FF:10160-103A7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005634 | ||
|ancestors_in_cell_lineage_facet= | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005634!sRNA-Seq@SAMD00005634 | ||
|HumanCAGEScanFiles=NCig10031;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pineal%2520gland%252c%2520adult%252c%2520donor10252.NCig10031.10160-103A7.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008707;DRR009579;DRZ001004;DRZ002389;DRZ012354;DRZ013739 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057154;DRR062913;DRZ007989!sRNA-Seq;DRX037340;DRR041706;DRZ007348 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001905,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002784,UBERON:0002757,UBERON:0010134,UBERON:0002530,UBERON:0010317,UBERON:0005408,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949,UBERON:0001899 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010160 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.43!2711.79!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.06!1147.74!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.84!684.34!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.75!567.65!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.74!544.11!NEUROG1;;chr9:77112244..77112262,+!p1@RORB!2.46!322.16!RORB;;chr2:182545234..182545252,-!p1@NEUROD1!2.32!209.50!NEUROD1;;chr12:54779511..54779577,-!p5@ZNF385A!2.29!192.35!ZNF385A;;chr13:72441315..72441454,-!p1@DACH1!2.27!355.12!DACH1;;chr1:216896752..216896778,-!p1@ESRRG!2.27!186.30!ESRRG;;chr11:122852529..122852549,-!p1@BSX!2.21!162.43!BSX;;chr3:52002194..52002250,-!p5@PCBP4!2.21!160.07!PCBP4;;chr12:55413721..55413728,+!p3@NEUROD4!2.08!119.72!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!2.07!168.48!CSRNP3;;chr1:157069495..157069541,-!p2@ETV3L!2.06!115.01!ETV3L;;chr12:55413694..55413703,+!p2@NEUROD4!2.05!109.96!NEUROD4;;chr8:53162037..53162058,-!p5@ST18!1.99!96.51!ST18;;chr14:57272369..57272391,-!p2@OTX2!1.98!95.17!OTX2;;chr1:157069619..157069633,-!p3@ETV3L!1.96!90.12!ETV3L;;chr5:124084493..124084524,-!p2@ZNF608!1.95!188.66!ZNF608;;chr1:10754477..10754517,-!p1@CASZ1!1.87!118.37!CASZ1;;chr19:3772220..3772236,-!p1@RAX2!1.87!72.97!RAX2;;chr1:165414325..165414369,-!p1@RXRG!1.87!72.30!RXRG;;chr14:57277098..57277116,-!p3@OTX2!1.77!58.51!OTX2;;chr7:63505799..63505904,+!p1@ZNF727!1.76!56.50!ZNF727;;chr9:114287433..114287513,+!p1@ZNF483!1.74!135.19!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.71!56.83!HLF;;chr20:62795951..62795965,+!p3@MYT1!1.71!49.77!MYT1;;chr9:139094988..139095012,-!p1@LHX3!1.71!49.77!LHX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!159.06!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!44.05!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.64!57.50!BHLHE41;;chr8:135522475..135522486,-!p16@ZFAT!1.64!43.04!ZFAT;;chr8:53166899..53166914,-!p3@ST18!1.64!43.04!ST18;;chr2:223163706..223163730,-!p1@PAX3!1.62!41.03!PAX3;;chr15:76629123..76629151,+!p1@ISL2!1.60!42.71!ISL2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.60!39.01!ZNF676;;chr7:149470641..149470694,-!p1@ZNF467!1.58!159.73!ZNF467;;chr1:40105299..40105326,-!p1@HEYL!1.58!36.99!HEYL;;chr13:72441506..72441562,-!p3@DACH1!1.58!36.65!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.79!ZNF540;;chr1:157069555..157069569,-!p4@ETV3L!1.52!31.95!ETV3L;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.33!SOX5;;chr1:216896780..216896800,-!p2@ESRRG!1.49!29.93!ESRRG;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.05!ZNF385A;;chr16:51185318..51185348,-!p2@SALL1!1.48!29.26!SALL1;;chr1:8877692..8877732,-!p1@RERE!1.46!214.89!RERE;;chr14:58797974..58798011,+!p3@ARID4A!1.46!27.91!ARID4A;;chr16:51185489..51185501,-!p6@SALL1!1.45!27.24!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.45!27.24!SALL1;;chr19:22193731..22193751,-!p1@ZNF208!1.44!26.23!ZNF208;;chr14:57277163..57277168,-!p4@OTX2!1.44!26.23!OTX2;;chr11:122852557..122852570,-!p2@BSX!1.42!25.56!BSX;;chr1:180199393..180199426,+!p1@LHX4!1.42!25.56!LHX4;;chr16:51185172..51185197,-!p1@SALL1!1.42!25.56!SALL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.40!50.11!ZNF395;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.21!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.40!23.88!ZIC1;;chr1:61548069..61548102,+!p3@NFIA!1.39!56.50!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.39!53.47!ZBTB20;;chr5:134871183..134871197,-!p3@NEUROG1!1.39!23.54!NEUROG1;;chr3:52001448..52001478,-!p2@PCBP4!1.38!310.05!PCBP4;;chr21:47063625..47063658,+!p1@PCBP3!1.38!97.86!PCBP3;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.09!SOX15;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.53!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.36!21.86!KCNIP3;;chr1:10856639..10856662,-!p2@CASZ1!1.36!21.86!CASZ1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!158.73!MEF2C;;chr17:38465441..38465481,+!p6@RARA!1.34!25.56!RARA;;chr15:60884706..60884743,-!p1@RORA!1.33!103.91!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.51!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.32!19.84!TSC22D4;;chr7:73038839..73038862,-!p1@MLXIPL!1.32!19.84!MLXIPL;;chr3:114173720..114173794,-!p6@ZBTB20!1.32!19.84!ZBTB20;;chr9:77112225..77112238,+!p2@RORB!1.31!19.50!RORB;;chr9:109625401..109625458,+!p1@ZNF462!1.30!49.43!ZNF462;;chr5:124081008..124081016,-!p28@ZNF608!1.30!19.17!ZNF608;;chr3:181429704..181429722,+!p1@SOX2!1.30!18.83!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.50!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.28!138.21!NR1D1;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.16!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!1.28!18.16!RXRG;;chr1:244219775..244219893,+!p2@ZNF238!1.27!24.21!ZNF238;;chr22:41763452..41763466,+!p2@TEF!1.27!17.82!TEF;;chr1:217262933..217262968,-!p3@ESRRG!1.27!17.49!ESRRG;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.15!OLIG1;;chr14:73360799..73360817,-!p1@DPF3!1.25!57.17!DPF3;;chr14:21994337..21994442,-!p1@SALL2!1.25!46.07!SALL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.25!16.81!NEUROD1;;chr5:124084466..124084484,-!p6@ZNF608!1.25!16.81!ZNF608;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.55!GATA2;;chr3:18466787..18466839,-!p1@SATB1!1.23!69.95!SATB1;;chr1:61547894..61547968,+!p2@NFIA!1.23!46.41!NFIA;;chr15:61521417..61521460,-!p2@RORA!1.23!35.31!RORA;;chr7:74072135..74072171,+!p2@GTF2I!1.22!48.09!GTF2I;;chr8:93107451..93107468,-!p2@RUNX1T1!1.22!15.47!RUNX1T1;;chr5:88179017..88179046,-!p2@MEF2C!1.21!60.53!MEF2C;;chr2:145277882..145277967,-!p3@ZEB2!1.21!25.89!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.20!36.65!CREM;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.80!HIF3A;;chr1:61548225..61548299,+!p1@NFIA!1.19!184.96!NFIA;;chr2:214016314..214016343,-!p2@IKZF2!1.19!24.21!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.19!20.51!BHLHE41;;chr3:114173859..114173873,-!p15@ZBTB20!1.19!14.46!ZBTB20;;chr17:36861496..36861586,+!p1@MLLT6!1.17!133.50!MLLT6;;chr14:21994449..21994524,-!p2@SALL2!1.17!41.36!SALL2;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr16:51185544..51185555,-!p7@SALL1!1.17!13.79!SALL1;;chr15:61521462..61521482,-!p4@RORA!1.16!13.45!RORA;;chr8:53162019..53162028,-!p12@ST18!1.16!13.45!ST18;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.45!CASZ1;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.45!ZIC1;;chr10:111987079..111987115,+!p3@MXI1!1.15!18.16!MXI1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.80!ZNF385A;;chr20:62796052..62796067,+!p5@MYT1!1.15!13.12!MYT1;;chr9:139096968..139096979,-!p2@LHX3!1.15!13.12!LHX3;;chr6:15246200..15246214,+!p2@JARID2!1.14!34.97!JARID2;;chr2:16080659..16080685,+!p1@MYCN!1.14!12.78!MYCN;;chr16:51185511..51185522,-!p9@SALL1!1.14!12.78!SALL1;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.78!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.71!RFX3;;chr15:57511609..57511651,+!p2@TCF12!1.13!20.85!TCF12;;chr11:8040739..8040815,+!p4@TUB!1.13!12.44!TUB;;chr12:106976678..106976708,+!p2@RFX4!1.13!12.44!RFX4;;chr3:114477934..114477961,-!p14@ZBTB20!1.13!12.44!ZBTB20;;chr9:139095030..139095040,-!p4@LHX3!1.13!12.44!LHX3;;chr2:178128250..178128293,-!p6@NFE2L2!1.12!30.60!NFE2L2;;chr20:45142154..45142227,-!p1@ZNF334!1.12!24.55!ZNF334;;chr19:37998036..37998098,+!p2@ZNF793!1.12!15.13!ZNF793;;chr14:21562671..21562702,-!p8@ZNF219!1.12!12.11!ZNF219;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.44!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!1.11!29.93!TET3;;chr5:178368186..178368238,+!p1@ZNF454!1.11!21.52!