FFCP PHASE1:Hg19::chr11:65778994..65779015,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1474 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2478 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=39bp_to_uc001ogq.1_5end | |||
|coexpression_cluster_id=C1349 | |||
|description=CAGE_peak_3_at_CST6_5end | |||
|id=chr11:65778994..65779015,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.43e-25!254;CL:0002076!4.03e-17!43;CL:0002368!1.86e-13!13;CL:1000507!8.15e-13!12;CL:1000494!8.15e-13!12;CL:1000449!7.91e-12!16;CL:0000223!4.57e-11!59;CL:0000244!1.04e-10!4;CL:0000731!1.04e-10!4;CL:1000497!2.69e-10!18;CL:0002518!2.69e-10!18;CL:0002541!3.17e-09!3;CL:0000239!1.02e-08!3;CL:1000615!1.02e-08!3;CL:0002306!1.02e-08!3;CL:0000082!4.66e-07!19;CL:0002681!7.90e-07!13;CL:0002584!7.90e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002541;1.29e-21;3!CL:0000239;2.82e-20;3!CL:1000615;2.82e-20;3!CL:0002306;2.82e-20;3!CL:0000349;9.62e-17;19!CL:1000507;2.22e-16;10!CL:1000494;2.22e-16;10!CL:1000449;1.41e-15;15!CL:0000244;3.82e-15;4!CL:0000731;3.82e-15;4!CL:0002681;7.62e-14;12!CL:0002584;7.62e-14;12!CL:1000497;1.09e-13;17!CL:0002518;1.09e-13;17!CL:0002537;8.33e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.38e-21,3;CL:0000239,2.92e-20,3;CL:1000615,2.92e-20,3;CL:0002306,2.92e-20,3;CL:0000349,1.01e-16,19;CL:1000507,1.94e-16,10;CL:1000494,1.94e-16,10;CL:1000449,1.27e-15,15;CL:0000244,3.55e-15,4;CL:0000731,3.55e-15,4;CL:0002681,7.52e-14,12;CL:0002584,7.52e-14,12;CL:1000497,1.00e-13,17;CL:0002518,1.00e-13,17;CL:0002537,8.67e-13,5;CL:0000066,1.52e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0008814;5.46e-14;2!UBERON:0010056;5.46e-14;2 | |||
|ontology_enrichment_disease=DOID:1749!6.96e-08!14;DOID:305!7.69e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:4468;1.16e-14;2!DOID:1749;8.17e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,1.28e-14,2;DOID:1749,7.88e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.97e-20!14;UBERON:0000158!1.97e-20!14;UBERON:0004119!1.21e-14!169;UBERON:0000925!1.21e-14!169;UBERON:0006595!1.21e-14!169;UBERON:0005911!2.40e-14!82;UBERON:0006554!4.09e-14!44;UBERON:0001008!1.08e-13!45;UBERON:0003124!3.40e-13!7;UBERON:0000365!7.50e-13!5;UBERON:0009773!8.15e-13!12;UBERON:0001231!8.15e-13!12;UBERON:0004810!8.15e-13!12;UBERON:0000058!4.96e-12!26;UBERON:0004211!7.91e-12!16;UBERON:0001285!7.91e-12!16;UBERON:0007684!7.91e-12!16;UBERON:0003220!7.91e-12!16;UBERON:0004208!7.91e-12!16;UBERON:0003064!1.01e-11!37;UBERON:0000065!2.29e-11!53;UBERON:0006555!5.13e-11!17;UBERON:0005103!5.13e-11!17;UBERON:0000083!5.13e-11!17;UBERON:0009201!5.13e-11!17;UBERON:0004819!5.13e-11!17;UBERON:0006553!5.13e-11!17;UBERON:0003074!5.13e-11!17;UBERON:0003060!5.13e-11!17;UBERON:0000064!5.89e-11!219;UBERON:0000478!8.40e-11!24;UBERON:0005910!1.24e-10!6;UBERON:0005178!2.30e-10!34;UBERON:0002224!2.30e-10!34;UBERON:0000080!2.69e-10!18;UBERON:0002120!2.69e-10!18;UBERON:0004875!2.69e-10!18;UBERON:0005721!2.69e-10!18;UBERON:0005754!2.69e-10!18;UBERON:0007297!2.69e-10!18;UBERON:0001004!3.42e-10