FF:11557-120C9: Difference between revisions

Revision as of 15:24, 15 May 2017

Name:	Fibroblast - skin dystrophia myotonica, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11354
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	50 year old adult
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005436

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11354		CAGE		DRX008285		DRR009157

Accession ID Hg19

Library id		BAM		CTSS
CNhs11354		DRZ000582		DRZ001967

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0214
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0297
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.753
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0331
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.024
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0835
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.549
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00784
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.494
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.331
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.523
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.431
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0298
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00105
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.132
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.158
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0835
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.464
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.447
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.619
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.549
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.736
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.799
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11354

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.471
MA0003.1	MA0003.1	0.863
MA0004.1	MA0004.1	0.0252
MA0006.1	MA0006.1	0.506
MA0007.1	MA0007.1	0.575
MA0009.1	MA0009.1	0.284
MA0014.1	MA0014.1	0.24
MA0017.1	MA0017.1	0.397
MA0018.2	MA0018.2	2.45197e-6
MA0019.1	MA0019.1	0.769
MA0024.1	MA0024.1	0.00643
MA0025.1	MA0025.1	0.014
MA0027.1	MA0027.1	0.824
MA0028.1	MA0028.1	0.194
MA0029.1	MA0029.1	0.341
MA0030.1	MA0030.1	0.177
MA0031.1	MA0031.1	0.291
MA0035.2	MA0035.2	0.0154
MA0038.1	MA0038.1	0.0182
MA0039.2	MA0039.2	0.00456
MA0040.1	MA0040.1	0.316
MA0041.1	MA0041.1	0.772
MA0042.1	MA0042.1	0.866
MA0043.1	MA0043.1	4.60705e-4
MA0046.1	MA0046.1	0.728
MA0047.2	MA0047.2	0.413
MA0048.1	MA0048.1	0.0173
MA0050.1	MA0050.1	0.18
MA0051.1	MA0051.1	0.827
MA0052.1	MA0052.1	0.544
MA0055.1	MA0055.1	0.756
MA0057.1	MA0057.1	0.308
MA0058.1	MA0058.1	0.00364
MA0059.1	MA0059.1	0.568
MA0060.1	MA0060.1	1.43701e-8
MA0061.1	MA0061.1	0.0541
MA0062.2	MA0062.2	1.84763e-6
MA0065.2	MA0065.2	0.327
MA0066.1	MA0066.1	0.512
MA0067.1	MA0067.1	0.00554
MA0068.1	MA0068.1	0.366
MA0069.1	MA0069.1	0.0692
MA0070.1	MA0070.1	0.76
MA0071.1	MA0071.1	0.75
MA0072.1	MA0072.1	0.392
MA0073.1	MA0073.1	0.653
MA0074.1	MA0074.1	0.503
MA0076.1	MA0076.1	0.104
MA0077.1	MA0077.1	0.0517
MA0078.1	MA0078.1	0.681
MA0079.2	MA0079.2	0.0764
MA0080.2	MA0080.2	1.20892e-8
MA0081.1	MA0081.1	0.0136
MA0083.1	MA0083.1	0.00461
MA0084.1	MA0084.1	0.921
MA0087.1	MA0087.1	0.989
MA0088.1	MA0088.1	0.911
MA0090.1	MA0090.1	1.24864e-5
MA0091.1	MA0091.1	0.0799
MA0092.1	MA0092.1	0.0168
MA0093.1	MA0093.1	0.0377
MA0099.2	MA0099.2	0.315
MA0100.1	MA0100.1	0.567
MA0101.1	MA0101.1	9.10444e-4
MA0102.2	MA0102.2	0.533
MA0103.1	MA0103.1	6.45547e-5
MA0104.2	MA0104.2	0.0521
MA0105.1	MA0105.1	0.262
MA0106.1	MA0106.1	0.0129
MA0107.1	MA0107.1	0.00309
MA0108.2	MA0108.2	0.214
MA0111.1	MA0111.1	0.081
MA0112.2	MA0112.2	0.00768
MA0113.1	MA0113.1	0.447
MA0114.1	MA0114.1	0.282
MA0115.1	MA0115.1	0.198
MA0116.1	MA0116.1	0.541
MA0117.1	MA0117.1	0.974
MA0119.1	MA0119.1	0.271
MA0122.1	MA0122.1	0.75
MA0124.1	MA0124.1	0.868
MA0125.1	MA0125.1	0.329
MA0131.1	MA0131.1	0.971
MA0135.1	MA0135.1	0.0517
MA0136.1	MA0136.1	1.01745e-9
MA0137.2	MA0137.2	0.908
MA0138.2	MA0138.2	0.612
MA0139.1	MA0139.1	0.962
MA0140.1	MA0140.1	0.163
MA0141.1	MA0141.1	0.855
MA0142.1	MA0142.1	0.228
MA0143.1	MA0143.1	0.585
MA0144.1	MA0144.1	0.906
MA0145.1	MA0145.1	0.246
MA0146.1	MA0146.1	0.698
MA0147.1	MA0147.1	0.369
MA0148.1	MA0148.1	0.785
MA0149.1	MA0149.1	0.927
MA0150.1	MA0150.1	0.0928
MA0152.1	MA0152.1	0.0251
MA0153.1	MA0153.1	0.245
MA0154.1	MA0154.1	0.799
MA0155.1	MA0155.1	0.833
MA0156.1	MA0156.1	3.13762e-6
MA0157.1	MA0157.1	0.868
MA0159.1	MA0159.1	0.865
MA0160.1	MA0160.1	0.0546
MA0162.1	MA0162.1	0.278
MA0163.1	MA0163.1	0.0383
MA0164.1	MA0164.1	0.826
MA0258.1	MA0258.1	0.798
MA0259.1	MA0259.1	0.69

