FFCP PHASE1:Hg19::chr18:3456189..3456200,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C2401|description=CAGE_peak_at_chr18:3456189..3456200,+|id=chr18:3456189..3456200,+|ontology_enrichment_celltype=CL:1000497!3.61e-25!18;CL:0002518!3.61e-25!18;CL:1000449!5.52e-21!16;CL:1000507!3.08e-20!12;CL:1000494!3.08e-20!12;CL:0000066!2.31e-15!254;CL:0002681!1.47e-14!13;CL:0002584!1.47e-14!13;CL:0000239!1.34e-08!3;CL:1000615!1.34e-08!3;CL:0002306!1.34e-08!3;CL:0002149!9.88e-07!6;CL:0002255!9.88e-07!6|ontology_enrichment_celltype_v019=CL:1000507;2.55e-75;10!CL:1000494;2.55e-75;10!CL:1000497;4.02e-63;17!CL:0002518;4.02e-63;17!CL:1000449;4.90e-60;15!CL:0002681;1.46e-39;12!CL:0002584;1.46e-39;12!CL:0000239;6.01e-24;3!CL:1000615;6.01e-24;3!CL:0002306;6.01e-24;3!CL:0000650;2.37e-16;2!CL:1000500;2.37e-16;2!CL:1000618;2.37e-16;2!CL:1001318;2.37e-16;2!CL:0002173;2.37e-16;2!CL:1000746;2.22e-10;7!CL:1000612;2.22e-10;7!CL:0000313;1.96e-09;1!CL:0000669;1.25e-08;4|ontology_enrichment_celltype_v019_2=CL:1000507,2.88e-75,10;CL:1000494,2.88e-75,10;CL:1000497,4.89e-63,17;CL:0002518,4.89e-63,17;CL:1000449,5.84e-60,15;CL:0002681,1.79e-39,12;CL:0002584,1.79e-39,12;CL:0000239,9.99e-24,3;CL:1000615,9.99e-24,3;CL:0002306,9.99e-24,3;CL:0000650,2.99e-16,2;CL:1000500,2.99e-16,2;CL:1000618,2.99e-16,2;CL:1001318,2.99e-16,2;CL:0002173,2.99e-16,2;CL:0000066,5.60e-11,253;CL:1000746,2.57e-10,7;CL:1000612,2.57e-10,7;CL:0000313,1.89e-09,1;CL:0000669,1.40e-08,4|ontology_enrichment_development_v019=UBERON:0003918;1.42e-07;10!UBERON:0007687;1.42e-07;10|ontology_enrichment_disease=DOID:299!8.01e-18!25;DOID:305!1.09e-13!106;DOID:0050687!1.84e-10!143;DOID:3001!9.88e-07!6|ontology_enrichment_disease_v019=DOID:4468;5.53e-17;2!DOID:299;6.79e-11;25!DOID:2152;1.96e-09;1!DOID:120;3.75e-07;27|ontology_enrichment_disease_v019_2=DOID:4468,5.76e-17,2;DOID:299,6.05e-11,25;DOID:2152,1.89e-09,1;DOID:120,3.51e-07,27|ontology_enrichment_uberon=UBERON:0005172!1.67e-23!55;UBERON:0005173!1.67e-23!55;UBERON:0002113!2.74e-23!27;UBERON:0003918!2.74e-23!27;UBERON:0005095!2.74e-23!27;UBERON:0007687!2.74e-23!27;UBERON:0002417!3.48e-22!61;UBERON:0000916!3.48e-22!61;UBERON:0004211!5.52e-21!16;UBERON:0001285!5.52e-21!16;UBERON:0007684!5.52e-21!16;UBERON:0003220!5.52e-21!16;UBERON:0004208!5.52e-21!16;UBERON:0009773!3.08e-20!12;UBERON:0001231!3.08e-20!12;UBERON:0004810!3.08e-20!12;UBERON:0006555!1.48e-19!17;UBERON:0005103!1.48e-19!17;UBERON:0000083!1.48e-19!17;UBERON:0009201!1.48e-19!17;UBERON:0004819!1.48e-19!17;UBERON:0006553!1.48e-19!17;UBERON:0003074!1.48e-19!17;UBERON:0003060!1.48e-19!17;UBERON:0000489!7.26e-19!32;UBERON:0000080!2.74e-18!18;UBERON:0002120!2.74e-18!18;UBERON:0004875!2.74e-18!18;UBERON:0005721!2.74e-18!18;UBERON:0005754!2.74e-18!18;UBERON:0007297!2.74e-18!18;UBERON:0006554!1.57e-17!44;UBERON:0001008!5.17e-17!45;UBERON:0004876!3.90e-16!20;UBERON:0000058!6.27e-16!26;UBERON:0003887!3.25e-15!21;UBERON:0001225!1.47e-14!13;UBERON:0008987!1.47e-14!13;UBERON:0001851!6.72e-14!16;UBERON:0005177!2.65e-13!107;UBERON:0009569!3.67e-12!113;UBERON:0003064!1.61e-11!37;UBERON:0000353!1.19e-10!17;UBERON:0003886!3.36e-10!63;UBERON:0000466!6.89e-10!126;UBERON:0003103!5.07e-09!69;UBERON:0003104!7.44e-09!238;UBERON:0009142!7.44e-09!238;UBERON:0002553!1.14e-08!70;UBERON:0006853!1.34e-08!3;UBERON:0007685!1.34e-08!3;UBERON:0