FF:11409-118E5: Difference between revisions
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.66208283134251e-212!GO:0005737;cytoplasm;1.08152634761794e-182!GO:0043226;organelle;1.72730010939872e-168!GO:0043229;intracellular organelle;3.19696063175414e-168!GO:0043231;intracellular membrane-bound organelle;1.41499934788408e-165!GO:0043227;membrane-bound organelle;3.13615845209462e-165!GO:0044444;cytoplasmic part;5.01840627234719e-141!GO:0044422;organelle part;1.21021805835782e-114!GO:0044446;intracellular organelle part;2.64797664401643e-113!GO:0044237;cellular metabolic process;1.13583779360325e-81!GO:0044238;primary metabolic process;5.63883669698556e-81!GO:0032991;macromolecular complex;6.94398889228126e-78!GO:0030529;ribonucleoprotein complex;4.51075284757269e-75!GO:0005739;mitochondrion;1.73454873990502e-73!GO:0043170;macromolecule metabolic process;1.31081417610859e-68!GO:0005515;protein binding;1.0392577316612e-67!GO:0043233;organelle lumen;2.50408753683962e-58!GO:0031974;membrane-enclosed lumen;2.50408753683962e-58!GO:0005634;nucleus;2.29132271493082e-52!GO:0005840;ribosome;9.68490816247434e-52!GO:0003723;RNA binding;1.79657688957866e-50!GO:0044428;nuclear part;1.48766647519553e-49!GO:0031090;organelle membrane;6.35899090091495e-49!GO:0044429;mitochondrial part;3.81267041223791e-47!GO:0006412;translation;4.44643953003184e-46!GO:0003735;structural constituent of ribosome;1.05999519999853e-45!GO:0019538;protein metabolic process;6.58036160216764e-45!GO:0009058;biosynthetic process;6.73893856151981e-43!GO:0044260;cellular macromolecule metabolic process;9.3011283011049e-41!GO:0044267;cellular protein metabolic process;2.68133183223616e-39!GO:0033279;ribosomal subunit;2.84035094699783e-39!GO:0044249;cellular biosynthetic process;1.33942431232322e-38!GO:0016043;cellular component organization and biogenesis;2.73058796859598e-38!GO:0009059;macromolecule biosynthetic process;3.79765771927043e-38!GO:0043234;protein complex;9.32963887219901e-38!GO:0015031;protein transport;1.82118363787734e-37!GO:0005829;cytosol;2.69185903116833e-37!GO:0031967;organelle envelope;1.14428083295647e-36!GO:0010467;gene expression;1.56489602382789e-36!GO:0031975;envelope;1.96376116797139e-36!GO:0033036;macromolecule localization;3.38430926482515e-36!GO:0045184;establishment of protein localization;9.42440275106636e-35!GO:0008104;protein localization;3.1878704080398e-34!GO:0006396;RNA processing;3.49040540079927e-34!GO:0043283;biopolymer metabolic process;7.98789170719095e-33!GO:0005740;mitochondrial envelope;9.91229074966742e-31!GO:0031981;nuclear lumen;1.68856795705933e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.70345843213919e-29!GO:0016071;mRNA metabolic process;1.8432099996829e-29!GO:0031966;mitochondrial membrane;2.5260275751591e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.2873459473139e-28!GO:0019866;organelle inner membrane;2.02647535430779e-28!GO:0046907;intracellular transport;6.34395176993592e-27!GO:0005743;mitochondrial inner membrane;6.4320248223538e-27!GO:0008380;RNA splicing;9.750414920477e-27!GO:0065003;macromolecular complex assembly;1.12834501090583e-26!GO:0006886;intracellular protein transport;3.55950312298859e-25!GO:0006397;mRNA processing;8.61748884071551e-25!GO:0022607;cellular component assembly;2.31765968253195e-24!GO:0006119;oxidative phosphorylation;1.04479066774642e-22!GO:0006996;organelle organization and biogenesis;1.76545714198067e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.13883977548794e-22!GO:0043228;non-membrane-bound organelle;1.02703954563161e-21!GO:0043232;intracellular non-membrane-bound organelle;1.02703954563161e-21!GO:0044455;mitochondrial membrane part;3.02550348307827e-21!GO:0044445;cytosolic part;5.33931191975039e-21!GO:0005783;endoplasmic reticulum;1.50691197554431e-20!GO:0015935;small ribosomal subunit;1.52560078378714e-20!GO:0031980;mitochondrial lumen;1.66299114137009e-20!GO:0005759;mitochondrial matrix;1.66299114137009e-20!GO:0015934;large ribosomal subunit;6.99551481531504e-20!GO:0005654;nucleoplasm;3.67024932547797e-19!GO:0005681;spliceosome;1.78978358582382e-18!GO:0005746;mitochondrial respiratory chain;3.07238817489277e-18!GO:0051186;cofactor metabolic process;4.31287618563405e-18!GO:0006457;protein folding;7.28082400324241e-18!GO:0048770;pigment granule;1.11804305426793e-17!GO:0042470;melanosome;1.11804305426793e-17!GO:0012505;endomembrane system;1.28909471095482e-17!GO:0044432;endoplasmic reticulum part;6.09014565785075e-17!GO:0008134;transcription factor binding;8.3654837869375e-17!GO:0044451;nucleoplasm part;1.05145545897004e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.51822506580955e-16!GO:0003676;nucleic acid binding;5.01783279022518e-16!GO:0051649;establishment of cellular localization;8.10494738145432e-16!GO:0005794;Golgi apparatus;9.66644301000801e-16!GO:0051641;cellular localization;1.20881780331344e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.34876111725847e-15!GO:0003954;NADH dehydrogenase activity;1.34876111725847e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.34876111725847e-15!GO:0022618;protein-RNA complex assembly;3.26577967521516e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.45732479376738e-15!GO:0005761;mitochondrial ribosome;5.15761370962328e-15!GO:0000313;organellar ribosome;5.15761370962328e-15!GO:0016874;ligase activity;7.83787322097141e-15!GO:0016070;RNA metabolic process;1.11444847846589e-14!GO:0006732;coenzyme metabolic process;5.25447135103648e-14!GO:0043285;biopolymer catabolic process;5.75377790784349e-14!GO:0000502;proteasome complex (sensu Eukaryota);7.62409203248309e-14!GO:0006605;protein