FF:11215-116A9: Difference between revisions

Revision as of 14:53, 15 May 2017

Name:	Retinal Pigment Epithelial Cells, donor0
Species:	Human (Homo sapiens)
Library ID:	CNhs10842
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	retina
dev stage	NA
sex	NA
age	NA
cell type	retinal pigment epithelial cell
cell line	NA
company	Sciencell
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	6545
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005496

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10842		CAGE		DRX008440		DRR009312

Accession ID Hg19

Library id		BAM		CTSS
CNhs10842		DRZ000737		DRZ002122

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.127
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.443
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0737
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.172
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.402
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.252
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.175
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.341
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0219
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.458
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0991
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	-0.0365
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0991
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10842

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0446
MA0003.1	MA0003.1	0.95
MA0004.1	MA0004.1	0.0194
MA0006.1	MA0006.1	0.278
MA0007.1	MA0007.1	0.968
MA0009.1	MA0009.1	0.942
MA0014.1	MA0014.1	0.484
MA0017.1	MA0017.1	0.625
MA0018.2	MA0018.2	0.294
MA0019.1	MA0019.1	0.103
MA0024.1	MA0024.1	3.57349e-9
MA0025.1	MA0025.1	0.323
MA0027.1	MA0027.1	0.458
MA0028.1	MA0028.1	0.885
MA0029.1	MA0029.1	0.372
MA0030.1	MA0030.1	0.0102
MA0031.1	MA0031.1	0.0203
MA0035.2	MA0035.2	0.467
MA0038.1	MA0038.1	6.19709e-5
MA0039.2	MA0039.2	0.027
MA0040.1	MA0040.1	0.488
MA0041.1	MA0041.1	0.852
MA0042.1	MA0042.1	0.605
MA0043.1	MA0043.1	0.187
MA0046.1	MA0046.1	0.324
MA0047.2	MA0047.2	0.0244
MA0048.1	MA0048.1	0.547
MA0050.1	MA0050.1	1.25041e-11
MA0051.1	MA0051.1	1.25972e-5
MA0052.1	MA0052.1	0.994
MA0055.1	MA0055.1	0.00586
MA0057.1	MA0057.1	0.467
MA0058.1	MA0058.1	0.00696
MA0059.1	MA0059.1	0.0702
MA0060.1	MA0060.1	1.33316e-21
MA0061.1	MA0061.1	3.42922e-6
MA0062.2	MA0062.2	0.00229
MA0065.2	MA0065.2	0.0535
MA0066.1	MA0066.1	0.245
MA0067.1	MA0067.1	0.329
MA0068.1	MA0068.1	0.811
MA0069.1	MA0069.1	0.411
MA0070.1	MA0070.1	0.0923
MA0071.1	MA0071.1	0.204
MA0072.1	MA0072.1	0.459
MA0073.1	MA0073.1	0.483
MA0074.1	MA0074.1	0.985
MA0076.1	MA0076.1	0.79
MA0077.1	MA0077.1	0.0195
