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UBERON:0000369

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Name:corpus striatum
Namespace:FANTOM
Definition:"The corpus striatum (striated body) is a compound structure consisting of the caudate nucleus and the lentiform nucleus, which consists of the putamen and the globus pallidus[WP]." [Wikipedia:Corpus_striatum]
Xrefs:
links:

BTO:0001311
EFO:0000381
EMAPA:17549
EV:0100184
FMA:77616
GAID:667
[ 200px-Gray656.png 200px-Gray656.png]
MESH:A.08.186.211.730.885.105.487
ncithesaurus:Corpus_Striatum
SCTID:279318005

VHOG:0001175
Synonyms: "striate body" RELATED [BTO:0001311]
"striated body" RELATED [BTO:0001311]
Comments:The term has been used in a few different ways: * It is a pair of nuclear masses which form the basal ganglia, along with the subthalamic nucleus and the substantia nigra. * It may also refer to both the basal ganglia and internal capsule collectively.[2] * According to the 1917 version of Gray's Anatomy, it is the combination of the lentiform nucleus (also known as the lenticular nucleus) and the caudate nucleus * According to BrainInfo it is a part of the basal ganglia comprising the globus pallidus and striatum
Alt_id: UBERON:BTO_0001311-FMA_77616

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002616(regional part of brain)
develops_from:UBERON:0010082(future corpus striatum)
part_of:UBERON:0002420(basal ganglion)



Children

derives from:FF:0011288 (mouse corpus striatum- adult sample),FF:0011392 (mouse corpus striatum- neonate N00 sample)
part of:UBERON:0001873 (caudate nucleus),UBERON:0002435 (striatum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000369 (corpus striatum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data