FF:10027-101D9: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	thymus, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10633
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thymus
dev stage	0.5,0.5,0.83 years old infant
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -18
catalog number	Cat:AM6000 Lot:0910061 -18
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005063

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10633		CAGE		DRX008745		DRR009617

Accession ID Hg19

Library id		BAM		CTSS
CNhs10633		DRZ001042		DRZ002427

Accession ID Hg38

Library id		BAM		CTSS
CNhs10633		DRZ012392		DRZ013777

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0272
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.521
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.0272
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0.384
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0272
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0272
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0272
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.142
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.314
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.496
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.379
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.294
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.13
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0272
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.58
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0272
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0769
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00271
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0769
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	1.141
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.474
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0557
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0272
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0769
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0332
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.322
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0.646
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0178
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.445
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.249
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0272
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0239
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.141
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0272
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0998
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0528
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0.0272
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0528
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.676
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.0272
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0272
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0528
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10633

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.54087e-4
MA0003.1	MA0003.1	0.889
MA0004.1	MA0004.1	0.359
MA0006.1	MA0006.1	0.808
MA0007.1	MA0007.1	0.36
MA0009.1	MA0009.1	0.677
MA0014.1	MA0014.1	0.351
MA0017.1	MA0017.1	0.72
MA0018.2	MA0018.2	0.674
MA0019.1	MA0019.1	0.142
MA0024.1	MA0024.1	1.27421e-6
MA0025.1	MA0025.1	0.17
MA0027.1	MA0027.1	0.56
MA0028.1	MA0028.1	1.33366e-4
MA0029.1	MA0029.1	0.866
MA0030.1	MA0030.1	0.267
MA0031.1	MA0031.1	0.0296
MA0035.2	MA0035.2	0.252
MA0038.1	MA0038.1	0.427
MA0039.2	MA0039.2	0.416
MA0040.1	MA0040.1	0.615
MA0041.1	MA0041.1	0.413
MA0042.1	MA0042.1	0.465
MA0043.1	MA0043.1	0.113
MA0046.1	MA0046.1	0.732
MA0047.2	MA0047.2	0.274
MA0048.1	MA0048.1	0.00149
MA0050.1	MA0050.1	2.40014e-6
MA0051.1	MA0051.1	0.0174
MA0052.1	MA0052.1	0.184
MA0055.1	MA0055.1	0.00366
MA0057.1	MA0057.1	0.38
MA0058.1	MA0058.1	0.455
MA0059.1	MA0059.1	0.0658
MA0060.1	MA0060.1	7.85189e-8
MA0061.1	MA0061.1	0.462
MA0062.2	MA0062.2	8.50662e-16
MA0065.2	MA0065.2	0.486
MA0066.1	MA0066.1	0.727
MA0067.1	MA0067.1	0.173
MA0068.1	MA0068.1	0.0341
MA0069.1	MA0069.1	0.668
MA0070.1	MA0070.1	0.314
MA0071.1	MA0071.1	0.198
MA0072.1	MA0072.1	0.838
MA0073.1	MA0073.1	0.21
MA0074.1	MA0074.1	0.052
MA0076.1	MA0076.1	5.32292e-9
MA0077.1	MA0077.1	0.859
MA0078.1	MA0078.1	0.688
MA0079.2	MA0079.2	0.361
MA0080.2	MA0080.2	6.92855e-11
MA0081.1	MA0081.1	0.014
MA0083.1	MA0083.1	0.00432
MA0084.1	MA0084.1	0.71
MA0087.1	MA0087.1	0.804
MA0088.1	MA0088.1	0.351
MA0090.1	MA0090.1	4.44909e-4
MA0091.1	MA0091.1	0.37
MA0092.1	MA0092.1	0.649
MA0093.1	MA0093.1	0.407
MA0099.2	MA0099.2	9.54013e-16
MA0100.1	MA0100.1	1.59558e-4
MA0101.1	MA0101.1	0.693
MA0102.2	MA0102.2	0.276
MA0103.1	MA0103.1	4.43103e-4
MA0104.2	MA0104.2	0.955
MA0105.1	MA0105.1	0.725
MA0106.1	MA0106.1	0.0555
MA0107.1	MA0107.1	0.928
MA0108.2	MA0108.2	0.262
MA0111.1	MA0111.1	0.494
MA0112.2	MA0112.2	0.0181
MA0113.1	MA0113.1	0.673
MA0114.1	MA0114.1	0.187
MA0115.1	MA0115.1	0.869
MA0116.1	MA0116.1	0.382
MA0117.1	MA0117.1	0.644
MA0119.1	MA0119.1	0.0166
MA0122.1	MA0122.1	0.344
MA0124.1	MA0124.1	0.308
MA0125.1	MA0125.1	0.494
MA0131.1	MA0131.1	0.427
MA0135.1	MA0135.1	0.546
MA0136.1	MA0136.1	1.27867e-14
MA0137.2	MA0137.2	0.0269
MA0138.2	MA0138.2	0.708
MA0139.1	MA0139.1	0.268
MA0140.1	MA0140.1	0.845
MA0141.1	MA0141.1	0.00217
MA0142.1	MA0142.1	0.587
MA0143.1	MA0143.1	0.1
MA0144.1	MA0144.1	0.345
MA0145.1	MA0145.1	0.102
MA0146.1	MA0146.1	0.242
MA0147.1	MA0147.1	0.681
MA0148.1	MA0148.1	0.952
MA0149.1	MA0149.1	0.201
MA0150.1	MA0150.1	1.70295e-5
MA0152.1	MA0152.1	0.0595
MA0153.1	MA0153.1	0.381
MA0154.1	MA0154.1	0.548
MA0155.1	MA0155.1	0.518
MA0156.1	MA0156.1	3.23827e-17
MA0157.1	MA0157.1	0.152
MA0159.1	MA0159.1	0.384
MA0160.1	MA0160.1	0.142
MA0162.1	MA0162.1	0.245
MA0163.1	MA0163.1	0.823
MA0164.1	MA0164.1	0.448
MA0258.1	MA0258.1	0.105
MA0259.1	MA0259.1	0.703