MA0078.1	MA0078.1	0.89
MA0079.2	MA0079.2	0.505
MA0080.2	MA0080.2	1.14884e-12
MA0081.1	MA0081.1	0.00246
MA0083.1	MA0083.1	0.047
MA0084.1	MA0084.1	0.04
MA0087.1	MA0087.1	0.45
MA0088.1	MA0088.1	0.218
MA0090.1	MA0090.1	0.00558
MA0091.1	MA0091.1	0.109
MA0092.1	MA0092.1	0.733
MA0093.1	MA0093.1	0.018
MA0099.2	MA0099.2	0.906
MA0100.1	MA0100.1	0.426
MA0101.1	MA0101.1	2.89335e-4
MA0102.2	MA0102.2	0.0079
MA0103.1	MA0103.1	0.0336
MA0104.2	MA0104.2	0.121
MA0105.1	MA0105.1	1.081e-4
MA0106.1	MA0106.1	0.406
MA0107.1	MA0107.1	9.24164e-6
MA0108.2	MA0108.2	3.92817e-5
MA0111.1	MA0111.1	0.584
MA0112.2	MA0112.2	0.281
MA0113.1	MA0113.1	0.607
MA0114.1	MA0114.1	0.0295
MA0115.1	MA0115.1	0.165
MA0116.1	MA0116.1	0.017
MA0117.1	MA0117.1	0.267
MA0119.1	MA0119.1	0.86
MA0122.1	MA0122.1	0.239
MA0124.1	MA0124.1	0.39
MA0125.1	MA0125.1	0.0537
MA0131.1	MA0131.1	0.388
MA0135.1	MA0135.1	0.79
MA0136.1	MA0136.1	4.50653e-10
MA0137.2	MA0137.2	0.0229
MA0138.2	MA0138.2	0.915
MA0139.1	MA0139.1	0.198
MA0140.1	MA0140.1	0.636
MA0141.1	MA0141.1	0.0625
MA0142.1	MA0142.1	0.989
MA0143.1	MA0143.1	0.806
MA0144.1	MA0144.1	0.00266
MA0145.1	MA0145.1	0.303
MA0146.1	MA0146.1	0.724
MA0147.1	MA0147.1	0.379
MA0148.1	MA0148.1	0.0376
MA0149.1	MA0149.1	0.505
MA0150.1	MA0150.1	0.0957
MA0152.1	MA0152.1	0.94
MA0153.1	MA0153.1	0.667
MA0154.1	MA0154.1	0.238
MA0155.1	MA0155.1	0.184
MA0156.1	MA0156.1	2.33307e-10
MA0157.1	MA0157.1	0.0782
MA0159.1	MA0159.1	0.144
MA0160.1	MA0160.1	0.204
MA0162.1	MA0162.1	0.468
MA0163.1	MA0163.1	0.0484
MA0164.1	MA0164.1	0.202
MA0258.1	MA0258.1	0.271
MA0259.1	MA0259.1	0.625

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10842

Novel motif	Logo	P-value
1	1	0.285
10	10	0.00823
100	100	0.266
101	101	0.364
102	102	0.419
103	103	0.932
104	104	0.63
105	105	0.407
106	106	0.00172
107	107	0.435
108	108	0.936
109	109	0.369
11	11	0.851
110	110	0.788
111	111	0.0385
112	112	0.00104
113	113	0.0301
114	114	0.0429
115	115	0.88
116	116	0.716
117	117	0.0329
118	118	0.575
119	119	0.145
12	12	0.671
120	120	0.635
121	121	0.751
122	122	0.447
123	123	0.0709
124	124	0.271
125	125	0.893
126	126	0.32
127	127	0.933
128	128	0.168
129	129	0.604
13	13	0.485
130	130	0.0101
131	131	0.116
132	132	0.975
133	133	0.0729
134	134	0.783
135	135	0.0313
136	136	0.143
137	137	0.245
138	138	2.62229e-4
139	139	0.00773
14	14	0.571
140	140	0.0287
141	141	0.232
142	142	0.734
143	143	0.151
144	144	0.249
145	145	0.386
146	146	0.902
147	147	0.253
148	148	0.111
149	149	0.904
15	15	0.794
150	150	0.48
151	151	0.554
152	152	0.997
153	153	0.469
154	154	0.38
155	155	0.237
156	156	0.35
157	157	0.0557
158	158	0.0996
159	159	0.651
16	16	0.685
160	160	0.894
161	161	0.877
162	162	0.253
163	163	0.649
164	164	0.0287
165	165	0.0987
166	166	0.321
167	167	0.669
