FFCP PHASE1:Hg19::chr17:46703528..46703549,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:46703528..46703549,- to FFCP PHASE1:Hg19::chr17:46703528..46703549,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3219 | |EntrezGene=3219 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5120 | |HGNC=5120 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=64bp_to_AK056123_5end | |||
|cluster_id=chr17:46703528..46703549,- | |||
|description=CAGE_peak_5_at_HOXB9_5end | |||
|id=chr17:46703528..46703549,- | |||
|ontology_enrichment_celltype=CL:0000066!6.16e-19!254;CL:1000497!6.28e-15!18;CL:0002518!6.28e-15!18;CL:1000449!2.65e-13!16;CL:1000507!7.13e-12!12;CL:1000494!7.13e-12!12;CL:0002681!3.96e-10!13;CL:0002584!3.96e-10!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.09e-21;10!CL:1000494;1.09e-21;10!CL:1000497;3.23e-20;17!CL:0002518;3.23e-20;17!CL:1000449;7.81e-20;15!CL:0002681;3.51e-14;12!CL:0002584;3.51e-14;12!CL:0000239;4.77e-08;3!CL:1000615;4.77e-08;3!CL:0002306;4.77e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.06e-21,10;CL:1000494,1.06e-21,10;CL:1000497,3.20e-20,17;CL:0002518,3.20e-20,17;CL:1000449,8.28e-20,15;CL:0002681,3.78e-14,12;CL:0002584,3.78e-14,12;CL:0000066,1.71e-10,253;CL:0000239,4.48e-08,3;CL:1000615,4.48e-08,3;CL:0002306,4.48e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.52e-09;10!UBERON:0007687;1.52e-09;10 | |||
|ontology_enrichment_disease=DOID:14566!2.44e-27!239;DOID:162!9.73e-27!235;DOID:0050687!2.68e-24!143;DOID:305!7.51e-18!106;DOID:1749!1.56e-07!14;DOID:0050615!2.42e-07!16;DOID:1324!6.59e-07!15 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.14e-14,239;DOID:162,2.19e-13,235;DOID:0050687,2.15e-11,143;DOID:305,6.24e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000489!3.02e-23!32;UBERON:0001008!3.74e-22!45;UBERON:0006554!1.71e-21!44;UBERON:0002113!2.51e-19!27;UBERON:0003918!2.51e-19!27;UBERON:0005095!2.51e-19!27;UBERON:0007687!2.51e-19!27;UBERON:0000080!2.38e-15!18;UBERON:0002120!2.38e-15!18;UBERON:0004875!2.38e-15!18;UBERON:0005721!2.38e-15!18;UBERON:0005754!2.38e-15!18;UBERON:0007297!2.38e-15!18;UBERON:0000058!4.55e-15!26;UBERON:0002417!1.32e-14!61;UBERON:0000916!1.32e-14!61;UBERON:0006555!3.31e-14!17;UBERON:0005103!3.31e-14!17;UBERON:0000083!3.31e-14!17;UBERON:0009201!3.31e-14!17;UBERON:0004819!3.31e-14!17;UBERON:0006553!3.31e-14!17;UBERON:0003074!3.31e-14!17;UBERON:0003060!3.31e-14!17;UBERON:0003064!6.42e-14!37;UBERON:0005177!1.86e-13!107;UBERON:0004211!2.65e-13!16;UBERON:0001285!2.65e-13!16;UBERON:0007684!2.65e-13!16;UBERON:0003220!2.65e-13!16;UBERON:0004208!2.65e-13!16;UBERON:0004876!3.16e-13!20;UBERON:0005172!9.16e-13!55;UBERON:0005173!9.16e-13!55;UBERON:0003887!2.53e-12!21;UBERON:0009773!7.13e-12!12;UBERON:0001231!7.13e-12!12;UBERON:0004810!7.13e-12!12;UBERON:0001851!1.58e-10!16;UBERON:0001225!3.96e-10!13;UBERON:0008987!3.96e-10!13;UBERON:0003886!1.63e-09!63;UBERON:0000353!1.97e-09!17;UBERON:0009569!2.42e-09!113;UBERON:0002553!3.28e-08!70;UBERON:0000464!3.58e-08!104;UBERON:0000