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10633

Novel motif	Logo	P-value
1	1	0.417
10	10	0.805
100	100	0.174
101	101	0.978
102	102	0.837
103	103	0.612
104	104	0.804
105	105	0.568
106	106	0.087
107	107	0.179
108	108	0.243
109	109	0.376
11	11	0.782
110	110	0.249
111	111	0.254
112	112	0.8
113	113	0.585
114	114	0.00672
115	115	0.508
116	116	0.336
117	117	0.225
118	118	0.136
119	119	0.239
12	12	0.58
120	120	0.82
121	121	0.11
122	122	0.336
123	123	0.199
124	124	0.228
125	125	0.349
126	126	0.664
127	127	0.36
128	128	0.464
129	129	0.35
13	13	0.181
130	130	0.00603
131	131	0.925
132	132	0.842
133	133	0.98
134	134	0.853
135	135	0.047
136	136	0.501
137	137	0.194
138	138	0.533
139	139	0.331
14	14	0.687
140	140	0.0406
141	141	0.522
142	142	0.238
143	143	0.201
144	144	0.786
145	145	0.508
146	146	0.138
147	147	0.115
148	148	0.88
149	149	0.303
15	15	0.621
150	150	0.699
151	151	0.834
152	152	0.0377
153	153	0.909
154	154	0.353
155	155	0.115
156	156	0.251
157	157	0.0393
158	158	0.621
159	159	0.102
16	16	0.392
160	160	0.628
161	161	0.521
162	162	0.387
163	163	0.219
164	164	0.104
165	165	0.898
166	166	0.387
167	167	0.425
168	168	0.093
169	169	0.02
17	17	0.284
18	18	0.183
19	19	0.0127
2	2	0.203
20	20	0.0318
21	21	0.948
22	22	0.13
23	23	0.182
24	24	0.963
25	25	0.247
26	26	0.859
27	27	0.018
28	28	0.823
29	29	0.599
3	3	0.765
30	30	0.361
31	31	0.392
32	32	0.00905
33	33	0.497
34	34	0.91
35	35	0.581
36	36	0.471
37	37	0.0728
38	38	0.78
39	39	0.158
4	4	0.852
40	40	0.172
41	41	0.892
42	42	0.559
43	43	0.592
44	44	0.35
45	45	0.729
46	46	0.571
47	47	0.893
48	48	0.633
49	49	0.524
5	5	0.413
50	50	0.809
51	51	0.97
52	52	0.311
53	53	0.978
54	54	0.498
55	55	0.805
56	56	0.976
57	57	0.0576
58	58	0.325
59	59	0.59
6	6	0.47
60	60	0.57
61	61	0.208
62	62	0.379
63	63	0.507
64	64	0.746
65	65	0.433
66	66	0.683
67	67	0.24
68	68	0.44
69	69	0.599
7	7	0.74
70	70	0.107
71	71	0.297
72	72	0.0289
73	73	0.00672
74	74	0.713
75	75	0.809
76	76	0.12
77	77	0.0938
78	78	0.862
79	79	0.339
8	8	0.0638
80	80	8.08091e-5
81	81	0.706
82	82	0.799
83	83	0.791
84	84	0.334
85	85	0.0207
86	86	0.505
87	87	0.527
88	88	0.117
89	89	0.274
9	9	0.368
90	90	0.505
91	91	0.925
92	92	0.251
93	93	0.703
94	94	0.902
95	95	0.532
96	96	0.1
97	97	0.537
98	98	0.193
99	99	0.242

