FFCP PHASE1:Hg19::chr17:46692457..46692484,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3218|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5119|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000468443_5end|coexpression_cluster_id=C1783|description=CAGE_peak_2_at_HOXB8_5end|id=chr17:46692457..46692484,-|ontology_enrichment_celltype=CL:1000449!6.47e-15!16;CL:1000497!1.09e-14!18;CL:0002518!1.09e-14!18;CL:1000507!2.14e-13!12;CL:1000494!2.14e-13!12;CL:0002681!2.41e-11!13;CL:0002584!2.41e-11!13;CL:0002334!9.08e-07!12|ontology_enrichment_celltype_v019=CL:1000449;2.56e-26;15!CL:1000507;2.40e-24;10!CL:1000494;2.40e-24;10!CL:1000497;7.96e-23;17!CL:0002518;7.96e-23;17!CL:0002681;1.52e-19;12!CL:0002584;1.52e-19;12!CL:1000746;7.97e-09;7!CL:1000612;7.97e-09;7!CL:0000239;9.80e-09;3!CL:1000615;9.80e-09;3!CL:0002306;9.80e-09;3!CL:0002615;1.33e-07;3!CL:0002579;1.66e-07;3|ontology_enrichment_celltype_v019_2=CL:1000449,2.99e-26,15;CL:1000507,2.38e-24,10;CL:1000494,2.38e-24,10;CL:1000497,9.11e-23,17;CL:0002518,9.11e-23,17;CL:0002681,1.73e-19,12;CL:0002584,1.73e-19,12;CL:1000746,9.79e-09,7;CL:1000612,9.79e-09,7;CL:0000239,9.81e-09,3;CL:1000615,9.81e-09,3;CL:0002306,9.81e-09,3;CL:0002615,1.16e-07,3;CL:0002579,2.01e-07,3|ontology_enrichment_development_v019=UBERON:0006241;2.65e-09;3!UBERON:0003057;2.65e-09;3!UBERON:0007297;6.62e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!5.77e-22!32;UBERON:0000080!1.38e-17!18;UBERON:0002120!1.38e-17!18;UBERON:0004875!1.38e-17!18;UBERON:0005721!1.38e-17!18;UBERON:0005754!1.38e-17!18;UBERON:0007297!1.38e-17!18;UBERON:0003886!1.89e-16!63;UBERON:0002113!2.08e-16!27;UBERON:0003918!2.08e-16!27;UBERON:0005095!2.08e-16!27;UBERON:0007687!2.08e-16!27;UBERON:0006555!3.07e-16!17;UBERON:0005103!3.07e-16!17;UBERON:0000083!3.07e-16!17;UBERON:0009201!3.07e-16!17;UBERON:0004819!3.07e-16!17;UBERON:0006553!3.07e-16!17;UBERON:0003074!3.07e-16!17;UBERON:0003060!3.07e-16!17;UBERON:0003887!8.13e-16!21;UBERON:0004876!2.84e-15!20;UBERON:0004211!6.47e-15!16;UBERON:0001285!6.47e-15!16;UBERON:0007684!6.47e-15!16;UBERON:0003220!6.47e-15!16;UBERON:0004208!6.47e-15!16;UBERON:0000058!3.68e-14!26;UBERON:0002417!4.32e-14!61;UBERON:0000916!4.32e-14!61;UBERON:0002553!1.10e-13!70;UBERON:0001008!1.40e-13!45;UBERON:0009773!2.14e-13!12;UBERON:0001231!2.14e-13!12;UBERON:0004810!2.14e-13!12;UBERON:0006554!9.19e-13!44;UBERON:0001225!2.41e-11!13;UBERON:0008987!2.41e-11!13;UBERON:0003064!3.61e-11!37;UBERON:0005177!4.33e-11!107;UBERON:0000464!1.61e-10!104;UBERON:0005172!7.85e-10!55;UBERON:0005173!7.85e-10!55;UBERON:0000353!1.96e-09!17;UBERON:0009569!2.74e-09!113;UBERON:0000466!3.66e-09!126;UBERON:0002100!8.52e-09!216;UBERON:0001851!1.28e-08!16;UBERON:0003688!6.86e-08!6;UBERON:0002358!6.86e-08!6;UBERON:0003684!6.86e-08!6;UBERON:0001178!6.86e-08!6;UBERON:0005174!1.11e-07!5;UBERON:0001137!1.11e-07!5;UBERON:0003586!4.01e-07!5|ontology_enrichment_uberon_v019=UBERON:0000489;1.05e-27;29!UBERON:0006555;2.56e-26;15!UBERON:0004819;2.56e-26;15!UBERON:0001285;2.56e-26;15!UBERON:0007684;2.56e-26;15!UBERON:0004211;2.40e-24;10!UBERON:0009773;2.40e-24;10!UBERON:0001231;2.40e-24;10!UBERON:0004810;2.40e-24;10!UBERON:0002113;9.93e-21;24!UBERON:0011143;9.93e-21;24!UBERON:0001225;1.52e-19;12!UBERON:0008987;1.52e-19;12!UBERON:0006554;5.76e-18;30!UBERON:0001008;5.76e-18;30!UBERON:0001851;3.47e-15;15!UBERON:0000353;3.47e-15;15!UBERON:0003688;1.91e-13;6!UBERON:0002358;1.91e-13;6!UBERON:0003684;1.91e-13;6!UBERON:0001178;1.91e-13;6!UBERON:0004457;1.05e-11;9!UBERON:0000042;1.05e-11;9!UBERON:0006947;1.44e-09;3!UBERON:0004054;1.44e-09;3!UBERON:0002417;2.35e-09;58!UBERON:0000916;2.35e-09;58!UBERON:0002240