UBERON:0001876
From FANTOM5_SSTAR
Name: | amygdala | ||
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Namespace: | FANTOM | ||
Definition: | "Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [FMA:61841, Wikipedia:Amygdala] | ||
Xrefs: |
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Synonyms: |
"amygdaloid area" RELATED [] "amygdaloid body" EXACT [] "amygdaloid complex" EXACT [NIF_GrossAnatomy:birnlex_1241] "amygdaloid nuclear complex" EXACT [] "amygdaloid nuclear group" RELATED [BTO:0001042] "amygdaloid nuclear groups" EXACT [] "archistriatum" EXACT [] "corpus amygdaloideum" RELATED [BTO:0001042] "corpus amygdaloideum" RELATED LATIN [Wikipedia:Amygdala] "nucleus amygdalae" RELATED [BTO:0001042] | ||
Comments: | AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype | ||
Alt_id: | UBERON:FMA_61841-MA_0000887-MIAA_0000289 | ||
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002420(basal ganglion),UBERON:0016538(cortex of temporal lobe) |
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part_of: | UBERON:0000349(limbic system),UBERON:0001869(cerebral hemisphere),UBERON:0001871(temporal lobe) |
Children
is a: | FF:10360-105E9 (amygdala, newborn, donor10223) |
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derives from: | FF:0010151 (human amygdala - adult donor sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10151-102I7 (amygdala, adult, donor10252)
- 10167-103B5 (amygdala - adult, donor10196)
- 10360-105E9 (amygdala, newborn, donor10223)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001876 (amygdala), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
4.61e-131 | FFCP PHASE2:Hg19::chr9:34502907..34502912,-#_06d43d3a78b82e1d2bf4b25e4802638a | p@chr9:34502907..34502912, - |
4.61e-131 | FFCP PHASE1:Hg19::chr8:54745692..54745698,-#_06d43d3a78b82e1d2bf4b25e4802638a | p11@ATP6V1H |
4.61e-131 | FFCP PHASE2:Hg19::chr8:54745692..54745698,-#_06d43d3a78b82e1d2bf4b25e4802638a | p11@ATP6V1H |
4.61e-131 | FFCP PHASE1:Hg19::chr9:34502907..34502912,-#_06d43d3a78b82e1d2bf4b25e4802638a | p@chr9:34502907..34502912, - |
1.75e-130 | FFCP PHASE1:Hg19::chr6:1035766..1035777,+#_fd548d3fe537643d37b58265af453cd9 | p@chr6:1035766..1035777, + |
1.75e-130 | FFCP PHASE2:Hg19::chr6:1035766..1035777,+#_fd548d3fe537643d37b58265af453cd9 | p@chr6:1035766..1035777, + |
1.56e-79 | FFCP PHASE1:Hg19::chr4:118735142..118735153,-#_e08f2b1e799c2db1f81135b800d33d91 | p@chr4:118735142..118735153, - |
1.56e-79 | FFCP PHASE2:Hg19::chr4:118735142..118735153,-#_e08f2b1e799c2db1f81135b800d33d91 | p@chr4:118735142..118735153, - |
2.34e-79 | FFCP PHASE1:Hg19::chr11:74047383..74047406,-#_19c691dab406fd324c5364db67158b16 | p@chr11:74047383..74047406, - |
2.34e-79 | FFCP PHASE2:Hg19::chr11:74047383..74047406,-#_19c691dab406fd324c5364db67158b16 | p@chr11:74047383..74047406, - |
1.16e-78 | FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_2f4d9aaad96441df33b1c87896573bd2 | p2@ENST00000505721 |
1.16e-78 | FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_2f4d9aaad96441df33b1c87896573bd2 | p2@ENST00000505721 |
2.84e-66 | FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_e771b4986817677721234a8c1514080d | p@chr15:40582949..40582989, + |
2.84e-66 | FFCP PHASE2:Hg19::chr12:81992190..81992193,-#_e771b4986817677721234a8c1514080d | p20@PPFIA2 |
2.84e-66 | FFCP PHASE1:Hg19::chr12:81992190..81992193,-#_e771b4986817677721234a8c1514080d | p20@PPFIA2 |
