FFCP PHASE1:Hg19::chr2:176969097..176969109,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3237|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5134|TSSclassifier=S|UniProt=|association_with_transcript=-140bp_to_uc010fqx.2_5end|coexpression_cluster_id=C4148|description=CAGE_peak_3_at_HOXD11_5end|id=chr2:176969097..176969109,+|ontology_enrichment_celltype=CL:1000497!8.96e-14!18;CL:0002518!8.96e-14!18;CL:0002620!3.85e-13!23;CL:1000449!6.28e-12!16;CL:1000507!6.32e-12!12;CL:1000494!6.32e-12!12;CL:0002681!8.14e-09!13;CL:0002584!8.14e-09!13|ontology_enrichment_celltype_v019=CL:1000507;1.82e-16;10!CL:1000494;1.82e-16;10!CL:1000497;4.06e-16;17!CL:0002518;4.06e-16;17!CL:1000449;1.44e-15;15!CL:0002620;8.35e-14;23!CL:0002681;1.16e-10;12!CL:0002584;1.16e-10;12!CL:0000239;6.38e-07;3!CL:1000615;6.38e-07;3!CL:0002306;6.38e-07;3|ontology_enrichment_celltype_v019_2=CL:1000507,2.10e-16,10;CL:1000494,2.10e-16,10;CL:1000497,3.90e-16,17;CL:0002518,3.90e-16,17;CL:1000449,1.46e-15,15;CL:0002620,1.03e-13,23;CL:0002681,1.13e-10,12;CL:0002584,1.13e-10,12;CL:0000239,6.52e-07,3;CL:1000615,6.52e-07,3;CL:0002306,6.52e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!1.35e-08!143;DOID:1749!3.12e-08!14;DOID:17!7.92e-08!5;DOID:450!7.92e-08!5;DOID:66!7.92e-08!5;DOID:423!7.92e-08!5;DOID:0080000!7.92e-08!5;DOID:11722!7.92e-08!5|ontology_enrichment_disease_v019=DOID:1749;2.42e-13;14!DOID:17;8.74e-12;5!DOID:450;8.74e-12;5!DOID:66;8.74e-12;5!DOID:423;8.74e-12;5!DOID:0080000;8.74e-12;5!DOID:11722;8.74e-12;5!DOID:171;1.56e-08;10!DOID:3093;4.65e-08;11|ontology_enrichment_disease_v019_2=DOID:1749,2.56e-13,14;DOID:17,9.78e-12,5;DOID:450,9.78e-12,5;DOID:66,9.78e-12,5;DOID:423,9.78e-12,5;DOID:0080000,9.78e-12,5;DOID:11722,9.78e-12,5;DOID:171,1.56e-08,10;DOID:3093,3.91e-08,11|ontology_enrichment_uberon=UBERON:0006554!5.36e-22!44;UBERON:0001008!2.89e-21!45;UBERON:0002113!5.99e-17!27;UBERON:0003918!5.99e-17!27;UBERON:0005095!5.99e-17!27;UBERON:0007687!5.99e-17!27;UBERON:0000489!1.56e-16!32;UBERON:0003064!2.35e-15!37;UBERON:0004876!9.09e-14!20;UBERON:0000080!1.05e-13!18;UBERON:0002120!1.05e-13!18;UBERON:0004875!1.05e-13!18;UBERON:0005721!1.05e-13!18;UBERON:0005754!1.05e-13!18;UBERON:0007297!1.05e-13!18;UBERON:0006555!1.13e-12!17;UBERON:0005103!1.13e-12!17;UBERON:0000083!1.13e-12!17;UBERON:0009201!1.13e-12!17;UBERON:0004819!1.13e-12!17;UBERON:0006553!1.13e-12!17;UBERON:0003074!1.13e-12!17;UBERON:0003060!1.13e-12!17;UBERON:0004211!6.28e-12!16;UBERON:0001285!6.28e-12!16;UBERON:0007684!6.28e-12!16;UBERON:0003220!6.28e-12!16;UBERON:0004208!6.28e-12!16;UBERON:0009773!6.32e-12!12;UBERON:0001231!6.32e-12!12;UBERON:0004810!6.32e-12!12;UBERON:0003887!4.37e-11!21;UBERON:0003886!2.15e-09!63;UBERON:0000058!3.10e-09!26;UBERON:0001225!8.14e-09!13;UBERON:0008987!8.14e-09!13;UBERON:0005172!8.42e-09!55;UBERON:0005173!8.42e-09!55;UBERON:0001851!5.97