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11354

Novel motif	Logo	P-value
1	1	0.953
10	10	0.65
100	100	0.88
101	101	0.477
102	102	0.0443
103	103	0.949
104	104	0.787
105	105	0.162
106	106	0.64
107	107	0.67
108	108	0.45
109	109	0.409
11	11	0.675
110	110	0.965
111	111	0.497
112	112	0.553
113	113	0.00249
114	114	0.478
115	115	0.582
116	116	0.266
117	117	0.28
118	118	0.66
119	119	0.318
12	12	0.375
120	120	0.738
121	121	0.765
122	122	0.0717
123	123	4.30511e-4
124	124	0.803
125	125	0.414
126	126	0.898
127	127	0.947
128	128	0.815
129	129	0.378
13	13	0.82
130	130	0.426
131	131	0.97
132	132	0.363
133	133	0.196
134	134	0.273
135	135	0.238
136	136	0.0796
137	137	0.159
138	138	0.827
139	139	0.917
14	14	0.196
140	140	0.347
141	141	0.187
142	142	0.858
143	143	0.966
144	144	0.331
145	145	0.558
146	146	0.688
147	147	0.0737
148	148	0.401
149	149	0.0186
15	15	0.615
150	150	0.382
151	151	0.841
152	152	0.732
153	153	0.247
154	154	0.583
155	155	0.0528
156	156	0.653
157	157	0.658
158	158	0.00715
159	159	0.844
16	16	0.0333
160	160	0.263
161	161	0.196
162	162	0.534
163	163	0.677
164	164	0.469
165	165	0.501
166	166	0.148
167	167	0.686
168	168	0.865
169	169	0.0532
17	17	0.55
18	18	0.046
19	19	0.00764
2	2	0.541
20	20	0.363
21	21	0.0225
22	22	0.282
23	23	0.164
24	24	0.308
25	25	0.356
26	26	0.836
27	27	0.836
28	28	0.298
29	29	0.849
3	3	0.572
30	30	0.211
31	31	0.657
32	32	9.06456e-14
33	33	0.543
34	34	0.773
35	35	0.967
36	36	0.122
37	37	0.146
38	38	0.271
39	39	0.354
4	4	0.541
40	40	0.123
41	41	0.686
42	42	0.642
43	43	0.987
44	44	0.502
45	45	0.396
46	46	0.772
47	47	0.422
48	48	0.425
49	49	0.774
5	5	0.506
50	50	0.549
51	51	0.711
52	52	0.838
53	53	0.112
54	54	0.723
55	55	0.175
56	56	0.921
57	57	0.959
58	58	0.192
59	59	0.307
6	6	0.947
60	60	0.493
61	61	0.579
62	62	0.967
63	63	0.583
64	64	0.381
65	65	0.937
66	66	0.289
67	67	0.694
68	68	0.993
69	69	0.962
7	7	0.217
70	70	0.746
71	71	0.331
72	72	0.966
73	73	0.431
74	74	0.0727
75	75	0.929
76	76	0.688
77	77	0.154
78	78	0.262
79	79	0.0516
8	8	0.56
80	80	0.497
81	81	0.891
82	82	0.704
83	83	0.314
84	84	0.28
85	85	0.742
86	86	0.691
87	87	0.971
88	88	0.591
89	89	0.0883
9	9	0.866
90	90	0.778
91	91	0.984
92	92	0.153
93	93	0.737
94	94	0.209
95	95	0.747
96	96	0.927
97	97	0.703
98	98	0.148
99	99	0.0106

