.332 |
| 51 | 51 | 0.285 |
| 52 | 52 | 0.194 |
| 53 | 53 | 0.94 |
| 54 | 54 | 0.33 |
| 55 | 55 | 0.651 |
| 56 | 56 | 0.558 |
| 57 | 57 | 0.203 |
| 58 | 58 | 0.507 |
| 59 | 59 | 0.0309 |
| 6 | 6 | 0.587 |
| 60 | 60 | 0.0301 |
| 61 | 61 | 0.166 |
| 62 | 62 | 0.176 |
| 63 | 63 | 0.0574 |
| 64 | 64 | 0.187 |
| 65 | 65 | 0.081 |
| 66 | 66 | 0.362 |
| 67 | 67 | 0.309 |
| 68 | 68 | 0.945 |
| 69 | 69 | 0.216 |
| 7 | 7 | 0.172 |
| 70 | 70 | 0.0365 |
| 71 | 71 | 0.0271 |
| 72 | 72 | 0.767 |
| 73 | 73 | 0.0621 |
| 74 | 74 | 0.282 |
| 75 | 75 | 0.0733 |
| 76 | 76 | 0.601 |
| 77 | 77 | 0.118 |
| 78 | 78 | 0.0212 |
| 79 | 79 | 0.374 |
| 8 | 8 | 0.0321 |
| 80 | 80 | 0.862 |
| 81 | 81 | 0.254 |
| 82 | 82 | 0.258 |
| 83 | 83 | 0.152 |
| 84 | 84 | 0.496 |
| 85 | 85 | 0.0474 |
| 86 | 86 | 0.305 |
| 87 | 87 | 0.00305 |
| 88 | 88 | 0.667 |
| 89 | 89 | 0.254 |
| 9 | 9 | 0.328 |
| 90 | 90 | 0.0906 |
| 91 | 91 | 0.523 |
| 92 | 92 | 0.447 |
| 93 | 93 | 0.792 |
| 94 | 94 | 0.114 |
| 95 | 95 | 0.0576 |
| 96 | 96 | 0.459 |
| 97 | 97 | 0.884 |
| 98 | 98 | 0.261 |
| 99 | 99 | 0.289 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12229
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010162 human pituitary gland - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000007 (pituitary gland)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010162 (human pituitary gland - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
