FFCP PHASE1:Hg19::chr3:195542423..195542435,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:195542423..195542435,- to FFCP PHASE1:Hg19::chr3:195542423..195542435,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:195542423..195542435,- | |||
|description=CAGE_peak_at_chr3:195542423..195542435,- | |||
|id=chr3:195542423..195542435,- | |||
|ontology_enrichment_celltype=CL:0000066!3.67e-13!254;CL:1000497!5.50e-13!18;CL:0002518!5.50e-13!18;CL:1000507!1.81e-12!12;CL:1000494!1.81e-12!12;CL:1000449!7.31e-12!16;CL:1000415!7.62e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:1000415;8.80e-18;2!CL:1000449;1.04e-13;15!CL:1000507;1.68e-13;10!CL:1000494;1.68e-13;10!CL:0000239;3.19e-12;3!CL:1000615;3.19e-12;3!CL:0002306;3.19e-12;3!CL:1000497;4.41e-12;17!CL:0002518;4.41e-12;17!CL:0000322;5.27e-12;3!CL:0002681;2.20e-11;12!CL:0002584;2.20e-11;12!CL:0000319;7.83e-10;1!CL:0000082;3.92e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,9.58e-18,2;CL:1000449,1.03e-13,15;CL:1000507,1.66e-13,10;CL:1000494,1.66e-13,10;CL:0000239,3.01e-12,3;CL:1000615,3.01e-12,3;CL:0002306,3.01e-12,3;CL:1000497,4.36e-12,17;CL:0002518,4.36e-12,17;CL:0000322,4.99e-12,3;CL:0002681,2.20e-11,12;CL:0002584,2.20e-11,12;CL:0000319,8.17e-10,1;CL:0000066,1.27e-08,253;CL:0000082,3.92e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.60e-07;29 | |||
|ontology_enrichment_disease=DOID:305!8.29e-19!106;DOID:0050687!4.41e-14!143;DOID:1749!5.99e-13!14;DOID:299!6.48e-09!25;DOID:4468!3.04e-07!2;DOID:162!9.40e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:299;1.13e-11;25!DOID:3030;7.83e-10;1!DOID:3111;1.61e-09;1!DOID:3603;1.61e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.13e-11,25;DOID:305,4.47e-11,106;DOID:3030,8.17e-10,1;DOID:3111,1.48e-09,1;DOID:3603,1.48e-09,1;DOID:0050687,1.26e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0000058!9.07e-16!26;UBERON:0000464!7.03e-13!104;UBERON:0000466!7.06e-13!126;UBERON:0009773!1.81e-12!12;UBERON:0001231!1.81e-12!12;UBERON:0004810!1.81e-12!12;UBERON:0002294!4.27e-12!7;UBERON:0001173!4.27e-12!7;UBERON:0004912!4.27e-12!7;UBERON:0004211!7.31e-12!16;UBERON:0001285!7.31e-12!16;UBERON:0007684!7.31e-12!16;UBERON:0003220!7.31e-12!16;UBERON:0004208!7.31e-12!16;UBERON:0006555!4.45e-11!17;UBERON:0005103!4.45e-11!17;UBERON:0000083!4.45e-11!17;UBERON:0009201!4.45e-11!17;UBERON:0004819!4.45e-11!17;UBERON:0006553!4.45e-11!17;UBERON:0003074!4.45e-11!17;UBERON:0003060!4.45e-11!17;UBERON:0005177!5.59e-11!107;UBERON:0000077!1.07e-10!130;UBERON:0000080!2.21e-10!18;UBERON:0002120!2.21e-10!18;UBERON:0004875!2.21e-10!18;UBERON:0005721!2.21e-10!18;UBERON:0005754!2.21e-10!18;UBERON:0007297!2.21e-10!18;UBERON:0002113!7.58e-10!27;UBERON:0003918!7.58e