Personal tools

FF:10663-109C6: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|id=FF:10663-109C6
|F5samples=
|name=neuroectodermal tumor cell line:FU-RPNT-2
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001062,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0005423
|sample_id=10663
|rna_tube_id=109C6
|rna_box=109
|rna_position=C6
|sample_cell_lot=
|sample_cell_catalog=RCB2078
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=10
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.14
|rna_od260/280=2.08
|sample_cell_type=unclassifiable
|sample_cell_line=FU-RPNT-2
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=neuroectodermal tumor
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=93.84913
|rna_concentration=1.99679
|sample_note=
|profile_hcage=CNhs11753,LSID820,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001062,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0005423
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:171,DOID:2994,DOID:3095,DOID:4
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:171,DOID:2994,DOID:3095,DOID:4
|sample_description=
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=FF:10663-109C6
|fonse_cell_line=FF:10663-109C6
|fonse_cell_line_closure=FF:10663-109C6
|fonse_cell_line_closure=FF:10663-109C6
Line 66: Line 34:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=TOPORS:4.28708651435;PITX1..3:4.10554169973;FOXP1:3.91252758068;PAX4:3.23293686208;ALX1:3.1595784344;AIRE:2.62620344742;ZBTB16:2.19014776549;CDX1,2,4:2.16851063033;POU1F1:1.94991437435;FOXD3:1.89284913102;POU3F1..4:1.428417362;PRRX1,2:1.42047896505;ARID5B:1.33040395342;STAT5{A,B}:1.31122686624;PBX1:1.25236894232;HOXA9_MEIS1:1.23113285029;POU2F1..3:1.21162951698;GATA4:1.20587732193;LHX3,4:1.20283262918;DBP:1.16755421189;IKZF2:1.16704663582;OCT4_SOX2{dimer}:1.11224612899;E2F1..5:1.0650869204;FOXL1:1.01831699331;POU6F1:1.00962970603;FOXM1:0.971881575305;BREu{core}:0.960543990279;ZNF143:0.955909660247;NRF1:0.946100071114;GTF2A1,2:0.930954265512;YY1:0.904225701666;bHLH_family:0.897914121777;ATF4:0.890923878997;NKX6-1,2:0.890860062408;EGR1..3:0.872868333643;SOX{8,9,10}:0.853675659394;ATF5_CREB3:0.852442499938;T:0.851483528515;POU5F1:0.825488574021;PAX3,7:0.811157796855;PRDM1:0.795247588841;GFI1:0.785442502873;CUX2:0.77357141769;HOX{A5,B5}:0.760659508098;NKX3-1:0.735040933985;FOXQ1:0.717722318239;CRX:0.716776185181;ZIC1..3:0.698685143751;DMAP1_NCOR{1,2}_SMARC:0.693401947675;RFX1:0.670149405162;ZNF384:0.670001672158;HOX{A6,A7,B6,B7}:0.63667189593;NR6A1:0.629760274873;TFDP1:0.623509608485;UFEwm:0.615994744082;NFY{A,B,C}:0.597211138322;ELK1,4_GABP{A,B1}:0.587349329435;FOX{D1,D2}:0.572214406963;REST:0.542239948355;ZNF423:0.500574739434;ATF6:0.493738031145;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.472762