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!1.09!17.15!ZNF540;;chr15:61521495..61521506,-!p5@RORA!1.08!11.10!RORA;;chr7:39125511..39125560,+!p1@POU6F2!1.08!11.10!POU6F2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.10!SOX5;;chr19:40562072..40562143,-!p1@ZNF780B!1.07!98.19!ZNF780B;;chr9:3525968..3526016,-!p1@RFX3!1.07!62.89!RFX3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.46!ARNT2;;chr1:61548118..61548129,+!p9@NFIA!1.07!12.11!NFIA;;chr3:114819101..114819121,-!p7@ZBTB20!1.07!10.76!ZBTB20;;chr3:52001426..52001447,-!p3@PCBP4!1.06!29.59!PCBP4;;chr19:52391147..52391218,-!p1@ZNF577!1.05!32.28!ZNF577;;chr9:2015275..2015287,+!p8@SMARCA2!1.05!16.48!SMARCA2;;chr7:74072175..74072188,+!p6@GTF2I!1.05!14.12!GTF2I;;chrX:101186981..101187030,-!p1@ZMAT1!1.04!33.29!ZMAT1;;chr11:63684602..63684664,-!p1@RCOR2!1.04!19.84!RCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.04!10.09!SPI1;;chr14:21562648..21562658,-!p22@ZNF219!1.04!10.09!ZNF219;;chr16:51185149..51185160,-!p5@SALL1!1.04!10.09!SALL1;;chr17:37764128..37764258,-!p1@NEUROD2!1.04!10.09!NEUROD2;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.98!ZBTB20;;chr1:8877735..8877760,-!p8@RERE!1.03!26.23!RERE;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.43!PBX1;;chrX:118739835..118739862,-!p1@NKRF!1.03!10.76!NKRF;;chr9:77230443..77230455,+!p6@RORB!1.03!9.75!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.75!HIF3A;;chr1:165414259..165414273,-!p6@RXRG!1.03!9.75!RXRG;;chr4:149363662..149363688,-!p6@NR3C2!1.03!9.75!NR3C2;;chr2:178128199..178128245,-!p3@NFE2L2!1.02!51.45!NFE2L2;;chr19:38183208..38183225,-!p1@ZNF781!1.02!12.11!ZNF781;;chr8:93115584..93115642,-!p5@RUNX1T1!1.02!9.42!RUNX1T1;;chr18:52989031..52989079,-!p2@TCF4!1.01!22.19!TCF4;;chr14:75894391..75894435,+!p2@JDP2!1.01!10.76!JDP2;;chr17:40897043..40897087,-!p1@EZH1!1.00!81.04!EZH1;;chr19:37096139..37096170,-!p2@ZNF529!1.00!25.56!ZNF529;;chr3:44626446..44626477,+!p1@ZNF660!1.00!16.48!ZNF660;;chr17:38465413..38465438,+!p5@RARA!1.00!14.46!RARA;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.08!HSF4;;chr2:182545296..182545307,-!p3@NEUROD1!1.00!9.08!NEUROD1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!9.08!IKZF2;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.65!BCL6;;chr17:36861675..36861697,+!p3@MLLT6!0.99!20.85!MLLT6;;chr10:70320074..70320106,+!p1@TET1!0.99!17.82!TET1;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.78!ZNF662;;chr3:114819047..114819069,-!p16@ZBTB20!0.99!8.74!ZBTB20;;chrX:118739782..118739829,-!p2@NKRF!0.99!8.74!NKRF;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.74!ESRRG;;chr1:217262969..217262995,-!p7@ESRRG!0.99!8.74!ESRRG;;chr19:49140609..49140643,-!p1@DBP!0.98!49.43!DBP;;chr4:146859927..146860055,-!p1@ZNF827!0.97!51.45!ZNF827;;chr19:37096194..37096235,+!p1@ZNF382!0.97!27.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| |expression_enrichment_score=chr1:157069590..157069607,-!p1@ETV3L!3.43!2711.79!ETV3L;;chr12:55413751..55413765,+!p1@NEUROD4!3.06!1147.74!NEUROD4;;chr19:48325184..48325211,+!p1@CRX!2.84!684.34!CRX;;chr14:57277178..57277203,-!p1@OTX2!2.75!567.65!OTX2;;chr5:134871645..134871660,-!p1@NEUROG1!2.74!544.11!NEUROG1;;chr9:77112244..77112262,+!p1@RORB!2.46!322.16!RORB;;chr2:182545234..182545252,-!p1@NEUROD1!2.32!209.50!NEUROD1;;chr12:54779511..54779577,-!p5@ZNF385A!2.29!192.35!ZNF385A;;chr13:72441315..72441454,-!p1@DACH1!2.27!355.12!DACH1;;chr1:216896752..216896778,-!p1@ESRRG!2.27!186.30!ESRRG;;chr11:122852529..122852549,-!p1@BSX!2.21!162.43!BSX;;chr3:52002194..52002250,-!p5@PCBP4!2.21!160.07!PCBP4;;chr12:55413721..55413728,+!p3@NEUROD4!2.08!119.72!NEUROD4;;chr2:166326200..166326216,+!p1@CSRNP3!2.07!168.48!CSRNP3;;chr1:157069495..157069541,-!p2@ETV3L!2.06!115.01!ETV3L;;chr12:55413694..55413703,+!p2@NEUROD4!2.05!109.96!NEUROD4;;chr8:53162037..53162058,-!p5@ST18!1.99!96.51!ST18;;chr14:57272369..57272391,-!p2@OTX2!1.98!95.17!OTX2;;chr1:157069619..157069633,-!p3@ETV3L!1.96!90.12!ETV3L;;chr5:124084493..124084524,-!p2@ZNF608!1.95!188.66!ZNF608;;chr1:10754477..10754517,-!p1@CASZ1!1.87!118.37!CASZ1;;chr19:3772220..3772236,-!p1@RAX2!1.87!72.97!RAX2;;chr1:165414325..165414369,-!p1@RXRG!1.87!72.30!RXRG;;chr14:57277098..57277116,-!p3@OTX2!1.77!58.51!OTX2;;chr7:63505799..63505904,+!p1@ZNF727!1.76!56.50!ZNF727;;chr9:114287433..114287513,+!p1@ZNF483!1.74!135.19!ZNF483;;chr17:53342311..53342400,+!p1@HLF!1.71!56.83!HLF;;chr20:62795951..62795965,+!p3@MYT1!1.71!49.77!MYT1;;chr9:139094988..139095012,-!p1@LHX3!1.71!49.77!LHX3;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!159.06!BHLHE41;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!44.05!ZBED1;;chr12:26277817..26277863,-!p2@BHLHE41!1.64!57.50!BHLHE41;;chr8:135522475..135522486,-!p16@ZFAT!1.64!43.04!ZFAT;;chr8:53166899..53166914,-!p3@ST18!1.64!43.04!ST18;;chr2:223163706..223163730,-!p1@PAX3!1.62!41.03!PAX3;;chr15:76629123..76629151,+!p1@ISL2!1.60!42.71!ISL2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.60!39.01!ZNF676;;chr7:149470641..149470694,-!p1@ZNF467!1.58!159.73!ZNF467;;chr1:40105299..40105326,-!p1@HEYL!1.58!36.99!HEYL;;chr13:72441506..72441562,-!p3@DACH1!1.58!36.65!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.56!51.79!ZNF540;;chr1:157069555..157069569,-!p4@ETV3L!1.52!31.95!ETV3L;;chr12:24715376..24715432,-!p1@SOX5!1.49!37.33!SOX5;;chr1:216896780..216896800,-!p2@ESRRG!1.49!29.93!ESRRG;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.05!ZNF385A;;chr16:51185318..51185348,-!p2@SALL1!1.48!29.26!SALL1;;chr1:8877692..8877732,-!p1@RERE!1.46!214.89!RERE;;chr14:58797974..58798011,+!p3@ARID4A!1.46!27.91!ARID4A;;chr16:51185489..51185501,-!p6@SALL1!1.45!27.24!SALL1;;chr16:51185573..51185593,-!p3@SALL1!1.45!27.24!SALL1;;chr19:22193731..22193751,-!p1@ZNF208!1.44!26.23!ZNF208;;chr14:57277163..57277168,-!p4@OTX2!1.44!26.23!OTX2;;chr11:122852557..122852570,-!p2@BSX!1.42!25.56!BSX;;chr1:180199393..180199426,+!p1@LHX4!1.42!25.56!LHX4;;chr16:51185172..51185197,-!p1@SALL1!1.42!25.56!SALL1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.40!50.11!ZNF395;;chr13:72441074..72441172,-!p2@DACH1!1.40!24.21!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.40!23.88!ZIC1;;chr1:61548069..61548102,+!p3@NFIA!1.39!56.50!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.39!53.47!ZBTB20;;chr5:134871183..134871197,-!p3@NEUROG1!1.39!23.54!NEUROG1;;chr3:52001448..52001478,-!p2@PCBP4!1.38!310.05!PCBP4;;chr21:47063625..47063658,+!p1@PCBP3!1.38!97.86!PCBP3;;chr17:7492684..7492778,-!p2@SOX15!1.38!48.09!SOX15;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.37!22.53!SMARCE1;;chr2:95963052..95963106,+!p1@KCNIP3!1.36!21.86!KCNIP3;;chr1:10856639..10856662,-!p2@CASZ1!1.36!21.86!CASZ1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!158.73!MEF2C;;chr17:38465441..38465481,+!p6@RARA!1.34!25.56!RARA;;chr15:60884706..60884743,-!p1@RORA!1.33!103.91!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.33!20.51!PEG3;;chr7:100065686..100065701,-!p2@TSC22D4!1.32!19.84!TSC22D4;;chr7:73038839..73038862,-!p1@MLXIPL!1.32!19.84!MLXIPL;;chr3:114173720..114173794,-!p6@ZBTB20!1.32!19.84!ZBTB20;;chr9:77112225..77112238,+!p2@RORB!1.31!19.50!RORB;;chr9:109625401..109625458,+!p1@ZNF462!1.30!49.43!ZNF462;;chr5:124081008..124081016,-!p28@ZNF608!1.30!19.17!ZNF608;;chr3:181429704..181429722,+!p1@SOX2!1.30!18.83!SOX2;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.50!SOX10;;chr17:38256822..38256851,-!p1@NR1D1!1.28!138.21!NR1D1;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.16!CASZ1;;chr1:165414227..165414242,-!p2@RXRG!1.28!18.16!RXRG;;chr1:244219775..244219893,+!p2@ZNF238!1.27!24.21!ZNF238;;chr22:41763452..41763466,+!p2@TEF!1.27!17.82!TEF;;chr1:217262933..217262968,-!p3@ESRRG!1.27!17.49!ESRRG;;chr21:34442439..34442455,+!p1@OLIG1!1.26!17.15!OLIG1;;chr14:73360799..73360817,-!p1@DPF3!1.25!57.17!DPF3;;chr14:21994337..21994442,-!p1@SALL2!1.25!46.07!SALL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.25!16.81!NEUROD1;;chr5:124084466..124084484,-!p6@ZNF608!1.25!16.81!ZNF608;;chr3:128206762..128206781,-!p2@GATA2!1.24!100.55!GATA2;;chr3:18466787..18466839,-!p1@SATB1!1.23!69.95!SATB1;;chr1:61547894..61547968,+!p2@NFIA!1.23!46.41!NFIA;;chr15:61521417..61521460,-!p2@RORA!1.23!35.31!RORA;;chr7:74072135..74072171,+!p2@GTF2I!1.22!48.09!GTF2I;;chr8:93107451..93107468,-!p2@RUNX1T1!1.22!15.47!RUNX1T1;;chr5:88179017..88179046,-!p2@MEF2C!1.21!60.53!MEF2C;;chr2:145277882..145277967,-!p3@ZEB2!1.21!25.89!ZEB2;;chr10:35484053..35484076,+!p1@CREM!1.20!36.65!CREM;;chr19:46801639..46801699,+!p1@HIF3A!1.20!14.80!HIF3A;;chr1:61548225..61548299,+!p1@NFIA!1.19!184.96!NFIA;;chr2:214016314..214016343,-!p2@IKZF2!1.19!24.21!IKZF2;;chr12:26277929..26277955,-!p3@BHLHE41!1.19!20.51!BHLHE41;;chr3:114173859..114173873,-!p15@ZBTB20!1.19!14.46!ZBTB20;;chr17:36861496..36861586,+!p1@MLLT6!1.17!133.50!MLLT6;;chr14:21994449..21994524,-!p2@SALL2!1.17!41.36!SALL2;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.79!PAX6;;chr16:51185544..51185555,-!p7@SALL1!1.17!13.79!SALL1;;chr15:61521462..61521482,-!p4@RORA!1.16!13.45!RORA;;chr8:53162019..53162028,-!p12@ST18!1.16!13.45!ST18;;chr1:10856694..10856715,-!p3@CASZ1!1.16!13.45!CASZ1;;chr3:147127177..147127194,+!p2@ZIC1!1.16!13.45!ZIC1;;chr10:111987079..111987115,+!p3@MXI1!1.15!18.16!MXI1;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.80!ZNF385A;;chr20:62796052..62796067,+!p5@MYT1!1.15!13.12!MYT1;;chr9:139096968..139096979,-!p2@LHX3!1.15!13.12!LHX3;;chr6:15246200..15246214,+!p2@JARID2!1.14!34.97!JARID2;;chr2:16080659..16080685,+!p1@MYCN!1.14!12.78!MYCN;;chr16:51185511..51185522,-!p9@SALL1!1.14!12.78!SALL1;;chr14:58798013..58798071,+!p2@ARID4A!1.14!12.78!ARID4A;;chr9:3525867..3525