Browse NonredundantMotifs: Difference between revisions
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Revision as of 14:01, 2 May 2013
Information : <br>Analyst: Ivan Kulakovskiy <br>208 clusters of known motifs (with the phase1 procedure <br> to select representative cluster members based on motif-promoter corelations
| motif db | motif id | motif name | score | Logo |
|---|---|---|---|---|
| UNIPROBE | Lhx8_2247.2 | CELL08 | NonredundantMotifs:1 | |
| SWISSREGULON | ZEB1.p2 | ZEB1 | NonredundantMotifs:10 | |
| UNIPROBE | Sp4_secondary | SCI09 | NonredundantMotifs:100 | |
| UNIPROBE | Cphx_3484.1 | CELL08 | NonredundantMotifs:101 | |
| UNIPROBE | Tcfap2c_secondary | SCI09 | NonredundantMotifs:102 | |
| HOCOMOCO | TLX1_f1 | NonredundantMotifs:103 | ||
| SWISSREGULON | CDX1,2,4.p2 | CDX1,2,4 | NonredundantMotifs:104 | |
| SWISSREGULON | ZBTB6.p2 | ZBTB6 | NonredundantMotifs:105 | |
| UNIPROBE | E2F2_secondary | SCI09 | NonredundantMotifs:106 | |
| SWISSREGULON | SPZ1.p2 | SPZ1 | NonredundantMotifs:108 | |
| HOCOMOCO | SPZ1_f1 | NonredundantMotifs:109 | ||
| JASPAR | MA0065.2 | PPARG::RXRA | NonredundantMotifs:11 | |
| UNIPROBE | Gata6_secondary | SCI09 | NonredundantMotifs:110 | |
| HOMER | PBX1_MCF7-PBX1-ChIP-Seq(GSE28007) | NonredundantMotifs:111 | ||
| HOCOMOCO | SMAD1_si | NonredundantMotifs:112 | ||
| UNIPROBE | Rhox11_2205.1 | CELL08 | NonredundantMotifs:113 | |
| HOMER | ZBTB33_GM12878-ZBTB33-ChIP-Seq | NonredundantMotifs:114 | ||
| HOCOMOCO | MAZ_f1 | NonredundantMotifs:115 | ||
| SWISSREGULON | CDC5L.p2 | CDC5L | NonredundantMotifs:116 | |
| HOCOMOCO | ZBT7B_si | NonredundantMotifs:117 | ||
| SWISSREGULON | POU6F1.p2 | POU6F1 | NonredundantMotifs:118 | |
| HOCOMOCO | KLF15_f1 | NonredundantMotifs:119 | ||
| HOCOMOCO | MBD2_si | NonredundantMotifs:120 | ||
| UNIPROBE | Gcm1_primary | SCI09 | NonredundantMotifs:121 | |
| SWISSREGULON | EWSR1-FLI1.p2 | EWSR1-FLI1 | NonredundantMotifs:122 | |
| SWISSREGULON | MSX1,2.p2 | MSX1,2 | NonredundantMotifs:123 | |
| SWISSREGULON | ARID5B.p2 | ARID5B | NonredundantMotifs:124 | |
| UNIPROBE | Osr1_secondary | SCI09 | NonredundantMotifs:125 | |
| UNIPROBE | Osr1_primary | SCI09 | NonredundantMotifs:126 | |
| UNIPROBE | Sp100_primary | SCI09 | NonredundantMotifs:127 | |
| HOMER | ZNF263_K562-Znf263-ChIP-Seq | NonredundantMotifs:128 | ||
| SWISSREGULON | EN1,2.p2 | EN1,2 | NonredundantMotifs:129 | |
| HOMER | STAT1_HelaS3-STAT1-ChIP-Seq | NonredundantMotifs:13 | ||
| HOCOMOCO | SOX17_f2 | NonredundantMotifs:130 | ||