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10633

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010027 thymus - adult human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002370 (thymus)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0004177 (hemopoietic organ)
0005057 (immune organ)
0002530 (gland)
0005058 (hemolymphoid system gland)
0010317 (germ layer / neural crest derived structure)
0000153 (anterior region of body)
0002390 (hematopoietic system)
0000949 (endocrine system)
0002193 (hemolymphoid system)
0002405 (immune system)
0009113 (thymic region)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010027 (thymus - adult human sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008635
+|DRA_sample_Accession=CAGE@SAMD00005063
-|accession_numbers=CAGE;DRX008745;DRR009617;DRZ001042;DRZ002427
+|accession_numbers=CAGE;DRX008745;DRR009617;DRZ001042;DRZ002427;DRZ012392;DRZ013777
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002370,UBERON:0000479,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0004177,UBERON:0005057,UBERON:0002530,UBERON:0005058,UBERON:0010317,UBERON:0000153,UBERON:0002390,UBERON:0000949,UBERON:0002193,UBERON:0002405,UBERON:0009113
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:133451294..133451310,+!p2@TCF7!2.76!580.07!TCF7;;chr4:109090075..109090095,-!p2@LEF1!2.42!260.42!LEF1;;chr3:18486354..18486377,-!p2@SATB1!2.33!264.04!SATB1;;chr4:109087445..109087463,-!p1@LEF1!2.20!157.53!LEF1;;chr3:18480217..18480239,-!p3@SATB1!2.07!115.81!SATB1;;chr1:151798546..151798590,-!p2@RORC!2.04!107.73!RORC;;chr8:60031619..60031676,-!p1@TOX!2.01!209.66!TOX;;chr5:133450365..133450444,+!p1@TCF7!1.98!408.72!TCF7;;chr5:133451347..133451358,+!p3@TCF7!1.92!81.64!TCF7;;chr7:50343634..50343717,+!p2@IKZF1!1.90!78.93!IKZF1;;chr17:37934365..37934387,-!p2@IKZF3!1.87!72.66!IKZF3;;chr20:21686317..21686350,+!p1@PAX1!1.87!72.60!PAX1;;chr6:135502501..135502546,+!p1@MYB!1.77!69.37!MYB;;chr16:85932760..85932775,+!p1@IRF8!1.72!51.80!IRF8;;chr6:135502408..135502459,+!p2@MYB!1.71!58.00!MYB;;chr3:18487057..18487105,-!p4@SATB1!1.71!50.77!SATB1;;chr16:68119324..68119364,+!p1@NFATC3!1.68!199.58!NFATC3;;chr3:63953435..63953499,+!p1@ATXN7!1.68!46.57!ATXN7;;chr10:8096772..8096787,+!p2@GATA3!1.67!53.22!GATA3;;chr7:50344251..50344288,+!p3@IKZF1!1.66!45.15!IKZF1;;chr4:109090054..109090073,-!p7@LEF1!1.65!43.21!LEF1;;chr21:36421535..36421610,-!p2@RUNX1!1.61!136.41!RUNX1;;chr1:23857698..23857733,-!p1@E2F2!1.60!69.89!E2F2;;chr3:141868293..141868355,-!p2@TFDP2!1.59!318.10!TFDP2;;chr13:41