UBERON:0002110

Name:	gallbladder
Namespace:	FANTOM
Definition:	"a small organ that aids digestion and stores bile produced by the liver[WP]. Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder[FMA]." [FMA:7202, Wikipedia:Gallbladder]
Xrefs:	Expandlinks: AAO:0010114 BTO:0000493 EFO:0000853 EHDAA2:0000699 EHDAA:8062 EMAPA:17202 EV:0100090 FMA:7202 galen:Gallbladder [1] [ 200px-Abdomal_organs.svg.png] MA:0000356 MAT:0000072 MESH:A.03.159.439 MIAA:0000072 ncithesaurus:Gallbladder OpenCyc:Mx4rvVkGr5wpEbGdrcN5Y29ycA SCTID:181269000 TAO:0000208 VHOG:0000221 XAO:0000135 ZFA:0000208
Synonyms:	"gall bladder" EXACT [] "vesica fellea; vesica biliaris" RELATED LATIN [Wikipedia:Gallbladder]
Comments:	Rats do not have a gallbladder, but produce bile. The bile flows directly from the liver through the (hepatic) bile duct into the small intestine (Hebel and Stromberg, 1988)
Alt_id:	UBERON:FMA_7202-MA_0000356-MIAA_0000072-XAO_0000135-ZFA_0000208
Subset:	organ_slim uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0004119(endoderm-derived structure),UBERON:0013765(digestive system element),UBERON:0017672(abdominal viscera)
develops_from:	UBERON:0004912(biliary bud),UBERON:0006242(gall bladder primordium)
part_of:	UBERON:0000916(abdomen),UBERON:0001173(biliary tree)