e-08!16;UBERON:0002553!1.17e-07!70;UBERON:0000059!2.10e-07!11;UBERON:0001155!2.12e-07!9;UBERON:0002417!3.02e-07!61;UBERON:0000916!3.02e-07!61;UBERON:0002097!3.42e-07!40;UBERON:0005156!9.11e-07!59;UBERON:0000990!9.11e-07!59|ontology_enrichment_uberon_v019=UBERON:0006554;1.52e-21;30!UBERON:0001008;1.52e-21;30!UBERON:0000489;7.47e-18;29!UBERON:0002113;2.74e-17;24!UBERON:0011143;2.74e-17;24!UBERON:0004211;1.82e-16;10!UBERON:0009773;1.82e-16;10!UBERON:0001231;1.82e-16;10!UBERON:0004810;1.82e-16;10!UBERON:0006555;1.44e-15;15!UBERON:0004819;1.44e-15;15!UBERON:0001285;1.44e-15;15!UBERON:0007684;1.44e-15;15!UBERON:0001225;1.16e-10;12!UBERON:0008987;1.16e-10;12!UBERON:0001851;3.20e-08;15!UBERON:0000353;3.20e-08;15!UBERON:0002050;3.93e-08;5!UBERON:0005423;3.93e-08;5!UBERON:0006853;6.38e-07;3!UBERON:0007685;6.38e-07;3!UBERON:0004134;6.38e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.77e-18,31;UBERON:0006554,3.52e-18,47;UBERON:0002113,6.76e-18,26;UBERON:0003918,6.76e-18,26;UBERON:0011143,6.76e-18,26;UBERON:0005095,6.76e-18,26;UBERON:0007687,6.76e-18,26;UBERON:0001008,1.15e-17,48;UBERON:0004810,2.10e-16,10;UBERON:0004211,1.46e-15,15;UBERON:0009773,1.46e-15,15;UBERON:0001231,1.46e-15,15;UBERON:0001285,1.46e-15,15;UBERON:0007684,1.46e-15,15;UBERON:0004208,1.46e-15,15;UBERON:0006555,2.01e-14,16;UBERON:0004819,2.01e-14,16;UBERON:0001225,1.13e-10,12;UBERON:0008987,1.13e-10,12;UBERON:0001851,3.13e-08,15;UBERON:0000353,3.13e-08,15;UBERON:0002097,1.72e-07,41;UBERON:0005172,2.07e-07,54;UBERON:0005173,2.07e-07,54;UBERON:0003064,4.51e-07,28;UBERON:0006853,6.52e-07,3;UBERON:0007685,6.52e-07,3;UBERON:0004134,6.52e-07,3;UBERON:0003103,8.32e-07,68;UBERON:0004876,8.67e-07,11|phase1_expression=0.363356758541113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0.795285947051099,0.486634870302636,0,0,0,1.11332214173056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3237 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-140bp_to_uc010fqx.2_5end | |||
|coexpression_cluster_id=C4148 | |||
|description=CAGE_peak_3_at_HOXD11_5end | |||
|id=chr2:176969097..176969109,+ | |||
|ontology_enrichment_celltype=CL:1000497!8.96e-14!18;CL:0002518!8.96e-14!18;CL:0002620!3.85e-13!23;CL:1000449!6.28e-12!16;CL:1000507!6.32e-12!12;CL:1000494!6.32e-12!12;CL:0002681!8.14e-09!13;CL:0002584!8.14e-09!13 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.82e-16;10!CL:1000494;1.82e-16;10!CL:1000497;4.06e-16;17!CL:0002518;4.06e-16;17!CL:1000449;1.44e-15;15!CL:0002620;8.35e-14;23!CL:0002681;1.16e-10;12!CL:0002584;1.16e-10;12!CL:0000239;6.38e-07;3!CL:1000615;6.38e-07;3!CL:0002306;6.38e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.10e-16,10;CL:1000494,2.10e-16,10;CL:1000497,3.90e-16,17;CL:0002518,3.90e-16,17;CL:1000449,1.46e-15,15;CL:0002620,1.03e-13,23;CL:0002681,1.13e-10,12;CL:0002584,1.13e-10,12;CL:0000239,6.52e-07,3;CL:1000615