168	168	0.238
169	169	0.383
17	17	0.878
18	18	0.0523
19	19	0.419
2	2	0.476
20	20	0.709
21	21	0.416
22	22	0.605
23	23	0.0398
24	24	0.421
25	25	0.465
26	26	0.752
27	27	0.841
28	28	0.597
29	29	0.946
3	3	0.023
30	30	0.0744
31	31	0.748
32	32	0.007
33	33	0.405
34	34	0.601
35	35	0.262
36	36	0.904
37	37	0.411
38	38	0.84
39	39	0.848
4	4	0.863
40	40	0.0343
41	41	0.306
42	42	0.171
43	43	0.094
44	44	0.839
45	45	0.381
46	46	0.026
47	47	0.819
48	48	0.971
49	49	0.317
5	5	0.123
50	50	0.352
51	51	0.649
52	52	0.656
53	53	0.592
54	54	0.88
55	55	0.12
56	56	0.827
57	57	0.682
58	58	0.00305
59	59	0.345
6	6	0.765
60	60	0.012
61	61	0.888
62	62	0.00225
63	63	0.125
64	64	0.416
65	65	0.262
66	66	0.0252
67	67	0.958
68	68	0.77
69	69	0.0649
7	7	0.961
70	70	0.0757
71	71	0.0954
72	72	0.182
73	73	0.427
74	74	0.243
75	75	0.283
76	76	0.14
77	77	0.307
78	78	0.599
79	79	0.0306
8	8	0.707
80	80	0.157
81	81	0.209
82	82	0.0841
83	83	0.0389
84	84	0.921
85	85	0.0442
86	86	0.187
87	87	0.147
88	88	0.735
89	89	0.972
9	9	0.268
90	90	0.714
91	91	0.0219
92	92	0.0174
93	93	0.635
94	94	0.0768
95	95	0.374
96	96	0.45
97	97	0.975
98	98	0.103
99	99	0.0502

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10842

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000158 human retinal pigment epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000147 (pigment cell)
0000255 (eukaryotic cell)
0000149 (visual pigment cell)
0002586 (retinal pigment epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0005388 (photoreceptor array)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0001781 (layer of retina)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0001782 (pigmented layer of retina)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000158 (human retinal pigment epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

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 |def=
 |expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.18!152.07!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.90!160.79!C11orf9;;chr14:57272369..57272391,-!p2@OTX2!1.85!70.52!OTX2;;chr9:126774018..126774055,+!p1@LHX2!1.84!67.45!LHX2;;chr18:56940611..56940660,-!p1@RAX!1.64!42.57!RAX;;chr2:45168875..45168916,+!p1@SIX3!1.57!36.16!SIX3;;chr2:45168834..45168847,+!p2@SIX3!1.53!33.08!SIX3;;chr6:1312325..1312340,+!p1@FOXQ1!1.52!51.03!FOXQ1;;chr11:61522844..61522875,+!p2@C11orf9!1.42!25.13!C11orf9;;chr16:1031762..1031781,+!p1@SOX8!1.38!23.08!SOX8;;chr12:66218255..66218304,+!p3@HMGA2!1.35!56.42!HMGA2;;chr9:126774058..126774081,+!p3@LHX2!1.33!20.26!LHX2;;chr2:45169193..45169219,+!p3@SIX3!1.32!20.00!SIX3;;chr22:38380543..38380569,-!p1@SOX10!1.29!18.46!SOX10;;chr15:42749722..42749739,-!p2@ZFP106!1.26!30.77!ZFP106;;chr3:52001448..52001478,-!p2@PCBP4!1.24!220.80!PCBP4;;chr9:126773880..126773895,+!p2@LHX2!1.23!15.90!LHX2;;chr1:2985760..2985774,+!p1@PRDM16!1.21!15.13!PRDM16;;chr6:34204921..34204939,+!p3@HMGA1!1.16!394.93!HMGA1;;chr7:100065686..100065701,-!p2@TSC22D4!1.15!13.08!TSC22D4;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.08!SOX11;;chr6:34204672..34204692,+!p1@HMGA1!1.14!1424.32!HMGA1;;chr18:56940663..56940691,-!p2@RAX!1.12!12.05!RAX;;chr12:66218212..66218244,+!p5@HMGA2!1.10!16.93!HMGA2;;chr14:57277098..57277116,-!p3@OTX2!1.10!11.54!OTX2;;chr5:72744445..72744466,-!p2@FOXD1!1.09!18.98!FOXD1;;chr19:48773337..48773339,+!p2@ZNF114!1.08!11.03!ZNF114;;chr3:52001426..52001447,-!p3@PCBP4!1.05!29.49!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!1.04!19.23!HMGA2;;chr3:25469724..25469773,+!p1@RARB!1.02!13.85!RARB;;chr11:31832658..31832681,-!p1@PAX6!1.02!9.49!PAX6;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.31!NR2F1;;chr2:45169143..45169167,+!p5@SIX3!1.01!9.23!SIX3;;chr17:7492684..7492778,-!p2@SOX15!1.00!19.49!SOX15;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.62!FOSL1;;chr3:69915385..69915438,+!p3@MITF!0.99!8.72!MITF;;chr2:45169179..45169190,+!p8@SIX3!0.98!8.46!SIX3;;chr15:83953397..83953425,-!p1@BNC1!0.96!9.49!BNC1;;chr4:299227..299272,-!p1@ZNF732!0.96!8.21!ZNF732;;chr12:66218378..66218401,+!p6@HMGA2!0.95!12.57!HMGA2;;chr3:25470156..25470227,+!p2@RARB!0.95!7.95!RARB;;chr2:45168856..45168867,+!p7@SIX3!0.93!7.44!SIX3;;chr4:54966328..54966335,+!p1@GSX2!0.93!7.44!GSX2;;chr7:64838786..64838809,+!p2@ZNF92!0.88!39.24!ZNF92;;chr6:19837592..19837621,+!p1@ID4!0.87!41.29!ID4;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.54!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.87!14.62!SOHLH2;;chr3:69915369..69915381,+!p4@MITF!0.85!6.15!MITF;;chr22:41763452..41763466,+!p2@TEF!0.82!5.64!TEF;;chr17:70117153..70117174,+!p1@SOX9!0.81!61.29!SOX9;;chr3:25470062..25470084,+!p4@RARB!0.81!5.39!RARB;;chr2:71127699..71127744,+!p1@VAX2!0.80!11.54!VAX2;;chr11:65686802..65686818,+!p6@DRAP1!0.78!9.23!DRAP1;;chr15:66994615..66994630,+!p3@SMAD6!0.78!7.44!SMAD6;;chr15:66994663..66994680,+!p1@SMAD6!0.77!12.31!SMAD6;;chr3:52001396..52001425,-!p4@PCBP4!0.77!9.23!PCBP4;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.87!OTX1;;chr13:72441315..72441454,-!p1@DACH1!0.76!10.00!DACH1;;chr12:54785074..54785122,-!p2@ZNF385A!0.76!7.69!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!0.75!136.18!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.75!16.67!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.82!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!0.74!6.41!