004134!1.34e-08!3;UBERON:0002100!1.42e-07!216;UBERON:0009497!1.61e-07!25;UBERON:0000015!1.61e-07!25;UBERON:0002423!1.61e-07!25;UBERON:0006235!1.61e-07!25;UBERON:0004161!1.61e-07!25;UBERON:0003914!5.61e-07!118|ontology_enrichment_uberon_v019=UBERON:0004211;2.55e-75;10!UBERON:0009773;2.55e-75;10!UBERON:0001231;2.55e-75;10!UBERON:0004810;2.55e-75;10!UBERON:0002113;2.94e-60;24!UBERON:0011143;2.94e-60;24!UBERON:0006555;4.90e-60;15!UBERON:0004819;4.90e-60;15!UBERON:0001285;4.90e-60;15!UBERON:0007684;4.90e-60;15!UBERON:0000489;1.88e-49;29!UBERON:0006554;1.01e-47;30!UBERON:0001008;1.01e-47;30!UBERON:0001225;1.46e-39;12!UBERON:0008987;1.46e-39;12!UBERON:0001851;1.84e-31;15!UBERON:0000353;1.84e-31;15!UBERON:0005172;9.71e-25;52!UBERON:0005173;9.71e-25;52!UBERON:0006853;6.01e-24;3!UBERON:0007685;6.01e-24;3!UBERON:0004134;6.01e-24;3!UBERON:0003567;2.37e-16;2!UBERON:0003838;2.37e-16;2!UBERON:0003586;2.37e-16;2!UBERON:0005169;2.37e-16;2!UBERON:0002321;2.37e-16;2!UBERON:0005215;2.37e-16;2!UBERON:0002303;2.37e-16;2!UBERON:0002319;2.37e-16;2!UBERON:0002417;1.66e-14;58!UBERON:0000916;1.66e-14;58!UBERON:0003103;4.15e-11;61!UBERON:0000074;2.22e-10;7!UBERON:0001229;2.22e-10;7!UBERON:0004911;1.96e-09;1!UBERON:0003891;1.25e-08;4!UBERON:0005177;5.23e-08;99|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.88e-75,10;UBERON:0004211,5.84e-60,15;UBERON:0009773,5.84e-60,15;UBERON:0001231,5.84e-60,15;UBERON:0001285,5.84e-60,15;UBERON:0007684,5.84e-60,15;UBERON:0004208,5.84e-60,15;UBERON:0006555,4.17e-56,16;UBERON:0004819,4.17e-56,16;UBERON:0002113,1.76e-55,26;UBERON:0003918,1.76e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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C2401 | |||
|description=CAGE_peak_at_chr18:3456189..3456200,+ | |||
|id=chr18:3456189..3456200,+ | |||
|ontology_enrichment_celltype=CL:1000497!3.61e-25!18;CL:0002518!3.61e-25!18;CL:1000449!5.52e-21!16;CL:1000507!3.08e-20!12;CL:1000494!3.08e-20!12;CL:0000066!2.31e-15!254;CL:0002681!1.47e-14!13;CL:0002584!1.47e-14!13;CL:0000239!1.34e-08!3;CL:1000615!1.34e-08!3;CL:0002306!1.34e-08!3;CL:0002149!9.88e-07!6;CL:0002255!9.88e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.55e-75;10!CL:1000494;2.55e-75;10!CL:1000497;4.02e-63;17!CL:0002518;4.02e-63;17!CL:1000449;4.90e-60;15!CL:0002681;1.46e-39;12!CL:0002584;1.46e-39;12!CL:0000239;6.01e-24;3!CL:1000615;6.01e-24;3!CL:0002306;6.01e-24;3!CL:0000650;2.37e-16;2!CL:1000500;2.37e-16;2!CL:1000618;2.37e-16;2!CL:1001318;2.37e-16;2!CL:0002173;2.37e-16;2!CL:1000746;2.22e-10;7!CL:1000612;2.22e-10;7!CL:0000313;1.96e-09;1!CL:0000669;1.25e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.88e-75,10;CL:1000494,2.88e-75,10;CL:1000497,4.89e-63,17;CL:0002518,4.89e-63,17;CL:1000449,5.84e-60,15;CL:0002681,1.79e-39,12;CL:0002584,1.79e-39,12;CL:0000239,9.99e-24,3;CL:1000615,9.99e-24,3;CL:0002306,9.99e-24,3;CL:0000650,2.99e-16,2;CL:1000500,2.99e-16,2;CL:1000618,2.99e-16,2;CL:1001318,2.99e-16,2;CL:0002173,2.99e-16,2;CL:0000066,5.60e-11,253;CL:1000746,2.57e-10,7;CL:1000612,2.57e-10,7;CL:0000313,1.89e-09,1;CL:0000669,1.40e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.42e-07;10!UBERON:0007687;1.42e-07;10 | |||
