FFCP PHASE1:Hg19::chr6:31846768..31846780,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80736|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13941|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000229729,ENST00000462671,ENST00000465707_5end|coexpression_cluster_id=C1339|description=CAGE_peak_1_at_SLC44A4_5end|id=chr6:31846768..31846780,-|ontology_enrichment_celltype=CL:0002368!2.36e-12!13;CL:1000507!1.01e-10!12;CL:1000494!1.01e-10!12;CL:1000449!3.05e-09!16;CL:0002202!1.46e-08!9;CL:0002632!1.46e-08!9;CL:1000497!6.87e-08!18;CL:0002518!6.87e-08!18;CL:0002076!6.03e-07!43;CL:0000223!8.84e-07!59|ontology_enrichment_celltype_v019=CL:1000507;1.06e-12;10!CL:1000494;1.06e-12;10!CL:1000449;3.42e-10;15!CL:0002368;3.76e-10;13!CL:1000497;9.26e-09;17!CL:0002518;9.26e-09;17!CL:0000244;1.39e-07;4!CL:0000731;1.39e-07;4!CL:0000239;2.88e-07;3!CL:1000615;2.88e-07;3!CL:0002306;2.88e-07;3!CL:0002202;3.73e-07;9!CL:0002632;3.73e-07;9|ontology_enrichment_celltype_v019_2=CL:1000507,1.12e-12,10;CL:1000494,1.12e-12,10;CL:1000449,3.57e-10,15;CL:0002368,3.72e-10,13;CL:1000497,9.59e-09,17;CL:0002518,9.59e-09,17;CL:0000244,1.10e-07,4;CL:0000731,1.10e-07,4;CL:0000239,3.01e-07,3;CL:1000615,3.01e-07,3;CL:0002306,3.01e-07,3;CL:0002202,3.39e-07,9;CL:0002632,3.39e-07,9|ontology_enrichment_development_v019=UBERON:0006595;7.60e-07;86|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!4.33e-22!169;UBERON:0000925!4.33e-22!169;UBERON:0006595!4.33e-22!169;UBERON:0004921!9.32e-20!129;UBERON:0004185!9.32e-20!129;UBERON:0000466!2.83e-18!126;UBERON:0001007!1.42e-17!155;UBERON:0001555!1.42e-17!155;UBERON:0007026!1.42e-17!155;UBERON:0007023!1.07e-15!115;UBERON:0000077!2.46e-15!130;UBERON:0000464!3.02e-15!104;UBERON:0005177!3.77e-15!107;UBERON:0001008!6.97e-15!45;UBERON:0000058!1.22e-14!26;UBERON:0006554!5.41e-14!44;UBERON:0009569!1.04e-12!113;UBERON:0005911!1.11e-12!82;UBERON:0003064!5.96e-12!37;UBERON:0004876!8.96e-12!20;UBERON:0000080!1.79e-11!18;UBERON:0002120!1.79e-11!18;UBERON:0004875!1.79e-11!18;UBERON:0005721!1.79e-11!18;UBERON:0005754!1.79e-11!18;UBERON:0007297!1.79e-11!18;UBERON:0001041!9.49e-11!98;UBERON:0009773!1.01e-10!12;UBERON:0001231!1.01e-10!12;UBERON:0004810!1.01e-10!12;UBERON:0003887!1.38e-10!21;UBERON:0006555!2.53e-10!17;UBERON:0005103!2.53e-10!17;UBERON:0000083!2.53e-10!17;UBERON:0009201!2.53e-10!17;UBERON:0004819!2.53e-10!17;UBERON:0006553!2.53e-10!17;UBERON:0003074!2.53e-10!17;UBERON:0003060!2.53e-10!17;UBERON:0005172!6.02e-10!55;UBERON:0005173!6.02e-10!55;UBERON:0000489!2.35e-09!32;UBERON:0000065!2.43e-09!53;UBERON:0004211!3.05e-09!16;UBERON:0001285!3.05e-09!16;UBERON:0007684!3.05e-09!16;UBERON:0003220!3.05e-09!16;UBERON:0004208!3.05e-09!16;UBERON:0002113!3.53e-09!27;UBERON:0003918!3.53e-09!27;UBERON:0005095!3.53e-09!27;UBERON:0007687!3.53e-09!27;UBERON:0000481!5.56e-09!347;UBERON:0003104!6.20e-09!238;UBERON:0009142!6.20e-09!238;UBERON:0005178!1.12e-08!34;UBERON:0002224!1.12e-08!34;UBERON:0000922!1.91e-08!612;UBERON:0007196!2.71e-08!14;UBERON:0001558!2.71e-08!14;UBERON:0005181!2.73e-08!35;UBERON:0002417!2.86e-08!61;UBERON:0000916!2.86e-08!61;UBERON:0002553!4.94e-08!70;UBERON:0001004!5.88e-08!72;UBERON:0000062!8.07e-08!511;UBERON:0000468!1.37e-07!659;UBERON:0002294!2.09e-07!7;UBERON:0001173!2.09e-07!7;UBERON:0004912!2.09e-07!7;UBERON:0004111!2.72e-07!241;UBERON:0003886!3.90e-07!63|ontology_enrichment_uberon_v019=UBERON:0006554;6.05e-14;30!UBERON:0001008;6.05e-14;30!UBERON:0005409;8.64e-14;22!UBERON:0000160;3.45e-13;17!UBERON:0004921;5.04e-13;33!UBERON:0004211;1.06e-12;10!UBERON:0009773;1.06e-12;10!UBERON:0001231;1.06e-12;10!UBERON:0004810;1.06e-12;10!UBERON:0006555;3.42e-10;15!UBERON:0004819;3.42e-10;15!UBERON:0001285;3.42e-10;15!UBERON:0007684;3.42e-10;15!UBERON:0000058;1.09e-09;10!UBERON:0002113;9.16e-09;24!UBERON:0011143;9.16e-09;24!UBERON:0000489;3.38e-08;29!UBERON:0002108;7.35e-08;4!UBERON:0002294;1.49e-07;7!UBERON:0001173;1.49e-07;7!UBERON:0007196;2.45e-07;15!UBERON:0001558;2.45e-07;15!UBERON:0006853;2.88e-07;3!UBERON:0007685;2.88e-07;3!UBERON:0004134;2.88e-07;3!UBERON:0006947;3.27e-07;3!UBERON:0004054;3.27e-07;3!UBERON:0000059;4.78e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.48e-20,160;UBERON:0000925,7.48e-20,160;UBERON:0006595,7.48e-20,160;UBERON:0004921,7.12e-19,118;UBERON:0001008,5.96e-18,48;UBERON:0006554,9.00e-17,47;UBERON:0001007,3.44e-15,145;UBERON:0001555,3.44e-15,145;UBERON:0007026,3.44e-15,145;UBERON:0000160,3.36e-13,17;UBERON:0004810,1.12e-12,10;UBERON:0005177,3.15e-12,101;UBERON:0005409,8.48e-12,25;UBERON:0006555,1.21e-11,16;UBERON:0004819,1.21e-11,16;UBERON:0002113,3.07e-11,26;UBERON:0003918,3.07e-11,26;UBERON:0011143,3.07e-11,26;UBERON:0005095,3.07e-11,26;UBERON:0007687,3.07e-11,26;UBERON:0007023,5.22e-11,114;UBERON:0000489,1.92e-10,31;UBERON:0004211,3.57e-10,15;UBERON:0009773,3.57e-10,15;UBERON:0001231,3.57e-10,15;UBERON:0001285,3.57e-10,15;UBERON:0007684,3.57e-10,15;UBERON:0004208,3.57e-10,15;UBERON:0009569,2.68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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80736 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13941 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000229729,ENST00000462671,ENST00000465707_5end | |||
|coexpression_cluster_id=C1339 | |||
|description=CAGE_peak_1_at_SLC44A4_5end | |||
|id=chr6:31846768..31846780,- | |||
