Personal tools

NonredundantMotifs:150

From FANTOM5_SSTAR

Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant150
  • db :SWISSREGULON
  • Id :HOX(A5,B5).p2
  • name :HOX(A5,B5)
  • score :1.4757324038886515
  • External refs:
EntrezGene:3202
UniProt:3202

EntrezGene:3215
UniProt:3215

  • Internal refs:
EntrezGene:3202

EntrezGene:3215


Motif matrix
POACGT
132.65236949.64528425.143821168.016337
219.79540271.148238133.8714450.642731
319.642589185.48069331.57687238.757657
457.977116143.14349711.03945363.297745
578.367393124.774557.61795864.69791
684.00714774.63056527.24881989.57128
725.856554137.22725443.77871668.595287
855.37305767.4381217.193718145.452915
921.144388114.76780721.359345118.186271
1021.203892237.7246683.47377513.055476
1130.259889178.84181514.02501352.331094
1221.589623152.351042.35752599.159623
1340.6671191.6918276.30092536.797959
14229.54238312.39794523.00923610.508247
155.70805313.1037874.830926251.815045
162.45955624.5151588.16236240.320737
17220.7560120.51255717.87786616.311378
185.76139687.84636779.469502102.380546
196.26704454.1240064.948551210.11821
2040.42028180.953905112.98499641.098629
2146.749459111.12712559.81425157.766976
2284.09611419.7911182.632300999999988.9382860000001
2350.564299128.67888129.27732766.937304
2479.05025770.61271673.77810152.016737
2596.148222115.56284419.10036644.646379
2661.147827123.78027647.45966543.070043
2766.520138107.6006728.09419393.242808
2817.556557109.967295.51005142.423914
2928.959766177.76319332.96367235.77118
3098.22971775.05595550.3022151.869929

Sub Motif Members