|ontology_enrichment_disease=DOID:299!8.01e-18!25;DOID:305!1.09e-13!106;DOID:0050687!1.84e-10!143;DOID:3001!9.88e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:4468;5.53e-17;2!DOID:299;6.79e-11;25!DOID:2152;1.96e-09;1!DOID:120;3.75e-07;27 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,5.76e-17,2;DOID:299,6.05e-11,25;DOID:2152,1.89e-09,1;DOID:120,3.51e-07,27 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.785874452986276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0,0,0.38474715694639,0,0,0,0,0,0.982827216677626,0,0,0.245976877086227,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0,0.177561725313127,0,0,0,0.725156697549733,0,0,0,0,0,1.80479845162965,1.92538342761037,2.35304930753057,7.30696123266303,3.58875538235777,0,0,0.647747748306418,1.54227252690289,1.62567862526312,3.01013864312912,1.27438136522519,3.3243040357149,4.47749509444357,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43216939740487,0,0,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.58696709697646,6.20284671004761,0.989471500037586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83836228250648,0.277349346026277,0,0,0,0,0.859930162358083,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.426905989478705,0,0.288180834308212,1.83258553865465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.787831823072237,0.906574442192831,1.41547442093788,2.16540459332447,0,0,0,0.321506296930038,0.550157746388935,0.415440338029185,0,0,0,0,3.86147965766071,1.88836517285993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0.855434189421647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0.228840068396924,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,1.79369063011563,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0.118193840883968,0,0,0,0,0,5.61411737168416,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,1.91107787795487,5.70462702168741,0.294450700845729,3.77945567445035,0,0,0,0,0,0.198950775161368,0.713520544665411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0.0898252021065869,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr18:3456189..3456200,+ | |||
}} |
Revision as of 17:23, 11 September 2013
Short description: | p@chr18:3456189..3456200, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:3456189..3456200, + |
Coexpression cluster: | C2401_serous_Renal_renal_signet_mesothelioma_kidney_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.88e-75 | 10 |
nephron tubule epithelial cell | 2.88e-75 | 10 |
kidney cell | 4.89e-63 | 17 |
kidney epithelial cell | 4.89e-63 | 17 |
epithelial cell of nephron | 5.84e-60 | 15 |
kidney cortical cell | 1.79e-39 | 12 |
renal cortical epithelial cell | 1.79e-39 | 12 |
brush border epithelial cell | 9.99e-24 | 3 |
kidney cortex tubule cell | 9.99e-24 | 3 |
epithelial cell of proximal tubule | 9.99e-24 | 3 |
mesangial cell | 2.99e-16 | 2 |
kidney interstitial cell | 2.99e-16 | 2 |
juxtaglomerular complex cell | 2.99e-16 | 2 |
renal interstitial pericyte | 2.99e-16 | 2 |
extraglomerular mesangial cell | 2.99e-16 | 2 |
epithelial cell | 5.60e-11 | 253 |
glomerular cell | 2.57e-10 | 7 |
kidney corpuscule cell | 2.57e-10 | 7 |
serous secreting cell | 1.89e-09 | 1 |
pericyte cell | 1.40e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 5.76e-17 | 2 |
adenocarcinoma | 6.05e-11 | 25 |
ovary epithelial cancer | 1.89e-09 | 1 |
female reproductive organ cancer | 3.51e-07 | 27 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.