FFCP PHASE1:Hg19::chr12:48152480..48152492,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10411 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |||
|TSSclassifier=strong | |||
|UniProt=O95398 | |||
|association_with_transcript=-52bp_to_ENST00000395358,ENST00000449771_5end | |||
|description=CAGE_peak_8_at_RAPGEF3_5end | |||
|id=chr12:48152480..48152492,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000239;1.93e-20;3!CL:1000615;1.93e-20;3!CL:0002306;1.93e-20;3!CL:1000497;1.63e-09;17!CL:0002518;1.63e-09;17!CL:0002681;6.56e-09;12!CL:0002584;6.56e-09;12!CL:0000319;1.11e-07;1!CL:1000449;3.81e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.78e-20,3;CL:1000615,2.78e-20,3;CL:0002306,2.78e-20,3;CL:1000497,2.05e-09,17;CL:0002518,2.05e-09,17;CL:0002681,8.70e-09,12;CL:0002584,8.70e-09,12;CL:0000319,7.45e-08,1;CL:1000449,4.76e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0007297;1.11e-13;2!UBERON:0007123;1.24e-12;5!UBERON:0003918;1.61e-10;10!UBERON:0007687;1.61e-10;10!UBERON:0008801;5.15e-08;1!UBERON:0005754;1.11e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;1.11e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,7.45e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.24e-55!115;UBERON:0001049!1.21e-23!57;UBERON:0005068!1.21e-23!57;UBERON:0006241!1.21e-23!57;UBERON:0007135!1.21e-23!57;UBERON:0003075!2.71e-23!86;UBERON:0007284!2.71e-23!86;UBERON:0002346!1.25e-22!90;UBERON:0002616!1.93e-22!59;UBERON:0003080!3.05e-21!42;UBERON:0002780!4.73e-20!41;UBERON:0001890!4.73e-20!41;UBERON:0006240!4.73e-20!41;UBERON:0000955!1.98e-19!69;UBERON:0006238!1.98e-19!69;UBERON:0003056!1.83e-18!61;UBERON:0001893!3.05e-18!34;UBERON:0002020!3.39e-18!34;UBERON:0003528!3.39e-18!34;UBERON:0001017!2.22e-17!82;UBERON:0002791!2.57e-17!33;UBERON:0005743!5.44e-17!86;UBERON:0001869!2.97e-16!32;UBERON:0000073!3.32e-14!94;UBERON:0001016!3.32e-14!94;UBERON:0000153!3.82e-13!129;UBERON:0007811!3.82e-13!129;UBERON:0000025!5.61e-13!194;UBERON:0000483!1.95e-12!309;UBERON:0004111!2.34e-12!241;UBERON:0000477!2.36e-12!286;UBERON:0002619!3.88e-12!22;UBERON:0000119!4.32e-12!312;UBERON:0000033!5.71e-12!123;UBERON:0001950!6.95e-12!20;UBERON:0004121!7.60e-11!169;UBERON:0002420!7.84e-11!9;UBERON:0007245!7.84e-11!9;UBERON:0010009!7.84e-11!9;UBERON:0010011!7.84e-11!9;UBERON:0000454!7.84e-11!9;UBERON:0000924!8.93e-11!173;UBERON:0006601!8.93e-11!173;UBERON:0002308!1.02e-10!9;UBERON:0000125!1.02e-10!9;UBERON:0000956!3.43e-10!25;UBERON:0000203!3.43e-10!25;UBERON:0000064!1.58e-08!219;UBERON:0009663!1.88e-08!7;UBERON:0002298!4.56e-08!8;UBERON:0000062!1.21e-07!511;UBERON:0000475!4.86e-07!365;UBERON:0000481!5.91e-07!347;UBERON:0003887!6.03e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;1.93e-20;3!UBERON:0007685;1.93e-20;3!UBERON:0004134;1.93e-20;3!UBERON:0006947;1.24e-19;3!UBERON:0004054;1.24e-19;3!UBERON:0005904;7.09e-15;4!UBERON:0000341;4.17e-14;2!UBERON:0002046;1.24e-12;5!UBERON:0002113;1.83e-12;24!UBERON:0011143;1.83e-12;24!UBERON:0004175;1.08e-10;21!UBERON:0000489;3.61e-10;29!UBERON:0006554;8.41e-10;30!UBERON:0001008;8.41e-10;30!UBERON:0001225;6.56e-09;12!UBERON:0008987;6.56e-09;12!UBERON:0001831;5.15e-08;1!UBERON:0001567;5.15e-08;1!UBERON:0002336;1.11e-07;1!UBERON:0001000;1.11e-07;1!UBERON:0000998;1.11e-07;1!UBERON:0001301;1.11e-07;1!UBERON:0006868;1.11e-07;1!UBERON:0011215;1.11e-07;1!UBERON:0001018;1.11e-07;1!UBERON:0002473;1.11e-07;1!UBERON:0005340;1.11e-07;1!UBERON:0003544;1.11e-07;1!UBERON:0005970;1.11e-07;1!UBERON:0002316;1.11e-07;1!UBERON:0001020;1.11e-07;1!UBERON:0005352;1.11e-07;1!UBERON:0002437;1.11e-07;1!UBERON:0001851;3.81e-07;15!UBERON:0006555;3.81e-07;15!UBERON:0000353;3.81e-07;15!UBERON:0004819;3.81e-07;15!UBERON:0001285;3.81e-07;15!UBERON:0007684;3.81e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.78e-20,3;UBERON:0007685,2.78e-20,3;UBERON:0004134,2.78e-20,3;UBERON:0006947,1.02e-19,3;UBERON:0004054,1.02e-19,3;UBERON:0002113,1.59e-18,26;UBERON:0003918,1.59e-18,26;UBERON:0011143,1.59e-18,26;UBERON:0005095,1.59e-18,26;UBERON:0007687,1.59e-18,26;UBERON:0000489,2.60e-15,31;UBERON:0005904,6.16e-15,4;UBERON:0000341,3.21e-14,2;UBERON:0002046,9.07e-13,5;UBERON:0004117,9.07e-13,5;UBERON:0007689,9.07e-13,5;UBERON:0007123,9.07e-13,5;UBERON:0003091,9.07e-13,5;UBERON:0006555,7.25e-10,16;UBERON:0004819,7.25e-10,16;UBERON:0006554,1.28e-09,47;UBERON:0001008,2.18e-09,48;UBERON:0004175,7.44e-09,25;UBERON:0001225,8.70e-09,12;UBERON:0008987,8.70e-09,12;UBERON:0005172,3.44e-08,54;UBERON:0005173,3.44e-08,54;UBERON:0001831,4.99e-08,1;UBERON:0001567,4.99e-08,1;UBERON:0008801,4.99e-08,1;UBERON:0000998,9.10e-08,1;UBERON:0006868,9.10e-08,1;UBERON:0001000,9.72e-08,1;UBERON:0005352,9.72e-08,1;UBERON:0001301,1.26e-07,1;UBERON:0002336,1.35e-07,1;UBERON:0011215,1.35e-07,1;UBERON:0001018,1.35e-07,1;UBERON:0002473,1.35e-07,1;UBERON:0005340,1.35e-07,1;UBERON:0003544,1.35e-07,1;UBERON:0005970,1.35e-07,1;UBERON:0002316,1.35e-07,1;UBERON:0001020,1.35e-07,1;UBERON:0002437,1.35e-07,1;UBERON:0002417,3.12e-07,60;UBERON:0000916,3.12e-07,60;UBERON:0001851,4.76e-07,15;UBERON:0004211,4.76e-07,15;UBERON:0009773,4.76e-07,15;UBERON:0000353,4.76e-07,15;UBERON:0001231,4.76e-07,15;UBERON:0001285,4.76e-07,15;UBERON:0007684,4.76e-07,15;UBERON:0004208,4.76e-07,15;UBERON:0000080,8.05e-07,9;UBERON:0002120,8.05e-07,9;UBERON:0004875,8.05e-07,9;UBERON:0005721,8.05e-07,9;UBERON:0005754,8.05e-07,9;UBERON:0007297,8.05e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0.795285947051099,0,0,0.221729397462564,0,0.916853528483988,0.364295288292542,0,0,0,0,0,0,0,0,0,0,1.69592382577203,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0.949265659568129,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92972281457866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.100528972411631,0,0,0,1.44331342025273,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0.184161977871793,0,0,0,0.451199612907412,0.0770153371044148,0.784349769176855,0,0.105551628892876,1.13733384070897,0,0,0,0,0,1.27438136522519,4.15538004464362,2.0148727924996,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0.670302275535787,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90460633053462,0,0,0,0,0,0,0.994147647766298,0.562677665642051,0.222617410045812,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.74214478529481,0,0,0.0874599999961957,2.17499872630438,0,0,0.236387681767936,0,0,0,0.885741385813839,0.241192877250816,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,1.00035336054936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,2.28525931422807,0,0,0,0.176915129006678,0,0,0,0,1.28062152663286,0,0.702793337176017,0,0,0,1.57833761139756,0,0,0.252746318513952,0,0,0,0,0,0,10.8151627491321,0,0.347119476670262,0.0979923974143777,0.261177619741208,1.39781334593624,0,0,0.0730893170861856,0,0.484945082442097,0,0.225980740780532,0,0,0.379864775735272,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.410716136675979,0,0,0,0.558564802544508,0.687481272035051,0.717873024576814,0.399358000997982,0,0.223171457441873,0.134366944973453,0,0,0,0,0,0,0.0846733320657845,0,0.681017030557878,0.160753148465019,0,0,0,0,0.789744236554321,0,1.49730843868477,1.20645552710496,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0.775697738169303,0.52893040697076,0,0,0.533937062838473,0.157204305099666,0.414239055347196,0,0,0,0,0,1.2534494701135,1.22538230705385,0.327872630709804,0,0,0.732157589411779,0.3755727921195,0,0.332787154610557,0.558867626472451,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0.176689145945881,0,0,3.58738126023125,0,0,0.138258436151731,0,0,0,0,1.72041036127604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.385375350578757,1.41696576325585,0.638535436228605,0.82046545696302,0,0.829887029570615,0.968853873791107,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.405225507710368,0,0.413373593002368,0.824405532520789,0,2.19303106742873,0.992422356778588,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0.747667062745149,0.394636641377094,0,0,0.235479278551542,0.157115589916002,0,0,3.88669664193519,0,0.285906176706625,0,0,0,0,0,0,0,0.430227358820278,0,0,1.69354820076372,7.3314197934096,0,0,0.111855431797792,0,0,0,0.307988420568741,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0,0.951880862672806,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0.267964130156178,0.829169439458779,0.930896962757057,1.70587185520785,3.57096647195611,0,0.124149428591716,1.90624166387043,6.04648003642567,5.86139847978836,0,0,0,0.717222053926764,0.332660356546013,0,0.106727345877715,0,0,0,0.488965776731466,0.406896178315738,0.665756774185513,0.201273793591026,0 | |||
|short_description=p8@RAPGEF3 | |||
}} |
Revision as of 13:11, 11 January 2014
Short description: | p8@RAPGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RAPGEF3_5end |
Coexpression cluster: | NA |
Association with transcript: | -52bp_to_ENST00000395358, ENST00000449771_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | O95398 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.78e-20 | 3 |
kidney cortex tubule cell | 2.78e-20 | 3 |
epithelial cell of proximal tubule | 2.78e-20 | 3 |
kidney cell | 2.05e-09 | 17 |
kidney epithelial cell | 2.05e-09 | 17 |
kidney cortical cell | 8.70e-09 | 12 |
renal cortical epithelial cell | 8.70e-09 | 12 |
mucus secreting cell | 7.45e-08 | 1 |
epithelial cell of nephron | 4.76e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 7.45e-08 | 1 |