-10!27;UBERON:0005095!7.58e-10!27;UBERON:0007687!7.58e-10!27;UBERON:0000489!9.95e-10!32;UBERON:0004119!1.03e-09!169;UBERON:0000925!1.03e-09!169;UBERON:0006595!1.03e-09!169;UBERON:0001007!1.82e-09!155;UBERON:0001555!1.82e-09!155;UBERON:0007026!1.82e-09!155;UBERON:0004876!3.38e-09!20;UBERON:0006554!4.77e-09!44;UBERON:0001008!8.77e-09!45;UBERON:0000344!1.05e-08!12;UBERON:0003887!1.08e-08!21;UBERON:0001004!1.79e-08!72;UBERON:0002394!2.63e-08!4;UBERON:0003928!2.63e-08!4;UBERON:0009569!3.75e-08!113;UBERON:0003064!4.53e-08!37;UBERON:0001041!5.28e-08!98;UBERON:0003127!6.46e-08!2;UBERON:0004921!7.47e-08!129;UBERON:0004185!7.47e-08!129;UBERON:0003104!1.52e-07!238;UBERON:0009142!1.52e-07!238;UBERON:0005178!1.62e-07!34;UBERON:0002224!1.62e-07!34;UBERON:0000974!2.50e-07!10;UBERON:0005181!3.03e-07!35;UBERON:0003343!4.56e-07!4;UBERON:0004785!4.56e-07!4;UBERON:0002553!7.37e-07!70;UBERON:0000161!9.53e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;9.47e-20;7!UBERON:0001173;9.47e-20;7!UBERON:0003127;7.43e-18;2!UBERON:0006555;1.04e-13;15!UBERON:0004819;1.04e-13;15!UBERON:0001285;1.04e-13;15!UBERON:0007684;1.04e-13;15!UBERON:0004211;1.68e-13;10!UBERON:0009773;1.68e-13;10!UBERON:0001231;1.68e-13;10!UBERON:0004810;1.68e-13;10!UBERON:0006853;3.19e-12;3!UBERON:0007685;3.19e-12;3!UBERON:0004134;3.19e-12;3!UBERON:0002110;3.57e-12;3!UBERON:0004821;5.27e-12;3!UBERON:0007499;5.27e-12;3!UBERON:0003215;5.27e-12;3!UBERON:0010368;5.27e-12;3!UBERON:0009911;5.27e-12;3!UBERON:0002299;5.27e-12;3!UBERON:0006524;5.27e-12;3!UBERON:0008874;5.27e-12;3!UBERON:0002169;5.27e-12;3!UBERON:0004894;5.27e-12;3!UBERON:0001225;2.20e-11;12!UBERON:0008987;2.20e-11;12!UBERON:0004913;5.79e-10;1!UBERON:0003703;5.79e-10;1!UBERON:0001174;5.79e-10;1!UBERON:0004914;5.79e-10;1!UBERON:0002372;1.15e-09;1!UBERON:0001961;1.15e-09;1!UBERON:0001744;1.15e-09;1!UBERON:0001042;1.15e-09;1!UBERON:0001735;1.15e-09;1!UBERON:0002394;1.20e-09;4!UBERON:0003928;1.20e-09;4!UBERON:0000997;2.36e-09;1!UBERON:0005056;2.36e-09;1!UBERON:0004176;2.36e-09;1!UBERON:0009856;3.16e-09;4!UBERON:0001851;3.87e-09;15!UBERON:0000353;3.87e-09;15!UBERON:0007196;4.04e-09;15!UBERON:0001558;4.04e-09;15!UBERON:0002113;1.64e-08;24!UBERON:0011143;1.64e-08;24!UBERON:0000058;2.48e-08;10!UBERON:0005177;6.39e-08;99!UBERON:0005178;3.86e-07;34!UBERON:0002224;3.86e-07;34!UBERON:0004802;3.92e-07;19!UBERON:0000115;3.92e-07;19!UBERON:0000489;5.19e-07;29!UBERON:0006554;9.03e-07;30!UBERON:0001008;9.03e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,6.27e-18,2;UBERON:0002294,2.13e-15,9;UBERON:0001173,2.13e-15,9;UBERON:0004912,2.13e-15,9;UBERON:0004211,1.03e-13,15;UBERON:0009773,1.03e-13,15;UBERON:0001231,1.03e-13,15;UBERON:0001285,1.03e-13,15;UBERON:0007684,1.03e-13,15;UBERON:0004208,1.03e-13,15;UBERON:0004810,1.66e-13,10;UBERON:0006555,7.52e-13,16;UBERON:0004819,7.52e-13,16;UBERON:0006853,3.01e-12,3;UBERON:0007685,3.01e-12,3;UBERON:0004134,3.01e-12,3;UBERON:0002110,3.77e-12,3;UBERON:0006242,3.77e-12,3;UBERON:0004821,4.99e-12,3;UBERON:0003215,4.99e-12,3;UBERON:0010368,4.99e-12,3;UBERON:0009911,4.99e-12,3;UBERON:0002299,4.99e-12,3;UBERON:0006524,4.99e-12,3;UBERON:0008874,4.99e-12,3;UBERON:0002169,4.99e-12,3;UBERON:0004894,4.99e-12,3;UBERON:0005177,1.27e-11,101;UBERON:0001225,2.20e-11,12;UBERON:0008987,2.20e-11,12;UBERON:0009569,2.92e-10,112;UBERON:0004913,5.79e-10,1;UBERON:0003703,5.79e-10,1;UBERON:0001174,5.79e-10,1;UBERON:0004914,5.79e-10,1;UBERON:0002372,1.06e-09,1;UBERON:0001961,1.06e-09,1;UBERON:0001744,1.06e-09,1;UBERON:0001735,1.06e-09,1;UBERON:0000997,2.67e-09,1;UBERON:0005056,2.67e-09,1;UBERON:0007196,3.79e-09,15;UBERON:0001558,3.79e-09,15;UBERON:0001851,3.87e-09,15;UBERON:0000353,3.87e-09,15;UBERON:0005178,2.39e-08,34;UBERON:0002224,2.39e-08,34;UBERON:0005181,4.28e-08,35;UBERON:0001041,4.98e-08,87;UBERON:0000072,6.54e-08,47;UBERON:0002113,7.60e-08,26;UBERON:0003918,7.60e-08,26;UBERON:0011143,7.60e-08,26;UBERON:0005095,7.60e-08,26;UBERON:0007687,7.60e-08,26;UBERON:0008947,2.04e-07,38;UBERON:0003258,2.04e-07,38;UBERON:0000058,2.19e-07,19;UBERON:0004802,3.92e-07,19;UBERON:0000115,3.92e-07,19;UBERON:0003914,7.74e-07,117;UBERON:0005172,8.65e-07,54;UBERON:0005173,8.65e-07,54;UBERON:0000065,8.73e-07,54;UBERON:0002100,8.82e-07,199 | |||
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| ||
|short_description=p@chr3:195542423..195542435,- | |||
}} | }} |
Latest revision as of 19:46, 29 July 2015
Short description: | p@chr3:195542423..195542435, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:195542423..195542435, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 9.58e-18 | 2 |
epithelial cell of nephron | 1.03e-13 | 15 |
kidney tubule cell | 1.66e-13 | 10 |
nephron tubule epithelial cell | 1.66e-13 | 10 |
brush border epithelial cell | 3.01e-12 | 3 |
kidney cortex tubule cell | 3.01e-12 | 3 |
epithelial cell of proximal tubule | 3.01e-12 | 3 |
kidney cell | 4.36e-12 | 17 |
kidney epithelial cell | 4.36e-12 | 17 |
pneumocyte | 4.99e-12 | 3 |
kidney cortical cell | 2.20e-11 | 12 |
renal cortical epithelial cell | 2.20e-11 | 12 |
mucus secreting cell | 8.17e-10 | 1 |
epithelial cell | 1.27e-08 | 253 |
epithelial cell of lung | 3.92e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.13e-11 | 25 |
carcinoma | 4.47e-11 | 106 |
mucinous adenocarcinoma | 8.17e-10 | 1 |
cystadenocarcinoma | 1.48e-09 | 1 |
mucinous cystadenocarcinoma | 1.48e-09 | 1 |
cell type cancer | 1.26e-07 | 143 |