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.87!HMGA2;;chr1:41827095..41827155,+!p1@FOXO6!0.73!6.15!FOXO6;;chr3:141121847..141121868,+!p5@ZBTB38!0.71!6.67!ZBTB38;;chr12:66218573..66218596,+!p7@HMGA2!0.71!6.41!HMGA2;;chr5:92918860..92918871,+!p10@NR2F1!0.71!4.62!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.71!4.10!NR2F1;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.10!FOSL1;;chr9:128509663..128509715,+!p1@PBX3!0.70!15.13!PBX3;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.39!HMGA2;;chr13:37494275..37494304,-!p2@SMAD9!0.69!3.85!SMAD9;;chr7:101917407..101917443,+!p3@CUX1!0.69!3.85!CUX1;;chr2:45168959..45168990,+!p6@SIX3!0.69!3.85!SIX3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.69!3.85!PEG3;;chr11:65686732..65686756,+!p2@DRAP1!0.68!17.95!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.13!BCL3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!14.87!BHLHE41;;chr14:21994337..21994442,-!p1@SALL2!0.67!11.28!SALL2;;chr8:86089369..86089408,+!p1@E2F5!0.66!10.77!E2F5;;chr14:57277163..57277168,-!p4@OTX2!0.66!3.59!OTX2;;chr16:86612320..86612394,+!p1@FOXL1!0.66!3.59!FOXL1;;chr2:45168997..45169020,+!p4@SIX3!0.66!3.59!SIX3;;chr2:5832493..5832507,+!p2@SOX11!0.66!3.59!SOX11;;chr3:128206762..128206781,-!p2@GATA2!0.65!25.13!GATA2;;chr15:66994561..66994597,+!p2@SMAD6!0.65!9.23!SMAD6;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.23!PPARG;;chr20:6748325..6748352,+!p1@BMP2!0.64!5.13!BMP2;;chr19:48325184..48325211,+!p1@CRX!0.64!3.33!CRX;;chr12:125003087..125003141,-!p4@NCOR2!0.63!4.36!NCOR2;;chr3:12330560..12330579,+!p1@PPARG!0.63!3.85!PPARG;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.39!ZNF702P;;chr13:37494248..37494260,-!p3@SMAD9!0.61!3.08!SMAD9;;chr15:66994718..66994729,+!p4@SMAD6!0.61!3.08!SMAD6;;chr17:7493405..7493419,-!p1@SOX15!0.61!3.08!SOX15;;chr20:42295713..42295738,+!p2@MYBL2!0.60!21.03!MYBL2;;chr9:14082760..14082775,-!p6@NFIB!0.60!5.39!NFIB;;chr19:49140609..49140643,-!p1@DBP!0.59!19.49!DBP;;chr15:37392724..37392757,-!p1@MEIS2!0.59!15.64!MEIS2;;chr1:935467..935484,-!p1@HES4!0.58!14.87!HES4;;chr19:22034809..22034878,-!p2@ZNF43!0.58!11.54!ZNF43;;chr19:49864746..49864780,-!p2@TEAD2!0.58!4.10!TEAD2;;chr12:26277817..26277863,-!p2@BHLHE41!0.58!4.10!BHLHE41;;chr10:48355030..48355090,+!p1@ZNF488!0.58!3.85!ZNF488;;chr15:67391010..67391046,+!p13@SMAD3!0.58!2.82!SMAD3;;chr2:100721328..100721348,-!p4@AFF3!0.58!2.82!AFF3;;chr2:45169172..45169177,+!p11@SIX3!0.58!2.82!SIX3;;chr2:45169233..45169244,+!p10@SIX3!0.58!2.82!SIX3;;chr19:47538560..47538591,+!p2@NPAS1!0.58!2.82!NPAS1;;chr19:49140595..49140607,-!p3@DBP!0.57!4.10!DBP;;chr5:174151553..174151610,+!p1@MSX2!0.56!4.87!MSX2;;chr17:38465413..38465438,+!p5@RARA!0.56!4.62!RARA;;chr15:66994885..66994904,+!p7@SMAD6!0.55!2.56!SMAD6;;chr11:17741084..17741094