Children

derives from:	FF:0010198 (human gall bladder - adult sample)
part of:	CL:1000415 (epithelial cell of gall bladder)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10198-103E9 (gall bladder, adult)
• 10415-106C1 (gall bladder carcinoma cell line:TGBC2TKB)
• 10470-106I2 (gall bladder carcinoma cell line:TGBC14TKB)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002110 (gallbladder), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
2.39e-66	FFCP PHASE2:Hg19::chr11:1252161..1252166,+	p@chr11:1252161..1252166, +
2.39e-66	FFCP PHASE1:Hg19::chr20:4100596..4100603,+	p5@BC027448
2.39e-66	FFCP PHASE1:Hg19::chr14:38091563..38091607,+	p@chr14:38091563..38091607, +
2.39e-66	FFCP PHASE2:Hg19::chr10:103952998..103953003,-	p@chr10:103952998..103953003, -
2.39e-66	FFCP PHASE2:Hg19::chr20:4100562..4100570,+	p4@BC027448
2.39e-66	FFCP PHASE1:Hg19::chr3:145127555..145127558,+	p@chr3:145127555..145127558, +
2.39e-66	FFCP PHASE1:Hg19::chr3:193561605..193561612,-	p3@ENST00000439074
2.39e-66	FFCP PHASE1:Hg19::chr2:42157397..42157411,-	p@chr2:42157397..42157411, -
2.39e-66	FFCP PHASE1:Hg19::chr21:43783664..43783667,+	p@chr21:43783664..43783667, +
2.39e-66	FFCP PHASE2:Hg19::chr18:2351233..2351242,+	p@chr18:2351233..2351242, +
2.39e-66	FFCP PHASE2:Hg19::chr2:42157172..42157179,-	p@chr2:42157172..42157179, -
2.39e-66	FFCP PHASE2:Hg19::chr11:1247434..1247435,+	p@chr11:1247434..1247435, +
2.39e-66	FFCP PHASE2:Hg19::chr20:4100596..4100603,+	p5@BC027448
2.39e-66	FFCP PHASE1:Hg19::chr11:1252161..1252166,+	p@chr11:1252161..1252166, +
2.39e-66	FFCP PHASE2:Hg19::chr9:95737958..95737978,+	p@chr9:95737958..95737978, +
2.39e-66	FFCP PHASE1:Hg19::chr5:25649889..25649911,-	p@chr5:25649889..25649911, -
2.39e-66	FFCP PHASE2:Hg19::chr3:145127555..145127558,+	p@chr3:145127555..145127558, +
2.39e-66	FFCP PHASE2:Hg19::chr3:193561605..193561612,-	p3@ENST00000439074
2.39e-66	FFCP PHASE1:Hg19::chr14:103470614..103470619,-	p17@CDC42BPB
2.39e-66	FFCP PHASE2:Hg19::chr2:42157397..42157411,-	p@chr2:42157397..42157411, -
2.39e-66	FFCP PHASE1:Hg19::chr4:117626532..117626537,+	p@chr4:117626532..117626537, +
2.39e-66	FFCP PHASE2:Hg19::chr14:38091563..38091607,+	p@chr14:38091563..38091607, +
2.39e-66	FFCP PHASE1:Hg19::chr4:26491064..26491072,-	p@chr4:26491064..26491072, -
2.39e-66	FFCP PHASE1:Hg19::chr10:103952998..103953003,-	p@chr10:103952998..103953003, -
2.39e-66	FFCP PHASE1:Hg19::chr11:1247434..1247435,+	p@chr11:1247434..1247435, +
2.39e-66	FFCP PHASE2:Hg19::chr21:43783664..43783667,+	p@chr21:43783664..43783667, +
2.39e-66	FFCP PHASE1:Hg19::chr4:189258158..189258183,-	p@chr4:189258158..189258183, -
2.39e-66	FFCP PHASE2:Hg19::chr5:25649889..25649911,-	p@chr5:25649889..25649911, -
2.39e-66	FFCP PHASE1:Hg19::chr20:4100562..4100570,+	p4@BC027448
2.39e-66	FFCP PHASE2:Hg19::chr4:26491064..26491072,-	p@chr4:26491064..26491072, -
2.39e-66	FFCP PHASE1:Hg19::chr18:2351233..2351242,+	p@chr18:2351233..2351242, +
2.39e-66	FFCP PHASE1:Hg19::chr9:95737958..95737978,+	p@chr9:95737958..95737978, +
2.39e-66	FFCP PHASE2:Hg19::chr4:189258158..189258183,-	p@chr4:189258158..189258183, -
2.39e-66	FFCP PHASE1:Hg19::chr2:42157172..42157179,-	p@chr2:42157172..42157179, -
2.39e-66	FFCP PHASE2:Hg19::chr14:103470614..103470619,-	p17@CDC42BPB
2.39e-66	FFCP PHASE2:Hg19::chr4:117626532..117626537,+	p@chr4:117626532..117626537, +
2.4e-66	FFCP PHASE1:Hg19::chr17:79429043..79429051,-	p@chr17:79429043..79429051, -
2.4e-66	FFCP PHASE2:Hg19::chr17:79429043..79429051,-	p@chr17:79429043..79429051, -
4.89e-53	FFCP PHASE2:Hg19::chr11:111154964..111154975,+	p4@C11orf53
4.89e-53	FFCP PHASE1:Hg19::chr11:111154964..111154975,+	p4@C11orf53
4.27e-34	FFCP PHASE1:Hg19::chr5:147644551..147644576,+	p@chr5:147644551..147644576, +
4.27e-34	FFCP PHASE1:Hg19::chr4:190861941..190861951,+	p3@FRG1
4.27e-34	FFCP PHASE1:Hg19::chr21:43770332..43770340,-	p@chr21:43770332..43770340, -
4.27e-34	FFCP PHASE2:Hg19::chr7:114026271..114026287,-	p@chr7:114026271..114026287, -
4.27e-34	FFCP PHASE1:Hg19::chr5:111570472..111570478,-	p@chr5:111570472..111570478, -
4.27e-34	FFCP PHASE2:Hg19::chr1:187929602..187929615,+	p@chr1:187929602..187929615, +
4.27e-34	FFCP PHASE2:Hg19::chr11:86501763..86501768,+	p33@PRSS23
4.27e-34	FFCP PHASE2:Hg19::chr9:95737369..95737393,+	p18@FGD3
4.27e-34	FFCP PHASE2:Hg19::chr11:1263382..1263385,+	p@chr11:1263382..1263385, +
4.27e-34	FFCP PHASE1:Hg19::chr11:1262749..1262754,+	p@chr11:1262749..1262754, +
