FFCP PHASE1:Hg19::chr5:57410438..57410450,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 8: | Line 8: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000054;5.26e-07;2!CL:0000137;5.26e-07;2!CL:0000092;5.26e-07;2!CL:1000415;9.81e-07;2!CL:0002535;9.81e-07;2 | |ontology_enrichment_celltype_v019=CL:0000054;5.26e-07;2!CL:0000137;5.26e-07;2!CL:0000092;5.26e-07;2!CL:1000415;9.81e-07;2!CL:0002535;9.81e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000054,5.11e-07,2;CL:0000137,5.11e-07,2;CL:0000092,5.11e-07,2;CL:0002535,9.02e-07,2;CL:1000415,9.54e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;9.81e-07;2 | |ontology_enrichment_development_v019=UBERON:0010122;9.81e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1115;3.98e-09;20!DOID:4074;4.56e-07;2!DOID:4905;4.56e-07;2!DOID:3498;4.56e-07;2!DOID:200;5.26e-07;2!DOID:4305;5.26e-07;2 | |ontology_enrichment_disease_v019=DOID:1115;3.98e-09;20!DOID:4074;4.56e-07;2!DOID:4905;4.56e-07;2!DOID:3498;4.56e-07;2!DOID:200;5.26e-07;2!DOID:4305;5.26e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1115,4.11e-09,20;DOID:0050687,8.38e-08,143;DOID:162,3.24e-07,235;DOID:4074,4.56e-07,2;DOID:4905,4.56e-07,2;DOID:3498,4.56e-07,2;DOID:14566,5.06e-07,239;DOID:200,5.11e-07,2;DOID:4305,5.11e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000349!1.89e-12!5;UBERON:0002420!1.26e-10!9;UBERON:0007245!1.26e-10!9;UBERON:0010009!1.26e-10!9;UBERON:0010011!1.26e-10!9;UBERON:0000454!1.26e-10!9;UBERON:0000369!1.79e-09!4;UBERON:0002435!1.79e-09!4;UBERON:0000204!1.79e-09!4;UBERON:0010082!1.79e-09!4;UBERON:0001876!1.24e-08!2 | |ontology_enrichment_uberon=UBERON:0000349!1.89e-12!5;UBERON:0002420!1.26e-10!9;UBERON:0007245!1.26e-10!9;UBERON:0010009!1.26e-10!9;UBERON:0010011!1.26e-10!9;UBERON:0000454!1.26e-10!9;UBERON:0000369!1.79e-09!4;UBERON:0002435!1.79e-09!4;UBERON:0000204!1.79e-09!4;UBERON:0010082!1.79e-09!4;UBERON:0001876!1.24e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000369;2.24e-25;4!UBERON:0002435;2.24e-25;4!UBERON:0000204;2.24e-25;4!UBERON:0002420;8.99e-20;9!UBERON:0007245;8.99e-20;9!UBERON:0010009;8.99e-20;9!UBERON:0010011;8.99e-20;9!UBERON:0000454;8.99e-20;9!UBERON:0005383;8.44e-16;3!UBERON:0005382;8.44e-16;3!UBERON:0009663;8.70e-15;7!UBERON:0001874;9.37e-13;1!UBERON:0001882;3.26e-12;1!UBERON:0005403;3.26e-12;1!UBERON:0000125;1.24e-11;9!UBERON:0002308;1.24e-11;9!UBERON:0000349;1.21e-09;5!UBERON:0002294;3.10e-07;7!UBERON:0001173;3.10e-07;7!UBERON:0001876;9.81e-07;2!UBERON:0001873;9.81e-07;2!UBERON:0006955;9.81e-07;2!UBERON:0004801;9.81e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0000369;2.24e-25;4!UBERON:0002435;2.24e-25;4!UBERON:0000204;2.24e-25;4!UBERON:0002420;8.99e-20;9!UBERON:0007245;8.99e-20;9!UBERON:0010009;8.99e-20;9!UBERON:0010011;8.99e-20;9!UBERON:0000454;8.99e-20;9!UBERON:0005383;8.44e-16;3!UBERON:0005382;8.44e-16;3!UBERON:0009663;8.70e-15;7!UBERON:0001874;9.37e-13;1!UBERON:0001882;3.26e-12;1!UBERON:0005403;3.26e-12;1!UBERON:0000125;1.24e-11;9!UBERON:0002308;1.24e-11;9!UBERON:0000349;1.21e-09;5!UBERON:0002294;3.10e-07;7!UBERON:0001173;3.10e-07;7!UBERON:0001876;9.81e-07;2!UBERON:0001873;9.81e-07;2!UBERON:0006955;9.81e-07;2!UBERON:0004801;9.81e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.34e-25,4;UBERON:0002435,2.34e-25,4;UBERON:0000204,2.34e-25,4;UBERON:0010082,2.34e-25,4;UBERON:0002420,7.77e-20,9;UBERON:0007245,7.77e-20,9;UBERON:0010009,7.77e-20,9;UBERON:0010011,7.77e-20,9;UBERON:0000454,7.77e-20,9;UBERON:0005383,7.27e-16,3;UBERON:0005382,7.27e-16,3;UBERON:0009663,8.91e-15,7;UBERON:0001874,9.92e-13,1;UBERON:0001882,4.31e-12,1;UBERON:0005403,4.31e-12,1;UBERON:0000125,1.26e-11,9;UBERON:0002308,1.26e-11,9;UBERON:0000349,1.16e-09,5;UBERON:0001876,8.06e-07,2;UBERON:0001873,8.52e-07,2;UBERON:0010122,8.52e-07,2;UBERON:0006955,9.02e-07,2;UBERON:0004801,9.02e