|ontology_enrichment_celltype=CL:0002368!2.36e-12!13;CL:1000507!1.01e-10!12;CL:1000494!1.01e-10!12;CL:1000449!3.05e-09!16;CL:0002202!1.46e-08!9;CL:0002632!1.46e-08!9;CL:1000497!6.87e-08!18;CL:0002518!6.87e-08!18;CL:0002076!6.03e-07!43;CL:0000223!8.84e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.06e-12;10!CL:1000494;1.06e-12;10!CL:1000449;3.42e-10;15!CL:0002368;3.76e-10;13!CL:1000497;9.26e-09;17!CL:0002518;9.26e-09;17!CL:0000244;1.39e-07;4!CL:0000731;1.39e-07;4!CL:0000239;2.88e-07;3!CL:1000615;2.88e-07;3!CL:0002306;2.88e-07;3!CL:0002202;3.73e-07;9!CL:0002632;3.73e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.12e-12,10;CL:1000494,1.12e-12,10;CL:1000449,3.57e-10,15;CL:0002368,3.72e-10,13;CL:1000497,9.59e-09,17;CL:0002518,9.59e-09,17;CL:0000244,1.10e-07,4;CL:0000731,1.10e-07,4;CL:0000239,3.01e-07,3;CL:1000615,3.01e-07,3;CL:0002306,3.01e-07,3;CL:0002202,3.39e-07,9;CL:0002632,3.39e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0006595;7.60e-07;86 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0006554;6.05e-14;30!UBERON:0001008;6.05e-14;30!UBERON:0005409;8.64e-14;22!UBERON:0000160;3.45e-13;17!UBERON:0004921;5.04e-13;33!UBERON:0004211;1.06e-12;10!UBERON:0009773;1.06e-12;10!UBERON:0001231;1.06e-12;10!UBERON:0004810;1.06e-12;10!UBERON:0006555;3.42e-10;15!UBERON:0004819;3.42e-10;15!UBERON:0001285;3.42e-10;15!UBERON:0007684;3.42e-10;15!UBERON:0000058;1.09e-09;10!UBERON:0002113;9.16e-09;24!UBERON:0011143;9.16e-09;24!UBERON:0000489;3.38e-08;29!UBERON:0002108;7.35e-08;4!UBERON:0002294;1.49e-07;7!UBERON:0001173;1.49e-07;7!UBERON:0007196;2.45e-07;15!UBERON:0001558;2.45e-07;15!UBERON:0006853;2.88e-07;3!UBERON:0007685;2.88e-07;3!UBERON:0004134;2.88e-07;3!UBERON:0006947;3.27e-07;3!UBERON:0004054;3.27e-07;3!UBERON:0000059;4.78e-07;11 | |||
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|short_description=p1@SLC44A4 | |||
}} |
Revision as of 20:18, 13 September 2013
Short description: | p1@SLC44A4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SLC44A4_5end |
Coexpression cluster: | C1339_small_colon_signet_trachea_gall_adenocarcinoma_Renal |
Association with transcript: | 0bp_to_ENST00000229729, ENST00000462671, ENST00000465707_5end |
EntrezGene: | SLC44A4 |
HGNC: | 13941 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.12e-12 | 10 |
nephron tubule epithelial cell | 1.12e-12 | 10 |
epithelial cell of nephron | 3.57e-10 | 15 |
respiratory epithelial cell | 3.72e-10 | 13 |
kidney cell | 9.59e-09 | 17 |
kidney epithelial cell | 9.59e-09 | 17 |
transitional epithelial cell | 1.10e-07 | 4 |
urothelial cell | 1.10e-07 | 4 |
brush border epithelial cell | 3.01e-07 | 3 |
kidney cortex tubule cell | 3.01e-07 | 3 |
epithelial cell of proximal tubule | 3.01e-07 | 3 |
epithelial cell of tracheobronchial tree | 3.39e-07 | 9 |
epithelial cell of lower respiratory tract | 3.39e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.