2.84e-66 | FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_e771b4986817677721234a8c1514080d | p@chr15:40582949..40582989, + |
5.53e-66 | FFCP PHASE1:Hg19::chr10:106423509..106423521,+#_36446c2fbf7502c8f90c76b7c0392f31 | p@chr10:106423509..106423521, + |
5.53e-66 | FFCP PHASE2:Hg19::chr10:106423509..106423521,+#_36446c2fbf7502c8f90c76b7c0392f31 | p@chr10:106423509..106423521, + |
1.13e-57 | FFCP PHASE2:Hg19::chr1:20813796..20813807,-#_0375e5bc0dfbf040666b41d29a7dfdc8 | p@chr1:20813796..20813807, - |
1.13e-57 | FFCP PHASE1:Hg19::chr1:20813796..20813807,-#_0375e5bc0dfbf040666b41d29a7dfdc8 | p@chr1:20813796..20813807, - |
6.36e-57 | FFCP PHASE1:Hg19::chr17:49500350..49500395,+#_317b30fa0fc63b1741c6aa5363290220 | p@chr17:49500350..49500395, + |
6.36e-57 | FFCP PHASE2:Hg19::chr17:49500350..49500395,+#_317b30fa0fc63b1741c6aa5363290220 | p@chr17:49500350..49500395, + |
1.13e-56 | FFCP PHASE2:Hg19::chr16:61719084..61719087,-#_ae288ac728861114bac4ba999f56d1be | p@chr16:61719084..61719087, - |
1.13e-56 | FFCP PHASE1:Hg19::chr16:61719084..61719087,-#_ae288ac728861114bac4ba999f56d1be | p@chr16:61719084..61719087, - |
8.82e-51 | FFCP PHASE2:Hg19::chr8:117658838..117658848,-#_86c6804d31a5e724be02ca8d4185cc74 | p@chr8:117658838..117658848, - |
8.82e-51 | FFCP PHASE1:Hg19::chr13:101712292..101712306,-#_86c6804d31a5e724be02ca8d4185cc74 | p@chr13:101712292..101712306, - |
8.82e-51 | FFCP PHASE2:Hg19::chr1:62439037..62439047,+#_86c6804d31a5e724be02ca8d4185cc74 | p13@INADL |
8.82e-51 | FFCP PHASE1:Hg19::chr8:117658838..117658848,-#_86c6804d31a5e724be02ca8d4185cc74 | p@chr8:117658838..117658848, - |
8.82e-51 | FFCP PHASE2:Hg19::chr13:101712292..101712306,-#_86c6804d31a5e724be02ca8d4185cc74 | p@chr13:101712292..101712306, - |
8.82e-51 | FFCP PHASE1:Hg19::chr1:62439037..62439047,+#_86c6804d31a5e724be02ca8d4185cc74 | p13@INADL |
1.14e-50 | FFCP PHASE1:Hg19::chr8:132052458..132052469,-#_861bbde162451cf5b884392749825520 | p4@ADCY8 |
1.14e-50 | FFCP PHASE2:Hg19::chr8:132052458..132052469,-#_861bbde162451cf5b884392749825520 | p4@ADCY8 |
2.42e-50 | FFCP PHASE1:Hg19::chr4:46391569..46391580,-#_6d68f5ef5f4e690be238abc8715c9290 | p17@GABRA2 |
2.42e-50 | FFCP PHASE2:Hg19::chr4:46391569..46391580,-#_6d68f5ef5f4e690be238abc8715c9290 | p17@GABRA2 |
2.74e-50 | FFCP PHASE2:Hg19::chr16:5945370..5945377,+#_efb2331a83b9eab944fa20d91e2bc566 | p@chr16:5945370..5945377, + |
2.74e-50 | FFCP PHASE2:Hg19::chr4:46247082..46247090,-#_efb2331a83b9eab944fa20d91e2bc566 | p@chr4:46247082..46247090, - |
2.74e-50 | FFCP PHASE1:Hg19::chr16:5945370..5945377,+#_efb2331a83b9eab944fa20d91e2bc566 | p@chr16:5945370..5945377, + |
2.74e-50 | FFCP PHASE1:Hg19::chr11:63486158..63486182,+#_efb2331a83b9eab944fa20d91e2bc566 | p@chr11:63486158..63486182, + |
2.74e-50 | FFCP PHASE1:Hg19::chr4:46247082..46247090,-#_efb2331a83b9eab944fa20d91e2bc566 | p@chr4:46247082..46247090, - |
2.74e-50 | FFCP PHASE2:Hg19::chr11:63486158..63486182,+#_efb2331a83b9eab944fa20d91e2bc566 | p@chr11:63486158..63486182, + |
4.0e-50 | FFCP PHASE2:Hg19::chr12:133195356..133195367,+#_c3d8492818b0e69d9ccd08682c46e520 | p3@P2RX2 |
4.0e-50 | FFCP PHASE1:Hg19::chr12:133195356..133195367,+#_c3d8492818b0e69d9ccd08682c46e520 | p3@P2RX2 |
4.52e-50 | FFCP PHASE1:Hg19::chr5:161530948..161530957,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr5:161530948..161530957, + |