593425..41593480,-!p1@ELF1!1.59!231.42!ELF1;;chr10:8096631..8096660,+!p1@GATA3!1.58!43.99!GATA3;;chr4:109089901..109089930,-!p3@LEF1!1.58!37.20!LEF1;;chrY:21906594..21906622,-!p1@KDM5D!1.56!35.14!KDM5D;;chr2:214015111..214015179,-!p1@IKZF2!1.54!59.74!IKZF2;;chr4:109087906..109087928,-!p12@LEF1!1.51!31.39!LEF1;;chr3:18480173..18480189,-!p6@SATB1!1.50!30.36!SATB1;;chr9:117150254..117150271,-!p1@AKNA!1.48!78.67!AKNA;;chr2:60778035..60778060,-!p4@BCL11A!1.48!34.88!BCL11A;;chr2:214014959..214015006,-!p4@IKZF2!1.48!29.07!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!1.47!28.35!GFI1;;chr11:128392309..128392350,-!p3@ETS1!1.46!65.11!ETS1;;chr4:109088940..109089037,-!p4@LEF1!1.45!27.45!LEF1;;chr11:128392273..128392308,-!p2@ETS1!1.44!109.03!ETS1;;chr7:50343895..50343936,+!p5@IKZF1!1.44!26.29!IKZF1;;chr2:100759010..100759035,-!p1@AFF3!1.43!25.90!AFF3;;chr7:50348268..50348366,+!p4@IKZF1!1.43!25.71!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.42!25.32!BCL11A;;chr4:109090106..109090124,-!p10@LEF1!1.42!25.32!LEF1;;chr3:111314186..111314204,-!p1@ZBED2!1.41!24.87!ZBED2;;chr6:391743..391759,+!p1@IRF4!1.41!24.87!IRF4;;chr4:109089996..109090012,-!p5@LEF1!1.41!24.54!LEF1;;chr5:133477905..133477956,+!p5@TCF7!1.40!24.03!TCF7;;chr7:50344289..50344323,+!p1@IKZF1!1.39!23.70!IKZF1;;chr15:57210961..57211012,+!p3@TCF12!1.37!70.40!TCF12;;chr11:47400078..47400106,-!p1@SPI1!1.36!22.09!SPI1;;chr6:91006518..91006570,-!p1@BACH2!1.34!46.76!BACH2;;chr4:109086281..109086319,-!p9@LEF1!1.33!20.41!LEF1;;chr4:109086321..109086357,-!p16@LEF1!1.32!20.02!LEF1;;chr2:100759037..100759058,-!p2@AFF3!1.32!19.89!AFF3;;chr3:71355163..71355209,-!p5@FOXP1!1.31!27.06!FOXP1;;chr4:109086403..109086421,-!p19@LEF1!1.29!18.54!LEF1;;chr2:214013461..214013517,-!p6@IKZF2!1.29!18.47!IKZF2;;chr4:109089573..109089585,-!p8@LEF1!1.29!18.47!LEF1;;chr14:37131058..37131139,+!p1@PAX9!1.29!18.34!PAX9;;chr20:42543441..42543497,+!p1@TOX2!1.28!79.64!TOX2;;chr5:133473765..133473784,+!p7@TCF7!1.28!18.15!TCF7;;chr9:1050331..1050363,+!p1@DMRT2!1.27!17.70!DMRT2;;chr3:141747459..141747475,-!p1@TFDP2!1.25!135.44!TFDP2;;chr19:50922187..50922204,+!p1@SPIB!1.25!16.86!SPIB;;chr20:42574529..42574563,+!p3@TOX2!1.23!16.15!TOX2;;chr1:23857674..23857685,-!p3@E2F2!1.22!15.63!E2F2;;chr9:77112244..77112262,+!p1@RORB!1.20!16.47!RORB;;chr8:60031563..60031574,-!p7@TOX!1.19!14.53!TOX;;chr4:109087885..109087899,-!p23@LEF1!1.17!13.95!LEF1;;chr2:68592406..68592424,+!p1@PLEK!1.17!13.82!PLEK;;chr20:21686290..21686311,+!p2@PAX1!1.16!13.56!PAX1;;chr4:109089436..109089456,-!p22@LEF1!1