| UNIPROBE | Isgf3g_secondary | SCI09 | NonredundantMotifs:131 | |
| UNIPROBE | Sox7_secondary | SCI09 | NonredundantMotifs:132 | |
| UNIPROBE | Zbtb12_secondary | SCI09 | NonredundantMotifs:133 | |
| HOCOMOCO | FUBP1_f1 | NonredundantMotifs:134 | ||
| HOMER | DMC1_Testis-DMC1-ChIP-Seq | NonredundantMotifs:135 | ||
| SWISSREGULON | HMX1.p2 | HMX1 | NonredundantMotifs:136 | |
| HOCOMOCO | IRF5_f1 | NonredundantMotifs:137 | ||
| HOCOMOCO | EOMES_f1 | NonredundantMotifs:138 | ||
| UNIPROBE | IRC900814_secondary | SCI09 | NonredundantMotifs:139 | |
| HOMER | CDX2_mES-Cdx2-ChIP-Seq | NonredundantMotifs:14 | ||
| UNIPROBE | Zfp187_primary | SCI09 | NonredundantMotifs:140 | |
| HOCOMOCO | HXD10_f1 | NonredundantMotifs:141 | ||
| SWISSREGULON | POU3F1..4.p2 | POU3F1 | NonredundantMotifs:142 | |
| HOMER | EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709) | NonredundantMotifs:143 | ||
| UNIPROBE | Sox15_secondary | SCI09 | NonredundantMotifs:144 | |
| UNIPROBE | Arid5a_secondary | SCI09 | NonredundantMotifs:145 | |
| UNIPROBE | Gabpa_secondary | SCI09 | NonredundantMotifs:146 | |
| HOCOMOCO | ZN350_f1 | NonredundantMotifs:147 | ||
| UNIPROBE | Irf3_secondary | SCI09 | NonredundantMotifs:148 | |
| UNIPROBE | Zbtb3_secondary | SCI09 | NonredundantMotifs:149 | |
| HOCOMOCO | STAT2_f1 | NonredundantMotifs:15 | ||
| SWISSREGULON | HOX(A5,B5).p2 | HOX(A5,B5) | NonredundantMotifs:150 | |
| HOCOMOCO | MCR_f1 | NonredundantMotifs:151 | ||
| HOCOMOCO | ZBTB4!METH_f1 | NonredundantMotifs:152 | ||
| HOMER | TAL1_motifB | HPC7-Scl-ChIP-Seq | NonredundantMotifs:153 | |
| HOCOMOCO | MYBB_f1 | NonredundantMotifs:154 | ||
| HOCOMOCO | FOXC2_f1 | NonredundantMotifs:155 | ||
| HOCOMOCO | EPAS1_si | NonredundantMotifs:156 | ||
| UNIPROBE | Homez_1063.2 | CELL08 | NonredundantMotifs:157 | |
| UNIPROBE | Sox5_secondary | SCI09 | NonredundantMotifs:158 | |
| HOCOMOCO | PURA_f1 | NonredundantMotifs:159 | ||
| HOCOMOCO | CEBPB_f1 | NonredundantMotifs:16 | ||
| HOCOMOCO | TEF_f1 | NonredundantMotifs:160 | ||
| UNIPROBE | Tcf3_secondary | SCI09 | NonredundantMotifs:161 | |
| UNIPROBE | Zfp410_primary | SCI09 | NonredundantMotifs:162 | |
| HOCOMOCO | HXA7_f1 | NonredundantMotifs:163 | ||
| HOCOMOCO | ZBT7A_f1 | NonredundantMotifs:164 | ||
| HOCOMOCO | ATF5_si | NonredundantMotifs:165 | ||
| HOCOMOCO | TEAD4_f1 | NonredundantMotifs:166 | ||
| SWISSREGULON | FOXP3.p2 | FOXP3 | NonredundantMotifs:167 | |
| UNIPROBE | Zfp187_secondary | SCI09 | NonredundantMotifs:169 | |
