FFCP PHASE1:Hg19::chr18:3456189..3456200,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:3456189..3456200,+ to FFCP PHASE1:Hg19::chr18:3456189..3456200,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr18:3456189..3456200,+ | |||
|coexpression_cluster_id=C2401 | |||
|description=CAGE_peak_at_chr18:3456189..3456200,+ | |||
|id=chr18:3456189..3456200,+ | |||
|ontology_enrichment_celltype=CL:1000497!3.61e-25!18;CL:0002518!3.61e-25!18;CL:1000449!5.52e-21!16;CL:1000507!3.08e-20!12;CL:1000494!3.08e-20!12;CL:0000066!2.31e-15!254;CL:0002681!1.47e-14!13;CL:0002584!1.47e-14!13;CL:0000239!1.34e-08!3;CL:1000615!1.34e-08!3;CL:0002306!1.34e-08!3;CL:0002149!9.88e-07!6;CL:0002255!9.88e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.55e-75;10!CL:1000494;2.55e-75;10!CL:1000497;4.02e-63;17!CL:0002518;4.02e-63;17!CL:1000449;4.90e-60;15!CL:0002681;1.46e-39;12!CL:0002584;1.46e-39;12!CL:0000239;6.01e-24;3!CL:1000615;6.01e-24;3!CL:0002306;6.01e-24;3!CL:0000650;2.37e-16;2!CL:1000500;2.37e-16;2!CL:1000618;2.37e-16;2!CL:1001318;2.37e-16;2!CL:0002173;2.37e-16;2!CL:1000746;2.22e-10;7!CL:1000612;2.22e-10;7!CL:0000313;1.96e-09;1!CL:0000669;1.25e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.88e-75,10;CL:1000494,2.88e-75,10;CL:1000497,4.89e-63,17;CL:0002518,4.89e-63,17;CL:1000449,5.84e-60,15;CL:0002681,1.79e-39,12;CL:0002584,1.79e-39,12;CL:0000239,9.99e-24,3;CL:1000615,9.99e-24,3;CL:0002306,9.99e-24,3;CL:0000650,2.99e-16,2;CL:1000500,2.99e-16,2;CL:1000618,2.99e-16,2;CL:1001318,2.99e-16,2;CL:0002173,2.99e-16,2;CL:0000066,5.60e-11,253;CL:1000746,2.57e-10,7;CL:1000612,2.57e-10,7;CL:0000313,1.89e-09,1;CL:0000669,1.40e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.42e-07;10!UBERON:0007687;1.42e-07;10 | |||
|ontology_enrichment_disease=DOID:299!8.01e-18!25;DOID:305!1.09e-13!106;DOID:0050687!1.84e-10!143;DOID:3001!9.88e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:4468;5.53e-17;2!DOID:299;6.79e-11;25!DOID:2152;1.96e-09;1!DOID:120;3.75e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,5.76e-17,2;DOID:299,6.05e-11,25;DOID:2152,1.89e-09,1;DOID:120,3.51e-07,27 | |||
|ontology_enrichment_uberon=UBERON:0005172!1.67e-23!55;UBERON:0005173!1.67e-23!55;UBERON:0002113!2.74e-23!27;UBERON:0003918!2.74e-23!27;UBERON:0005095!2.74e-23!27;UBERON:0007687!2.74e-23!27;UBERON:0002417!3.48e-22!61;UBERON:0000916!3.48e-22!61;UBERON:0004211!5.52e-21!16;UBERON:0001285!5.52e-21!16;UBERON:0007684!5.52e-21!16;UBERON:0003220!5.52e-21!16;UBERON:0004208!5.52e-21!16;UBERON:0009773!3.08e-20!12;UBERON:0001231!3.08e-20!12;UBERON:0004810!3.08e-20!12;UBERON:0006555!1.48e-19!17;UBERON:0005103!1.48e-19!17;UBERON:0000083!1.48e-19!17;UBERON:0009201!1.48