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.89694817844431,0,0,0,0.206105058476878,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0.425325291727159,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.562677665642051,2.11486539543521,0,0,0,0,0,0,0,0,3.05552393900911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92954301800653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9946265673865,0,0,0,0,0,0,0,0,0,0,0.284609546029793,1.24807205711825,0,0,1.65412492502765,0,0,0,0,0,0,0,0,2.05562886970126,0,0,0,1.52301758477914,0,0,0,0,0,0,1.11827282008889,0,0.135904206073614,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55582032678133,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,5.32501690944818,0,15.7598180151709,0,0,6.71418754594348,0.578742114812744,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15612605173627,0,0,0,0,0,0,0,0,0,0,0,7.24625981387618,0,0,0,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.07020154622009,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.89694817844431,0,0,0,0.206105058476878,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839910640994298,0.425325291727159,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9882952955326,0.562677665642051,2.11486539543521,0,0,0,0,0,0,0,0,3.05552393900911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.92954301800653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.9946265673865,0,0,0,0,0,0,0,0,0,0,0.284609546029793,1.24807205711825,0,0,1.65412492502765,0,0,0,0,0,0,0,0,2.05562886970126,0,0,0,1.52301758477914,0,0,0,0,0,0,1.11827282008889,0,0.135904206073614,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55582032678133,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0.226705925512272,5.32501690944818,0,15.7598180151709,0,0,6.71418754594348,0.578742114812744,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15612605173627,0,0,0,0,0,0,0,0,0,0,0,7.24625981387618,0,0,0,0.80682027481408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.07020154622009,0,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:57410438..57410450,+ | |short_description=p@chr5:57410438..57410450,+ | ||
}} | }} |
Revision as of 23:05, 17 November 2012
Short description: | p@chr5:57410438..57410450, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:57410438..57410450, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 5.11e-07 | 2 |
osteocyte | 5.11e-07 | 2 |
osteoclast | 5.11e-07 | 2 |
epithelial cell of cervix | 9.02e-07 | 2 |
epithelial cell of gall bladder | 9.54e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 2.34e-25 | 4 |
striatum | 2.34e-25 | 4 |
ventral part of telencephalon | 2.34e-25 | 4 |
future corpus striatum | 2.34e-25 | 4 |
basal ganglion | 7.77e-20 | 9 |
nuclear complex of neuraxis | 7.77e-20 | 9 |
aggregate regional part of brain | 7.77e-20 | 9 |
collection of basal ganglia | 7.77e-20 | 9 |
cerebral subcortex | 7.77e-20 | 9 |
caudate-putamen | 7.27e-16 | 3 |
dorsal striatum | 7.27e-16 | 3 |
telencephalic nucleus | 8.91e-15 | 7 |
putamen | 9.92e-13 | 1 |
nucleus accumbens | 4.31e-12 | 1 |
ventral striatum | 4.31e-12 | 1 |
neural nucleus | 1.26e-11 | 9 |
nucleus of brain | 1.26e-11 | 9 |
limbic system | 1.16e-09 | 5 |
amygdala | 8.06e-07 | 2 |
caudate nucleus | 8.52e-07 | 2 |
future caudate nucleus | 8.52e-07 | 2 |
uterine epithelium | 9.02e-07 | 2 |
cervix epithelium | 9.02e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 4.11e-09 | 20 |
cell type cancer | 8.38e-08 | 143 |
cancer | 3.24e-07 | 235 |
pancreas adenocarcinoma | 4.56e-07 | 2 |
pancreatic carcinoma | 4.56e-07 | 2 |
pancreatic ductal adenocarcinoma | 4.56e-07 | 2 |
disease of cellular proliferation | 5.06e-07 | 239 |
giant cell tumor | 5.11e-07 | 2 |
bone giant cell tumor | 5.11e-07 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.