,6.52e-07,3;CL:0002306,6.52e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.35e-08!143;DOID:1749!3.12e-08!14;DOID:17!7.92e-08!5;DOID:450!7.92e-08!5;DOID:66!7.92e-08!5;DOID:423!7.92e-08!5;DOID:0080000!7.92e-08!5;DOID:11722!7.92e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.42e-13;14!DOID:17;8.74e-12;5!DOID:450;8.74e-12;5!DOID:66;8.74e-12;5!DOID:423;8.74e-12;5!DOID:0080000;8.74e-12;5!DOID:11722;8.74e-12;5!DOID:171;1.56e-08;10!DOID:3093;4.65e-08;11 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.56e-13,14;DOID:17,9.78e-12,5;DOID:450,9.78e-12,5;DOID:66,9.78e-12,5;DOID:423,9.78e-12,5;DOID:0080000,9.78e-12,5;DOID:11722,9.78e-12,5;DOID:171,1.56e-08,10;DOID:3093,3.91e-08,11 | |||
|ontology_enrichment_uberon=UBERON:0006554!5.36e-22!44;UBERON:0001008!2.89e-21!45;UBERON:0002113!5.99e-17!27;UBERON:0003918!5.99e-17!27;UBERON:0005095!5.99e-17!27;UBERON:0007687!5.99e-17!27;UBERON:0000489!1.56e-16!32;UBERON:0003064!2.35e-15!37;UBERON:0004876!9.09e-14!20;UBERON:0000080!1.05e-13!18;UBERON:0002120!1.05e-13!18;UBERON:0004875!1.05e-13!18;UBERON:0005721!1.05e-13!18;UBERON:0005754!1.05e-13!18;UBERON:0007297!1.05e-13!18;UBERON:0006555!1.13e-12!17;UBERON:0005103!1.13e-12!17;UBERON:0000083!1.13e-12!17;UBERON:0009201!1.13e-12!17;UBERON:0004819!1.13e-12!17;UBERON:0006553!1.13e-12!17;UBERON:0003074!1.13e-12!17;UBERON:0003060!1.13e-12!17;UBERON:0004211!6.28e-12!16;UBERON:0001285!6.28e-12!16;UBERON:0007684!6.28e-12!16;UBERON:0003220!6.28e-12!16;UBERON:0004208!6.28e-12!16;UBERON:0009773!6.32e-12!12;UBERON:0001231!6.32e-12!12;UBERON:0004810!6.32e-12!12;UBERON:0003887!4.37e-11!21;UBERON:0003886!2.15e-09!63;UBERON:0000058!3.10e-09!26;UBERON:0001225!8.14e-09!13;UBERON:0008987!8.14e-09!13;UBERON:0005172!8.42e-09!55;UBERON:0005173!8.42e-09!55;UBERON:0001851!5.97e-08!16;UBERON:0002553!1.17e-07!70;UBERON:0000059!2.10e-07!11;UBERON:0001155!2.12e-07!9;UBERON:0002417!3.02e-07!61;UBERON:0000916!3.02e-07!61;UBERON:0002097!3.42e-07!40;UBERON:0005156!9.11e-07!59;UBERON:0000990!9.11e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.52e-21;30!UBERON:0001008;1.52e-21;30!UBERON:0000489;7.47e-18;29!UBERON:0002113;2.74e-17;24!UBERON:0011143;2.74e-17;24!UBERON:0004211;1.82e-16;10!UBERON:0009773;1.82e-16;10!UBERON:0001231;1.82e-16;10!UBERON:0004810;1.82e-16;10!UBERON:0006555;1.44e-15;15!UBERON:0004819;1.44e-15;15!UBERON:0001285;1.44e-15;15!UBERON:0007684;1.44e-15;15!UBERON:0001225;1.16e-10;12!UBERON:0008987;1.16e-10;12!UBERON:0001851;3.20e-08;15!UBERON:0000353;3.20e-08;15!UBERON:0002050;3.93e-08;5!UBERON:0005423;3.93e-08;5!UBERON:0006853;6.38e-07;3!UBERON:0007685;6.38e-07;3!UBERON:0004134;6.38e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,1.77e-18,31;UBERON:0006554,3.52e-18,47;UBERON:0002113,6.76e-18,26;UBERON:0003918,6.76e-18,26;UBERON:0011143,6.76e-18,26;UBERON:0005095,6.76e-18,26;UBERON:0007687,6.76e-18,26;UBERON:0001