,+!p3@MYOD1!0.55!2.56!MYOD1;;chr11:17741111..17741124,+!p1@MYOD1!0.55!2.56!MYOD1;;chr3:12329339..12329356,+!p5@PPARG!0.55!2.56!PPARG;;chr9:126774091..126774098,+!p4@LHX2!0.55!2.56!LHX2;;chr5:133450365..133450444,+!p1@TCF7!0.54!13.85!TCF7;;chr17:41623692..41623715,-!p1@ETV4!0.54!13.08!ETV4;;chr8:86089417..86089440,+!p2@E2F5!0.54!5.64!E2F5;;chr19:22817119..22817145,+!p1@ZNF492!0.54!4.62!ZNF492;;chr19:57183114..57183145,-!p1@ZNF835!0.54!2.82!ZNF835;;chr20:42295745..42295765,+!p1@MYBL2!0.53!50.52!MYBL2;;chr15:67357924..67357952,+!p2@SMAD3!0.53!20.00!SMAD3;;chr6:31869828..31869880,-!p1@ZBTB12!0.53!5.13!ZBTB12;;chr12:66218003..66218018,+!p9@HMGA2!0.53!3.08!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.52!242.86!ID1;;chr10:77161504..77161530,-!p1@ZNF503!0.52!39.49!ZNF503;;chr5:72744562..72744573,-!p3@FOXD1!0.52!3.08!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.52!2.31!MSX2;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.31!TCF21;;chr12:125003168..125003180,-!p15@NCOR2!0.52!2.31!NCOR2;;chr12:66218420..66218439,+!p12@HMGA2!0.52!2.31!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.52!2.31!HMGA2;;chr1:23885981..23886002,-!p1@ID3!0.51!521.88!ID3;;chr5:92918956..92918969,+!p4@NR2F1!0.51!2.56!NR2F1;;chr20:2673383..2673441,+!p1@EBF4!0.50!3.85!EBF4;;chr17:38465441..38465481,+!p6@RARA!0.50!2.82!RARA;;chr12:26277929..26277955,-!p3@BHLHE41!0.49!3.33!BHLHE41;;chr15:37392094..37392116,-!p6@MEIS2!0.49!2.82!MEIS2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.49!2.82!L3MBTL4;;chr6:155635583..155635644,-!p1@TFB1M!0.48!35.39!TFB1M;;chr7:64838754..64838778,+!p1@ZNF92!0.48!25.90!ZNF92;;chr1:247171347..247171366,-!p2@ZNF695!0.48!4.36!ZNF695;;chr12:125002861..125002894,-!p7@NCOR2!0.48!3.33!NCOR2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.48!2.05!ZSCAN1;;chr1:2985566..2985608,+!p3@PRDM16!0.48!2.05!PRDM16;;chr1:2985726..2985752,+!p2@PRDM16!0.48!2.05!PRDM16;;chr22:31739291..31739311,-!p2@PATZ1!0.48!2.05!PATZ1;;chr1:8938766..8938774,-!p2@ENO1!0.47!184.90!ENO1;;chr12:2986275..2986363,-!p1@FOXM1!0.47!26.41!FOXM1;;chr16:88519669..88519726,+!p1@ZFPM1!0.47!23.59!ZFPM1;;chr12:124873852..124873881,-!p3@NCOR2!0.47!15.64!NCOR2;;chr11:46299199..46299233,+!p1@CREB3L1!0.47!13.34!CREB3L1;;chr7:150065733..150065752,+!p4@REPIN1,p4@ZNF775!0.47!2.56!ZNF775;;chr15:37390374..37390422,-!p9@MEIS2!0.47!2.56!MEIS2;;chr19:23299814..23299844,+!p1@ZNF730!0.47!2.56!ZNF730;;chr12:54785054..54785072,-!p4@ZNF385A!0.47!2.31!ZNF385A;;chr1:170632285..170632309,+!p1@PRRX1!0.47!2.31!PRRX1;;chr20:32274179..32274213,-!p1@E2F1!0.46!16.93!E2F1;;chr7:150076406..150076456,+!p1@ZNF775!0.46!11.54!ZNF775;;chr17:41277372..41277418,-!p1@BRCA1!0.46!8.98!BRCA1;;chr2:46524897..46524911,+