902,-!p3@RFX3!1.13!42.71!RFX3;;chr15:57511609..57511651,+!p2@TCF12!1.13!20.85!TCF12;;chr11:8040739..8040815,+!p4@TUB!1.13!12.44!TUB;;chr12:106976678..106976708,+!p2@RFX4!1.13!12.44!RFX4;;chr3:114477934..114477961,-!p14@ZBTB20!1.13!12.44!ZBTB20;;chr9:139095030..139095040,-!p4@LHX3!1.13!12.44!LHX3;;chr2:178128250..178128293,-!p6@NFE2L2!1.12!30.60!NFE2L2;;chr20:45142154..45142227,-!p1@ZNF334!1.12!24.55!ZNF334;;chr19:37998036..37998098,+!p2@ZNF793!1.12!15.13!ZNF793;;chr14:21562671..21562702,-!p8@ZNF219!1.12!12.11!ZNF219;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.44!ZFHX4;;chr2:74229812..74229867,+!p1@TET3!1.11!29.93!TET3;;chr5:178368186..178368238,+!p1@ZNF454!1.11!21.52!ZNF454;;chr19:38042240..38042309,+!p2@ZNF540!1.09!17.15!ZNF540;;chr15:61521495..61521506,-!p5@RORA!1.08!11.10!RORA;;chr7:39125511..39125560,+!p1@POU6F2!1.08!11.10!POU6F2;;chr12:24102576..24102623,-!p2@SOX5!1.08!11.10!SOX5;;chr19:40562072..40562143,-!p1@ZNF780B!1.07!98.19!ZNF780B;;chr9:3525968..3526016,-!p1@RFX3!1.07!62.89!RFX3;;chr15:80696703..80696754,+!p1@ARNT2!1.07!14.46!ARNT2;;chr1:61548118..61548129,+!p9@NFIA!1.07!12.11!NFIA;;chr3:114819101..114819121,-!p7@ZBTB20!1.07!10.76!ZBTB20;;chr3:52001426..52001447,-!p3@PCBP4!1.06!29.59!PCBP4;;chr19:52391147..52391218,-!p1@ZNF577!1.05!32.28!ZNF577;;chr9:2015275..2015287,+!p8@SMARCA2!1.05!16.48!SMARCA2;;chr7:74072175..74072188,+!p6@GTF2I!1.05!14.12!GTF2I;;chrX:101186981..101187030,-!p1@ZMAT1!1.04!33.29!ZMAT1;;chr11:63684602..63684664,-!p1@RCOR2!1.04!19.84!RCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.04!10.09!SPI1;;chr14:21562648..21562658,-!p22@ZNF219!1.04!10.09!ZNF219;;chr16:51185149..51185160,-!p5@SALL1!1.04!10.09!SALL1;;chr17:37764128..37764258,-!p1@NEUROD2!1.04!10.09!NEUROD2;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.98!ZBTB20;;chr1:8877735..8877760,-!p8@RERE!1.03!26.23!RERE;;chr1:164528687..164528711,+!p6@PBX1!1.03!11.43!PBX1;;chrX:118739835..118739862,-!p1@NKRF!1.03!10.76!NKRF;;chr9:77230443..77230455,+!p6@RORB!1.03!9.75!RORB;;chr19:46800289..46800327,+!p2@HIF3A!1.03!9.75!HIF3A;;chr1:165414259..165414273,-!p6@RXRG!1.03!9.75!RXRG;;chr4:149363662..149363688,-!p6@NR3C2!1.03!9.75!NR3C2;;chr2:178128199..178128245,-!p3@NFE2L2!1.02!51.45!NFE2L2;;chr19:38183208..38183225,-!p1@ZNF781!1.02!12.11!ZNF781;;chr8:93115584..93115642,-!p5@RUNX1T1!1.02!9.42!RUNX1T1;;chr18:52989031..52989079,-!p2@TCF4!1.01!22.19!TCF4;;chr14:75894391..75894435,+!p2@JDP2!1.01!10.76!JDP2;;chr17:40897043..40897087,-!p1@EZH1!1.00!81.04!EZH1;;chr19:37096139..37096170,-!p2@ZNF529!1.00!25.56!ZNF529;;chr3:44626446..44626477,+!p1@ZNF660!1.00!16.48!ZNF660;;chr17:38465413..38465438,+!p5@RARA!1.00!14.46!RARA;;chr16:67197654..67197716,+!p3@HSF4!1.00!9.08!HSF4;;chr2:182545296..182545307,-!p3@NEUROD1!1.00!9.08!NEUROD1;;chr2:214016254..214016282,-!p7@IKZF2!1.00!9.08!IKZF2;;chr3:187463179..187463201,-!p2@BCL6!0.99!36.65!BCL6;;chr17:36861675..36861697,+!p3@MLLT6!0.99!20.85!MLLT6;;chr10:70320074..70320106,+!p1@TET1!0.99!17.82!TET1;;chr3:42947600..42947680,+!p1@ZNF662!0.99!12.78!ZNF662;;chr3:114819047..114819069,-!p16@ZBTB20!0.99!8.74!ZBTB20;;chrX:118739782..118739829,-!p2@NKRF!0.99!8.74!NKRF;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.74!ESRRG;;chr1:217262969..217262995,-!p7@ESRRG!0.99!8.74!ESRRG;;chr19:49140609..49140643,-!p1@DBP!0.98!49.43!DBP;;chr4:146859927..146860055,-!p1@ZNF827!0.97!51.45!ZNF827;;chr19:37096194..37096235,+!p1@ZNF382!0.97!27.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001894;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001905;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010133 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pineal%2520gland%252c%2520adult%252c%2520donor10252.CNhs12228.10160-103A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10160-103A7 | |id=FF:10160-103A7 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010160 | ||
|is_obsolete= | |||
|library_id=CNhs12228 | |||
|library_id_phase_based=2:CNhs12228 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10160 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.ACTTGA.10160 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10160 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.ACTTGA.10160 | |||
|name=pineal gland, adult, donor10252 | |name=pineal gland, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10031,,, | |profile_cagescan=NCig10031,,, | ||
|profile_hcage=CNhs12228,LSID852,release009,COMPLETED | |profile_hcage=CNhs12228,LSID852,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.151473880794678,0.151473880794678,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.255004721799355,0,0,0,0,0,0,0,0,0.0387343179539579,0,0.0224979256184208,0,0.125898678133584,0,0.0786121457344234,0,-0.0969923612426051,0,0,0.205604134376259,0,0,0,0,0,0,0,0,0.125898678133584,0,0,0,0,0,0,0,0.0389931560452457,0,0.462709008645311,0,0,0,0,0.0594852055730068,0.125898678133584,0.655892816309955,0,0.189965701394769,0.386259843075634,0.428571607030764,0,0,0.062949339066792,0,0.027863326895878,-0.075527861734103,0,0,0,0,0,0,0,0,0,0,0,0.125898678133584,0,0,0,0,0,0.0295250842111232,0.125898678133584,0,0,-0.129387224585289,-0.450885699705284,0,0,0,0.0409289770035791,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 83: | ||
|rna_tube_id=103A7 | |rna_tube_id=103A7 | ||
|rna_weight_ug=57.168 | |rna_weight_ug=57.168 | ||
|rnaseq_library_id=RDhi10097!SRhi10006.ACTTGA | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.34185353469504e-227!GO:0043226;organelle;7.98176578457864e-140!GO:0043229;intracellular organelle;1.62723229442228e-139!GO:0043231;intracellular membrane-bound organelle;7.33315113927778e-138!GO:0043227;membrane-bound organelle;7.33315113927778e-138!GO:0005737;cytoplasm;5.9445496058922e-136!GO:0044444;cytoplasmic part;2.94722790505692e-86!GO:0044422;organelle part;9.44874352582624e-70!GO:0044446;intracellular organelle part;1.11465288606707e-68!GO:0032991;macromolecular complex;4.35239125229747e-63!GO:0005515;protein binding;1.85906367534041e-59!GO:0005634;nucleus;8.27117115540777e-58!GO:0044428;nuclear part;3.03946281360839e-48!GO:0043170;macromolecule metabolic process;1.63794983633916e-47!GO:0044238;primary metabolic process;1.94377022818701e-47!GO:0003723;RNA binding;4.53273881824612e-47!GO:0044237;cellular metabolic process;2.87011546106839e-46!GO:0030529;ribonucleoprotein complex;6.30627745010874e-45!GO:0043233;organelle lumen;6.36955999985975e-45!GO:0031974;membrane-enclosed lumen;6.36955999985975e-45!GO:0016043;cellular component organization and biogenesis;9.83020903045002e-41!GO:0033036;macromolecule localization;2.29164341348935e-37!GO:0015031;protein transport;1.04583627909744e-36!GO:0005739;mitochondrion;1.78625856958276e-36!GO:0016071;mRNA metabolic process;2.66865094189294e-35!GO:0043283;biopolymer metabolic process;2.12040628632476e-34!GO:0006396;RNA processing;3.08540845465251e-34!GO:0043234;protein complex;8.79562693159451e-34!GO:0045184;establishment of protein localization;1.34280153349748e-33!GO:0008104;protein localization;2.74296461387645e-33!GO:0010467;gene expression;4.92827255438133e-33!GO:0008380;RNA splicing;3.6874381150697e-31!GO:0031981;nuclear lumen;4.55252696040549e-31!GO:0031090;organelle membrane;5.61140383025131e-31!GO:0006397;mRNA processing;3.1166986100376e-29!GO:0046907;intracellular transport;9.15503899701703e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.14371882820312e-26!GO:0031967;organelle envelope;2.14532563126497e-25!GO:0044429;mitochondrial part;2.88009950049844e-25!GO:0019538;protein metabolic process;3.10088091472556e-25!GO:0031975;envelope;3.19497665671195e-25!GO:0006886;intracellular protein transport;1.10758611017413e-24!GO:0051649;establishment of cellular localization;1.86572510362233e-24!GO:0051641;cellular localization;2.78864077489332e-23!GO:0005829;cytosol;9.838903640577e-23!GO:0005654;nucleoplasm;1.67642566674128e-22!GO:0044260;cellular macromolecule metabolic process;2.57393922243264e-21!GO:0016192;vesicle-mediated transport;3.40056206372589e-21!GO:0044267;cellular protein metabolic process;4.1809127119897e-21!GO:0016070;RNA metabolic process;1.1379425840028e-20!GO:0005681;spliceosome;2.90143004323746e-20!GO:0044451;nucleoplasm part;3.5616925411695e-20!GO:0006512;ubiquitin cycle;4.2059580066114e-20!GO:0005840;ribosome;4.97963226505323e-20!GO:0006119;oxidative phosphorylation;4.80877650703065e-19!GO:0065003;macromolecular complex assembly;4.77493488200488e-18!GO:0006412;translation;4.99226012451122e-18!GO:0003676;nucleic acid binding;1.62339078584876e-17!GO:0005740;mitochondrial envelope;1.67585484797142e-17!GO:0031966;mitochondrial membrane;2.22655151112795e-17!GO:0006996;organelle organization and biogenesis;4.56305318192858e-17!GO:0006457;protein folding;2.14226282602426e-16!GO:0016874;ligase activity;3.54319161393518e-16!GO:0019866;organelle inner membrane;4.20224621502288e-16!GO:0022607;cellular component assembly;4.46349945940365e-16!GO:0000166;nucleotide binding;7.43419923246885e-16!GO:0005743;mitochondrial inner membrane;2.69717712084879e-15!GO:0003735;structural constituent