targeting;8.37887804724349e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.50641279621194e-14!GO:0030964;NADH dehydrogenase complex (quinone);8.89213295032301e-14!GO:0045271;respiratory chain complex I;8.89213295032301e-14!GO:0005747;mitochondrial respiratory chain complex I;8.89213295032301e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.06329110658458e-13!GO:0042773;ATP synthesis coupled electron transport;1.06329110658458e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.13111426455252e-13!GO:0016462;pyrophosphatase activity;1.52385032098095e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.63083863814951e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97571778083112e-13!GO:0006512;ubiquitin cycle;2.14008851423914e-13!GO:0006259;DNA metabolic process;2.35236048421332e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.77814713706488e-13!GO:0044265;cellular macromolecule catabolic process;4.07568787587324e-13!GO:0008135;translation factor activity, nucleic acid binding;6.24976414271153e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.09375089721827e-12!GO:0017111;nucleoside-triphosphatase activity;1.50308020479264e-12!GO:0005793;ER-Golgi intermediate compartment;1.5926966312483e-12!GO:0009057;macromolecule catabolic process;1.92513938743695e-12!GO:0019941;modification-dependent protein catabolic process;2.16675860726443e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.16675860726443e-12!GO:0044248;cellular catabolic process;2.19475870979414e-12!GO:0048193;Golgi vesicle transport;2.28072197501272e-12!GO:0044257;cellular protein catabolic process;2.51754100054505e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.65351261024346e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.96075964688153e-12!GO:0030163;protein catabolic process;3.75963854282067e-12!GO:0005730;nucleolus;4.74403891586982e-12!GO:0005789;endoplasmic reticulum membrane;4.94020338394463e-12!GO:0051082;unfolded protein binding;1.09566993198532e-11!GO:0000166;nucleotide binding;1.20211866707504e-11!GO:0016192;vesicle-mediated transport;1.78100198560476e-11!GO:0009055;electron carrier activity;2.20239760263685e-11!GO:0016491;oxidoreductase activity;3.45072438217831e-11!GO:0003743;translation initiation factor activity;1.81211303745792e-10!GO:0006163;purine nucleotide metabolic process;3.448012276254e-10!GO:0003712;transcription cofactor activity;4.23998095066007e-10!GO:0009150;purine ribonucleotide metabolic process;4.33561180291109e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.49694243156905e-10!GO:0000375;RNA splicing, via transesterification reactions;5.49694243156905e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.49694243156905e-10!GO:0006413;translational initiation;5.54177508223363e-10!GO:0009259;ribonucleotide metabolic process;6.77231934652862e-10!GO:0012501;programmed cell death;8.21920532006418e-10!GO:0006446;regulation of translational initiation;8.31447042479954e-10!GO:0006164;purine nucleotide biosynthetic process;1.06696394044032e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.15855988454026e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.26038381673345e-09!GO:0006915;apoptosis;1.78459759273786e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.43454200988081e-09!GO:0009060;aerobic respiration;2.78695812672272e-09!GO:0051188;cofactor biosynthetic process;2.84341503178783e-09!GO:0043412;biopolymer modification;3.99329658507565e-09!GO:0009260;ribonucleotide biosynthetic process;4.70437335932639e-09!GO:0050794;regulation of cellular process;5.8693059686614e-09!GO:0048523;negative regulation of cellular process;7.26673120413308e-09!GO:0008219;cell death;7.45781634682755e-09!GO:0016265;death;7.45781634682755e-09!GO:0045333;cellular respiration;8.96030202184219e-09!GO:0017038;protein import;8.96030202184219e-09!GO:0008639;small protein conjugating enzyme activity;1.02860367690117e-08!GO:0006366;transcription from RNA polymerase II promoter;1.06093285716894e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.08713738683647e-08!GO:0016604;nuclear body;1.27323923160374e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.38276897351642e-08!GO:0008565;protein transporter activity;1.38276897351642e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.38276897351642e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.38276897351642e-08!GO:0006913;nucleocytoplasmic transport;1.38276897351642e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.58738987233263e-08!GO:0004842;ubiquitin-protein ligase activity;2.0894231344003e-08!GO:0009141;nucleoside triphosphate metabolic process;2.56727485174273e-08!GO:0009056;catabolic process;2.77224060342776e-08!GO:0015986;ATP synthesis coupled proton transport;2.96936463587912e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.96936463587912e-08!GO:0051169;nuclear transport;3.58865241467948e-08!GO:0006464;protein modification process;4.17853684553566e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.77822405827208e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.14793727009692e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.14793727009692e-08!GO:0009117;nucleotide metabolic process;5.52151461227868e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.06466029202028e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.06466029202028e-08!GO:0007049;cell cycle;8.38983495288036e-08!GO:0019787;small conjugating protein ligase activity;8.8430443835671e-08!GO:0042254;ribosome biogenesis and assembly;1.01465287156751e-07!GO:0019829;cation-transporting ATPase activity;1.03455887613783e-07!GO:0006091;generation of precursor metabolites and energy;1.07237595706662e-07!GO:0017076;purine nucleotide