| JASPAR | MA0035.2 | Gata1 | NonredundantMotifs:17 | |
| JASPAR | MA0164.1 | Nr2e3 | NonredundantMotifs:170 | |
| UNIPROBE | Zfp161_secondary | SCI09 | NonredundantMotifs:171 | |
| SWISSREGULON | GZF1.p2 | GZF1 | NonredundantMotifs:172 | |
| UNIPROBE | Zbtb3_primary | SCI09 | NonredundantMotifs:173 | |
| HOCOMOCO | PAX2_f1 | NonredundantMotifs:174 | ||
| SWISSREGULON | PAX8.p2 | PAX8 | NonredundantMotifs:175 | |
| UNIPROBE | Rxra_secondary | SCI09 | NonredundantMotifs:176 | |
| HOCOMOCO | NR2E3_f1 | NonredundantMotifs:177 | ||
| HOCOMOCO | PAX8_f1 | NonredundantMotifs:178 | ||
| HOMER | PRDM14_H1-PRDM14-ChIP-Seq | NonredundantMotifs:179 | ||
| SWISSREGULON | NHLH1,2.p2 | NHLH1,2 | NonredundantMotifs:18 | |
| SWISSREGULON | GTF2A1,2.p2 | GTF2A1,2 | NonredundantMotifs:180 | |
| HOCOMOCO | PAX5_si | NonredundantMotifs:181 | ||
| UNIPROBE | Arid3a_secondary | SCI09 | NonredundantMotifs:182 | |
| HOCOMOCO | PROP1_f1 | NonredundantMotifs:183 | ||
| HOCOMOCO | PTF1A_f1 | NonredundantMotifs:184 | ||
| HOCOMOCO | TGIF1_f1 | NonredundantMotifs:185 | ||
| HOCOMOCO | ALX1_si | NonredundantMotifs:186 | ||
| HOCOMOCO | ZEP2_si | NonredundantMotifs:187 | ||
| HOCOMOCO | HXD13_f1 | NonredundantMotifs:188 | ||
| HOCOMOCO | LEF1_f1 | NonredundantMotifs:19 | ||
| SWISSREGULON | AIRE.p2 | AIRE | NonredundantMotifs:190 | |
| HOCOMOCO | HLTF_f1 | NonredundantMotifs:191 | ||
| HOCOMOCO | HESX1_f1 | NonredundantMotifs:192 | ||
| HOCOMOCO | BHE41_f1 | NonredundantMotifs:193 | ||
| SWISSREGULON | NANOG(mouse).p2 | NANOG(mouse) | NonredundantMotifs:194 | |
| UNIPROBE | Zfp105_secondary | SCI09 | NonredundantMotifs:195 | |
| HOCOMOCO | MLXPL_f1 | NonredundantMotifs:196 | ||
| SWISSREGULON | ZBTB16.p2 | ZBTB16 | NonredundantMotifs:197 | |
| HOCOMOCO | BRAC_si | NonredundantMotifs:198 | ||
| UNIPROBE | Glis2_secondary | SCI09 | NonredundantMotifs:199 | |
| JASPAR | MA0080.2 | SPI1 | NonredundantMotifs:2 | |
| HOCOMOCO | CREB1_f1 | NonredundantMotifs:20 | ||
| HOCOMOCO | ZBTB4_si | NonredundantMotifs:200 | ||
| SWISSREGULON | ALX1.p2 | ALX1 | NonredundantMotifs:201 | |
| UNIPROBE | Sp100_secondary | SCI09 | NonredundantMotifs:202 | |
| HOCOMOCO | ARI3A_do | NonredundantMotifs:203 | ||
| UNIPROBE | Arid5a_primary | SCI09 | NonredundantMotifs:204 | |
| HOCOMOCO | HMGA2_f1 | NonredundantMotifs:205 | ||
| HOMER | PAX3_Rh4-PAX3 | FKHR-ChIP-Seq | NonredundantMotifs:206 | |
| UNIPROBE | Gcm1_secondary | SCI09 | NonredundantMotifs:207 | |
| UNIPROBE | Atf1_secondary | SCI09 | NonredundantMotifs:208 | |