4.52e-50 | FFCP PHASE2:Hg19::chr4:160189108..160189117,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p44@RAPGEF2 |
4.52e-50 | FFCP PHASE2:Hg19::chr16:24372933..24372944,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr16:24372933..24372944, + |
4.52e-50 | FFCP PHASE2:Hg19::chr7:44282202..44282211,-#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p22@CAMK2B |
4.52e-50 | FFCP PHASE1:Hg19::chr20:23357397..23357407,-#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr20:23357397..23357407, - |
4.52e-50 | FFCP PHASE2:Hg19::chr5:161530948..161530957,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr5:161530948..161530957, + |
4.52e-50 | FFCP PHASE1:Hg19::chr1:181361950..181361956,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr1:181361950..181361956, + |
4.52e-50 | FFCP PHASE1:Hg19::chr16:24372933..24372944,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr16:24372933..24372944, + |
4.52e-50 | FFCP PHASE2:Hg19::chr20:55841819..55841842,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p2@ENST00000412321, p2@uc010gir.1 |
4.52e-50 | FFCP PHASE2:Hg19::chr20:23357397..23357407,-#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr20:23357397..23357407, - |
4.52e-50 | FFCP PHASE1:Hg19::chr6:132723206..132723217,-#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr6:132723206..132723217, - |
4.52e-50 | FFCP PHASE2:Hg19::chr6:132723206..132723217,-#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr6:132723206..132723217, - |
4.52e-50 | FFCP PHASE1:Hg19::chr4:160189108..160189117,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p44@RAPGEF2 |
4.52e-50 | FFCP PHASE1:Hg19::chr20:55841819..55841842,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p2@ENST00000412321, p2@uc010gir.1 |
4.52e-50 | FFCP PHASE2:Hg19::chr1:181361950..181361956,+#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p@chr1:181361950..181361956, + |
4.52e-50 | FFCP PHASE1:Hg19::chr7:44282202..44282211,-#_af81371bc9b9b6fe0d284a5cc1edb4f8 | p22@CAMK2B |
5.15e-50 | FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_1c1af045b3a57264afcea3c833396e6e | p22@GNAL |
5.15e-50 | FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_1c1af045b3a57264afcea3c833396e6e | p22@GNAL |
2.04e-45 | FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_7a19662e7712915c30dc9ae9ae836bf9 | p@chr9:95569585..95569596, + |
2.04e-45 | FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_7a19662e7712915c30dc9ae9ae836bf9 | p@chr9:95569585..95569596, + |
3.19e-45 | FFCP PHASE2:Hg19::chrX:21666936..21666940,+#_a396ba09af8d7717d5580346449f1eac | p@chrX:21666936..21666940, + |
3.19e-45 | FFCP PHASE1:Hg19::chrX:21666936..21666940,+#_a396ba09af8d7717d5580346449f1eac | p@chrX:21666936..21666940, + |
4.0e-45 | FFCP PHASE2:Hg19::chr7:107302142..107302149,-#_2f93722ad4d1379f6528887a9e54f2c6 | p3@ENST00000440512 |
4.0e-45 | FFCP PHASE1:Hg19::chr7:107302142..107302149,-#_2f93722ad4d1379f6528887a9e54f2c6 | p3@ENST00000440512 |
5.0e-45 | FFCP PHASE1:Hg19::chr11:64411144..64411154,-#_e670e6938faaffdaa354398879fc8719 | p14@NRXN2 |
5.0e-45 | FFCP PHASE1:Hg19::chr5:63258078..63258088,-#_e670e6938faaffdaa354398879fc8719 | p6@HTR1A |
5.0e-45 | FFCP PHASE2:Hg19::chr5:63258078..63258088,-#_e670e6938faaffdaa354398879fc8719 | p6@HTR1A |
5.0e-45 | FFCP PHASE2:Hg19::chr11:64411144..64411154,-#_e670e6938faaffdaa354398879fc8719 | p14@NRXN2 |
7.83e-45 | FFCP PHASE1:Hg19::chr2:173724876..173724893,+#_89d98893dc6eb6f70bb3087891394c2f | p16@RAPGEF4 |
7.83e-45 | FFCP PHASE2:Hg19::chrX:139795975..139795980,+#_89d98893dc6eb6f70bb3087891394c2f | p@chrX:139795975..139795980, + |
7.83e-45 | FFCP PHASE2:Hg19::chr2:173724876..173724893,+#_89d98893dc6eb6f70bb3087891394c2f | p16@RAPGEF4 |
7.83e-45 | FFCP PHASE1:Hg19::chrX:139795975..139795980,+#_89d98893dc6eb6f70bb3087891394c2f | p@chrX:139795975..139795980, + |
1.53e-44 | FFCP PHASE2:Hg19::chr22:42393379..42393386,+#_356b4b406afde948fbcbfc67a4e28109 | p@chr22:42393379..42393386, + |
1.53e-44 | FFCP PHASE2:Hg19::chr8:102701504..102701522,-#_356b4b406afde948fbcbfc67a4e28109 | p@chr8:102701504..102701522, - |
1.53e-44 | FFCP PHASE1:Hg19::chr22:42393379..42393386,+#_356b4b406afde948fbcbfc67a4e28109 | p@chr22:42393379..42393386, + |
1.53e-44 | FFCP PHASE1:Hg19::chr8:102701504..102701522,-#_356b4b406afde948fbcbfc67a4e28109 | p@chr8:102701504..102701522, - |
1.91e-44 | FFCP PHASE2:Hg19::chr9:87425922..87425930,+#_8de960619b14f7974f57c8ae9621b946 | p47@NTRK2 |
1.91e-44 | FFCP PHASE1:Hg19::chr9:87425922..87425930,+#_8de960619b14f7974f57c8ae9621b946 | p47@NTRK2 |
1.91e-44 | FFCP PHASE2:Hg19::chrX:152587216..152587232,-#_8de960619b14f7974f57c8ae9621b946 | p@chrX:152587216..152587232, - |
1.91e-44 | FFCP PHASE1:Hg19::chrX:152587216..152587232,-#_8de960619b14f7974f57c8ae9621b946 | p@chrX:152587216..152587232, - |
3.99e-41 | FFCP PHASE2:Hg19::chr19:51164823..51164832,-#_070ea400a67140d79e16555af4b8f913 | p@chr19:51164823..51164832, - |
3.99e-41 | FFCP PHASE2:Hg19::chr11:99941186..99941205,+#_070ea400a67140d79e16555af4b8f913 | p5@CNTN5 |
3.99e-41 | FFCP PHASE1:Hg19::chr19:51164823..51164832,-#_070ea400a67140d79e16555af4b8f913 | p@chr19:51164823..51164832, - |
3.99e-41 | FFCP PHASE1:Hg19::chr11:99941186..99941205,+#_070ea400a67140d79e16555af4b8f913 | p5@CNTN5 |
4.89e-41 | FFCP PHASE1:Hg19::chr3:113023157..113023168,-#_5c907bc368d1d889b1e2bc49d3dfe343 | p4@WDR52 |
4.89e-41 | FFCP PHASE2:Hg19::chr3:113023157..113023168,-#_5c907bc368d1d889b1e2bc49d3dfe343 | p4@WDR52 |
5.99e-41 | FFCP PHASE2:Hg19::chr2:242815160..242815176,+#_9a751438967fe08b65039e3d8f00fc3b | p@chr2:242815160..242815176, + |
5.99e-41 | FFCP PHASE1:Hg19::chr2:242815160..242815176,+#_9a751438967fe08b65039e3d8f00fc3b | p@chr2:242815160..242815176, + |
8.98e-41 | FFCP PHASE2:Hg19::chr4:152403542..152403579,+#_32c0c826e3888583f3ed855349957db7 | p6@FAM160A1 |
8.98e-41 | FFCP PHASE1:Hg19::chr4:152403542..152403579,+#_32c0c826e3888583f3ed855349957db7 | p6@FAM160A1 |
1.34e-40 | FFCP PHASE2:Hg19::chr11:35281815..35281828,-#_9e2f525b55847c217f828f86f0cd9ac9 | p@chr11:35281815..35281828, - |
1.34e-40 | FFCP PHASE1:Hg19::chr11:35281815..35281828,-#_9e2f525b55847c217f828f86f0cd9ac9 | p@chr11:35281815..35281828, - |
2.01e-40 | FFCP PHASE1:Hg19::chr12:71314547..71314562,-#_e884c5e658f046c53fd9a69d88c20db4 | p8@PTPRR |
2.01e-40 | FFCP PHASE2:Hg19::chr12:71314547..71314562,-#_e884c5e658f046c53fd9a69d88c20db4 | p8@PTPRR |
3.01e-40 | FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_6a53463225d6db855902a4dcb97d5da1 | p17@GNAL |
3.01e-40 | FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_6a53463225d6db855902a4dcb97d5da1 | p17@GNAL |
5.49e-40 | FFCP PHASE2:Hg19::chr10:116887377..116887393,+#_c6bf8df3902fca35a38a96ab88aa85cc | p@chr10:116887377..116887393, + |
5.49e-40 | FFCP PHASE1:Hg19::chr10:116887377..116887393,+#_c6bf8df3902fca35a38a96ab88aa85cc | p@chr10:116887377..116887393, + |