binding;1.1500386349997e-07!GO:0046034;ATP metabolic process;1.352975322889e-07!GO:0005635;nuclear envelope;1.47809102316353e-07!GO:0006323;DNA packaging;1.5737204018932e-07!GO:0005768;endosome;1.76035392746691e-07!GO:0006099;tricarboxylic acid cycle;1.99358456517179e-07!GO:0046356;acetyl-CoA catabolic process;1.99358456517179e-07!GO:0048519;negative regulation of biological process;1.99358456517179e-07!GO:0006461;protein complex assembly;2.16024560855715e-07!GO:0050789;regulation of biological process;2.31091520881731e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.33984217074934e-07!GO:0032553;ribonucleotide binding;2.33984217074934e-07!GO:0032555;purine ribonucleotide binding;2.33984217074934e-07!GO:0030120;vesicle coat;2.33984217074934e-07!GO:0030662;coated vesicle membrane;2.33984217074934e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.54098913393928e-07!GO:0009108;coenzyme biosynthetic process;2.68775831345251e-07!GO:0065004;protein-DNA complex assembly;2.71458362602444e-07!GO:0051246;regulation of protein metabolic process;3.13820696293829e-07!GO:0048475;coated membrane;3.13820696293829e-07!GO:0030117;membrane coat;3.13820696293829e-07!GO:0005773;vacuole;3.19107222412818e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.23363836112378e-07!GO:0031965;nuclear membrane;3.46803987379225e-07!GO:0006754;ATP biosynthetic process;4.19109082967287e-07!GO:0006753;nucleoside phosphate metabolic process;4.19109082967287e-07!GO:0006084;acetyl-CoA metabolic process;5.95887607497381e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.99643451280223e-07!GO:0051187;cofactor catabolic process;7.15062359899448e-07!GO:0003924;GTPase activity;8.77684427908706e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.01017798208081e-06!GO:0005770;late endosome;1.01017798208081e-06!GO:0005788;endoplasmic reticulum lumen;1.04252745995791e-06!GO:0043687;post-translational protein modification;1.08689663228229e-06!GO:0016881;acid-amino acid ligase activity;1.12767541854631e-06!GO:0009109;coenzyme catabolic process;1.13097842243791e-06!GO:0016607;nuclear speck;1.64390979640972e-06!GO:0044431;Golgi apparatus part;1.85409237478559e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.13029136884115e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.13029136884115e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.13029136884115e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.14064765823267e-06!GO:0006399;tRNA metabolic process;2.24643969447499e-06!GO:0051276;chromosome organization and biogenesis;2.35538150291864e-06!GO:0007005;mitochondrion organization and biogenesis;2.37974866471733e-06!GO:0044453;nuclear membrane part;2.54571714233553e-06!GO:0042981;regulation of apoptosis;2.70954470235581e-06!GO:0043067;regulation of programmed cell death;2.7804345832787e-06!GO:0045259;proton-transporting ATP synthase complex;3.20445380623928e-06!GO:0000323;lytic vacuole;3.5384990067176e-06!GO:0005764;lysosome;3.5384990067176e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.64252197975633e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.6481615699442e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.68725226794774e-06!GO:0043069;negative regulation of programmed cell death;3.86287521656445e-06!GO:0043038;amino acid activation;3.87060332827326e-06!GO:0006418;tRNA aminoacylation for protein translation;3.87060332827326e-06!GO:0043039;tRNA aminoacylation;3.87060332827326e-06!GO:0031988;membrane-bound vesicle;4.2027180701909e-06!GO:0042623;ATPase activity, coupled;4.3010010083028e-06!GO:0045786;negative regulation of progression through cell cycle;4.81675187824325e-06!GO:0006974;response to DNA damage stimulus;4.98004097693733e-06!GO:0008361;regulation of cell size;4.98812896981701e-06!GO:0043066;negative regulation of apoptosis;5.01913237140937e-06!GO:0008654;phospholipid biosynthetic process;5.11775496595804e-06!GO:0051170;nuclear import;5.24296692124385e-06!GO:0000151;ubiquitin ligase complex;5.35878909597137e-06!GO:0005762;mitochondrial large ribosomal subunit;5.36180746647723e-06!GO:0000315;organellar large ribosomal subunit;5.36180746647723e-06!GO:0022402;cell cycle process;5.8087289844787e-06!GO:0031252;leading edge;5.83107982711333e-06!GO:0016049;cell growth;5.87364216047428e-06!GO:0006606;protein import into nucleus;6.21172916690443e-06!GO:0004298;threonine endopeptidase activity;6.38062265029735e-06!GO:0051726;regulation of cell cycle;6.4115941760786e-06!GO:0000074;regulation of progression through cell cycle;6.70299161279592e-06!GO:0044440;endosomal part;7.22130841987076e-06!GO:0010008;endosome membrane;7.22130841987076e-06!GO:0016887;ATPase activity;7.24465498512813e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.46443633879645e-06!GO:0003713;transcription coactivator activity;7.46443633879645e-06!GO:0016563;transcription activator activity;8.15795593214184e-06!GO:0001558;regulation of cell growth;1.03264085799826e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10307761814511e-05!GO:0031982;vesicle;1.1173164831393e-05!GO:0031410;cytoplasmic vesicle;1.13248374696183e-05!GO:0006333;chromatin assembly or disassembly;1.15123801863534e-05!GO:0043566;structure-specific DNA binding;1.27439399242638e-05!GO:0006916;anti-apoptosis;1.27453776662862e-05!GO:0016853;isomerase activity;1.54558288592627e-05!GO:0065002;intracellular protein transport across a membrane;1.65489753510715e-05!GO:0016564;transcription repressor activity;1.78644781636828e-05!GO:0031324;negative regulation of cellular metabolic process;1.88562050937859e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.11784265155268e-05!GO:0032446;protein modification by small