251233;RFX2..5_RFXANK_RFXAP:0.429937272715;TEF:0.390683020294;GTF2I:0.357866835346;ZBTB6:0.331585075629;AHR_ARNT_ARNT2:0.312381854086;BPTF:0.301882050731;MZF1:0.290373376251;MTE{core}:0.277854104316;PATZ1:0.273671804639;SOX17:0.270798527285;FOXN1:0.265548819956;SOX5:0.26005895125;STAT1,3:0.246028537711;TLX1..3_NFIC{dimer}:0.240760450747;KLF4:0.221798165056;RORA:0.213068201388;HMGA1,2:0.205016104808;RBPJ:0.196383991467;HOX{A4,D4}:0.180366591597;EVI1:0.165008486029;RXR{A,B,G}:0.153083958166;ONECUT1,2:0.150618907396;MYB:0.106491564503;ZFP161:0.101115851218;FOXP3:0.080929302599;CDC5L:0.0682928076445;PAX1,9:0.0583801119655;PAX8:0.0321502442075;CREB1:0.0149642468047;NHLH1,2:0.0100354468635;PDX1:-0.00413069588585;SREBF1,2:-0.0188535150433;MED-1{core}:-0.023628653039;NFE2L1:-0.0658157046;TBP:-0.0912980753635;NKX2-1,4:-0.107530122676;PAX2:-0.115140036721;ATF2:-0.131572777871;MEF2{A,B,C,D}:-0.143284832999;RREB1:-0.169131804949;PAX5:-0.192809140033;EN1,2:-0.209430633413;GZF1:-0.224965481141;MAZ:-0.225984888685;FOX{I1,J2}:-0.226935990638;ADNP_IRX_SIX_ZHX:-0.233425172143;NKX2-2,8:-0.233911207316;NKX2-3_NKX2-5:-0.23403881967;SP1:-0.253363249001;TFAP2B:-0.280800340622;JUN:-0.284123812175;XBP1:-0.293920412606;NFIX:-0.319269583175;GFI1B:-0.348614215783;SPIB:-0.352536260487;CEBPA,B_DDIT3:-0.360153184307;ALX4:-0.361933693215;XCPE1{core}:-0.380446765549;HNF1A:-0.383787664034;NANOG:-0.385364542078;PAX6:-0.388994760632;GATA6:-0.416749624415;MYFfamily:-0.450917473887;FOXO1,3,4:-0.460556071515;NFIL3:-0.473031795392;NKX3-2:-0.474217119734;NFE2L2:-0.493799066673;RUNX1..3:-0.494301318914;TLX2:-0.500540499191;MTF1:-0.504903551592;NFKB1_REL_RELA:-0.50795941823;TAL1_TCF{3,4,12}:-0.521848785092;FOXA2:-0.534888329017;EBF1:-0.57131422961;TEAD1:-0.574172381404;HIC1:-0.59468816737;IRF1,2:-0.599600122574;HES1:-0.642005863741;ZNF238:-0.642722935946;HNF4A_NR2F1,2:-0.644864579266;SPI1:-0.673847509637;EP300:-0.676519292458;IRF7:-0.676531315097;SRF:-0.696501713941;MAFB:-0.713793839853;TFAP2{A,C}:-0.716136612568;SOX2:-0.717274366863;LMO2:-0.729108902667;NFE2:-0.73143370006;STAT2,4,6:-0.735011912376;TP53:-0.741984286029;AR:-0.75444688592;ELF1,2,4:-0.759466970008;FOS_FOS{B,L1}_JUN{B,D}:-0.766082922391;NANOG{mouse}:-0.773836554888;SNAI1..3:-0.778560796942;HLF:-0.785275154744;ZEB1:-0.81109435967;HBP1_HMGB_SSRP1_UBTF:-0.818093358351;HMX1:-0.85295447092;FOSL2:-0.880942142748;MYOD1:-0.897924152322;SPZ1:-0.902574261879;MYBL2:-0.91407707129;BACH2:-0.927860891287;ETS1,2:-0.931669344735;NR1H4:-0.977957660531;TBX4,5:-0.992779540648;LEF1_TCF7_TCF7L1,2:-1.06206063657;TGIF1:-1.10292293193;HSF1,2:-1.12863038597;GLI1..3:-1.15118102103;ESRRA:-1.19844932787;GCM1,2:-1.20292859407;HIF1A:-1.21133811494;SMAD1..7,9:-1.23029076256;NR3C1:-1.23417167821;HAND1,2:-1.28989515865;PPARG:-1.30946425009;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36292223969;NR5A1,2:-1.39442946492;IKZF1:-1.45382574991;NFATC1..3:-1.48337395688;FOX{F1,F2,J1}:-1.49365836515;VSX1,2:-1.56133730371;RXRA_VDR{dimer}:-1.63774155407;TFAP4:-1.63869669236;ZNF148:-1.9270647122;TFCP2:-1.93321115773;ESR1:-2.07261836761