e-19!17;UBERON:0004819!1.48e-19!17;UBERON:0006553!1.48e-19!17;UBERON:0003074!1.48e-19!17;UBERON:0003060!1.48e-19!17;UBERON:0000489!7.26e-19!32;UBERON:0000080!2.74e-18!18;UBERON:0002120!2.74e-18!18;UBERON:0004875!2.74e-18!18;UBERON:0005721!2.74e-18!18;UBERON:0005754!2.74e-18!18;UBERON:0007297!2.74e-18!18;UBERON:0006554!1.57e-17!44;UBERON:0001008!5.17e-17!45;UBERON:0004876!3.90e-16!20;UBERON:0000058!6.27e-16!26;UBERON:0003887!3.25e-15!21;UBERON:0001225!1.47e-14!13;UBERON:0008987!1.47e-14!13;UBERON:0001851!6.72e-14!16;UBERON:0005177!2.65e-13!107;UBERON:0009569!3.67e-12!113;UBERON:0003064!1.61e-11!37;UBERON:0000353!1.19e-10!17;UBERON:0003886!3.36e-10!63;UBERON:0000466!6.89e-10!126;UBERON:0003103!5.07e-09!69;UBERON:0003104!7.44e-09!238;UBERON:0009142!7.44e-09!238;UBERON:0002553!1.14e-08!70;UBERON:0006853!1.34e-08!3;UBERON:0007685!1.34e-08!3;UBERON:0004134!1.34e-08!3;UBERON:0002100!1.42e-07!216;UBERON:0009497!1.61e-07!25;UBERON:0000015!1.61e-07!25;UBERON:0002423!1.61e-07!25;UBERON:0006235!1.61e-07!25;UBERON:0004161!1.61e-07!25;UBERON:0003914!5.61e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.55e-75;10!UBERON:0009773;2.55e-75;10!UBERON:0001231;2.55e-75;10!UBERON:0004810;2.55e-75;10!UBERON:0002113;2.94e-60;24!UBERON:0011143;2.94e-60;24!UBERON:0006555;4.90e-60;15!UBERON:0004819;4.90e-60;15!UBERON:0001285;4.90e-60;15!UBERON:0007684;4.90e-60;15!UBERON:0000489;1.88e-49;29!UBERON:0006554;1.01e-47;30!UBERON:0001008;1.01e-47;30!UBERON:0001225;1.46e-39;12!UBERON:0008987;1.46e-39;12!UBERON:0001851;1.84e-31;15!UBERON:0000353;1.84e-31;15!UBERON:0005172;9.71e-25;52!UBERON:0005173;9.71e-25;52!UBERON:0006853;6.01e-24;3!UBERON:0007685;6.01e-24;3!UBERON:0004134;6.01e-24;3!UBERON:0003567;2.37e-16;2!UBERON:0003838;2.37e-16;2!UBERON:0003586;2.37e-16;2!UBERON:0005169;2.37e-16;2!UBERON:0002321;2.37e-16;2!UBERON:0005215;2.37e-16;2!UBERON:0002303;2.37e-16;2!UBERON:0002319;2.37e-16;2!UBERON:0002417;1.66e-14;58!UBERON:0000916;1.66e-14;58!UBERON:0003103;4.15e-11;61!UBERON:0000074;2.22e-10;7!UBERON:0001229;2.22e-10;7!UBERON:0004911;1.96e-09;1!UBERON:0003891;1.25e-08;4!UBERON:0005177;5.23e-08;99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.88e-75,10;UBERON:0004211,5.84e-60,15;UBERON:0009773,5.84e-60,15;UBERON:0001231,5.84e-60,15;UBERON:0001285,5.84e-60,15;UBERON:0007684,5.84e-60,15;UBERON:0004208,5.84e-60,15;UBERON:0006555,4.17e-56,16;UBERON:0004819,4.17e-56,16;UBERON:0002113,1.76e-55,26;UBERON:0003918,1.76e-55,26;UBERON:0011143,1.76e-55,26;UBERON:0005095,1.76e-55,26;UBERON:0007687,1.76e-55,26;UBERON:0000489,3.84e-46,31;UBERON:0001225,1.79e-39,12;UBERON:0008987,1.79e-39,12;UBERON:0005172,1.77e-33,54;UBERON:0005173,1.77e-33,54;UBERON:0