protein conjugation;2.35508239920291e-05!GO:0005667;transcription factor complex;2.418723225417e-05!GO:0006752;group transfer coenzyme metabolic process;2.66208437163942e-05!GO:0006334;nucleosome assembly;2.75329965592593e-05!GO:0006364;rRNA processing;2.77516492829986e-05!GO:0030133;transport vesicle;2.98704909356946e-05!GO:0030554;adenyl nucleotide binding;3.17711238068872e-05!GO:0019867;outer membrane;3.32447803524331e-05!GO:0005798;Golgi-associated vesicle;3.65086652768465e-05!GO:0016859;cis-trans isomerase activity;3.67080290823332e-05!GO:0016567;protein ubiquitination;3.74343256617124e-05!GO:0016072;rRNA metabolic process;3.95901833456188e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;3.98945638271757e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.39637774821934e-05!GO:0031497;chromatin assembly;4.50559607493209e-05!GO:0000245;spliceosome assembly;4.54744649890965e-05!GO:0005524;ATP binding;4.62208540548064e-05!GO:0044262;cellular carbohydrate metabolic process;4.63787399022457e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.64135768349826e-05!GO:0019843;rRNA binding;4.64135768349826e-05!GO:0031968;organelle outer membrane;4.65321691932116e-05!GO:0032559;adenyl ribonucleotide binding;5.11174182355128e-05!GO:0000278;mitotic cell cycle;5.46000093897349e-05!GO:0019222;regulation of metabolic process;6.64703489378538e-05!GO:0003697;single-stranded DNA binding;6.69793448533257e-05!GO:0016787;hydrolase activity;6.93133361508852e-05!GO:0006613;cotranslational protein targeting to membrane;7.41348422238636e-05!GO:0000139;Golgi membrane;8.29834135083871e-05!GO:0005525;GTP binding;8.35353553948252e-05!GO:0005905;coated pit;8.42299861899496e-05!GO:0009892;negative regulation of metabolic process;8.79901581200311e-05!GO:0005741;mitochondrial outer membrane;9.42992490354429e-05!GO:0005643;nuclear pore;0.000105537217240608!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000105537217240608!GO:0008026;ATP-dependent helicase activity;0.000105537217240608!GO:0009165;nucleotide biosynthetic process;0.000109211602658233!GO:0016568;chromatin modification;0.000110046125610289!GO:0030867;rough endoplasmic reticulum membrane;0.000115495768731245!GO:0003714;transcription corepressor activity;0.000117048555388216!GO:0009719;response to endogenous stimulus;0.000126015379907207!GO:0030029;actin filament-based process;0.000132111154727982!GO:0000785;chromatin;0.000137494811329699!GO:0008610;lipid biosynthetic process;0.000147446626592908!GO:0000314;organellar small ribosomal subunit;0.000150348367051936!GO:0005763;mitochondrial small ribosomal subunit;0.000150348367051936!GO:0033116;ER-Golgi intermediate compartment membrane;0.000162727482448785!GO:0004386;helicase activity;0.000191976440109101!GO:0065007;biological regulation;0.000192726325667381!GO:0005694;chromosome;0.000196322453378184!GO:0045454;cell redox homeostasis;0.000217712565836516!GO:0040008;regulation of growth;0.000231169088529574!GO:0051789;response to protein stimulus;0.000261866532233477!GO:0006986;response to unfolded protein;0.000261866532233477!GO:0043021;ribonucleoprotein binding;0.000304124400780382!GO:0046930;pore complex;0.000358433701212739!GO:0006281;DNA repair;0.000358506141132153!GO:0032561;guanyl ribonucleotide binding;0.00037187741491311!GO:0019001;guanyl nucleotide binding;0.00037187741491311!GO:0005048;signal sequence binding;0.000373631276991495!GO:0006793;phosphorus metabolic process;0.000397418865350328!GO:0006796;phosphate metabolic process;0.000397418865350328!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000402872144225512!GO:0016740;transferase activity;0.000413150451217992!GO:0008250;oligosaccharyl transferase complex;0.000432520408217308!GO:0016126;sterol biosynthetic process;0.000470716388551321!GO:0046474;glycerophospholipid biosynthetic process;0.000485094597315583!GO:0051427;hormone receptor binding;0.000511149130975936!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000550188623985014!GO:0016481;negative regulation of transcription;0.000550188623985014!GO:0005791;rough endoplasmic reticulum;0.000552604238284172!GO:0004576;oligosaccharyl transferase activity;0.000580705003640672!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000698954936806662!GO:0044427;chromosomal part;0.000699504992481116!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000737267549985017!GO:0043623;cellular protein complex assembly;0.000743180408794292!GO:0048522;positive regulation of cellular process;0.000785197802712948!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000798353021277271!GO:0019899;enzyme binding;0.000817129821816573!GO:0005769;early endosome;0.000832498206794238!GO:0051920;peroxiredoxin activity;0.000892677745463787!GO:0035257;nuclear hormone receptor binding;0.000963082755220077!GO:0004177;aminopeptidase activity;0.000984702768450057!GO:0043284;biopolymer biosynthetic process;0.000988576898091985!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000988576898091985!GO:0015002;heme-copper terminal oxidase activity;0.000988576898091985!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000988576898091985!GO:0004129;cytochrome-c oxidase activity;0.000988576898091985!GO:0005885;Arp2/3 protein complex;0.00100308574188886!GO:0046467;membrane lipid biosynthetic process;0.00112847369817926!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00114531821968168!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011470074352537!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011470074352537!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011470074352537!GO:0030027;lamellipodium;0.00118151462936361!GO:0007243;protein kinase cascade;0.00125143207551557!