!p2@EPAS1!0.46!6.67!EPAS1;;chr19:20188776..20188826,+!p1@ZNF90!0.46!6.41!ZNF90;;chr17:41623009..41623053,-!p4@ETV4!0.46!3.59!ETV4;;chr4:57522166..57522260,-!p2@HOPX!0.46!2.31!HOPX;;chr12:66218836..66218888,+!p1@HMGA2!0.45!23.59!HMGA2;;chr3:141747459..141747475,-!p1@TFDP2!0.45!20.77!TFDP2;;chr12:2986206..2986258,-!p2@FOXM1!0.45!14.87!FOXM1;;chr10:77161533..77161546,-!p2@ZNF503!0.45!9.49!ZNF503;;chr17:38498594..38498661,+!p2@RARA!0.45!7.95!RARA;;chr8:67525443..67525459,-!p2@MYBL1!0.45!3.08!MYBL1;;chr6:1312155..1312187,+!p2@FOXQ1!0.45!1.80!FOXQ1;;chr7:101917447..101917479,+!p4@CUX1!0.45!1.80!CUX1;;chr17:46132044..46132080,+!p4@NFE2L1!0.45!1.80!NFE2L1;;chr19:22605136..22605154,-!p1@ZNF98!0.45!1.80!ZNF98;;chr9:22447422..22447483,+!p1@DMRTA1!0.45!1.80!DMRTA1;;chr2:145275947..145275981,-!p10@ZEB2!0.45!1.80!ZEB2;;chr2:63277978..63277995,+!p2@OTX1!0.45!1.80!OTX1;;chr3:141121820..141121838,+!p9@ZBTB38!0.45!1.80!ZBTB38;;chr3:141150883..141150961,+!p6@ZBTB38!0.45!1.80!ZBTB38;;chr11:31832610..31832639,-!p5@PAX6!0.45!1.80!PAX6;;chr12:66218469..66218477,+!p16@HMGA2!0.45!1.80!HMGA2;;chr19:49140255..49140268,-!p9@DBP!0.45!1.80!DBP;;chr19:58545369..58545404,+!p2@ZSCAN1!0.45!1.80!ZSCAN1;;chr3:193853927..193853944,+!p1@HES1!0.44!82.32!HES1;;chr13:73633131..73633149,+!p1@KLF5!0.44!26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12!1.03!ZNF217;;chr22:38598042..38598052,+!p4@MAFF!0.12!1.03!MAFF;;chr9:2015275..2015287,+!p8@SMARCA2!0.12!1.03!SMARCA2;;chr6:144329531..144329546,-!p5@PLAGL1!0.12!1.03!PLAGL1;;chr15:77713299..77713316,+!p3@HMG20A!0.12!1.03!HMG20A;;chr15:35280509..35280520,-!p2@ZNF770!0.12!0.77!ZNF770;;chr15:71184837..71184877,-!p2@THAP10!0.12!0.77!THAP10;;chr15:96869114..96869160,+!p11@NR2F2!0.12!0.77!NR2F2;;chr19:37958404..37958434,+!p2@ZNF570!0.12!0.77!ZNF570;;chr3:169490606..169490621,+!p3@MYNN!0.12!0.77!MYNN;;chr12:80083722..80083766,-!p12@PAWR!0.12!0.77!PAWR;;chr13:74708269..74708291,-!p7@KLF12!0.12!0.77!KLF12;;chr14:21566540..21566580,-!p2@ZNF219!0.12!0.77!ZNF219;;chr8:128747661..128747703,+!p6@MYC!0.12!0.77!MYC;;chr8:128747757..128747800,+!p7@MYC!0.12!0.77!MYC;;chr6:45296048..45296082,+!p1@RUNX2!0.12!0.51!RUNX2;;chr8:146024397..146024416,+!p2@ZNF517!0.12!0.51!ZNF517;;chr4:149363544..149363583,-!p3@NR3C2!0.12!0.51!NR3C2;;chr15:37392687..37392698,-!p14@MEIS2!0.12!0.51!MEIS2;;chr15:42749346..42749359,-!p7@ZFP106!0.12!0.51!ZFP106;;chr17:53342311..53342400,+!p1@HLF!0.12!0.51!HLF;;chr19:20011696..20011705,+!p4@ZNF93!0.12!0.51!ZNF93;;chr1:164528687..164528711,+!p6@PBX1!0.12!0.51!PBX1;;chr11:10876220..10876224,-!p3@ZBED5!0.12!0.51!ZBED5;;chr13:73636252..73636307,+!p2@KLF5!0.12!0.51!KLF5;;chrX:70503447..70503517,+!p1@NONO!0.11!93.09!NONO;;chr13:20357063..20357