466!1.26e-07!126;UBERON:0005910!9.21e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.25e-29;30!UBERON:0001008;1.25e-29;30!UBERON:0000489;5.02e-28;29!UBERON:0002113;1.22e-25;24!UBERON:0011143;1.22e-25;24!UBERON:0004211;1.09e-21;10!UBERON:0009773;1.09e-21;10!UBERON:0001231;1.09e-21;10!UBERON:0004810;1.09e-21;10!UBERON:0006555;7.81e-20;15!UBERON:0004819;7.81e-20;15!UBERON:0001285;7.81e-20;15!UBERON:0007684;7.81e-20;15!UBERON:0001225;3.51e-14;12!UBERON:0008987;3.51e-14;12!UBERON:0001851;2.94e-13;15!UBERON:0000353;6.27e-11;15!UBERON:0005172;2.34e-09;52!UBERON:0005173;2.34e-09;52!UBERON:0002417;5.55e-09;58!UBERON:0000916;5.55e-09;58!UBERON:0006853;4.77e-08;3!UBERON:0007685;4.77e-08;3!UBERON:0004134;4.77e-08;3!UBERON:0006947;1.68e-07;3!UBERON:0004054;1.68e-07;3!UBERON:0003103;8.78e-07;61!UBERON:0000365;9.55e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.67e-31,31;UBERON:0002113,3.63e-29,26;UBERON:0003918,3.63e-29,26;UBERON:0011143,3.63e-29,26;UBERON:0005095,3.63e-29,26;UBERON:0007687,3.63e-29,26;UBERON:0004810,1.06e-21,10;UBERON:0006555,1.94e-21,16;UBERON:0004819,1.94e-21,16;UBERON:0006554,2.82e-20,47;UBERON:0004211,8.28e-20,15;UBERON:0009773,8.28e-20,15;UBERON:0001231,8.28e-20,15;UBERON:0001285,8.28e-20,15;UBERON:0007684,8.28e-20,15;UBERON:0004208,8.28e-20,15;UBERON:0001008,1.05e-19,48;UBERON:0002417,1.52e-18,60;UBERON:0000916,1.52e-18,60;UBERON:0005172,4.63e-15,54;UBERON:0005173,4.63e-15,54;UBERON:0001225,3.78e-14,12;UBERON:0008987,3.78e-14,12;UBERON:0005177,4.66e-14,101;UBERON:0001851,3.07e-13,15;UBERON:0009569,1.40e-12,112;UBERON:0000353,6.63e-11,15;UBERON:0003103,9.39e-11,68;UBERON:0000080,1.98e-08,9;UBERON:0002120,1.98e-08,9;UBERON:0004875,1.98e-08,9;UBERON:0005721,1.98e-08,9;UBERON:0005754,1.98e-08,9;UBERON:0007297,1.98e-08,9;UBERON:0006853,4.48e-08,3;UBERON:0007685,4.48e-08,3;UBERON:0004134,4.48e-08,3;UBERON:0000058,5.31e-08,19;UBERON:0006947,1.20e-07,3;UBERON:0004054,1.20e-07,3;UBERON:0000365,8.18e-07,5;UBERON:0004876,9.70e-07,11 | |||
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| ||
|short_description=p5@HOXB9 | |||
}} | }} |
Latest revision as of 07:37, 25 September 2015
Short description: | p5@HOXB9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HOXB9_5end |
Coexpression cluster: | NA |
Association with transcript: | 64bp_to_AK056123_5end |
EntrezGene: | HOXB9 |
HGNC: | 5120 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.06e-21 | 10 |
nephron tubule epithelial cell | 1.06e-21 | 10 |
kidney cell | 3.20e-20 | 17 |
kidney epithelial cell | 3.20e-20 | 17 |
epithelial cell of nephron | 8.28e-20 | 15 |
kidney cortical cell | 3.78e-14 | 12 |
renal cortical epithelial cell | 3.78e-14 | 12 |
epithelial cell | 1.71e-10 | 253 |
brush border epithelial cell | 4.48e-08 | 3 |
kidney cortex tubule cell | 4.48e-08 | 3 |
epithelial cell of proximal tubule | 4.48e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.14e-14 | 239 |
cancer | 2.19e-13 | 235 |
cell type cancer | 2.15e-11 | 143 |
carcinoma | 6.24e-07 | 106 |