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00125325175911708!GO:0006414;translational elongation;0.00126345763756157!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00132401682168543!GO:0030663;COPI coated vesicle membrane;0.00139341057431828!GO:0030126;COPI vesicle coat;0.00139341057431828!GO:0050657;nucleic acid transport;0.00147341481512058!GO:0051236;establishment of RNA localization;0.00147341481512058!GO:0050658;RNA transport;0.00147341481512058!GO:0016310;phosphorylation;0.00147960036993758!GO:0016044;membrane organization and biogenesis;0.00150913692813343!GO:0050662;coenzyme binding;0.00153932654625843!GO:0019752;carboxylic acid metabolic process;0.0016235118660744!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0016235118660744!GO:0006082;organic acid metabolic process;0.00165888208917353!GO:0030176;integral to endoplasmic reticulum membrane;0.0016825516353332!GO:0018196;peptidyl-asparagine modification;0.0016825516353332!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0016825516353332!GO:0003724;RNA helicase activity;0.00174600779672428!GO:0006403;RNA localization;0.00176495348400737!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00183836944342294!GO:0043681;protein import into mitochondrion;0.00189547550384753!GO:0006979;response to oxidative stress;0.0019096361559354!GO:0016779;nucleotidyltransferase activity;0.00203924992996179!GO:0030137;COPI-coated vesicle;0.00216798033358496!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00223874655226977!GO:0022890;inorganic cation transmembrane transporter activity;0.00224806774892597!GO:0043488;regulation of mRNA stability;0.0023671909888271!GO:0043487;regulation of RNA stability;0.0023671909888271!GO:0051287;NAD binding;0.00240724573046213!GO:0006260;DNA replication;0.00248446575581773!GO:0006695;cholesterol biosynthetic process;0.00248446575581773!GO:0031902;late endosome membrane;0.0024947009966986!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00252106654267068!GO:0015399;primary active transmembrane transporter activity;0.00252106654267068!GO:0008154;actin polymerization and/or depolymerization;0.00252287335109387!GO:0003729;mRNA binding;0.0025610704044061!GO:0030132;clathrin coat of coated pit;0.00256424538284514!GO:0006612;protein targeting to membrane;0.00283491325768548!GO:0030658;transport vesicle membrane;0.00296560031719929!GO:0003899;DNA-directed RNA polymerase activity;0.00300122514921897!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00304947279891391!GO:0051329;interphase of mitotic cell cycle;0.00309508095816901!GO:0006118;electron transport;0.00364111427649392!GO:0031072;heat shock protein binding;0.00393075050378781!GO:0030118;clathrin coat;0.00400628654925789!GO:0051252;regulation of RNA metabolic process;0.00419557537275119!GO:0065009;regulation of a molecular function;0.00420302082252684!GO:0007040;lysosome organization and biogenesis;0.00436738164790138!GO:0051539;4 iron, 4 sulfur cluster binding;0.0044920011259315!GO:0051101;regulation of DNA binding;0.00451147540058474!GO:0016408;C-acyltransferase activity;0.00459590277784816!GO:0045893;positive regulation of transcription, DNA-dependent;0.00473401247681038!GO:0007033;vacuole organization and biogenesis;0.00481828208387537!GO:0045892;negative regulation of transcription, DNA-dependent;0.00491597079983649!GO:0051128;regulation of cellular component organization and biogenesis;0.00506608049616822!GO:0030134;ER to Golgi transport vesicle;0.00526222533615491!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00528394658003572!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00528394658003572!GO:0031323;regulation of cellular metabolic process;0.00538037982740765!GO:0046489;phosphoinositide biosynthetic process;0.00540333015361546!GO:0006733;oxidoreduction coenzyme metabolic process;0.00544587562876532!GO:0051087;chaperone binding;0.00549251660876976!GO:0007010;cytoskeleton organization and biogenesis;0.00557747417887452!GO:0030127;COPII vesicle coat;0.0060351528431711!GO:0012507;ER to Golgi transport vesicle membrane;0.0060351528431711!GO:0006402;mRNA catabolic process;0.00609412876750959!GO:0008092;cytoskeletal protein binding;0.00626732098625968!GO:0001726;ruffle;0.0063268618277762!GO:0006626;protein targeting to mitochondrion;0.00652343769188041!GO:0005869;dynactin complex;0.00671487125385937!GO:0045941;positive regulation of transcription;0.00702069565084857!GO:0030119;AP-type membrane coat adaptor complex;0.00703379217635371!GO:0006650;glycerophospholipid metabolic process;0.00703888711750898!GO:0051325;interphase;0.00707489477027368!GO:0007264;small GTPase mediated signal transduction;0.00710826685679243!GO:0030041;actin filament polymerization;0.0077069155438957!GO:0003690;double-stranded DNA binding;0.00772589725078467!GO:0015992;proton transport;0.00785292602213031!GO:0005813;centrosome;0.00801179847836299!GO:0006595;polyamine metabolic process;0.00801889826021353!GO:0007006;mitochondrial membrane organization and biogenesis;0.00808699568578588!GO:0048500;signal recognition particle;0.00830140346487733!GO:0030660;Golgi-associated vesicle membrane;0.00831277697624684!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00834774786536401!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00834774786536401!GO:0033043;regulation of organelle organization and biogenesis;0.00834774786536401!GO:0000786;nucleosome;0.00846321390609681!GO:0008180;signalosome;0.00862620626923849!GO:0006818;hydrogen transport;0.00873189974134199!GO:0051540;metal cluster binding;0.00873189974134199!GO:0051536;iron-sulfur cluster binding;0.00873189974134199!GO:0007050;cell cycle arrest;0.00873189974134199!GO:0017166;vinculin binding;0.00874595551961205!GO:0006509;membrane protein ectodomain proteolysis;0.00877528972710602!GO:0033619;membrane protein proteolysis;0.00877528972710602!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00897673822641287!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00904313792305356!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00917175911215551!GO:0015630;microtubule cytoskeleton;0.00921050885001476!GO:0048487;beta-tubulin binding;0.00934825039985231!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00940205344811202!GO:0006740;NADPH regeneration;0.0094589393098081!GO:0006098;pentose-phosphate shunt;0.0094589393098081!GO:0048037;cofactor binding;0.00949653436118437!GO:0030880;RNA polymerase complex;0.00951453295451372!GO:0006778;porphyrin metabolic process;0.00955872693756693!GO:0033013;tetrapyrrole metabolic process;0.00955872693756693!GO:0006769;nicotinamide metabolic process;0.0098049313972477!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00982246689469423!GO:0009967;positive regulation of signal transduction;0.00986308855279279!GO:0046483;heterocycle metabolic process;0.00988704345264447!GO:0031124;mRNA 3'-end processing;0.0101610698856765!GO:0045792;negative regulation of cell size;0.0101974758838324!GO:0006352;transcription initiation;0.0103754866026089!GO:0008139;nuclear localization sequence binding;0.0106926343110491!GO:0006350;transcription;0.0109063050494272!GO:0044255;cellular lipid metabolic process;0.0110188612747385!GO:0048471;perinuclear region of cytoplasm;0.0116310038693016!GO:0005774;vacuolar membrane;0.0117226373152877!GO:0030308;negative regulation of cell growth;0.0118827163849865!GO:0040029;regulation of gene expression, epigenetic;0.01190054183213!GO:0051028;mRNA transport;0.0119051042680414!GO:0042802;identical protein binding;0.0120294151725093!GO:0030131;clathrin adaptor complex;0.0121435939229623!GO:0009081;branched chain family amino acid metabolic process;0.0128792112358817!GO:0003746;translation elongation factor activity;0.0128986586166382!GO:0008186;RNA-dependent ATPase activity;0.0132713925123651!GO:0004860;protein kinase inhibitor activity;0.0135948213386812!GO:0048468;cell development;0.0137797809171085!GO:0044438;microbody part;0.0138785464647857!GO:0044439;peroxisomal part;0.0138785464647857!GO:0048518;positive regulation of biological process;0.014035514635208!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0140625729099158!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0144595556992887!GO:0000059;protein import into nucleus, docking;0.0145446575968193!GO:0006891;intra-Golgi vesicle-mediated transport;0.0147958250325547!GO:0031625;ubiquitin protein ligase binding;0.0150671307697411!GO:0043022;ribosome binding;0.0154718697875071!GO:0043492;ATPase activity, coupled to movement of substances;0.0156353427615642!GO:0005815;microtubule organizing center;0.0158345174726401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159235604044869!GO:0006839;mitochondrial transport;0.0161065795078697!GO:0006643;membrane lipid metabolic process;0.0163465485026339!GO:0031529;ruffle organization and biogenesis;0.0168842438117525!GO:0022403;cell cycle phase;0.0169334145828208!GO:0006383;transcription from RNA polymerase III promoter;0.0169801121579475!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0170426205898964!GO:0045047;protein targeting to ER;0.0170426205898964!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0173358518846463!GO:0010468;regulation of gene expression;0.0173808855451735!GO:0006635;fatty acid beta-oxidation;0.0175677913013376!GO:0030521;androgen receptor signaling pathway;0.0175677913013376!GO:0033673;negative regulation of kinase activity;0.0180853529312349!GO:0006469;negative regulation of protein kinase activity;0.0180853529312349!GO:0005581;collagen;0.018355407194642!GO:0051098;regulation of binding;0.0184485495681225!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0184485495681225!GO:0000428;DNA-directed RNA polymerase complex;0.0184485495681225!GO:0019362;pyridine nucleotide metabolic process;0.018535795742544!GO:0042168;heme metabolic process;0.018575634020692!GO:0031903;microbody membrane;0.018575634020692!GO:0005778;peroxisomal membrane;0.018575634020692!GO:0008632;apoptotic program;0.0188324848160135!GO:0031272;regulation of pseudopodium formation;0.0188324848160135!GO:0031269;pseudopodium formation;0.0188324848160135!GO:0031344;regulation of cell projection organization and biogenesis;0.0188324848160135!GO:0031268;pseudopodium organization and biogenesis;0.0188324848160135!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0188324848160135!GO:0031274;positive regulation of pseudopodium formation;0.0188324848160135!GO:0003711;transcription elongation regulator activity;0.0189939354897562!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0190190805827773!GO:0005777;peroxisome;0.0194146862206223!GO:0042579;microbody;0.0194146862206223!GO:0006779;porphyrin biosynthetic process;0.0195144331320699!GO:0033014;tetrapyrrole biosynthetic process;0.0195144331320699!GO:0008312;7S RNA binding;0.0196159145419236!GO:0006892;post-Golgi vesicle-mediated transport;0.0196228254269728!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0199698224907465!GO:0003702;RNA polymerase II transcription factor activity;0.0201753966402926!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0202901271339397!GO:0010257;NADH dehydrogenase complex assembly;0.0202901271339397!GO:0033108;mitochondrial respiratory chain complex assembly;0.0202901271339397!GO:0006401;RNA catabolic process;0.0203172709498399!GO:0006066;alcohol metabolic process;0.0204548594701298!