001851,2.16e-31,15;UBERON:0000353,2.16e-31,15;UBERON:0002417,7.65e-30,60;UBERON:0000916,7.65e-30,60;UBERON:0006554,1.36e-29,47;UBERON:0001008,6.36e-29,48;UBERON:0006853,9.99e-24,3;UBERON:0007685,9.99e-24,3;UBERON:0004134,9.99e-24,3;UBERON:0003103,1.13e-19,68;UBERON:0005177,1.53e-16,101;UBERON:0003567,2.99e-16,2;UBERON:0003838,2.99e-16,2;UBERON:0003586,2.99e-16,2;UBERON:0005169,2.99e-16,2;UBERON:0002321,2.99e-16,2;UBERON:0005215,2.99e-16,2;UBERON:0002303,2.99e-16,2;UBERON:0002319,2.99e-16,2;UBERON:0009569,1.26e-14,112;UBERON:0003104,9.91e-11,160;UBERON:0009142,9.91e-11,160;UBERON:0010532,2.57e-10,7;UBERON:0000074,2.57e-10,7;UBERON:0001229,2.57e-10,7;UBERON:0001230,2.57e-10,7;UBERON:0003220,2.57e-10,7;UBERON:0005749,2.57e-10,7;UBERON:0004199,2.57e-10,7;UBERON:0004209,2.57e-10,7;UBERON:0004198,2.57e-10,7;UBERON:0003914,3.03e-10,117;UBERON:0004911,1.89e-09,1;UBERON:0005103,4.33e-09,8;UBERON:0000083,4.33e-09,8;UBERON:0009201,4.33e-09,8;UBERON:0006553,4.33e-09,8;UBERON:0003074,4.33e-09,8;UBERON:0003060,4.33e-09,8;UBERON:0003891,1.40e-08,4;UBERON:0000080,3.92e-08,9;UBERON:0002120,3.92e-08,9;UBERON:0004875,3.92e-08,9;UBERON:0005721,3.92e-08,9;UBERON:0005754,3.92e-08,9;UBERON:0007297,3.92e-08,9;UBERON:0002100,5.19e-08,199;UBERON:0004876,9.76e-07,11 | |||
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| ||
|short_description=p@chr18:3456189..3456200,+ | |||
}} | }} |
Latest revision as of 00:43, 26 July 2015
Short description: | p@chr18:3456189..3456200, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:3456189..3456200, + |
Coexpression cluster: | C2401_serous_Renal_renal_signet_mesothelioma_kidney_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.88e-75 | 10 |
nephron tubule epithelial cell | 2.88e-75 | 10 |
kidney cell | 4.89e-63 | 17 |
kidney epithelial cell | 4.89e-63 | 17 |
epithelial cell of nephron | 5.84e-60 | 15 |
kidney cortical cell | 1.79e-39 | 12 |
renal cortical epithelial cell | 1.79e-39 | 12 |
brush border epithelial cell | 9.99e-24 | 3 |
kidney cortex tubule cell | 9.99e-24 | 3 |
epithelial cell of proximal tubule | 9.99e-24 | 3 |
mesangial cell | 2.99e-16 | 2 |
kidney interstitial cell | 2.99e-16 | 2 |
juxtaglomerular complex cell | 2.99e-16 | 2 |
renal interstitial pericyte | 2.99e-16 | 2 |
extraglomerular mesangial cell | 2.99e-16 | 2 |
epithelial cell | 5.60e-11 | 253 |
glomerular cell | 2.57e-10 | 7 |
kidney corpuscule cell | 2.57e-10 | 7 |
serous secreting cell | 1.89e-09 | 1 |
pericyte cell | 1.40e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 5.76e-17 | 2 |
adenocarcinoma | 6.05e-11 | 25 |
ovary epithelial cancer | 1.89e-09 | 1 |
female reproductive organ cancer | 3.51e-07 | 27 |