4.27e-34	FFCP PHASE2:Hg19::chr11:1260725..1260734,+	p@chr11:1260725..1260734, +
4.27e-34	FFCP PHASE1:Hg19::chr5:147645292..147645302,+	p@chr5:147645292..147645302, +
4.27e-34	FFCP PHASE1:Hg19::chr12:113448406..113448411,+	p14@OAS2
4.27e-34	FFCP PHASE1:Hg19::chr21:28226981..28227000,+	p@chr21:28226981..28227000, +
4.27e-34	FFCP PHASE2:Hg19::chr5:147644551..147644576,+	p@chr5:147644551..147644576, +
4.27e-34	FFCP PHASE1:Hg19::chrX:29431271..29431280,+	p@chrX:29431271..29431280, +
4.27e-34	FFCP PHASE2:Hg19::chr4:190861941..190861951,+	p3@FRG1
4.27e-34	FFCP PHASE2:Hg19::chr21:43770332..43770340,-	p@chr21:43770332..43770340, -
4.27e-34	FFCP PHASE2:Hg19::chr5:111570472..111570478,-	p@chr5:111570472..111570478, -
4.27e-34	FFCP PHASE1:Hg19::chr17:67559529..67559532,+	p@chr17:67559529..67559532, +
4.27e-34	FFCP PHASE1:Hg19::chr10:124050589..124050596,+	p15@BTBD16
4.27e-34	FFCP PHASE2:Hg19::chr11:1247439..1247442,+	p@chr11:1247439..1247442, +
4.27e-34	FFCP PHASE1:Hg19::chr18:35871337..35871346,+	p@chr18:35871337..35871346, +
4.27e-34	FFCP PHASE1:Hg19::chr6:13191432..13191436,-	p@chr6:13191432..13191436, -
4.27e-34	FFCP PHASE1:Hg19::chr19:28401158..28401162,-	p@chr19:28401158..28401162, -
4.27e-34	FFCP PHASE1:Hg19::chr11:1260725..1260734,+	p@chr11:1260725..1260734, +
4.27e-34	FFCP PHASE2:Hg19::chr5:147645292..147645302,+	p@chr5:147645292..147645302, +
4.27e-34	FFCP PHASE1:Hg19::chr11:86501763..86501768,+	p33@PRSS23
4.27e-34	FFCP PHASE2:Hg19::chrX:29431271..29431280,+	p@chrX:29431271..29431280, +
4.27e-34	FFCP PHASE2:Hg19::chr21:28226981..28227000,+	p@chr21:28226981..28227000, +
4.27e-34	FFCP PHASE1:Hg19::chr18:2351165..2351175,+	p@chr18:2351165..2351175, +
4.27e-34	FFCP PHASE1:Hg19::chr11:1263382..1263385,+	p@chr11:1263382..1263385, +
4.27e-34	FFCP PHASE1:Hg19::chr9:95737369..95737393,+	p18@FGD3
4.27e-34	FFCP PHASE2:Hg19::chr17:67559529..67559532,+	p@chr17:67559529..67559532, +
4.27e-34	FFCP PHASE1:Hg19::chr7:114026271..114026287,-	p@chr7:114026271..114026287, -
4.27e-34	FFCP PHASE2:Hg19::chr12:113448406..113448411,+	p14@OAS2
4.27e-34	FFCP PHASE1:Hg19::chr1:187929602..187929615,+	p@chr1:187929602..187929615, +
4.27e-34	FFCP PHASE1:Hg19::chr11:1247439..1247442,+	p@chr11:1247439..1247442, +
4.27e-34	FFCP PHASE2:Hg19::chr18:35871337..35871346,+	p@chr18:35871337..35871346, +
4.27e-34	FFCP PHASE2:Hg19::chr11:1262749..1262754,+	p@chr11:1262749..1262754, +
4.27e-34	FFCP PHASE2:Hg19::chr10:124050589..124050596,+	p15@BTBD16
4.27e-34	FFCP PHASE2:Hg19::chr18:2351165..2351175,+	p@chr18:2351165..2351175, +
4.27e-34	FFCP PHASE2:Hg19::chr6:13191432..13191436,-	p@chr6:13191432..13191436, -
4.27e-34	FFCP PHASE2:Hg19::chr19:28401158..28401162,-	p@chr19:28401158..28401162, -
5.96e-34	FFCP PHASE1:Hg19::chr1:187929716..187929735,+	p@chr1:187929716..187929735, +
5.96e-34	FFCP PHASE2:Hg19::chr4:59982412..59982425,+	p@chr4:59982412..59982425, +
5.96e-34	FFCP PHASE1:Hg19::chr4:175184051..175184061,-	p18@FBXO8
5.96e-34	FFCP PHASE1:Hg19::chr18:55095246..55095262,+	p@chr18:55095246..55095262, +
5.96e-34	FFCP PHASE2:Hg19::chr19:36757642..36757645,+	p@chr19:36757642..36757645, +
5.96e-34	FFCP PHASE1:Hg19::chr5:498417..498421,-	p@chr5:498417..498421, -
5.96e-34	FFCP PHASE2:Hg19::chr22:50723475..50723477,-	p@chr22:50723475..50723477, -
5.96e-34	FFCP PHASE1:Hg19::chr16:34378161..34378168,+	p@chr16:34378161..34378168, +
5.96e-34	FFCP PHASE2:Hg19::chr10:66386701..66386711,-	p@chr10:66386701..66386711, -
5.96e-34	FFCP PHASE2:Hg19::chr12:127102703..127102711,-	p@chr12:127102703..127102711, -
5.96e-34	FFCP PHASE2:Hg19::chr5:37852067..37852074,-	p@chr5:37852067..37852074, -
5.96e-34	FFCP PHASE2:Hg19::chrX:132849095..132849103,+	p@chrX:132849095..132849103, +
5.96e-34	FFCP PHASE1:Hg19::chr1:228131903..228131923,-	p@chr1:228131903..228131923, -
5.96e-34	FFCP PHASE1:Hg19::chr7:117355942..117355945,-	p@chr7:117355942..117355945, -
5.96e-34	FFCP PHASE2:Hg19::chr4:175184051..175184061,-	p18@FBXO8
5.96e-34	FFCP PHASE2:Hg19::chr1:187929716..187929735,+	p@chr1:187929716..187929735, +

Showing 1 to 100 of 100 entries

Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ attached to the liver which stores bile and empties into the duodenum via the bile duct as needed for digestion.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship type change: differentiates_from endoderm (AAO:0000139) CHANGED TO: develops_from endoderm (UBERON:0000925)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.