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11354

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000253 human fibroblast- skin dystrophia myotonica sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr2:239756671..239756732,+!p1@TWIST2!1.73!162.34!TWIST2;;chr1:197886461..197886558,+!p1@LHX9!1.60!38.78!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.57!96.64!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.56!59.76!TWIST2;;chr9:132427883..132427951,+!p2@PRRX2!1.54!33.49!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.44!34.33!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.44!26.49!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!127.16!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.86!HOXC5;;chr10:119302232..119302265,+!p1@EMX2!1.27!17.59!EMX2;;chr2:176969228..176969260,+!p1@HOXD11!1.25!16.74!HOXD11;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.65!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.23!15.89!HAND2;;chr1:170633348..170633399,+!p2@PRRX1!1.22!20.98!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.20!25.01!TCF12;;chr2:19558373..19558392,-!p1@OSR1!1.19!39.42!OSR1;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.78!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.78!RUNX1T1;;chr5:72744445..72744466,-!p2@FOXD1!1.14!21.19!FOXD1;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.32!TFAP2C;;chr2:176969097..176969109,+!p3@HOXD11!1.13!12.50!HOXD11;;chr19:13134772..13134822,+!p2@NFIX!1.12!18.01!NFIX;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.68!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!1.09!12.29!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.06!10.60!HAND2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.38!KDM5D;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!17.17!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.03!60.61!ID4;;chr10:63809013..63809041,+!p3@ARID5B!1.01!52.35!ARID5B;;chr7:27224842..27224872,-!p1@HOXA11!1.00!8.90!HOXA11;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.69!HOXA9;;chr16:86544113..86544145,+!p1@FOXF1!0.98!10.60!FOXF1;;chr10:63809106..63809127,+!p1@ARID5B!0.97!116.99!ARID5B;;chr11:65687362..65687436,+!p3@DRAP1!0.95!37.09!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.95!7.84!IRX2;;chr1:170633058..170633084,+!p5@PRRX1!0.94!7.63!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.93!40.48!HIF1A;;chr3:141121847..141121868,+!p5@ZBTB38!0.93!11.66!ZBTB38;;chr10:28034739..28034756,-!p1@MKX!0.93!7.42!MKX;;chr8:25902876..25902936,-!p1@EBF2!0.90!6.99!EBF2;;chr19:13135386..13135435,+!p4@NFIX!0.90!6.99!NFIX;;chr2:176969179..176969226,+!p2@HOXD11!0.90!6.99!