Personal tools

NonredundantMotifs:92

From FANTOM5_SSTAR

Jump to: navigation, search

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant92
  • db :UNIPROBE
  • Id :Ehf_secondary
  • name :SCI09
  • score :0.04791293325516849
  • External refs:
EntrezGene:26298
UniProt:26298

  • Internal refs:
EntrezGene:26298


Motif matrix
P0ACGT
10.3072054496410490.03444038904264230.1066345408368920.551719620479416
20.3634032432330310.1090441422300460.178564469927010.348988144609913
30.2964094071308070.241178610441790.3596659636558120.10274601877159
40.2393038731313860.1138145042125110.2747251790327670.372156443623336
50.7424038840166890.06315843310402750.1215733395249760.0728643433543076
60.1606921302094690.2335924946441630.2600620896023880.34565328554398
70.07399934857278120.01400674509679340.01248630511173260.899507601218693
80.07487414754795360.01429811964284880.009906601584890790.900921131224307
90.02262328252785550.9259657620103930.008377838138560890.0430331173231908
100.02772262378733680.9219073340331970.0200876343863890.0302824077930776
110.02940495776188670.07496524312899420.5954997710770430.300130028032077
120.7764221412243450.08302448963961680.04112391889373610.0994294502423021
130.2701884552098090.1580442534616940.1349400078189180.436827283509579
140.07056362897872530.5455061407892960.3454632733238110.0384669569081674
150.316961673622890.1289382440215210.1518257003131540.402274382042435
160.3279401239750010.1061221522870440.1040968656135080.461840858124447

Sub Motif Members