105,-!p1@PSPC1!0.11!37.44!PSPC1;;chr16:30798492..30798535,-!p1@ZNF629!0.11!17.70!ZNF629;;chr11:47236489..47236567,+!p2@DDB2!0.11!15.39!DDB2;;chr12:104531945..104531996,-!p1@NFYB!0.11!15.39!NFYB;;chrX:119384629..119384720,+!p1@ZBTB33!0.11!15.13!ZBTB33;;chr11:9482551..9482580,+!p1@ZNF143!0.11!14.36!ZNF143;;chr22:31742303..31742350,-!p1@PATZ1!0.11!12.05!PATZ1;;chr3:179040767..179040866,+!p1@ZNF639!0.11!11.28!ZNF639;;chr19:4065485..4065546,-!p2@ZBTB7A!0.11!9.75!ZBTB7A;;chr4:18023350..18023385,-!p1@LCORL!0.11!9.23!LCORL;;chr6:21597765..21597779,+!p2@SOX4!0.11!8.72!SOX4;;chr18:51750888..51750920,-!p3@MBD2!0.11!7.69!MBD2;;chr1:6685228..6685270,+!p1@THAP3!0.11!7.69!THAP3;;chr6:35227480..35227546,+!p1@ZNF76!0.11!6.92!ZNF76;;chr21:27107672..27107698,+!p2@GABPA!0.11!4.10!GABPA;;chr7:148892581..148892604,+!p3@ZNF282!0.11!2.82!ZNF282;;chr19:52674853..52674892,-!p2@ZNF836!0.11!2.31!ZNF836;;chr11:12696002..12696022,+!p2@TEAD1!0.11!2.05!TEAD1;;chr9:32550839..32550962,-!p3@TOPORS!0.11!2.05!TOPORS;;chr19:56152332..56152347,+!p4@ZNF580!0.11!1.80!ZNF580;;chr21:44394742..44394756,+!p2@PKNOX1!0.11!1.80!PKNOX1;;chr10:51572339..51572376,+!p4@NCOA4!0.11!1.80!NCOA4;;chr19:19303047..19303079,+!p3@RFXANK!0.11!1.80!RFXANK;;chr15:96873861..96873872,+!p9@NR2F2!0.11!1.54!NR2F2;;chr15:96869255..96869291,+!p6@NR2F2!0.11!1.28!NR2F2;;chr15:96874063..96874074,+!p10@NR2F2!0.11!1.28!NR2F2;;chr18:3448455..3448480,+!p5@TGIF1!0.11!1.28!TGIF1;;chr19:55987998..55988026,+!p2@ZNF628!0.11!1.28!ZNF628;;chr21:36260343..36260402,-!p6@RUNX1!0.11!1.03!RUNX1;;chr18:74072572..74072588,-!p2@ZNF516!0.11!1.03!ZNF516;;chr19:37997297..37997362,+!p3@ZNF793!0.11!1.03!ZNF793;;chrX:119384566..119384585,+!p2@ZBTB33!0.11!1.03!ZBTB33;;chr10:21823381..21823399,+!p4@MLLT10!0.11!1.03!MLLT10;;chr12:56575310..56575344,-!p3@SMARCC2!0.11!1.03!SMARCC2;;chr2:208030299..208030332,-!p6@KLF7!0.11!1.03!KLF7;;chr2:214016496..214016544,-!p5@IKZF2!0.11!0.77!IKZF2;;chr3:126076264..126076305,-!p2@KLF15!0.11!0.77!KLF15;;chr4:87967965..87967983,+!p16@AFF1!0.11!0.77!AFF1;;chr19:12444491..12444517,-!p4@ZNF563!0.11!0.77!ZNF563;;chr7:28448995..28449011,+!p4@CREB5!0.11!0.77!CREB5;;chr7:74072175..74072188,+!p6@GTF2I!0.11!0.77!GTF2I;;chr19:56152503..56152514,+!p7@ZNF580!0.11!0.77!ZNF580;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000147;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002586;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001781;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007625
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:11215-116A9: Difference between revisions

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Revision as of 14:53, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0