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.78!HOXD8;;chr7:27224795..27224840,-!p2@HOXA11!0.88!6.57!HOXA11;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.57!ZFY;;chr14:73360799..73360817,-!p1@DPF3!0.87!23.31!DPF3;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.37!HIF1A;;chr15:37392724..37392757,-!p1@MEIS2!0.85!29.67!MEIS2;;chr2:176969124..176969155,+!p5@HOXD11!0.84!5.93!HOXD11;;chr3:147111231..147111281,+!p3@ZIC1!0.84!5.93!ZIC1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.93!RUNX1T1;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.57!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.83!5.72!EMX2;;chr10:31610110..31610159,+!p2@ZEB1!0.83!5.72!ZEB1;;chr8:49833948..49833973,-!p2@SNAI2!0.82!37.94!SNAI2;;chr12:80085061..80085119,-!p6@PAWR!0.82!9.33!PAWR;;chr12:54402745..54402788,+!p1@HOXC8!0.81!5.51!HOXC8;;chr16:31076332..31076388,-!p3@ZNF668!0.81!5.51!ZNF668;;chr5:142780189..142780223,-!p6@NR3C1!0.80!5.30!NR3C1;;chr1:170632250..170632277,+!p7@PRRX1!0.80!5.30!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.79!17.59!AHRR;;chr6:10415276..10415341,-!p2@TFAP2A!0.79!6.36!TFAP2A;;chr14:24837368..24837401,+!p1@NFATC4!0.78!12.50!NFATC4;;chr10:63809077..63809089,+!p5@ARID5B!0.78!11.66!ARID5B;;chr4:4861385..4861398,+!p1@MSX1!0.77!15.68!MSX1;;chr1:170633262..170633285,+!p3@PRRX1!0.77!5.72!PRRX1;;chr5:142780237..142780261,-!p7@NR3C1!0.77!4.87!NR3C1;;chr7:27213893..27213954,-!p1@HOXA10!0.77!4.87!HOXA10;;chr8:49833978..49833996,-!p1@SNAI2!0.75!104.48!SNAI2;;chr10:31607702..31607755,+!p3@ZEB1!0.75!5.51!ZEB1;;chr10:119302508..119302559,+!p5@EMX2!0.75!4.66!EMX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.66!HOXC5;;chr7:27192185..27192209,-!p1@HOXA3!0.75!4.66!HOXA3;;chr2:119604456..119604501,-!p2@EN1!0.74!4.45!EN1;;chr12:54393880..54393962,+!p1@HOXC9!0.74!4.45!HOXC9;;chr1:170632115..170632136,+!p9@PRRX1!0.74!4.45!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.44!EBF1;;chr16:54964740..54964789,+!p1@IRX5!0.72!6.36!IRX5;;chr3:157823517..157823562,-!p1@SHOX2!0.72!4.66!SHOX2;;chr19:31840130..31840160,-!p2@TSHZ3!0.71!6.78!TSHZ3;;chr19:50432453..50432468,+!p1@ATF5!0.70!257.29!ATF5;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.63!TBX18;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.03!HOXA9;;chr3:147111198..147111225,+!p4@ZIC1!0.70!4.03!ZIC1;;chr12:53614115..53614154,-!p1@RARG!0.69!23.31!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.69!18.44!ZNF521;;chr16:54320101..54320125,-!p4@IRX3!0.68!5.72!IRX3;;chr15:37392534..37392562,-!p10@MEIS2!0.68!4.24!MEIS2;;chr1:119530857..119530884,-!p4@TBX15!0.68!3.81!TBX15;;chr3:147127142..147127168,+!p1@ZIC1!0.68!3.81!ZIC1;;chr5:3595977..3595999,+!p1@IRX1!0.68!3.81!IRX1;;chr14:62162224..62162254,+!p1@HIF1A!0.67!619.90!HIF1A;;chr2:191878874..191878938,-!p1@STAT1!0.67!230.37!STAT1;;chr9:16870659..16870675,-!p2@BNC2!0.67!4.66!BNC2;;chr1:158969752..158969780,+!p6@IFI16!0.66!6.78!IFI16;;chr3:21792585..21792625,-!p2@ZNF385D!0.66!4.03!ZNF385D;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.60!