| HOCOMOCO | E2F6_f1 | NonredundantMotifs:21 | ||
| UNIPROBE | Rara_secondary | SCI09 | NonredundantMotifs:22 | |
| JASPAR | MA0003.1 | TFAP2A | NonredundantMotifs:23 | |
| HOCOMOCO | ZEB1_do | NonredundantMotifs:24 | ||
| HOCOMOCO | TGIF1_si | NonredundantMotifs:25 | ||
| HOCOMOCO | NKX25_f1 | NonredundantMotifs:26 | ||
| HOMER | RELA_GM12787-p65-ChIP-Seq | NonredundantMotifs:27 | ||
| HOMER | MYBL2_Hela-BMYB-ChIPSeq(GSE27030) | NonredundantMotifs:28 | ||
| HOCOMOCO | GCR_do | NonredundantMotifs:29 | ||
| HOCOMOCO | HIF1A_si | NonredundantMotifs:3 | ||
| HOCOMOCO | ZN219_f1 | NonredundantMotifs:30 | ||
| HOCOMOCO | NFYB_f1 | NonredundantMotifs:31 | ||
| HOMER | POU5F1_mES-Oct4-ChIP-Seq | NonredundantMotifs:32 | ||
| HOCOMOCO | KLF4_f2 | NonredundantMotifs:33 | ||
| SWISSREGULON | NFATC1..3.p2 | NFATC1 | NonredundantMotifs:34 | |
| HOCOMOCO | ZIC1_f1 | NonredundantMotifs:35 | ||
| HOCOMOCO | RARA_f1 | NonredundantMotifs:36 | ||
| SWISSREGULON | NFE2L1.p2 | NFE2L1 | NonredundantMotifs:37 | |
| JASPAR | MA0112.2 | ESR1 | NonredundantMotifs:38 | |
| SWISSREGULON | RFX1..5_RFXANK_RFXAP.p2 | RFX1 | NonredundantMotifs:39 | |
| HOCOMOCO | FOXO1_si | NonredundantMotifs:4 | ||
| HOCOMOCO | SMAD3_f1 | NonredundantMotifs:40 | ||
| HOMER | RUNX1_Jurkat-RUNX1-ChIP-Seq | NonredundantMotifs:41 | ||
| UNIPROBE | Sry_primary | SCI09 | NonredundantMotifs:42 | |
| SWISSREGULON | ZNF143.p2 | ZNF143 | NonredundantMotifs:43 | |
| SWISSREGULON | TP53.p2 | TP53 | NonredundantMotifs:44 | |
| SWISSREGULON | MAFB.p2 | MAFB | NonredundantMotifs:45 | |
| SWISSREGULON | BPTF.p2 | BPTF | NonredundantMotifs:46 | |
| HOMER | NANOG_mES-Nanog-ChIP-Seq | NonredundantMotifs:47 | ||
| JASPAR | MA0108.2 | TBP | NonredundantMotifs:48 | |
| UNIPROBE | Six6_2267.5 | CELL08 | NonredundantMotifs:49 | |
| SWISSREGULON | SOX5.p2 | SOX5 | NonredundantMotifs:5 | |
| HOCOMOCO | MEF2D_f1 | NonredundantMotifs:50 | ||
| SWISSREGULON | GFI1.p2 | GFI1 | NonredundantMotifs:51 | |
| SWISSREGULON | PAX5.p2 | PAX5 | NonredundantMotifs:52 | |
| HOCOMOCO | SRF_do | NonredundantMotifs:53 | ||
| SWISSREGULON | POU5F1_SOX2(dimer).p2 | POU5F1_SOX2(dimer) | NonredundantMotifs:54 | |
| UNIPROBE | Zic1_primary | SCI09 | NonredundantMotifs:55 | |
| UNIPROBE | Irx4_2242.3 | CELL08 | NonredundantMotifs:56 | |
| SWISSREGULON | NKX2-2,8.p2 | NKX2-2,8 | NonredundantMotifs:57 | |
| SWISSREGULON | MZF1.p2 | MZF1 | NonredundantMotifs:58 | |
| SWISSREGULON | NKX3-1.p2 | NKX3-1 | NonredundantMotifs:59 | |