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0204991010536917!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0207267950817016!GO:0050811;GABA receptor binding;0.0207267950817016!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0211214534282319!GO:0016125;sterol metabolic process;0.0213669046511796!GO:0031543;peptidyl-proline dioxygenase activity;0.0218275535968105!GO:0006289;nucleotide-excision repair;0.0221690550824951!GO:0042158;lipoprotein biosynthetic process;0.0221690550824951!GO:0006506;GPI anchor biosynthetic process;0.022557141159218!GO:0006739;NADP metabolic process;0.0225748071059184!GO:0005637;nuclear inner membrane;0.0227538043356305!GO:0008637;apoptotic mitochondrial changes;0.0239617307648166!GO:0016407;acetyltransferase activity;0.0241539295093213!GO:0030659;cytoplasmic vesicle membrane;0.0244656925487319!GO:0031418;L-ascorbic acid binding;0.0245451327624958!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0246644980501362!GO:0004784;superoxide dismutase activity;0.0246644980501362!GO:0051348;negative regulation of transferase activity;0.0246644980501362!GO:0006629;lipid metabolic process;0.0249440463302245!GO:0051059;NF-kappaB binding;0.0249717919300626!GO:0030833;regulation of actin filament polymerization;0.0249849122416375!GO:0035035;histone acetyltransferase binding;0.0252727000493917!GO:0044437;vacuolar part;0.0252727000493917!GO:0005862;muscle thin filament tropomyosin;0.0257147644735693!GO:0000087;M phase of mitotic cell cycle;0.0258297190328093!GO:0005811;lipid particle;0.0258951024592819!GO:0051168;nuclear export;0.0260522524207509!GO:0007067;mitosis;0.0263090582147263!GO:0006644;phospholipid metabolic process;0.0264088318446094!GO:0006505;GPI anchor metabolic process;0.0270991482899389!GO:0045926;negative regulation of growth;0.0271102530874378!GO:0022408;negative regulation of cell-cell adhesion;0.0273878963944022!GO:0005684;U2-dependent spliceosome;0.0274985036205971!GO:0001953;negative regulation of cell-matrix adhesion;0.027561546802805!GO:0005832;chaperonin-containing T-complex;0.0288060037973464!GO:0004004;ATP-dependent RNA helicase activity;0.0288522741678708!GO:0008629;induction of apoptosis by intracellular signals;0.0288721501288336!GO:0030199;collagen fibril organization;0.0292046511942233!GO:0019798;procollagen-proline dioxygenase activity;0.0292131011775725!GO:0030031;cell projection biogenesis;0.029267064301727!GO:0007034;vacuolar transport;0.0292989098598248!GO:0008147;structural constituent of bone;0.0295598790200273!GO:0008286;insulin receptor signaling pathway;0.0296099113622425!GO:0016584;nucleosome positioning;0.0296099113622425!GO:0032507;maintenance of cellular protein localization;0.0298452866734538!GO:0016197;endosome transport;0.0303048977744474!GO:0030125;clathrin vesicle coat;0.030461863011918!GO:0030665;clathrin coated vesicle membrane;0.030461863011918!GO:0045936;negative regulation of phosphate metabolic process;0.0306443905940147!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0314082483243639!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0314082483243639!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0319345673745014!GO:0030832;regulation of actin filament length;0.0322796071012679!GO:0035258;steroid hormone receptor binding;0.0322948358895608!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0325777066064786!GO:0000209;protein polyubiquitination;0.0326939532054729!GO:0006497;protein amino acid lipidation;0.0328797911086083!GO:0051235;maintenance of localization;0.0330930874486562!GO:0005765;lysosomal membrane;0.0332306762016523!GO:0045045;secretory pathway;0.0332441294369821!GO:0000339;RNA cap binding;0.0332568767940902!GO:0032535;regulation of cellular component size;0.033613496765368!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.034455593913337!GO:0000049;tRNA binding;0.0350706979489065!GO:0006417;regulation of translation;0.035280231509765!GO:0005100;Rho GTPase activator activity;0.0353754363748888!GO:0043433;negative regulation of transcription factor activity;0.0355261114605813!GO:0000082;G1/S transition of mitotic cell cycle;0.03613624186261!GO:0033559;unsaturated fatty acid metabolic process;0.0362812665397308!GO:0006636;unsaturated fatty acid biosynthetic process;0.0362812665397308!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0363705702772396!GO:0006897;endocytosis;0.0372644762328647!GO:0010324;membrane invagination;0.0372644762328647!GO:0006783;heme biosynthetic process;0.0373969269721025!GO:0009116;nucleoside metabolic process;0.0375559552768754!GO:0000096;sulfur amino acid metabolic process;0.0375559552768754!GO:0009303;rRNA transcription;0.0379689153092804!GO:0016363;nuclear matrix;0.0395813979768285!GO:0030032;lamellipodium biogenesis;0.039698826054964!GO:0015631;tubulin binding;0.0398018744347896!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0403313819028755!GO:0046813;virion attachment, binding of host cell surface receptor;0.0403313819028755!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0403313819028755!GO:0006354;RNA elongation;0.040367886768016!GO:0016860;intramolecular oxidoreductase activity;0.0403787768352336!GO:0043414;biopolymer methylation;0.0403787768352336!GO:0005520;insulin-like growth factor binding;0.0411127704108584!GO:0045185;maintenance of protein localization;0.0414904980042881!GO:0030384;phosphoinositide metabolic process;0.041659123250838!GO:0006790;sulfur metabolic process;0.041659123250838!GO:0000030;mannosyltransferase activity;0.0418763101556244!GO:0031301;integral to organelle membrane;0.0426020517385072!GO:0030145;manganese ion binding;0.0426430646803105!