.16!13.43!LEF1;;chr5:133450458..133450469,+!p4@TCF7!1.15!13.05!TCF7;;chr3:33482052..33482116,-!p2@UBP1!1.13!19.31!UBP1;;chr3:189507432..189507459,+!p1@TP63!1.13!12.59!TP63;;chr15:57025732..57025743,-!p6@ZNF280D!1.13!12.47!ZNF280D;;chr6:135502472..135502489,+!p3@MYB!1.13!12.47!MYB;;chrX:49121165..49121179,-!p1@FOXP3!1.13!12.34!FOXP3;;chr7:44143925..44143970,+!p1@AEBP1!1.12!269.01!AEBP1;;chr2:214015343..214015366,-!p3@IKZF2!1.12!12.14!IKZF2;;chr2:42795745..42795824,+!p1@MTA3!1.11!110.06!MTA3;;chr11:111249993..111250006,-!p1@POU2AF1!1.11!11.76!POU2AF1;;chr1:92951607..92951661,-!p1@GFI1!1.10!11.69!GFI1;;chr5:133473746..133473764,+!p12@TCF7!1.10!11.56!TCF7;;chr19:19779619..19779670,+!p1@ZNF101!1.09!31.97!ZNF101;;chr2:100758991..100759009,-!p3@AFF3!1.09!11.43!AFF3;;chr17:38020516..38020544,-!p5@IKZF3!1.09!11.37!IKZF3;;chr20:50159198..50159299,-!p1@NFATC2!1.08!16.15!NFATC2;;chr3:71179699..71179744,-!p2@FOXP1!1.07!81.64!FOXP1;;chr19:36389729..36389751,-!p3@NFKBID!1.06!10.59!NFKBID;;chr3:18466787..18466839,-!p1@SATB1!1.05!45.99!SATB1;;chr1:209979467..209979494,-!p1@IRF6!1.05!11.56!IRF6;;chr20:52226313..52226350,-!p3@ZNF217!1.05!10.21!ZNF217;;chr10:8095593..8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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002370;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004177;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520adult%252c%2520pool1.CNhs10633.10027-101D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520adult%252c%2520pool1.CNhs10633.10027-101D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thymus%252c%2520adult%252c%2520pool1.CNhs10633.10027-101D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520adult%252c%2520pool1.CNhs10633.10027-101D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thymus%252c%2520adult%252c%2520pool1.CNhs10633.10027-101D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10027-101D9
 |is_a=EFO:0002091;;FF:0010027
 |is_obsolete=
 |library_id=CNhs10633
+|library_id_phase_based=2:CNhs10633
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10027
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10027
 |name=thymus, adult, pool1
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10633,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10027-101D9;search_select_hide=table117:FF:10027-101D9
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FF:10027-101D9: Difference between revisions

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Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0