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.66!3.60!DLX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.66!3.60!CREB3L1;;chr14:75894714..75894733,+!p1@JDP2!0.65!114.66!JDP2;;chr12:48298765..48298783,-!p2@VDR!0.65!8.05!VDR;;chr6:1389789..1389821,+!p1@FOXF2!0.65!5.09!FOXF2;;chr16:54320617..54320643,-!p3@IRX3!0.65!4.66!IRX3;;chr15:83953397..83953425,-!p1@BNC1!0.65!4.03!BNC1;;chr15:37390850..37390909,-!p3@MEIS2!0.64!7.21!MEIS2;;chr3:24536253..24536328,-!p1@THRB!0.64!6.99!THRB;;chr5:72743793..72743855,-!p4@FOXD1!0.64!4.03!FOXD1;;chr3:128212033..128212051,-!p1@GATA2!0.64!3.39!GATA2;;chr1:170632723..170632739,+!p8@PRRX1!0.64!3.39!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.63!14.20!SIX1;;chr8:22550982..22550999,-!p1@EGR3!0.63!10.60!EGR3;;chr1:158979872..158979898,+!p3@IFI16!0.62!11.23!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!0.62!5.72!TFAP2A;;chr6:100912785..100912822,-!p1@SIM1!0.62!3.18!SIM1;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.18!TBX15;;chr10:119302268..119302282,+!p4@EMX2!0.62!3.18!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.62!3.18!MKX;;chr3:138665937..138665968,-!p1@FOXL2!0.62!3.18!FOXL2;;chr19:13106214..13106382,+!p1@NFIX!0.61!84.98!NFIX;;chr2:145275162..145275202,-!p2@ZEB2!0.61!21.62!ZEB2;;chr15:42749722..42749739,-!p2@ZFP106!0.61!6.15!ZFP106;;chr12:80084279..80084293,-!p8@PAWR!0.61!5.51!PAWR;;chr5:92918919..92918942,+!p1@NR2F1!0.60!15.89!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!0.60!9.11!HMGA2;;chr10:63809090..63809097,+!p7@ARID5B!0.60!4.45!ARID5B;;chr15:37390374..37390422,-!p9@MEIS2!0.60!3.81!MEIS2;;chr12:114843940..114843955,-!p2@TBX5!0.60!2.97!TBX5;;chr1:170632137..170632172,+!p10@PRRX1!0.60!2.97!PRRX1;;chr3:128206762..128206781,-!p2@GATA2!0.59!21.41!GATA2;;chr11:65686732..65686756,+!p2@DRAP1!0.59!14.62!DRAP1;;chr15:37392703..37392717,-!p8@MEIS2!0.59!4.45!MEIS2;;chr18:19749541..19749557,+!p1@GATA6!0.58!10.38!GATA6;;chr7:42276787..42276815,-!p1@GLI3!0.58!8.69!GLI3;;chr8:72756213..72756243,-!p5@MSC!0.58!3.81!MSC;;chr2:46524537..46524553,+!p1@EPAS1!0.57!337.82!EPAS1;;chr12:115121962..115121987,-!p1@TBX3!0.57!27.76!TBX3;;chr2:74229812..74229867,+!p1@TET3!0.57!7.84!TET3;;chr11:65686802..65686818,+!p6@DRAP1!0.57!5.30!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.57!2.97!GLIS1;;chr19:47523058..47523114,+!p1@NPAS1!0.57!2.76!NPAS1;;chr7:27196267..27196311,-!p1@HOXA7!0.57!2.76!HOXA7;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.76!FOXL1;;chr12:54394309..54394336,+!p2@HOXC9!0.57!2.76!HOXC9;;chr7:28448965..28448994,+!p2@CREB5!0.56!11.02!CREB5;;chr17:1959369..1959388,+!p2@HIC1!0.56!8.05!HIC1;;chr9:16870710..16870763,-!p1@BNC2!0.56!5.09!BNC2;;chr15:37391588..37391604,-!p11@MEIS2!0.56!3.60!MEIS2;;chr3:141105705..141105770,+!p4@ZBTB38!0.56!3.39!ZBTB38;;chr1:23696448..23696453,-!p5@ZNF436!0.56!3.39!ZNF436;;chr15:37392616..37392638,-!p2@MEIS2!0.55!9.54!MEIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.55!7.63!TWIST1;;chr19:13134457..13134462,+!p5@NFIX!0.55!5.09!NFIX;;chr16:54320646..54320672,-!p2@IRX3!0.55!4.24!IRX3;;chr15:37390482..37390572,-!p7@MEIS2!0.55!3.81!MEIS2;;chr10:28035133..28035148,-!p3@MKX!0.55!2.54!MKX;;chr11:46333934..46333963,+!p5@CREB3L1!0.55!2.54!CREB3L1;;chr2:119605214..119605230,-!p1@EN1!0.55!2.54!EN1;;chr16:54320675..54320715,-!p1@IRX3!0.54!6.15!IRX3;;chr1:158979792..158979814,+!p2@IFI16!0.53!28.82!IFI16;;chr19:57078972..57079027,+!p2@ZNF470!0.53!4.03!ZNF470;;chr20:51588873..51588953,+!p1@TSHZ2!0.53!3.39!TSHZ2;;chr2:46612334..46612349,+!p6@EPAS1!0.53!3.39!EPAS1;;chr7:150946015..150946070,-!p3@SMARCD3!0.52!5.93!SMARCD3;;chr12:104531823..104531849,-!p5@NFYB!0.52!5.72!NFYB;;chr19:47922750..47922795,-!p1@MEIS3!0.52!4.24!MEIS3;;chr15:37392593..37392607,-!p13@MEIS2!0.52!2.97!MEIS2;;chr6:85473156..85473210,-!p2@TBX18!0.52!2.97!TBX18;;chr16:54964899..54964914,+!p2@IRX5!0.52!2.33!IRX5;;chr10:119301928..119301955,+!p7@EMX2!0.52!2.33!EMX2;;chr12:54447637..54447659,+!p4@HOXC4!0.52!2.33!HOXC4;;chr1:119530706..119530736,-!p3@TBX15!0.52!2.33!TBX15;;chr2:172949484..172949522,+!p1@DLX1!0.52!2.33!DLX1;;chr12:124873357..124873401,-!p1@NCOR2!0.51!34.12!NCOR2;;chr1:164528410..164528428,+!p1@PBX1!0.51!21.83!PBX1;;chr15:60884706..60884743,-!p1@RORA!0.51!14.84!RORA;;chr15:37393449..37393528,-!p4@MEIS2!0.51!7.42!MEIS2;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.57!ZNF281;;chr19:13136130..13136165,+!p6@NFIX!0.51!3.18!NFIX;;chr10:63853436..63853442,+!p4@ARID5B!0.50!14.84!ARID5B;;chr12:104532004..104532033,-!p4@NFYB!0.50!7.42!NFYB;;chr14:62193465..62193490,+!p7@HIF1A!0.50!3.39!HIF1A;;chr11:46299186..46299195,+!p3@CREB3L1!0.50!2.54!CREB3L1;;chr1:8938709..8938720,-!p3@ENO1!0.49!136.70!ENO1;;chr10:31608127..31608156,+!p1@ZEB1!0.49!51.92!ZEB1;;chr2:28616337..28616355,+!p2@FOSL2!0.49!49.17!FOSL2;;chr12:48298785..48298828,-!p1@VDR!0.49!14.41!VDR;;chr5:139487608..139487663,+!p3@PURA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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=

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FF:11557-120C9: Difference between revisions

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Revision as of 15:24, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0