| HOCOMOCO | PPARA_f1 | NonredundantMotifs:6 | ||
| UNIPROBE | Bbx_primary | SCI09 | NonredundantMotifs:60 | |
| HOCOMOCO | CTCF_f2 | NonredundantMotifs:61 | ||
| HOCOMOCO | MTF1_f1 | NonredundantMotifs:62 | ||
| HOCOMOCO | HSF1_f2 | NonredundantMotifs:63 | ||
| HOCOMOCO | HNF1B_f1 | NonredundantMotifs:64 | ||
| HOCOMOCO | ATF6A_si | NonredundantMotifs:65 | ||
| UNIPROBE | Hmbox1_2674.1 | CELL08 | NonredundantMotifs:66 | |
| HOCOMOCO | NFIA+NFIB+NFIC+NFIX_f2 | NonredundantMotifs:67 | ||
| UNIPROBE | Srf_secondary | SCI09 | NonredundantMotifs:68 | |
| JASPAR | MA0090.1 | TEAD1 | NonredundantMotifs:69 | |
| HOCOMOCO | JUN_f1 | NonredundantMotifs:7 | ||
| HOCOMOCO | COE1_f2 | NonredundantMotifs:70 | ||
| UNIPROBE | Sox8_secondary | SCI09 | NonredundantMotifs:71 | |
| HOCOMOCO | KLF8_f1 | NonredundantMotifs:72 | ||
| JASPAR | MA0146.1 | Zfx | NonredundantMotifs:73 | |
| HOCOMOCO | SRBP1_f2 | NonredundantMotifs:74 | ||
| SWISSREGULON | RXRA_VDR(dimer).p2 | RXRA_VDR(dimer) | NonredundantMotifs:75 | |
| HOCOMOCO | TFCP2_f1 | NonredundantMotifs:76 | ||
| HOCOMOCO | REST_f1 | NonredundantMotifs:77 | ||
| UNIPROBE | Zfp161_primary | SCI09 | NonredundantMotifs:78 | |
| HOCOMOCO | ARNT2_si | NonredundantMotifs:79 | ||
| HOCOMOCO | OTX2_si | NonredundantMotifs:8 | ||
| UNIPROBE | Irf6_secondary | SCI09 | NonredundantMotifs:80 | |
| HOCOMOCO | NRF1_f1 | NonredundantMotifs:81 | ||
| UNIPROBE | Zic2_secondary | SCI09 | NonredundantMotifs:82 | |
| HOCOMOCO | RARA_f2 | NonredundantMotifs:83 | ||
| HOCOMOCO | RREB1_si | NonredundantMotifs:84 | ||
| SWISSREGULON | EVI1.p2 | EVI1 | NonredundantMotifs:85 | |
| UNIPROBE | Hic1_secondary | SCI09 | NonredundantMotifs:86 | |
| HOCOMOCO | NFIA+NFIB+NFIC+NFIX_si | NonredundantMotifs:87 | ||
| HOCOMOCO | BRCA1_f1 | NonredundantMotifs:88 | ||
| SWISSREGULON | YY1.p2 | YY1 | NonredundantMotifs:89 | |
| HOCOMOCO | HXB6_f1 | NonredundantMotifs:9 | ||
| UNIPROBE | Sox18_secondary | SCI09 | NonredundantMotifs:90 | |
| UNIPROBE | Rfx3_secondary | SCI09 | NonredundantMotifs:91 | |
| UNIPROBE | Ehf_secondary | SCI09 | NonredundantMotifs:92 | |
| SWISSREGULON | HMGA1,2.p2 | HMGA1,2 | NonredundantMotifs:93 | |
| JASPAR | MA0155.1 | INSM1 | NonredundantMotifs:94 | |
| HOCOMOCO | PLAG1_f1 | NonredundantMotifs:95 | ||
| JASPAR | MA0068.1 | Pax4 | NonredundantMotifs:96 | |
| HOCOMOCO | HINFP_f1 | NonredundantMotifs:97 | ||
| UNIPROBE | Klf7_secondary | SCI09 | NonredundantMotifs:98 | |
| SWISSREGULON | POU1F1.p2 | POU1F1 | NonredundantMotifs:99 |