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0426682611993416!GO:0030518;steroid hormone receptor signaling pathway;0.0432055584248756!GO:0000118;histone deacetylase complex;0.0436573475443928!GO:0003923;GPI-anchor transamidase activity;0.0438096497681238!GO:0016255;attachment of GPI anchor to protein;0.0438096497681238!GO:0042765;GPI-anchor transamidase complex;0.0438096497681238!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0438469322550011!GO:0045930;negative regulation of progression through mitotic cell cycle;0.0438539780968447!GO:0017134;fibroblast growth factor binding;0.044200377300502!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0444063490057937!GO:0003756;protein disulfide isomerase activity;0.0445170978481255!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0445170978481255!GO:0046426;negative regulation of JAK-STAT cascade;0.0450610042012246!GO:0046822;regulation of nucleocytoplasmic transport;0.045603452313092!GO:0005586;collagen type III;0.0460992031857599!GO:0006376;mRNA splice site selection;0.0461708708885748!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0461708708885748!GO:0031901;early endosome membrane;0.047561214083025!GO:0031123;RNA 3'-end processing;0.0480086781565414!GO:0005583;fibrillar collagen;0.0484523341681668!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0486570312997465!GO:0005975;carbohydrate metabolic process;0.0487966707684331!GO:0032906;transforming growth factor-beta2 production;0.0491740345901759!GO:0032909;regulation of transforming growth factor-beta2 production;0.0491740345901759!GO:0044433;cytoplasmic vesicle part;0.04987882535004 | |||
|sample_id=11409 | |sample_id=11409 | ||
|sample_note= | |sample_note= |
Revision as of 20:04, 25 June 2012
Name: | Nucleus Pulposus Cell, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12019
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12019
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.549 |
10 | 10 | 0.54 |
100 | 100 | 0.973 |
101 | 101 | 0.612 |
102 | 102 | 0.371 |
103 | 103 | 0.125 |
104 | 104 | 0.604 |
105 | 105 | 0.719 |
106 | 106 | 0.056 |
107 | 107 | 0.0197 |
108 | 108 | 0.36 |
109 | 109 | 0.646 |
11 | 11 | 0.152 |
110 | 110 | 0.374 |
111 | 111 | 0.95 |
112 | 112 | 0.588 |
113 | 113 | 0.149 |
114 | 114 | 0.379 |
115 | 115 | 0.131 |
116 | 116 | 0.0272 |
117 | 117 | 0.547 |
118 | 118 | 0.818 |
119 | 119 | 0.62 |
12 | 12 | 0.201 |
120 | 120 | 0.0279 |
121 | 121 | 0.168 |
122 | 122 | 0.0893 |
123 | 123 | 0.00254 |
124 | 124 | 0.521 |
125 | 125 | 0.679 |
126 | 126 | 0.499 |
127 | 127 | 0.456 |
128 | 128 | 0.0118 |
129 | 129 | 0.168 |
13 | 13 | 0.683 |
130 | 130 | 0.577 |
131 | 131 | 0.239 |
132 | 132 | 0.158 |
133 | 133 | 0.381 |
134 | 134 | 0.776 |
135 | 135 | 0.563 |
136 | 136 | 0.859 |
137 | 137 | 0.0326 |
138 | 138 | 0.438 |
139 | 139 | 0.243 |
14 | 14 | 0.856 |
140 | 140 | 0.554 |
141 | 141 | 0.354 |
142 | 142 | 0.692 |
143 | 143 | 0.468 |
144 | 144 | 0.389 |
145 | 145 | 0.435 |
146 | 146 | 0.29 |
147 | 147 | 0.469 |
148 | 148 | 0.158 |
149 | 149 | 0.0173 |
15 | 15 | 0.76 |
150 | 150 | 0.611 |
151 | 151 | 0.33 |
152 | 152 | 0.233 |
153 | 153 | 0.855 |
154 | 154 | 0.299 |
155 | 155 | 0.161 |
156 | 156 | 0.319 |
157 | 157 | 0.945 |
158 | 158 | 0.137 |
159 | 159 | 0.834 |
16 | 16 | 0.0348 |
160 | 160 | 0.0813 |
161 | 161 | 0.201 |
162 | 162 | 0.0087 |
163 | 163 | 0.653 |
164 | 164 | 0.441 |
165 | 165 | 0.93 |
166 | 166 | 0.174 |
167 | 167 | 0.414 |
168 | 168 | 0.852 |
169 | 169 | 0.0395 |
17 | 17 | 0.473 |
18 | 18 | 0.351 |
19 | 19 | 0.0269 |
2 | 2 | 0.14 |
20 | 20 | 0.448 |
21 | 21 | 0.526 |
22 | 22 | 0.0695 |
23 | 23 | 0.22 |
24 | 24 | 0.63 |
25 | 25 | 0.675 |
26 | 26 | 0.302 |
27 | 27 | 0.125 |
28 | 28 | 0.137 |
29 | 29 | 0.264 |
3 | 3 | 0.16 |
30 | 30 | 0.215 |
31 | 31 | 0.264 |
32 | 32 | 2.10357e-10 |
33 | 33 | 0.846 |
34 | 34 | 0.32 |
35 | 35 | 0.516 |
36 | 36 | 0.337 |
37 | 37 | 0.0787 |
38 | 38 | 0.858 |
39 | 39 | 0.273 |
4 | 4 | 0.152 |
40 | 40 | 0.579 |
41 | 41 | 0.0981 |
42 | 42 | 0.851 |
43 | 43 | 0.255 |
44 | 44 | 0.0339 |
45 | 45 | 0.245 |
46 | 46 | 0.0552 |
47 | 47 | 0.493 |
48 | 48 | 0.607 |
49 | 49 | 0.384 |
5 | 5 | 0.648 |
50 | 50 | 0.507 |
51 | 51 | 0.343 |
52 | 52 | 0.448 |
53 | 53 | 0.432 |
54 | 54 | 0.261 |
55 | 55 | 0.473 |
56 | 56 | 0.307 |
57 | 57 | 0.549 |
58 | 58 | 0.996 |
59 | 59 | 0.00377 |
6 | 6 | 0.522 |
60 | 60 | 0.496 |
61 | 61 | 0.746 |
62 | 62 | 0.559 |
63 | 63 | 0.326 |
64 | 64 | 0.499 |
65 | 65 | 0.0887 |
66 | 66 | 0.367 |
67 | 67 | 0.914 |
68 | 68 | 0.2 |
69 | 69 | 0.00558 |
7 | 7 | 0.765 |
70 | 70 | 0.243 |
71 | 71 | 0.174 |
72 | 72 | 0.795 |
73 | 73 | 0.0805 |
74 | 74 | 0.542 |
75 | 75 | 0.431 |
76 | 76 | 0.451 |
77 | 77 | 0.089 |
78 | 78 | 0.801 |
79 | 79 | 0.0122 |
8 | 8 | 0.0619 |
80 | 80 | 0.243 |
81 | 81 | 0.557 |
82 | 82 | 0.0168 |
83 | 83 | 0.807 |
84 | 84 | 0.448 |
85 | 85 | 0.11 |
86 | 86 | 0.775 |
87 | 87 | 0.853 |
88 | 88 | 0.222 |
89 | 89 | 0.0744 |
9 | 9 | 0.246 |
90 | 90 | 0.31 |
91 | 91 | 0.168 |
92 | 92 | 0.0969 |
93 | 93 | 0.675 |
94 | 94 | 0.707 |
95 | 95 | 0.408 |
96 | 96 | 0.5 |
97 | 97 | 0.568 |
98 | 98 | 0.704 |
99 | 99 | 3.57099e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12019
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000123 human nucleus pulposus cell of intervertebral disc sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002384 (connective tissue)
0000926 (mesoderm)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0002242 (nucleus pulposus)
0003068 (axial mesoderm)
0006603 (presumptive mesoderm)
0002328 (notochord)
0004880 (chordamesoderm)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA