FFCP PHASE1:Hg19::chr1:2485709..2485728,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:2485709..2485728,+ | |||
|id=chr1:2485709..2485728,+ | |||
|ontology_enrichment_celltype=CL:0000115!5.86e-44!35;CL:0002139!9.70e-38!24;CL:0002078!7.61e-34!44;CL:0000071!1.61e-28!18;CL:0002546!1.61e-28!18;CL:0000213!6.91e-25!57;CL:0000215!6.91e-25!57;CL:0002274!3.64e-20!5;CL:0000457!3.64e-20!5;CL:0002191!3.64e-20!5;CL:0000097!3.64e-20!5;CL:0000831!3.64e-20!5;CL:0002028!3.64e-20!5;CL:0002543!1.39e-16!6;CL:1000413!9.74e-15!9;CL:0002618!1.19e-12!3;CL:0000163!4.73e-11!9;CL:0005020!1.01e-10!6;CL:0002138!1.01e-10!6;CL:0005022!1.01e-10!6;CL:0002544!1.43e-10!6;CL:0000222!2.64e-10!119;CL:0000666!1.37e-09!4;CL:0002188!1.37e-09!4;CL:1000612!1.95e-09!7;CL:1000746!1.95e-09!7 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.78e-42;36!CL:0002543;1.61e-38;6!CL:0002139;1.49e-37;24!CL:0000097;5.49e-31;5!CL:0002618;1.88e-28;3!CL:0000071;1.04e-24;18!CL:0002078;6.30e-23;45!CL:0000213;6.01e-19;58!CL:0000215;6.01e-19;58!CL:0002188;3.32e-18;5!CL:0000163;2.34e-17;9!CL:0002138;6.56e-15;6!CL:1000746;3.58e-13;7!CL:1000612;3.58e-13;7!CL:0002681;6.79e-08;12!CL:0002584;6.79e-08;12!CL:0002544;3.01e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.88e-49,36;CL:0002078,3.78e-39,45;CL:0002543,8.23e-39,6;CL:0002139,1.11e-37,24;CL:0000097,8.40e-31,5;CL:0002028,8.40e-31,5;CL:0000213,6.70e-30,58;CL:0000215,6.70e-30,58;CL:0002618,1.35e-28,3;CL:0000071,9.05e-25,18;CL:0002546,9.05e-25,18;CL:0002188,3.32e-18,5;CL:0000163,2.95e-17,9;CL:0005020,5.56e-15,6;CL:0002138,5.56e-15,6;CL:0005022,5.56e-15,6;CL:0000222,3.51e-13,121;CL:1000746,3.58e-13,7;CL:1000612,3.58e-13,7;CL:0002681,6.79e-08,12;CL:0002584,6.79e-08,12;CL:0002544,3.46e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.04e-24;18!CL:0005022;6.56e-15;6!CL:0000222;3.96e-07;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.61e-28!18;UBERON:0004638!1.61e-28!18;UBERON:0004852!1.61e-28!18;UBERON:0000487!7.75e-23!22;UBERON:0006914!9.05e-20!25;UBERON:0003915!9.74e-15!9;UBERON:0004700!9.74e-15!9;UBERON:0001917!9.74e-15!9;UBERON:0000055!8.13e-14!69;UBERON:0002049!1.60e-11!79;UBERON:0007798!1.60e-11!79;UBERON:0003081!2.23e-11!216;UBERON:0001638!6.08e-11!9;UBERON:0003920!6.08e-11!9;UBERON:0004582!6.08e-11!9;UBERON:0004872!2.20e-10!84;UBERON:0001981!1.90e-09!60;UBERON:0007500!1.90e-09!60;UBERON:0004537!1.90e-09!60;UBERON:0006965!1.90e-09!60;UBERON:0000074!1.95e-09!7;UBERON:0001229!1.95e-09!7;UBERON:0001230!1.95e-09!7;UBERON:0005749!1.95e-09!7;UBERON:0004199!1.95e-09!7;UBERON:0004209!1.95e-09!7;UBERON:0004198!1.95e-09!7;UBERON:0003914!2.37e-09!118;UBERON:0003887!2.86e-08!21;UBERON:0004535!4.52e-08!110;UBERON:0001473!4.81e-08!8;UBERON:0004536!4.81e-08!8;UBERON:0006558!4.81e-08!8;UBERON:0004111!9.10e-08!241;UBERON:0002066!9.53e-08!5;UBERON:0001009!9.58e-08!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0001638;1.05e-25;9!UBERON:0003920;1.05e-25;9!UBERON:0004582;1.05e-25;9!UBERON:0004638;1.04e-24;18!UBERON:0001986;1.04e-24;18!UBERON:0004852;1.04e-24;18!UBERON:0000487;4.17e-20;22!UBERON:0006914;1.28e-17;25!UBERON:0002066;2.39e-17;5!UBERON:0000074;3.58e-13;7!UBERON:0001229;3.58e-13;7!UBERON:0001473;2.52e-11;8!UBERON:0004536;2.52e-11;8!UBERON:0006558;2.52e-11;8!UBERON:0000353;1.05e-10;15!UBERON:0000490;1.23e-10;33!UBERON:0010260;6.77e-10;9!UBERON:0000055;1.54e-09;65!UBERON:0002465;3.65e-09;10!UBERON:0001225;6.79e-08;12!UBERON:0008987;6.79e-08;12!UBERON:0002049;7.53e-07;75!UBERON:0007798;7.53e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001638,6.75e-26,9;UBERON:0003920,6.75e-26,9;UBERON:0004582,6.75e-26,9;UBERON:0004638,9.05e-25,18;UBERON:0001986,9.05e-25,18;UBERON:0004852,9.05e-25,18;UBERON:0000487,3.71e-20,22;UBERON:0006914,1.16e-17,25;UBERON:0002066,1.96e-17,5;UBERON:0000055,3.72e-15,68;UBERON:0010532,3.58e-13,7;UBERON:0000074,3.58e-13,7;UBERON:0001229,3.58e-13,7;UBERON:0001230,3.58e-13,7;UBERON:0003220,3.58e-13,7;UBERON:0005749,3.58e-13,7;UBERON:0004199,3.58e-13,7;UBERON:0004209,3.58e-13,7;UBERON:0004198,3.58e-13,7;UBERON:0002049,5.33e-13,78;UBERON:0007798,5.33e-13,78;UBERON:0005103,1.36e-11,8;UBERON:0000083,1.36e-11,8;UBERON:0009201,1.36e-11,8;UBERON:0006553,1.36e-11,8;UBERON:0003074,1.36e-11,8;UBERON:0003060,1.36e-11,8;UBERON:0001473,2.23e-11,8;UBERON:0004536,2.23e-11,8;UBERON:0006558,2.23e-11,8;UBERON:0000353,1.06e-10,15;UBERON:0000080,2.30e-10,9;UBERON:0002120,2.30e-10,9;UBERON:0004875,2.30e-10,9;UBERON:0005721,2.30e-10,9;UBERON:0005754,2.30e-10,9;UBERON:0007297,2.30e-10,9;UBERON:0010260,6.08e-10,9;UBERON:0003914,7.68e-10,117;UBERON:0003081,2.22e-09,203;UBERON:0007500,2.87e-09,59;UBERON:0001981,2.87e-09,59;UBERON:0004537,2.87e-09,59;UBERON:0006965,2.87e-09,59;UBERON:0002465,3.31e-09,10;UBERON:0004535,8.01e-09,109;UBERON:0004876,1.44e-08,11;UBERON:0001009,1.53e-08,112;UBERON:0000058,1.76e-08,19;UBERON:0001225,6.79e-08,12;UBERON:0008987,6.79e-08,12;UBERON:0003887,6.79e-08,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.596287222100115,0,2.08284300964557,0.56530794192401,0.419499436209906,0,0.417989933073621,2.32575083252396,2.13459757612026,1.67360306382335,0,0.760272105718513,0,1.10298924103761,0,1.25019619597712,1.34717623575702,1.35133776579987,0,1.89853131913626,1.28241220751285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.85786545549578,0,0,0,0,0,2.95394953340702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,6.25143881493905,2.07328115540772,2.45003920808834,1.00993946741104,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,1.2162378064119,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27466768141793,3.57196781080683,0.431831832204279,3.08454505380579,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08182271390393,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.751871343838829,0.773494655682926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:2485709..2485728,+ | |||
}} |
Revision as of 15:55, 10 January 2014
Short description: | p@chr1:2485709..2485728, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:2485709..2485728, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.88e-49 | 36 |
meso-epithelial cell | 3.78e-39 | 45 |
vein endothelial cell | 8.23e-39 | 6 |
endothelial cell of vascular tree | 1.11e-37 | 24 |
mast cell | 8.40e-31 | 5 |
basophil mast progenitor cell | 8.40e-31 | 5 |
lining cell | 6.70e-30 | 58 |
barrier cell | 6.70e-30 | 58 |
endothelial cell of umbilical vein | 1.35e-28 | 3 |
blood vessel endothelial cell | 9.05e-25 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.05e-25 | 18 |
glomerular endothelial cell | 3.32e-18 | 5 |
endocrine cell | 2.95e-17 | 9 |
lymphangioblast | 5.56e-15 | 6 |
endothelial cell of lymphatic vessel | 5.56e-15 | 6 |
vascular lymphangioblast | 5.56e-15 | 6 |
mesodermal cell | 3.51e-13 | 121 |
glomerular cell | 3.58e-13 | 7 |
kidney corpuscule cell | 3.58e-13 | 7 |
kidney cortical cell | 6.79e-08 | 12 |
renal cortical epithelial cell | 6.79e-08 | 12 |
aortic endothelial cell | 3.46e-07 | 6 |