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:10663-109C6
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346
|name=neuroectodermal tumor cell line:FU-RPNT-2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11753,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=,,,
|rna_box=109
|rna_catalog_number=
|rna_concentration=1.99679
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.14
|rna_od260/280=2.08
|rna_position=C6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=109C6
|rna_weight_ug=93.84913
|sample_age=10
|sample_cell_catalog=RCB2078
|sample_cell_line=FU-RPNT-2
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=neuroectodermal tumor
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_id=10663
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=TOPORS:4.28708651435;PITX1..3:4.10554169973;FOXP1:3.91252758068;PAX4:3.23293686208;ALX1:3.1595784344;AIRE:2.62620344742;ZBTB16:2.19014776549;CDX1,2,4:2.16851063033;POU1F1:1.94991437435;FOXD3:1.89284913102;POU3F1..4:1.428417362;PRRX1,2:1.42047896505;ARID5B:1.33040395342;STAT5{A,B}:1.31122686624;PBX1:1.25236894232;HOXA9_MEIS1:1.23113285029;POU2F1..3:1.21162951698;GATA4:1.20587732193;LHX3,4:1.20283262918;DBP:1.16755421189;IKZF2:1.16704663582;OCT4_SOX2{dimer}:1.11224612899;E2F1..5:1.0650869204;FOXL1:1.01831699331;POU6F1:1.00962970603;FOXM1:0.971881575305;BREu{core}:0.960543990279;ZNF143:0.955909660247;NRF1:0.946100071114;GTF2A1,2:0.930954265512;YY1:0.904225701666;bHLH_family:0.897914121777;ATF4:0.890923878997;NKX6-1,2:0.890860062408;EGR1..3:0.872868333643;SOX{8,9,10}:0.853675659394;ATF5_CREB3:0.852442499938;T:0.851483528515;POU5F1:0.825488574021;PAX3,7:0.811157796855;PRDM1:0.795247588841;GFI1:0.785442502873;CUX2:0.77357141769;HOX{A5,B5}:0.760659508098;NKX3-1:0.735040933985;FOXQ1:0.717722318239;CRX:0.716776185181;ZIC1..3:0.698685143751;DMAP1_NCOR{1,2}_SMARC:0.693401947675;RFX1:0.670149405162;ZNF384:0.670001672158;HOX{A6,A7,B6,B7}:0.63667189593;NR6A1:0.629760274873;TFDP1:0.623509608485;UFEwm:0.615994744082;NFY{A,B,C}:0.597211138322;ELK1,4_GABP{A,B1}:0.587349329435;FOX{D1,D2}:0.572214406963;REST:0.542239948355;ZNF423:0.500574739434;ATF6:0.493738031145;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.472762251233;RFX2..5_RFXANK_RFXAP:0.429937272715;TEF:0.390683020294;GTF2I:0.357866835346;ZBTB6:0.331585075629;AHR_ARNT_ARNT2:0.312381854086;BPTF:0.301882050731;MZF1:0.290373376251;MTE{core}:0.277854104316;PATZ1:0.273671804639;SOX17:0.270798527285;FOXN1:0.265548819956;SOX5:0.26005895125;STAT1,3:0.246028537711;TLX1..3_NFIC{dimer}:0.240760450747;KLF4:0.221798165056;RORA:0.213068201388;HMGA1,2:0.205016104808;RBPJ:0.196383991467;HOX{A4,D4}:0.180366591597;EVI1:0.165008486029;RXR{A,B,G}:0.153083958166;ONECUT1,2:0.150618907396;MYB:0.106491564503;ZFP161:0.101115851218;FOXP3:0.080929302599;CDC5L:0.0682928076445;PAX1,9:0.0583801119655;PAX8:0.0321502442075;CREB1:0.0149642468047;NHLH1,2:0.0100354468635;PDX1:-0.00413069588585;SREBF1,2:-0.0188535150433;MED-1{core}:-0.023628653039;NFE2L1:-0.0658157046;TBP:-0.0912980753635;NKX2-1,4:-0.107530122676;PAX2:-0.115140036721;ATF2:-0.131572777871;MEF2{A,B,C,D}:-0.143284832999;RREB1:-0.169131804949;PAX5:-0.192809140033;EN1,2:-0.209430633413;GZF1:-0.224965481141;MAZ:-0.225984888685;FOX{I1,J2}:-0.226935990638;ADNP_IRX_SIX_ZHX:-0.233425172143;NKX2-2,8:-0.233911207316;NKX2-3_NKX2-5:-0.23403881967;SP1:-0.253363249001;TFAP2B:-0.280800340622;JUN:-0.284123812175;XBP1:-0.293920412606;NFIX:-0.319269583175;GFI1B:-0.348614215783;SPIB:-0.352536260487;CEBPA,B_DDIT3:-0.360153184307;ALX4:-0.361933693215;XCPE1{core}:-0.380446765549;HNF1A:-0.383787664034;NANOG:-0.385364542078;PAX6:-0.388994760632;GATA6:-0.416749624415;MYFfamily:-0.450917473887;FOXO1,3,4:-0.460556071515;NFIL3:-0.473031795392;NKX3-2:-0.474217119734;NFE2L2:-0.493799066673;RUNX1..3:-0.494301318914;TLX2:-0.500540499191;MTF1:-0.504903551592;NFKB1_REL_RELA:-0.50795941823;TAL1_TCF{3,4,12}:-0.521848785092;FOXA2:-0.534888329017;EBF1:-0.57131422961;TEAD1:-0.574172381404;HIC1:-0.59468816737;IRF1,2:-0.599600122574;HES1:-0.642005863741;ZNF238:-0.642722935946;HNF4A_NR2F1,2:-0.644864579266;SPI1:-0.673847509637;EP300:-0.676519292458;IRF7:-0.676531315097;SRF:-0.696501713941;MAFB:-0.713793839853;TFAP2{A,C}:-0.716136612568;SOX2:-0.717274366863;LMO2:-0.729108902667;NFE2:-0.73143370006;STAT2,4,6:-0.735011912376;TP53:-0.741984286029;AR:-0.75444688592;ELF1,2,4:-0.759466970008;FOS_FOS{B,L1}_JUN{B,D}:-0.766082922391;NANOG{mouse}:-0.773836554888;SNAI1..3:-0.778560796942;HLF:-0.785275154744;ZEB1:-0.81109435967;HBP1_HMGB_SSRP1_UBTF:-0.818093358351;HMX1:-0.85295447092;FOSL2:-0.880942142748;MYOD1:-0.897924152322;SPZ1:-0.902574261879;MYBL2:-0.91407707129;BACH2:-0.927860891287;ETS1,2:-0.931669344735;NR1H4:-0.977957660531;TBX4,5:-0.992779540648;LEF1_TCF7_TCF7L1,2:-1.06206063657;TGIF1:-1.10292293193;HSF1,2:-1.12863038597;GLI1..3:-1.15118102103;ESRRA:-1.19844932787;GCM1,2:-1.20292859407;HIF1A:-1.21133811494;SMAD1..7,9:-1.23029076256;NR3C1:-1.23417167821;HAND1,2:-1.28989515865;PPARG:-1.30946425009;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36292223969;NR5A1,2:-1.39442946492;IKZF1:-1.45382574991;NFATC1..3:-1.48337395688;FOX{F1,F2,J1}:-1.49365836515;VSX1,2:-1.56133730371;RXRA_VDR{dimer}:-1.63774155407;TFAP4:-1.63869669236;ZNF148:-1.9270647122;TFCP2:-1.93321115773;ESR1:-2.07261836761
}}
}}

Revision as of 14:12, 21 March 2012


Name:neuroectodermal tumor cell line:FU-RPNT-2
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexmale
age10
cell typeunclassifiable
cell lineFU-RPNT-2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.352
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.348
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0962
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0.0962
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.105
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0.0735
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0347
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0533
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0654
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0507
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0507
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0.0735
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0826
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.299
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.614
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0507
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0507
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.175
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.027
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0507
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.348
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.209
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0427
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0.85
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.0507
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.325
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0.374
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11753

Jaspar motifP-value
MA0002.21.36324e-6
MA0003.10.0372
MA0004.10.373
MA0006.10.159
MA0007.10.227
MA0009.10.939
MA0014.10.773
MA0017.10.00322
MA0018.20.15
MA0019.10.0125
MA0024.10.00162
MA0025.10.272
MA0027.10.3
MA0028.10.29
MA0029.10.498
MA0030.10.311
MA0031.10.259
MA0035.20.0961
MA0038.10.796
MA0039.20.235
MA0040.10.226
MA0041.10.31
MA0042.10.434
MA0043.10.695
MA0046.10.0948
MA0047.20.3
MA0048.10.0673
MA0050.10.0206
MA0051.10.014
MA0052.10.0887
MA0055.10.0936
MA0057.10.178
MA0058.10.372
MA0059.10.547
MA0060.10.171
MA0061.10.0213
MA0062.20.746
MA0065.20.0148
MA0066.10.142
MA0067.10.499
MA0068.16.67307e-5
MA0069.10.803
MA0070.10.879
MA0071.10.615
MA0072.10.696
MA0073.10.0523
MA0074.10.595
MA0076.10.145
MA0077.10.64
MA0078.10.573
MA0079.20.244
MA0080.26.49467e-9
MA0081.10.0407
MA0083.10.261
MA0084.10.074
MA0087.10.262
MA0088.10.117
MA0090.10.222
MA0091.10.362
MA0092.10.398
MA0093.10.411
MA0099.22.03547e-12
MA0100.10.812
MA0101.10.0179
MA0102.20.123
MA0103.10.358
MA0104.20.0704
MA0105.10.522
MA0106.10.748
MA0107.10.00784
MA0108.20.549
MA0111.10.693
MA0112.24.46488e-4
MA0113.10.443
MA0114.10.0159
MA0115.10.196
MA0116.10.453
MA0117.10.937
MA0119.10.218
MA0122.10.374
MA0124.10.387
MA0125.10.6
MA0131.10.178
MA0135.10.0356
MA0136.12.23025e-7
MA0137.20.264
MA0138.20.693
MA0139.10.887
MA0140.10.0719
MA0141.10.0801
MA0142.10.518
MA0143.10.445
MA0144.10.0137
MA0145.10.00105
MA0146.10.544
MA0147.10.0628
MA0148.10.841
MA0149.10.00254
MA0150.10.00402
MA0152.10.953
MA0153.10.047
MA0154.10.0897
MA0155.10.271
MA0156.19.74304e-4
MA0157.10.153
MA0159.10.0899
MA0160.10.0285
MA0162.10.234
MA0163.10.412
MA0164.10.61
MA0258.10.222
MA0259.10.128



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11753

Novel motifP-value
10.718
100.98
1000.418
1010.606
1020.814
1030.0021
1040.686
1050.36
1060.0356
1070.0759
1080.7
1090.125
110.673
1100.697
1110.912
1120.648
1130.997
1140.068
1150.304
1160.508
1170.953
1180.591
1190.732
120.55
1200.391
1210.353
1220.121
1234.31211e-5
1240.499
1250.813
1260.119
1270.127
1280.436
1290.456
130.289
1300.938
1310.706
1320.379
1330.717
1340.931
1350.0866
1360.208
1370.21
1380.521
1390.764
140.688
1400.874
1410.863
1420.535
1430.00229
1440.481
1450.878
1460.965
1470.574
1480.0674
1490.124
150.455
1500.364
1510.365
1520.00809
1530.391
1540.165
1550.618
1560.491
1570.82
1580.267
1590.298
160.26
1600.901
1610.259
1620.547
1630.794
1640.479
1650.546
1660.701
1670.542
1680.62
1690.0101
170.268
180.168
190.139
20.0808
200.257
210.138
220.0578
230.0101
240.192
250.467
260.813
270.112
280.632
290.845
30.746
300.0893
310.221
320.0653
330.788
340.11
350.982
360.348
370.309
380.465
390.833
40.554
400.755
410.0552
420.58
430.338
440.307
450.152
460.451
470.872
480.915
490.951
50.454
500.845
510.775
520.308
530.148
540.517
550.623
560.752
570.349
580.563
590.0257
60.0783
600.114
610.325
620.205
630.96
640.776
650.286
660.574
670.918
680.714
690.478
70.869
700.35
710.612
720.323
730.0488
740.0854
750.873
760.197
770.132
780.718
790.545
80.706
800.0437
810.844
820.826
830.727
840.281
850.133
860.722
870.453
880.442
890.0195
90.032
900.274
910.671
920.373
930.406
940.587
950.378
960.747
970.822
980.567
990.705



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11753


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
0050687 (cell type cancer)
14566 (disease of cellular proliferation)
162 (cancer)
171 (neuroectodermal tumor)
2994 (germ cell cancer)
3095 (germ cell and embryonal cancer)
4 (disease)

UBERON: Anatomy
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000468 (multi-cellular organism)
0000922 (embryo)
0000923 (germ layer)
0000924 (ectoderm)
0001062 (anatomical entity)
0002050 (embryonic structure)
0002346 (neurectoderm)
0002532 (epiblast (generic))
0005423 (developing anatomical structure)

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10663-109C6&oldid=726768"