!72;UBERON:0005181!5.65e-10!35;UBERON:0000464!7.50e-10!104;UBERON:0004923!1.53e-09!57;UBERON:0005153!1.62e-09!37;UBERON:0005177!1.86e-09!107;UBERON:0000476!3.17e-09!3;UBERON:0000920!3.17e-09!3;UBERON:0002048!3.38e-09!22;UBERON:0000117!3.38e-09!22;UBERON:0000171!3.38e-09!22;UBERON:0000170!3.38e-09!22;UBERON:0005597!3.38e-09!22;UBERON:0000118!3.38e-09!22;UBERON:0000305!4.21e-09!7;UBERON:0004876!4.49e-09!20;UBERON:0006853!1.02e-08!3;UBERON:0007685!1.02e-08!3;UBERON:0004134!1.02e-08!3;UBERON:0000466!1.13e-08!126;UBERON:0003887!1.50e-08!21;UBERON:0005157!3.56e-08!51;UBERON:0004871!6.61e-08!8;UBERON:0000077!6.75e-08!130;UBERON:0009569!8.97e-08!113;UBERON:0001007!3.12e-07!155;UBERON:0001555!3.12e-07!155;UBERON:0007026!3.12e-07!155;UBERON:0001851!4.03e-07!16;UBERON:0004802!4.66e-07!19;UBERON:0000115!4.66e-07!19;UBERON:0001225!7.90e-07!13;UBERON:0008987!7.90e-07!13;UBERON:0004807!8.35e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.71e-24;10!UBERON:0000158;2.71e-24;10!UBERON:0003124;1.29e-21;3!UBERON:0000920;1.29e-21;3!UBERON:0006853;2.82e-20;3!UBERON:0007685;2.82e-20;3!UBERON:0004134;2.82e-20;3!UBERON:0006554;2.07e-16;30!UBERON:0001008;2.07e-16;30!UBERON:0004211;2.22e-16;10!UBERON:0009773;2.22e-16;10!UBERON:0001231;2.22e-16;10!UBERON:0004810;2.22e-16;10!UBERON:0006555;1.41e-15;15!UBERON:0004819;1.41e-15;15!UBERON:0001285;1.41e-15;15!UBERON:0007684;1.41e-15;15!UBERON:0001225;7.62e-14;12!UBERON:0008987;7.62e-14;12!UBERON:0000478;4.41e-13;24!UBERON:0000365;3.14e-12;5!UBERON:0001851;4.88e-11;15!UBERON:0000353;4.88e-11;15!UBERON:0005910;2.80e-10;6!UBERON:0001723;1.25e-09;3!UBERON:0001033;1.25e-09;3!UBERON:0002113;1.52e-09;24!UBERON:0011143;1.52e-09;24!UBERON:0000305;2.74e-09;7!UBERON:0004913;2.52e-08;1!UBERON:0003703;2.52e-08;1!UBERON:0001174;2.52e-08;1!UBERON:0004914;2.52e-08;1!UBERON:0002394;6.21e-08;4!UBERON:0003928;6.21e-08;4!UBERON:0000489;8.33e-08;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.56e-23,14;UBERON:0000158,5.56e-23,14;UBERON:0000920,1.38e-21,3;UBERON:0006853,2.92e-20,3;UBERON:0007685,2.92e-20,3;UBERON:0004134,2.92e-20,3;UBERON:0004810,1.94e-16,10;UBERON:0003124,7.53e-16,7;UBERON:0004211,1.27e-15,15;UBERON:0009773,1.27e-15,15;UBERON:0001231,1.27e-15,15;UBERON:0001285,1.27e-15,15;UBERON:0007684,1.27e-15,15;UBERON:0004208,1.27e-15,15;UBERON:0006554,5.32e-15,47;UBERON:0001008,1.20e-14,48;UBERON:0006555,1.29e-14,16;UBERON:0004819,1.29e-14,16;UBERON:0001225,7.52e-14,12;UBERON:0008987,7.52e-14,12;UBERON:0000478,4.58e-13,24;UBERON:0000365,2.97e-12,5;UBERON:0001851,4.82e-11,15;UBERON:0000353,4.82e-11,15;UBERON:0005910,2.67e-10,6;UBERON:0001723,1.34e-09,3;UBERON:0001033,1.34e-09,3;UBERON:0010056,1.34e-09,3;UBERON:0000305,2.82e-09,7;UBERON:0002113,8.57e-09,26;UBERON:0003918,8.57e-09,26;UBERON:0011143,8.57e-09,26;UBERON:0005095,8.57e-09,26;UBERON:0007687,8.57e-09,26;UBERON:0004913,2.52e-08,1;UBERON:0003703,2.52e-08,1;UBERON:0001174,2.52e-08,1;UBERON:0004914,2.52e-08,1;UBERON:0004871,3.57e-08,8;UBERON:0000489,2.75e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,11.0580271425679,13.2582221914761,0.436882744260345,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01578553838631,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6065841139427,0.0920809889358963,0,0,0,3.60959690325929,0.539107359730903,0.784349769176855,2.92278449306521,0.73886140225013,0,0,0,0,0,0,1.78413391131527,5.81753206250107,1.11937377361089,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661139661443912,1.15314040419064,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.564862804660675,2.15252686335615,1.68471475667626,0.443430153536676,1.83778720165568,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.58116727106535,4.45447021248958,3.37876772309155,0,0,0,0,0,0,0,0,0,0,0,8.80709841243803,0,0,0,0,0,0,0,0,0,0,0,0,0.508507300585533,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,7.65602783356607,5.22106282390615,11.72676507241,0,0,0,0,0,0,0,0,10.9718993554574,2.28525931422807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0,2.78589461057288,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0.195551382734803,0.561111741760736,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.49489756515279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0.828478110694391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0,0,0,0,0.358177682162975,0.308801447160972,0.219284049578707,0,0.38582807654183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183428598521679,2.31051332300676,0,0,0,0,0,0,0,0,6.2099556211159,0,0,0,0,0,0,0,0,0.511049710558381,0,0,0,0,0.266107110487916,0,0,0,0,0.945550727071746,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9567785821453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29342307573538,0.401206833445841,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.639701945702943,0,0,0,0.112131862580613,0,0,1.30630048738177,0,0.202056159043763,0.0717222053926763,0,0.569822880276821,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p3@CST6 | |||
}} |
Revision as of 08:46, 11 January 2014
Short description: | p3@CST6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CST6_5end |
Coexpression cluster: | C1349_Alveolar_bile_chorionic_clear_amniotic_papillotubular_serous |
Association with transcript: | 39bp_to_uc001ogq.1_5end |
EntrezGene: | CST6 |
HGNC: | 2478 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.38e-21 | 3 |
brush border epithelial cell | 2.92e-20 | 3 |
kidney cortex tubule cell | 2.92e-20 | 3 |
epithelial cell of proximal tubule | 2.92e-20 | 3 |
extraembryonic cell | 1.01e-16 | 19 |
kidney tubule cell | 1.94e-16 | 10 |
nephron tubule epithelial cell | 1.94e-16 | 10 |
epithelial cell of nephron | 1.27e-15 | 15 |
transitional epithelial cell | 3.55e-15 | 4 |
urothelial cell | 3.55e-15 | 4 |
kidney cortical cell | 7.52e-14 | 12 |
renal cortical epithelial cell | 7.52e-14 | 12 |
kidney cell | 1.00e-13 | 17 |
kidney epithelial cell | 1.00e-13 | 17 |
amnion mesenchymal stem cell | 8.67e-13 | 5 |
epithelial cell | 1.52e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 1.28e-14 | 2 |
squamous cell carcinoma | 7.88e-08 | 14 |