;2.65e-09;3!UBERON:0005174;2.65e-09;3!UBERON:0001137;2.65e-09;3!UBERON:0000074;7.97e-09;7!UBERON:0001229;7.97e-09;7!UBERON:0006853;9.80e-09;3!UBERON:0007685;9.80e-09;3!UBERON:0004134;9.80e-09;3!UBERON:0005172;1.27e-08;52!UBERON:0005173;1.27e-08;52!UBERON:0004175;1.37e-08;21!UBERON:0005904;3.08e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0000489,3.69e-32,31;UBERON:0006555,9.24e-29,16;UBERON:0004819,9.24e-29,16;UBERON:0004211,2.99e-26,15;UBERON:0009773,2.99e-26,15;UBERON:0001231,2.99e-26,15;UBERON:0001285,2.99e-26,15;UBERON:0007684,2.99e-26,15;UBERON:0004208,2.99e-26,15;UBERON:0002113,5.37e-25,26;UBERON:0003918,5.37e-25,26;UBERON:0011143,5.37e-25,26;UBERON:0005095,5.37e-25,26;UBERON:0007687,5.37e-25,26;UBERON:0004810,2.38e-24,10;UBERON:0002417,1.11e-21,60;UBERON:0000916,1.11e-21,60;UBERON:0001225,1.73e-19,12;UBERON:0008987,1.73e-19,12;UBERON:0001008,3.97e-16,48;UBERON:0001851,3.83e-15,15;UBERON:0000353,3.83e-15,15;UBERON:0006554,7.48e-15,47;UBERON:0005172,3.59e-14,54;UBERON:0005173,3.59e-14,54;UBERON:0003688,2.02e-13,6;UBERON:0002358,2.02e-13,6;UBERON:0003684,2.02e-13,6;UBERON:0001178,2.02e-13,6;UBERON:0000080,2.11e-13,9;UBERON:0002120,2.11e-13,9;UBERON:0004875,2.11e-13,9;UBERON:0005721,2.11e-13,9;UBERON:0005754,2.11e-13,9;UBERON:0007297,2.11e-13,9;UBERON:0009569,1.53e-1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5119 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000468443_5end | |||
|coexpression_cluster_id=C1783 | |||
|description=CAGE_peak_2_at_HOXB8_5end | |||
|id=chr17:46692457..46692484,- | |||
|ontology_enrichment_celltype=CL:1000449!6.47e-15!16;CL:1000497!1.09e-14!18;CL:0002518!1.09e-14!18;CL:1000507!2.14e-13!12;CL:1000494!2.14e-13!12;CL:0002681!2.41e-11!13;CL:0002584!2.41e-11!13;CL:0002334!9.08e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000449;2.56e-26;15!CL:1000507;2.40e-24;10!CL:1000494;2.40e-24;10!CL:1000497;7.96e-23;17!CL:0002518;7.96e-23;17!CL:0002681;1.52e-19;12!CL:0002584;1.52e-19;12!CL:1000746;7.97e-09;7!CL:1000612;7.97e-09;7!CL:0000239;9.80e-09;3!CL:1000615;9.80e-09;3!CL:0002306;9.80e-09;3!CL:0002615;1.33e-07;3!CL:0002579;1.66e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,2.99e-26,15;CL:1000507,2.38e-24,10;CL:1000494,2.38e-24,10;CL:1000497,9.11e-23,17;CL:0002518,9.11e-23,17;CL:0002681,1.73e-19,12;CL:0002584,1.73e-19,12;CL:1000746,9.79e-09,7;CL:1000612,9.79e-09,7;CL:0000239,9.81e-09,3;CL:1000615,9.81e-09,3;CL:0002306,9.81e-09,3;CL:0002615,1.16e-07,3;CL:0002579,2.01e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;2.65e-09;3!UBERON:0003057;2.65e-09;3!UBERON:0007297;6.62e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p2@HOXB8 | |||
}} |
Revision as of 14:16, 11 September 2013
Short description: | p2@HOXB8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_HOXB8_5end |
Coexpression cluster: | C1783_alveolar_nonsmall_ductus_spinal_seminal_epididymis_somatostatinoma |
Association with transcript: | 0bp_to_ENST00000468443_5end |
EntrezGene: | HOXB8 |
HGNC: | 5119 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 2.99e-26 | 15 |
kidney tubule cell | 2.38e-24 | 10 |
nephron tubule epithelial cell | 2.38e-24 | 10 |
kidney cell | 9.11e-23 | 17 |
kidney epithelial cell | 9.11e-23 | 17 |
kidney cortical cell | 1.73e-19 | 12 |
renal cortical epithelial cell | 1.73e-19 | 12 |
glomerular cell | 9.79e-09 | 7 |
kidney corpuscule cell | 9.79e-09 | 7 |
brush border epithelial cell | 9.81e-09 | 3 |
kidney cortex tubule cell | 9.81e-09 | 3 |
epithelial cell of proximal tubule | 9.81e-09 | 3 |
adipocyte of omentum tissue | 1.16e-07 | 3 |
omentum preadipocyte | 2.01e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.