of ribosome;3.03853116637546e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03481464102883e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.39993896550197e-14!GO:0019941;modification-dependent protein catabolic process;2.08032062716449e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.08032062716449e-14!GO:0008134;transcription factor binding;2.09842481562402e-14!GO:0005794;Golgi apparatus;2.38135330989395e-14!GO:0044265;cellular macromolecule catabolic process;2.89237841937893e-14!GO:0044257;cellular protein catabolic process;2.98925113198061e-14!GO:0044455;mitochondrial membrane part;1.91278437282853e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98039701996991e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.17488102427216e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.35767994258027e-13!GO:0016462;pyrophosphatase activity;2.54824512785951e-13!GO:0016604;nuclear body;3.18993438780639e-13!GO:0017111;nucleoside-triphosphatase activity;5.42488413435178e-13!GO:0048770;pigment granule;6.21889686835553e-13!GO:0042470;melanosome;6.21889686835553e-13!GO:0033279;ribosomal subunit;7.10644018074316e-13!GO:0043412;biopolymer modification;1.50339430286924e-12!GO:0005746;mitochondrial respiratory chain;1.59525415368373e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.10974302599738e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.17775645988788e-12!GO:0003954;NADH dehydrogenase activity;2.17775645988788e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.17775645988788e-12!GO:0051082;unfolded protein binding;2.90792397253692e-12!GO:0016607;nuclear speck;3.45059733198557e-12!GO:0009058;biosynthetic process;4.70896240612026e-12!GO:0009059;macromolecule biosynthetic process;8.99787341200135e-12!GO:0044249;cellular biosynthetic process;1.01488612149332e-11!GO:0012505;endomembrane system;1.43453661051273e-11!GO:0048193;Golgi vesicle transport;1.97457513322458e-11!GO:0043687;post-translational protein modification;2.75153414788602e-11!GO:0006464;protein modification process;3.72894128548541e-11!GO:0022618;protein-RNA complex assembly;3.92679710468147e-11!GO:0043228;non-membrane-bound organelle;7.97027665735065e-11!GO:0043232;intracellular non-membrane-bound organelle;7.97027665735065e-11!GO:0042775;organelle ATP synthesis coupled electron transport;8.50779085824244e-11!GO:0042773;ATP synthesis coupled electron transport;8.50779085824244e-11!GO:0006605;protein targeting;9.16682778990951e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.23691410685908e-10!GO:0045271;respiratory chain complex I;1.23691410685908e-10!GO:0005747;mitochondrial respiratory chain complex I;1.23691410685908e-10!GO:0008639;small protein conjugating enzyme activity;1.66642612902142e-10!GO:0004842;ubiquitin-protein ligase activity;1.94553151824715e-10!GO:0044445;cytosolic part;2.20963520902108e-10!GO:0043285;biopolymer catabolic process;2.30584884114875e-10!GO:0032553;ribonucleotide binding;2.30584884114875e-10!GO:0032555;purine ribonucleotide binding;2.30584884114875e-10!GO:0031982;vesicle;2.4219764869168e-10!GO:0008135;translation factor activity, nucleic acid binding;2.50258500458371e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.56417946681946e-10!GO:0008565;protein transporter activity;5.46712504248779e-10!GO:0031410;cytoplasmic vesicle;6.4143479580802e-10!GO:0017076;purine nucleotide binding;1.10129773433109e-09!GO:0030163;protein catabolic process;1.18790208765143e-09!GO:0003712;transcription cofactor activity;1.38494382915147e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.41859369698276e-09!GO:0000375;RNA splicing, via transesterification reactions;1.41859369698276e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.41859369698276e-09!GO:0031980;mitochondrial lumen;1.44107432977113e-09!GO:0005759;mitochondrial matrix;1.44107432977113e-09!GO:0019787;small conjugating protein ligase activity;1.47351546783853e-09!GO:0006259;DNA metabolic process;1.52335270220129e-09!GO:0031988;membrane-bound vesicle;1.93526598390066e-09!GO:0009057;macromolecule catabolic process;2.27709110882252e-09!GO:0044248;cellular catabolic process;2.28655404217014e-09!GO:0006913;nucleocytoplasmic transport;2.59749512961042e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.93644872824763e-09!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.53613469761019e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.80164130526777e-09!GO:0045045;secretory pathway;5.31028256414049e-09!GO:0051169;nuclear transport;5.87733011343083e-09!GO:0000502;proteasome complex (sensu Eukaryota);6.97140717559346e-09!GO:0050794;regulation of cellular process;7.01470703188171e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.44752775047204e-09!GO:0031965;nuclear membrane;1.18532472579174e-08!GO:0019829;cation-transporting ATPase activity;1.24018465887289e-08!GO:0005635;nuclear envelope;1.56031302432237e-08!GO:0005783;endoplasmic reticulum;1.86182546942835e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.52131676749031e-08!GO:0016568;chromatin modification;2.52378331560292e-08!GO:0016881;acid-amino acid ligase activity;2.81891517757108e-08!GO:0005730;nucleolus;3.36875121768456e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.19097040524044e-08!GO:0016887;ATPase activity;6.5965980155656e-08!GO:0050789;regulation of biological process;7.44510540421594e-08!GO:0015935;small ribosomal subunit;1.00458915005384e-07!GO:0032559;adenyl ribonucleotide binding;1.01007216953425e-07!GO:0006446;regulation of translational initiation;1.06295534877223e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.19227161221348e-07!GO:0015986;ATP synthesis coupled proton transport;1.66242831330198e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.66242831330198e-07!GO:0048475;coated membrane;2.22136842440116e-07!GO:0030117;membrane coat;2.22136842440116e-07!GO:0051186;cofactor metabolic process;2.35583716351142e-07!GO:0042623;ATPase activity, coupled;2.64833012291166e-07!GO:0005524;ATP binding;2.80897879199919e-07!GO:0050657;nucleic acid transport;3.11022498753819e-07!GO:0051236;establishment of RNA localization;3.11022498753819e-07!GO:0050658;RNA transport;3.11022498753819e-07!GO:0006461;protein complex assembly;3.33324587831518e-07!GO:0006403;RNA localization;3.43464349010442e-07!GO:0005768;endosome;4.07384471487331e-07!GO:0030554;adenyl nucleotide binding;5.18414166114998e-07!GO:0006323;DNA packaging;5.21253730894985e-07!GO:0006413;translational initiation;7.6276837926427e-07!GO:0003743;translation initiation factor activity;9.26536562160582e-07!GO:0004386;helicase activity;1.080612162311e-06!GO:0048471;perinuclear region of cytoplasm;1.17975564891652e-06!GO:0032940;secretion by cell;1.71185441456178e-06!GO:0006163;purine nucleotide metabolic process;1.81611395721553e-06!GO:0044453;nuclear membrane part;1.86346442426606e-06!GO:0006366;transcription from RNA polymerase II promoter;1.86346442426606e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.09391093052928e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.09391093052928e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.1604172878934e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.1604172878934e-06!GO:0005643;nuclear pore;2.35309972488128e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.4658139923978e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.57380769228957e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.65102061301277e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.65102061301277e-06!GO:0019222;regulation of metabolic process;2.83208444727387e-06!GO:0009141;nucleoside triphosphate metabolic process;3.16269131817496e-06!GO:0009150;purine ribonucleotide metabolic process;3.40669304512449e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.49670453839036e-06!GO:0006793;phosphorus metabolic process;3.77610766594195e-06!GO:0006796;phosphate metabolic process;3.77610766594195e-06!GO:0009055;electron carrier activity;4.01110078154374e-06!GO:0006164;purine nucleotide biosynthetic process;4.5919858435494e-06!GO:0000151;ubiquitin ligase complex;4.94321609410706e-06!GO:0006754;ATP biosynthetic process;5.02287046169683e-06!GO:0006753;nucleoside phosphate metabolic process;5.02287046169683e-06!GO:0017038;protein import;5.03988902232578e-06!GO:0009259;ribonucleotide metabolic process;5.15048668711391e-06!GO:0006732;coenzyme metabolic process;5.74135657955935e-06!GO:0005761;mitochondrial ribosome;5.74135657955935e-06!GO:0000313;organellar ribosome;5.74135657955935e-06!GO:0044440;endosomal part;5.79175904999507e-06!GO:0010008;endosome membrane;5.79175904999507e-06!GO:0046034;ATP metabolic process;6.23799976194449e-06!GO:0051028;mRNA transport;6.5560159798062e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.55898794972885e-06!GO:0032446;protein modification by small protein conjugation;6.60977969868852e-06!GO:0015934;large ribosomal subunit;6.78554542719992e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.77486813166612e-06!GO:0009152;purine ribonucleotide biosynthetic process;8.48406721840635e-06!GO:0016564;transcription repressor activity;9.21103745080309e-06!GO:0048523;negative regulation of cellular process;9.30373866288219e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.05917281481585e-05!GO:0044431;Golgi apparatus part;1.23370123670075e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.32469113463111e-05!GO:0003713;transcription coactivator activity;1.55388692583289e-05!GO:0044432;endoplasmic reticulum part;1.57584586769256e-05!GO:0005083;small GTPase regulator activity;1.69237721243951e-05!GO:0016567;protein ubiquitination;1.74458098275413e-05!GO:0008026;ATP-dependent helicase activity;2.05302288908851e-05!GO:0051276;chromosome organization and biogenesis;2.08465718222952e-05!GO:0008047;enzyme activator activity;2.09418716218188e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.12281248793418e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.23706866017153e-05!GO:0015630;microtubule cytoskeleton;2.71377029939319e-05!GO:0016044;membrane organization and biogenesis;3.1017098726524e-05!GO:0006350;transcription;3.14463283254361e-05!GO:0043566;structure-specific DNA binding;3.2705979933674e-05!GO:0031252;leading edge;3.2705979933674e-05!GO:0000245;spliceosome assembly;3.28875971704425e-05!GO:0030695;GTPase regulator activity;3.41983776193345e-05!GO:0009260;ribonucleotide biosynthetic process;3.46916775569186e-05!GO:0045333;cellular respiration;3.88109506668366e-05!GO:0003924;GTPase activity;3.93098576984635e-05!GO:0009060;aerobic respiration;3.93098576984635e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.93098576984635e-05!GO:0006613;cotranslational protein targeting to membrane;4.30215769058231e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.55475864996471e-05!GO:0008287;protein serine/threonine phosphatase complex;5.13879844486011e-05!GO:0008270;zinc ion binding;5.25196657982735e-05!GO:0005770;late endosome;5.2827770513566e-05!GO:0031072;heat shock protein binding;5.7144899822886e-05!GO:0005793;ER-Golgi intermediate compartment;5.83603832286951e-05!GO:0019899;enzyme binding;6.77118921406053e-05!GO:0015631;tubulin binding;6.80551704766259e-05!GO:0009056;catabolic process;6.8499502713433e-05!GO:0006974;response to DNA damage stimulus;6.87529710891174e-05!GO:0045259;proton-transporting ATP synthase complex;7.12004369910217e-05!GO:0008092;cytoskeletal protein binding;8.44427928311435e-05!GO:0030120;vesicle coat;9.06088955098426e-05!GO:0030662;coated vesicle membrane;9.06088955098426e-05!GO:0051188;cofactor biosynthetic process;9.35974550270172e-05!GO:0005773;vacuole;0.000100851285940115!GO:0006606;protein import into nucleus;0.000113402746206499!GO:0065007;biological regulation;0.000113588554921482!GO:0005798;Golgi-associated vesicle;0.000117617445546678!GO:0031323;regulation of cellular metabolic process;0.000143455963225971!GO:0010468;regulation of gene expression;0.000148052497164138!GO:0051170;nuclear import;0.000151840506175906!GO:0051168;nuclear export;0.000172270922345425!GO:0003714;transcription corepressor activity;0.000176484996103109!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000179850065217351!GO:0046930;pore complex;0.000183170634688503!GO:0003724;RNA helicase activity;0.000216386514273646!GO:0048519;negative regulation of biological process;0.000221688778313236!GO:0019904;protein domain specific binding;0.000225657685557396!GO:0030135;coated vesicle;0.00022865558530059!GO:0009108;coenzyme biosynthetic process;0.000255948599473156!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000262442065529758!GO:0004812;aminoacyl-tRNA ligase activity;0.000262442065529758!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000262442065529758!GO:0007264;small GTPase mediated signal transduction;0.000264128326538495!GO:0030029;actin filament-based process;0.000264128326538495!GO:0032774;RNA biosynthetic process;0.000275232435654095!GO:0005791;rough endoplasmic reticulum;0.000282204962243863!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000287870728138626!GO:0006351;transcription, DNA-dependent;0.000287870728138626!GO:0005769;early endosome;0.000293130636935969!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000313976450091628!GO:0015399;primary active transmembrane transporter activity;0.000313976450091628!GO:0003697;single-stranded DNA binding;0.000333062746488304!GO:0016481;negative regulation of transcription;0.00033628356187026!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000342474583416205!GO:0006897;endocytosis;0.000369730942893723!GO:0010324;membrane invagination;0.000369730942893723!GO:0016310;phosphorylation;0.000403040893701706!GO:0005667;transcription factor complex;0.000436347180994161!GO:0065002;intracellular protein transport across a membrane;0.000466210679514551!GO:0006281;DNA repair;0.000485195415583469!GO:0006612;protein targeting to membrane;0.000497569173917246!GO:0043038;amino acid activation;0.000541085125704696!GO:0006418;tRNA aminoacylation for protein translation;0.000541085125704696!GO:0043039;tRNA aminoacylation;0.000541085125704696!GO:0000139;Golgi membrane;0.00054463085548131!GO:0005789;endoplasmic reticulum membrane;0.000569305308213288!GO:0006099;tricarboxylic acid cycle;0.000601018335314978!GO:0046356;acetyl-CoA catabolic process;0.000601018335314978!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000647175092347068!GO:0043492;ATPase activity, coupled to movement of substances;0.000654104548714965!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000718608872455343!GO:0007010;cytoskeleton organization and biogenesis;0.000757724147859265!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000772546133658739!GO:0030118;clathrin coat;0.000772546133658739!GO:0045786;negative regulation of progression through cell cycle;0.000796098728403616!GO:0008654;phospholipid biosynthetic process;0.000891636547029521!GO:0030532;small nuclear ribonucleoprotein complex;0.00095942683886413!GO:0051087;chaperone binding;0.000962385587654101!GO:0031324;negative regulation of cellular metabolic process;0.00101333613487364!GO:0006084;acetyl-CoA metabolic process;0.00102436705637449!GO:0003690;double-stranded DNA binding;0.00107805344378581!GO:0045449;regulation of transcription;0.00107805344378581!GO:0006752;group transfer coenzyme metabolic process;0.00108941981776941!GO:0006607;NLS-bearing substrate import into nucleus;0.00119041990643622!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00119695505594825!GO:0000323;lytic vacuole;0.00122199860572545!GO:0005764;lysosome;0.00122199860572545!GO:0009892;negative regulation of metabolic process;0.00123686591474644!GO:0004722;protein serine/threonine phosphatase activity;0.00127551407915855!GO:0006402;mRNA catabolic process;0.00136169885453961!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00137371216194887!GO:0005813;centrosome;0.00137555399392635!GO:0030133;transport vesicle;0.00140505573200693!GO:0008017;microtubule binding;0.0014569213735108!GO:0016363;nuclear matrix;0.00147706175774215!GO:0006355;regulation of transcription, DNA-dependent;0.00153027329830149!GO:0005096;GTPase activator activity;0.00167123376383627!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00182816812602295!GO:0030384;phosphoinositide metabolic process;0.00184588790523894!GO:0022890;inorganic cation transmembrane transporter activity;0.00191666184869182!GO:0046914;transition metal ion binding;0.00195206483633776!GO:0016791;phosphoric monoester hydrolase activity;0.00201101444490331!GO:0004721;phosphoprotein phosphatase activity;0.00204049835260529!GO:0006891;intra-Golgi vesicle-mediated transport;0.00206497490322189!GO:0005223;intracellular cGMP activated cation channel activity;0.00211558149335093!GO:0048500;signal recognition particle;0.00219183838032509!GO:0051427;hormone receptor binding;0.00225872702254472!GO:0006399;tRNA metabolic process;0.00228044265934703!GO:0005839;proteasome core complex (sensu Eukaryota);0.0023906555549341!GO:0030426;growth cone;0.00243179471217544!GO:0007265;Ras protein signal transduction;0.00251609963481046!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00260629511512026!GO:0030867;rough endoplasmic reticulum membrane;0.00260629511512026!GO:0019867;outer membrane;0.00262261710113001!GO:0031124;mRNA 3'-end processing;0.00263243580389676!GO:0043623;cellular protein complex assembly;0.00264443023746711!GO:0032561;guanyl ribonucleotide binding;0.00268382629093639!GO:0019001;guanyl nucleotide binding;0.00268382629093639!GO:0019783;small conjugating protein-specific protease activity;0.00287670241527185!GO:0030427;site of polarized growth;0.00291067926564142!GO:0009109;coenzyme catabolic process;0.00306040821338907!GO:0042254;ribosome biogenesis and assembly;0.00307491249687933!GO:0008022;protein C-terminus binding;0.00308099662652126!GO:0005048;signal sequence binding;0.00312663303956365!GO:0005741;mitochondrial outer membrane;0.00313841138500732!GO:0006650;glycerophospholipid metabolic process;0.00318217065683353!GO:0048489;synaptic vesicle transport;0.00326485390536121!GO:0016311;dephosphorylation;0.0032915282592404!GO:0005815;microtubule organizing center;0.00339388772682048!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00341373997505123!GO:0016563;transcription activator activity;0.00343222898367768!GO:0019717;synaptosome;0.00344592162947927!GO:0004843;ubiquitin-specific protease activity;0.00352199151354726!GO:0012501;programmed cell death;0.00368792594656589!GO:0035257;nuclear hormone receptor binding;0.00371535237737689!GO:0006333;chromatin assembly or disassembly;0.00399205456503617!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00406103085199697!GO:0004221;ubiquitin thiolesterase activity;0.00414426104011834!GO:0006915;apoptosis;0.00419276946195351!GO:0005525;GTP binding;0.0042536527909578!GO:0008250;oligosaccharyl transferase complex;0.00438321204659481!GO:0022406;membrane docking;0.00454183364919436!GO:0048278;vesicle docking;0.00454183364919436!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00473066912385767!GO:0008219;cell death;0.00476832747317123!GO:0016265;death;0.00476832747317123!GO:0051056;regulation of small GTPase mediated signal transduction;0.00490288945160222!GO:0031968;organelle outer membrane;0.00495944905553286!GO:0005874;microtubule;0.00497280356390656!GO:0003729;mRNA binding;0.00507972050299857!GO:0008186;RNA-dependent ATPase activity;0.00513484734891346!GO:0030137;COPI-coated vesicle;0.00514856586950198!GO:0007049;cell cycle;0.00530880284636324!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00531082081034737!GO:0051789;response to protein stimulus;0.00531082081034737!GO:0006986;response to unfolded protein;0.00531082081034737!GO:0000159;protein phosphatase type 2A complex;0.00540383729280743!GO:0051246;regulation of protein metabolic process;0.00543108650660878!GO:0008139;nuclear localization sequence binding;0.00544818733752382!GO:0051726;regulation of cell cycle;0.00555434927300844!GO:0004298;threonine endopeptidase activity;0.00578378029175902!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00578675841149303!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00578675841149303!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00578675841149303!GO:0006904;vesicle docking during exocytosis;0.00581078159737819!GO:0051920;peroxiredoxin activity;0.00587326758951176!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00594332122254507!GO:0045047;protein targeting to ER;0.00594332122254507!GO:0051187;cofactor catabolic process;0.00609223783284014!GO:0031902;late endosome membrane;0.00612223607238887!GO:0019902;phosphatase binding;0.00619173943705175!GO:0043021;ribonucleoprotein binding;0.00628244903597185!GO:0008601;protein phosphatase type 2A regulator activity;0.00645205551601896!GO:0046489;phosphoinositide biosynthetic process;0.0064546284368405!GO:0000074;regulation of progression through cell cycle;0.00650173885600674!GO:0016197;endosome transport;0.00651188363077044!GO:0046578;regulation of Ras protein signal transduction;0.00689059493738985!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00695978229914881!GO:0055083;monovalent inorganic anion homeostasis;0.00695978229914881!GO:0055064;chloride ion homeostasis;0.00695978229914881!GO:0030644;cellular chloride ion homeostasis;0.00695978229914881!GO:0043087;regulation of GTPase activity;0.00740854493288624!GO:0006378;mRNA polyadenylation;0.00740854493288624!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00747279862518505!GO:0001726;ruffle;0.00755578607373542!GO:0003746;translation elongation factor activity;0.00757480458088027!GO:0031123;RNA 3'-end processing;0.0076732816707574!GO:0030027;lamellipodium;0.00794620168521211!GO:0050811;GABA receptor binding;0.00799158807024541!GO:0004576;oligosaccharyl transferase activity;0.00800801331595124!GO:0006383;transcription from RNA polymerase III promoter;0.00823409968072773!GO:0005788;endoplasmic reticulum lumen;0.00848038492864236!GO:0000118;histone deacetylase complex;0.00873442302767467!GO:0006401;RNA catabolic process;0.00873553252384441!GO:0008312;7S RNA binding;0.00878379381702068!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00911871882048052!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00932322663391524!GO:0016740;transferase activity;0.00937153811969989!GO:0046474;glycerophospholipid biosynthetic process;0.00979922964536209!GO:0045892;negative regulation of transcription, DNA-dependent;0.00990850659994144!GO:0006414;translational elongation;0.0110774503457686!GO:0006470;protein amino acid dephosphorylation;0.0113439662289503!GO:0009966;regulation of signal transduction;0.0115374349006215!GO:0016859;cis-trans isomerase activity;0.0116922976454839!GO:0042802;identical protein binding;0.0117383241795437!GO:0046467;membrane lipid biosynthetic process;0.011935902967233!GO:0031901;early endosome membrane;0.011935902967233!GO:0016050;vesicle organization and biogenesis;0.011935902967233!GO:0003682;chromatin binding;0.0120845564144124!GO:0009117;nucleotide metabolic process;0.0127355386845132!GO:0004004;ATP-dependent RNA helicase activity;0.0130497376416317!GO:0005774;vacuolar membrane;0.0131434600715281!GO:0006352;transcription initiation;0.0133624804953105!GO:0006916;anti-apoptosis;0.0135642353678691!GO:0006810;transport;0.0137064661836599!GO:0051128;regulation of cellular component organization and biogenesis;0.0138338031321593!GO:0033116;ER-Golgi intermediate compartment membrane;0.014530287284053!GO:0007034;vacuolar transport;0.0150052308879602!GO:0030658;transport vesicle membrane;0.0164825107521244!GO:0030663;COPI coated vesicle membrane;0.0169483545035098!GO:0030126;COPI vesicle coat;0.0169483545035098!GO:0005869;dynactin complex;0.0170433742582649!GO:0032259;methylation;0.0170433742582649!GO:0015980;energy derivation by oxidation of organic compounds;0.0174867946244718!GO:0000209;protein polyubiquitination;0.0181223332840062!GO:0018196;peptidyl-asparagine modification;0.0181223332840062!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0181223332840062!GO:0051252;regulation of RNA metabolic process;0.0186997832868366!GO:0043069;negative regulation of programmed cell death;0.0186997832868366!GO:0030641;cellular hydrogen ion homeostasis;0.0190945989293534!GO:0006405;RNA export from nucleus;0.0193961104969545!GO:0042026;protein refolding;0.0195386280987147!GO:0000314;organellar small ribosomal subunit;0.0197705196677663!GO:0005763;mitochondrial small ribosomal subunit;0.0197705196677663!GO:0043066;negative regulation of apoptosis;0.0204599920238952!GO:0000059;protein import into nucleus, docking;0.0204599920238952!GO:0006611;protein export from nucleus;0.0206420933896309!GO:0005099;Ras GTPase activator activity;0.0209287370861678!GO:0030134;ER to Golgi transport vesicle;0.0209287370861678!GO:0006643;membrane lipid metabolic process;0.0209287370861678!GO:0005545;phosphatidylinositol binding;0.0211173699194422!GO:0030660;Golgi-associated vesicle membrane;0.0211173699194422!GO:0007040;lysosome organization and biogenesis;0.0212008324553087!GO:0065004;protein-DNA complex assembly;0.021270147744122!GO:0031625;ubiquitin protein ligase binding;0.0223022612629148!GO:0008154;actin polymerization and/or depolymerization;0.0223665459267262!GO:0043414;biopolymer methylation;0.0224230791553484!GO:0048487;beta-tubulin binding;0.0226674695237736!GO:0042158;lipoprotein biosynthetic process;0.0226679307852716!GO:0006892;post-Golgi vesicle-mediated transport;0.0228460318305638!GO:0019903;protein phosphatase binding;0.0232054711703854!GO:0007019;microtubule depolymerization;0.0232624841685933!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0233988792675649!GO:0015002;heme-copper terminal oxidase activity;0.0233988792675649!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0233988792675649!GO:0004129;cytochrome-c oxidase activity;0.0233988792675649!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0234088024912982!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0235913194603695!GO:0007033;vacuole organization and biogenesis;0.0237137467989662!GO:0046488;phosphatidylinositol metabolic process;0.0241009641268357!GO:0042578;phosphoric ester hydrolase activity;0.0241217423923898!GO:0035035;histone acetyltransferase binding;0.0245108271625108!GO:0009719;response to endogenous stimulus;0.0245634363188333!GO:0016779;nucleotidyltransferase activity;0.0248835032062547!GO:0003725;double-stranded RNA binding;0.0254832536778718!GO:0030127;COPII vesicle coat;0.0254832536778718!GO:0012507;ER to Golgi transport vesicle membrane;0.0254832536778718!GO:0008361;regulation of cell size;0.0254913271609055!GO:0006364;rRNA processing;0.0254913271609055!GO:0003779;actin binding;0.0254913271609055!GO:0003711;transcription elongation regulator activity;0.0256930310520034!GO:0006497;protein amino acid lipidation;0.0261431145703247!GO:0030258;lipid modification;0.0262865435549197!GO:0006661;phosphatidylinositol biosynthetic process;0.0265209872841233!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0265209872841233!GO:0005905;coated pit;0.0265209872841233!GO:0005938;cell cortex;0.0267503102144001!GO:0006376;mRNA splice site selection;0.027003299717572!GO:0000389;nuclear mRNA 3'-splice site recognition;0.027003299717572!GO:0005885;Arp2/3 protein complex;0.0270250563293908!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0282994321939663!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0282994321939663!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0285399201689916!GO:0030521;androgen receptor signaling pathway;0.0287400800506594!GO:0030119;AP-type membrane coat adaptor complex;0.0298396028283051!GO:0016072;rRNA metabolic process;0.0298849928308866!GO:0006338;chromatin remodeling;0.0298849928308866!GO:0008286;insulin receptor signaling pathway;0.0299021561092609!GO:0043631;RNA polyadenylation;0.0325914031703224!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0327192516502934!GO:0035258;steroid hormone receptor binding;0.0335473345785345!GO:0000339;RNA cap binding;0.0338802430016263!GO:0030131;clathrin adaptor complex;0.0342245949090125!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0342597325878683!GO:0009165;nucleotide biosynthetic process;0.0342853010931405!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0344243024991763!GO:0006301;postreplication repair;0.034741176632445!GO:0001754;eye photoreceptor cell differentiation;0.0349902060677639!GO:0005765;lysosomal membrane;0.0350530769264234!GO:0032984;macromolecular complex disassembly;0.0358555851196279!GO:0030176;integral to endoplasmic reticulum membrane;0.0358555851196279!GO:0016790;thiolester hydrolase activity;0.036289366790867!GO:0044437;vacuolar part;0.0367737384784447!GO:0030041;actin filament polymerization;0.0367845947278677!GO:0000287;magnesium ion binding;0.0369627539877548!GO:0051539;4 iron, 4 sulfur cluster binding;0.0372831825986505!GO:0006818;hydrogen transport;0.0372896380250748!GO:0019894;kinesin binding;0.0374490000250772!GO:0004674;protein serine/threonine kinase activity;0.0374516475493713!GO:0006672;ceramide metabolic process;0.0384377972503749!GO:0006595;polyamine metabolic process;0.0390298354408476!GO:0016853;isomerase activity;0.0392378261387859!GO:0005868;cytoplasmic dynein complex;0.0415541328897926!GO:0000902;cell morphogenesis;0.0418370399068222!GO:0032989;cellular structure morphogenesis;0.0418370399068222!GO:0046839;phospholipid dephosphorylation;0.042113415897905!GO:0005307;choline:sodium symporter activity;0.0428518081934828!GO:0008292;acetylcholine biosynthetic process;0.0428518081934828!GO:0007004;telomere maintenance via telomerase;0.0428518081934828!GO:0016049;cell growth;0.0434907024791041!GO:0007030;Golgi organization and biogenesis;0.0437314908691525!GO:0042271;susceptibility to natural killer cell mediated cytotoxicity;0.0437918886238577!GO:0016741;transferase activity, transferring one-carbon groups;0.0443144358923878!GO:0005852;eukaryotic translation initiation factor 3 complex;0.044434557916197!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0452043441844285!GO:0016251;general RNA polymerase II transcription factor activity;0.0453367575152562!GO:0040029;regulation of gene expression, epigenetic;0.0467978942948119!GO:0008168;methyltransferase activity;0.0468279919685184!GO:0048499;synaptic vesicle membrane organization and biogenesis;0.0468279919685184!GO:0030285;integral to synaptic vesicle membrane;0.0468279919685184!GO:0030004;cellular monovalent inorganic cation homeostasis;0.0469069022043682!GO:0055067;monovalent inorganic cation homeostasis;0.0469069022043682!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0469706365398254!GO:0016566;specific transcriptional repressor activity;0.0469774000130783!GO:0031461;cullin-RING ubiquitin ligase complex;0.0474497724637611!GO:0030742;GTP-dependent protein binding;0.0481728368676873!GO:0030880;RNA polymerase complex;0.048515456442535!GO:0045745;positive regulation of G-protein coupled receptor protein signaling pathway;0.048515456442535!GO:0042706;eye photoreceptor cell fate commitment;0.048515456442535!GO:0046552;photoreceptor cell fate commitment;0.048515456442535!GO:0015992;proton transport;0.048515456442535!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.048515456442535!GO:0016585;chromatin remodeling complex;0.0485270684671731!GO:0000015;phosphopyruvate hydratase complex;0.0485270684671731!GO:0004634;phosphopyruvate hydratase activity;0.0485270684671731!GO:0016788;hydrolase activity, acting on ester bonds;0.0485397867247818!GO:0005100;Rho GTPase activator activity;0.0487510299496431 | |||
|sample_id=10160 | |sample_id=10160 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 106: | ||
|sample_tissue=pineal gland | |sample_tissue=pineal gland | ||
|top_motifs=CRX:9.12787857941;VSX1,2:4.2317081714;RORA:3.81789648382;HOX{A6,A7,B6,B7}:3.20807561729;PRRX1,2:2.99550961012;RREB1:2.48711570646;POU6F1:2.46069801781;LHX3,4:2.40191030822;ZFP161:2.3652662914;HBP1_HMGB_SSRP1_UBTF:2.27838426062;TGIF1:2.18619958263;AHR_ARNT_ARNT2:2.12882566824;POU3F1..4:2.11162361363;GFI1:2.06936794053;BPTF:2.00838220235;NRF1:1.9833765631;GATA4:1.98169697251;FOXP3:1.9804537545;CUX2:1.97786569895;ZBTB6:1.93535392156;MED-1{core}:1.88618914133;MYFfamily:1.84849970062;PRDM1:1.83918162009;GCM1,2:1.82573719571;PATZ1:1.81068111857;CDC5L:1.80728223478;ATF2:1.76268310212;FOXM1:1.7396025513;JUN:1.71841381268;ALX1:1.68333321665;BREu{core}:1.66185186327;NKX3-2:1.59199583565;RFX2..5_RFXANK_RFXAP:1.58410283776;FOXA2:1.56388364547;FOX{D1,D2}:1.54347057596;HOX{A4,D4}:1.539620632;REST:1.52451752632;MZF1:1.48741883236;SOX2:1.47992491658;GFI1B:1.433584814;OCT4_SOX2{dimer}:1.42674955637;EGR1..3:1.40906924845;RFX1:1.40119040433;PITX1..3:1.38630478833;GTF2I:1.36617391852;MTF1:1.35734998485;KLF4:1.34397377889;STAT1,3:1.34320431765;MYOD1:1.33031160158;AR:1.31354416981;FOXP1:1.31110767141;FOXN1:1.26723232731;CREB1:1.25970738914;IKZF2:1.24483750625;NFIX:1.23842684179;NANOG:1.23483559003;ADNP_IRX_SIX_ZHX:1.23396734414;TFAP2B:1.21947374698;YY1:1.20977699967;DBP:1.16773371564;ESRRA:1.16462939928;ZNF143:1.10756776469;T:1.08742987604;ALX4:1.04887507778;MAZ:1.04217984025;SREBF1,2:1.03993772488;SOX17:1.01103167701;TLX1..3_NFIC{dimer}:0.991267154129;EP300:0.976923140847;RBPJ:0.973709436704;SMAD1..7,9:0.966712996113;NHLH1,2:0.901766096657;GATA6:0.845075684033;SOX{8,9,10}:0.812883568522;STAT5{A,B}:0.787905761224;SP1:0.769208299212;LMO2:0.747884045824;NFY{A,B,C}:0.72791060389;PAX3,7:0.726798861827;GTF2A1,2:0.72152637817;ATF5_CREB3:0.68278212654;ARID5B:0.671792284846;HSF1,2:0.654378153307;TOPORS:0.624918824931;FOXO1,3,4:0.623909223874;MEF2{A,B,C,D}:0.620014504518;HIC1:0.607251442594;ZIC1..3:0.582307306407;ZBTB16:0.577894550128;POU1F1:0.571948635028;MTE{core}:0.570846937622;NKX6-1,2:0.506423334063;TFAP2{A,C}:0.501784034417;PPARG:0.500753438306;NFIL3:0.485639760345;FOX{I1,J2}:0.473313140235;POU5F1:0.392867253959;SPZ1:0.390974104122;PAX5:0.377822044479;NKX2-3_NKX2-5:0.359894011383;NR1H4:0.2920803834;TAL1_TCF{3,4,12}:0.272367825496;NKX2-1,4:0.27081087712;ELK1,4_GABP{A,B1}:0.24329321465;ATF4:0.239472417137;ZNF384:0.225511882856;HOXA9_MEIS1:0.220955478274;PAX8:0.21275931991;PAX1,9:0.211730741847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.183887067363;NANOG{mouse}:0.150250548923;PAX6:0.143584057885;PDX1:0.0733920805246;TEF:0.0577986685287;PAX2:0.0500043575825;EBF1:0.00350159532201;MYBL2:-0.0249447353683;IRF7:-0.0346964914181;NFATC1..3:-0.0412401473132;ZEB1:-0.041547260056;CDX1,2,4:-0.0977797633043;FOXL1:-0.100015335466;GZF1:-0.136808597751;SOX5:-0.141481202869;LEF1_TCF7_TCF7L1,2:-0.167889913571;FOXQ1:-0.18077009595;ATF6:-0.184621444168;FOX{F1,F2,J1}:-0.19176896535;HIF1A:-0.222111076275;NR3C1:-0.271247764762;IRF1,2:-0.280088907383;RXR{A,B,G}:-0.290366598597;EVI1:-0.306556568236;STAT2,4,6:-0.307025828352;FOXD3:-0.308876060911;ZNF423:-0.320153395556;HNF1A:-0.321686045723;HMGA1,2:-0.323355339069;NFE2:-0.326700908515;HAND1,2:-0.383785638433;NFE2L2:-0.386477054122;SPI1:-0.39981150724;TFDP1:-0.405889647725;NFE2L1:-0.415588915075;XCPE1{core}:-0.428024964077;TLX2:-0.434537175848;PAX4:-0.441108995024;SNAI1..3:-0.447807102256;CEBPA,B_DDIT3:-0.475002265987;ONECUT1,2:-0.479789958924;ELF1,2,4:-0.501805397536;SPIB:-0.530550743981;NR5A1,2:-0.587023969512;FOSL2:-0.58737255543;TFCP2:-0.610709770217;AIRE:-0.612633320551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.617373143311;ETS1,2:-0.707457503963;NKX2-2,8:-0.715737336455;DMAP1_NCOR{1,2}_SMARC:-0.718789398401;PBX1:-0.746621440748;HLF:-0.74707768819;RXRA_VDR{dimer}:-0.786622583292;UFEwm:-0.801809700608;IKZF1:-0.816794732828;bHLH_family:-0.8341203639;HNF4A_NR2F1,2:-0.834145877158;NFKB1_REL_RELA:-0.850149150328;TEAD1:-0.85594967517;MAFB:-0.903129247457;MYB:-0.923437246033;HMX1:-0.962643977948;BACH2:-0.971989290533;E2F1..5:-0.974467573365;XBP1:-1.01958678949;NKX3-1:-1.02870995003;SRF:-1.04343399699;FOS_FOS{B,L1}_JUN{B,D}:-1.0703044034;TFAP4:-1.10130709454;TBX4,5:-1.14455850893;TP53:-1.14601525898;RUNX1..3:-1.18323405138;HOX{A5,B5}:-1.3559989399;POU2F1..3:-1.46880632886;TBP:-1.51066493597;ZNF238:-1.56534007582;ESR1:-1.72456455274;NR6A1:-1.84187545588;GLI1..3:-2.02948925207;EN1,2:-2.41873446105;ZNF148:-2.69695490816;HES1:-3.7343175505 | |top_motifs=CRX:9.12787857941;VSX1,2:4.2317081714;RORA:3.81789648382;HOX{A6,A7,B6,B7}:3.20807561729;PRRX1,2:2.99550961012;RREB1:2.48711570646;POU6F1:2.46069801781;LHX3,4:2.40191030822;ZFP161:2.3652662914;HBP1_HMGB_SSRP1_UBTF:2.27838426062;TGIF1:2.18619958263;AHR_ARNT_ARNT2:2.12882566824;POU3F1..4:2.11162361363;GFI1:2.06936794053;BPTF:2.00838220235;NRF1:1.9833765631;GATA4:1.98169697251;FOXP3:1.9804537545;CUX2:1.97786569895;ZBTB6:1.93535392156;MED-1{core}:1.88618914133;MYFfamily:1.84849970062;PRDM1:1.83918162009;GCM1,2:1.82573719571;PATZ1:1.81068111857;CDC5L:1.80728223478;ATF2:1.76268310212;FOXM1:1.7396025513;JUN:1.71841381268;ALX1:1.68333321665;BREu{core}:1.66185186327;NKX3-2:1.59199583565;RFX2..5_RFXANK_RFXAP:1.58410283776;FOXA2:1.56388364547;FOX{D1,D2}:1.54347057596;HOX{A4,D4}:1.539620632;REST:1.52451752632;MZF1:1.48741883236;SOX2:1.47992491658;GFI1B:1.433584814;OCT4_SOX2{dimer}:1.42674955637;EGR1..3:1.40906924845;RFX1:1.40119040433;PITX1..3:1.38630478833;GTF2I:1.36617391852;MTF1:1.35734998485;KLF4:1.34397377889;STAT1,3:1.34320431765;MYOD1:1.33031160158;AR:1.31354416981;FOXP1:1.31110767141;FOXN1:1.26723232731;CREB1:1.25970738914;IKZF2:1.24483750625;NFIX:1.23842684179;NANOG:1.23483559003;ADNP_IRX_SIX_ZHX:1.23396734414;TFAP2B:1.21947374698;YY1:1.20977699967;DBP:1.16773371564;ESRRA:1.16462939928;ZNF143:1.10756776469;T:1.08742987604;ALX4:1.04887507778;MAZ:1.04217984025;SREBF1,2:1.03993772488;SOX17:1.01103167701;TLX1..3_NFIC{dimer}:0.991267154129;EP300:0.976923140847;RBPJ:0.973709436704;SMAD1..7,9:0.966712996113;NHLH1,2:0.901766096657;GATA6:0.845075684033;SOX{8,9,10}:0.812883568522;STAT5{A,B}:0.787905761224;SP1:0.769208299212;LMO2:0.747884045824;NFY{A,B,C}:0.72791060389;PAX3,7:0.726798861827;GTF2A1,2:0.72152637817;ATF5_CREB3:0.68278212654;ARID5B:0.671792284846;HSF1,2:0.654378153307;TOPORS:0.624918824931;FOXO1,3,4:0.623909223874;MEF2{A,B,C,D}:0.620014504518;HIC1:0.607251442594;ZIC1..3:0.582307306407;ZBTB16:0.577894550128;POU1F1:0.571948635028;MTE{core}:0.570846937622;NKX6-1,2:0.506423334063;TFAP2{A,C}:0.501784034417;PPARG:0.500753438306;NFIL3:0.485639760345;FOX{I1,J2}:0.473313140235;POU5F1:0.392867253959;SPZ1:0.390974104122;PAX5:0.377822044479;NKX2-3_NKX2-5:0.359894011383;NR1H4:0.2920803834;TAL1_TCF{3,4,12}:0.272367825496;NKX2-1,4:0.27081087712;ELK1,4_GABP{A,B1}:0.24329321465;ATF4:0.239472417137;ZNF384:0.225511882856;HOXA9_MEIS1:0.220955478274;PAX8:0.21275931991;PAX1,9:0.211730741847;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.183887067363;NANOG{mouse}:0.150250548923;PAX6:0.143584057885;PDX1:0.0733920805246;TEF:0.0577986685287;PAX2:0.0500043575825;EBF1:0.00350159532201;MYBL2:-0.0249447353683;IRF7:-0.0346964914181;NFATC1..3:-0.0412401473132;ZEB1:-0.041547260056;CDX1,2,4:-0.0977797633043;FOXL1:-0.100015335466;GZF1:-0.136808597751;SOX5:-0.141481202869;LEF1_TCF7_TCF7L1,2:-0.167889913571;FOXQ1:-0.18077009595;ATF6:-0.184621444168;FOX{F1,F2,J1}:-0.19176896535;HIF1A:-0.222111076275;NR3C1:-0.271247764762;IRF1,2:-0.280088907383;RXR{A,B,G}:-0.290366598597;EVI1:-0.306556568236;STAT2,4,6:-0.307025828352;FOXD3:-0.308876060911;ZNF423:-0.320153395556;HNF1A:-0.321686045723;HMGA1,2:-0.323355339069;NFE2:-0.326700908515;HAND1,2:-0.383785638433;NFE2L2:-0.386477054122;SPI1:-0.39981150724;TFDP1:-0.405889647725;NFE2L1:-0.415588915075;XCPE1{core}:-0.428024964077;TLX2:-0.434537175848;PAX4:-0.441108995024;SNAI1..3:-0.447807102256;CEBPA,B_DDIT3:-0.475002265987;ONECUT1,2:-0.479789958924;ELF1,2,4:-0.501805397536;SPIB:-0.530550743981;NR5A1,2:-0.587023969512;FOSL2:-0.58737255543;TFCP2:-0.610709770217;AIRE:-0.612633320551;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.617373143311;ETS1,2:-0.707457503963;NKX2-2,8:-0.715737336455;DMAP1_NCOR{1,2}_SMARC:-0.718789398401;PBX1:-0.746621440748;HLF:-0.74707768819;RXRA_VDR{dimer}:-0.786622583292;UFEwm:-0.801809700608;IKZF1:-0.816794732828;bHLH_family:-0.8341203639;HNF4A_NR2F1,2:-0.834145877158;NFKB1_REL_RELA:-0.850149150328;TEAD1:-0.85594967517;MAFB:-0.903129247457;MYB:-0.923437246033;HMX1:-0.962643977948;BACH2:-0.971989290533;E2F1..5:-0.974467573365;XBP1:-1.01958678949;NKX3-1:-1.02870995003;SRF:-1.04343399699;FOS_FOS{B,L1}_JUN{B,D}:-1.0703044034;TFAP4:-1.10130709454;TBX4,5:-1.14455850893;TP53:-1.14601525898;RUNX1..3:-1.18323405138;HOX{A5,B5}:-1.3559989399;POU2F1..3:-1.46880632886;TBP:-1.51066493597;ZNF238:-1.56534007582;ESR1:-1.72456455274;NR6A1:-1.84187545588;GLI1..3:-2.02948925207;EN1,2:-2.41873446105;ZNF148:-2.69695490816;HES1:-3.7343175505 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10160-103A7;search_select_hide=table117:FF:10160-103A7 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | pineal gland, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12228 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12228
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12228
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.143 |
| 10 | 10 | 0.0538 |
| 100 | 100 | 0.212 |
| 101 | 101 | 0.766 |
| 102 | 102 | 0.95 |
| 103 | 103 | 0.0347 |
| 104 | 104 | 0.191 |
| 105 | 105 | 0.816 |
| 106 | 106 | 0.00426 |
| 107 | 107 | 0.00833 |
| 108 | 108 | 0.631 |
| 109 | 109 | 0.00785 |
| 11 | 11 | 0.028 |
| 110 | 110 | 0.0982 |
| 111 | 111 | 0.0415 |
| 112 | 112 | 0.791 |
| 113 | 113 | 0.437 |
| 114 | 114 | 0.308 |
| 115 | 115 | 0.654 |
| 116 | 116 | 0.292 |
| 117 | 117 | 0.031 |
| 118 | 118 | 0.0458 |
| 119 | 119 | 0.236 |
| 12 | 12 | 0.935 |
| 120 | 120 | 0.153 |
| 121 | 121 | 0.566 |
| 122 | 122 | 0.827 |
| 123 | 123 | 0.811 |
| 124 | 124 | 0.294 |
| 125 | 125 | 0.576 |
| 126 | 126 | 0.365 |
| 127 | 127 | 0.883 |
| 128 | 128 | 0.0795 |
| 129 | 129 | 0.352 |
| 13 | 13 | 0.0193 |
| 130 | 130 | 0.551 |
| 131 | 131 | 0.0668 |
| 132 | 132 | 0.506 |
| 133 | 133 | 0.0625 |
| 134 | 134 | 0.539 |
| 135 | 135 | 0.88 |
| 136 | 136 | 0.00727 |
| 137 | 137 | 0.833 |
| 138 | 138 | 0.332 |
| 139 | 139 | 0.55 |
| 14 | 14 | 0.752 |
| 140 | 140 | 0.116 |
| 141 | 141 | 0.504 |
| 142 | 142 | 0.68 |
| 143 | 143 | 0.133 |
| 144 | 144 | 0.571 |
| 145 | 145 | 0.0881 |
| 146 | 146 | 0.309 |
| 147 | 147 | 0.365 |
| 148 | 148 | 0.033 |
| 149 | 149 | 0.187 |
| 15 | 15 | 0.0338 |
| 150 | 150 | 0.192 |
| 151 | 151 | 0.462 |
| 152 | 152 | 0.0186 |
| 153 | 153 | 0.884 |
| 154 | 154 | 0.732 |
| 155 | 155 | 0.749 |
| 156 | 156 | 0.498 |
| 157 | 157 | 0.368 |
| 158 | 158 | 0.0159 |
| 159 | 159 | 0.0066 |
| 16 | 16 | 0.0526 |
| 160 | 160 | 0.0375 |
| 161 | 161 | 0.0753 |
| 162 | 162 | 0.497 |
| 163 | 163 | 0.593 |
| 164 | 164 | 0.0176 |
| 165 | 165 | 0.0505 |
| 166 | 166 | 0.819 |
| 167 | 167 | 0.412 |
| 168 | 168 | 0.588 |
| 169 | 169 | 0.019 |
| 17 | 17 | 0.0348 |
| 18 | 18 | 0.0952 |
| 19 | 19 | 0.224 |
| 2 | 2 | 0.716 |
| 20 | 20 | 0.264 |
| 21 | 21 | 0.186 |
| 22 | 22 | 0.254 |
| 23 | 23 | 0.202 |
| 24 | 24 | 0.158 |
| 25 | 25 | 0.398 |
| 26 | 26 | 4.92845e-4 |
| 27 | 27 | 0.604 |
| 28 | 28 | 0.812 |
| 29 | 29 | 0.0114 |
| 3 | 3 | 0.0927 |
| 30 | 30 | 0.807 |
| 31 | 31 | 0.867 |
| 32 | 32 | 0.0067 |
| 33 | 33 | 0.076 |
| 34 | 34 | 0.64 |
| 35 | 35 | 0.807 |
| 36 | 36 | 0.164 |
| 37 | 37 | 0.083 |
| 38 | 38 | 0.332 |
| 39 | 39 | 0.173 |
| 4 | 4 | 0.996 |
| 40 | 40 | 0.0253 |
| 41 | 41 | 0.153 |
| 42 | 42 | 0.461 |
| 43 | 43 | 0.117 |
| 44 | 44 | 0.136 |
| 45 | 45 | 0.714 |
| 46 | 46 | 0.0492 |
| 47 | 47 | 0.183 |
| 48 | 48 | 0.136 |
| 49 | 49 | 0.227 |
| 5 | 5 | 0.37 |
| 50 | 50 | 0.3 |
| 51 | 51 | 0.302 |
| 52 | 52 | 0.277 |
| 53 | 53 | 0.855 |
| 54 | 54 | 0.36 |
| 55 | 55 | 0.789 |
| 56 | 56 | 0.487 |
| 57 | 57 | 0.179 |
| 58 | 58 | 0.376 |
| 59 | 59 | 0.0546 |
| 6 | 6 | 0.686 |
| 60 | 60 | 0.0538 |
| 61 | 61 | 0.0605 |
| 62 | 62 | 0.377 |
| 63 | 63 | 0.0564 |
| 64 | 64 | 0.414 |
| 65 | 65 | 0.12 |
| 66 | 66 | 0.218 |
| 67 | 67 | 0.36 |
| 68 | 68 | 0.12 |
| 69 | 69 | 0.0411 |
| 7 | 7 | 0.168 |
| 70 | 70 | 0.00411 |
| 71 | 71 | 0.0118 |
| 72 | 72 | 0.655 |
| 73 | 73 | 0.0244 |
| 74 | 74 | 0.767 |
| 75 | 75 | 0.0639 |
| 76 | 76 | 0.282 |
| 77 | 77 | 0.159 |
| 78 | 78 | 0.0745 |
| 79 | 79 | 0.365 |
| 8 | 8 | 0.00915 |
| 80 | 80 | 0.843 |
| 81 | 81 | 0.256 |
| 82 | 82 | 0.648 |
| 83 | 83 | 0.17 |
| 84 | 84 | 0.415 |
| 85 | 85 | 0.0853 |
| 86 | 86 | 0.5 |
| 87 | 87 | 8.57144e-5 |
| 88 | 88 | 0.917 |
| 89 | 89 | 0.151 |
| 9 | 9 | 0.632 |
| 90 | 90 | 0.241 |
| 91 | 91 | 0.575 |
| 92 | 92 | 0.301 |
| 93 | 93 | 0.911 |
| 94 | 94 | 0.0702 |
| 95 | 95 | 0.015 |
| 96 | 96 | 0.767 |
| 97 | 97 | 0.698 |
| 98 | 98 | 0.205 |
| 99 | 99 | 0.477 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12228
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010160 human pineal gland - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001905 (pineal body)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002784 (regional part of diencephalon)
0002757 (regional part of epithalamus)
0010134 (secretory circumventricular organ)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005408 (circumventricular organ)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
0001899 (epithalamus)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010160 (human pineal gland - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