008,1.15e-17,48;UBERON:0004810,2.10e-16,10;UBERON:0004211,1.46e-15,15;UBERON:0009773,1.46e-15,15;UBERON:0001231,1.46e-15,15;UBERON:0001285,1.46e-15,15;UBERON:0007684,1.46e-15,15;UBERON:0004208,1.46e-15,15;UBERON:0006555,2.01e-14,16;UBERON:0004819,2.01e-14,16;UBERON:0001225,1.13e-10,12;UBERON:0008987,1.13e-10,12;UBERON:0001851,3.13e-08,15;UBERON:0000353,3.13e-08,15;UBERON:0002097,1.72e-07,41;UBERON:0005172,2.07e-07,54;UBERON:0005173,2.07e-07,54;UBERON:0003064,4.51e-07,28;UBERON:0006853,6.52e-07,3;UBERON:0007685,6.52e-07,3;UBERON:0004134,6.52e-07,3;UBERON:0003103,8.32e-07,68;UBERON:0004876,8.67e-07,11 | |||
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|short_description=p3@HOXD11 | |||
}} |
Revision as of 14:49, 12 September 2013
Short description: | p3@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_HOXD11_5end |
Coexpression cluster: | C4148_neuroectodermal_Fibroblast_neuroblastoma_glioblastoma_tridermal_rhabdomyosarcoma_kidney |
Association with transcript: | -140bp_to_uc010fqx.2_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.10e-16 | 10 |
nephron tubule epithelial cell | 2.10e-16 | 10 |
kidney cell | 3.90e-16 | 17 |
kidney epithelial cell | 3.90e-16 | 17 |
epithelial cell of nephron | 1.46e-15 | 15 |
skin fibroblast | 1.03e-13 | 23 |
kidney cortical cell | 1.13e-10 | 12 |
renal cortical epithelial cell | 1.13e-10 | 12 |
brush border epithelial cell | 6.52e-07 | 3 |
kidney cortex tubule cell | 6.52e-07 | 3 |
epithelial cell of proximal tubule | 6.52e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 1.77e-18 | 31 |
urinary system structure | 3.52e-18 | 47 |
kidney | 6.76e-18 | 26 |
kidney mesenchyme | 6.76e-18 | 26 |
upper urinary tract | 6.76e-18 | 26 |
kidney rudiment | 6.76e-18 | 26 |
kidney field | 6.76e-18 | 26 |
renal system | 1.15e-17 | 48 |
nephron tubule epithelium | 2.10e-16 | 10 |
nephron epithelium | 1.46e-15 | 15 |
renal tubule | 1.46e-15 | 15 |
nephron tubule | 1.46e-15 | 15 |
nephron | 1.46e-15 | 15 |
uriniferous tubule | 1.46e-15 | 15 |
nephrogenic mesenchyme | 1.46e-15 | 15 |
excretory tube | 2.01e-14 | 16 |
kidney epithelium | 2.01e-14 | 16 |
cortex of kidney | 1.13e-10 | 12 |
renal parenchyma | 1.13e-10 | 12 |
cortex | 3.13e-08 | 15 |
parenchyma | 3.13e-08 | 15 |
skin of body | 1.72e-07 | 41 |
abdomen element | 2.07e-07 | 54 |
abdominal segment element | 2.07e-07 | 54 |
intermediate mesoderm | 4.51e-07 | 28 |
renal cortex tubule | 6.52e-07 | 3 |
region of nephron tubule | 6.52e-07 | 3 |
proximal tubule | 6.52e-07 | 3 |
compound organ | 8.32e-07 | 68 |
urogenital ridge | 8.67e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.56e-13 | 14 |
musculoskeletal system disease | 9.78e-12 | 5 |
myotonic disease | 9.78e-12 | 5 |
muscle tissue disease | 9.78e-12 | 5 |
myopathy | 9.78e-12 | 5 |
muscular disease | 9.78e-12 | 5 |
myotonic dystrophy | 9.78e-12 | 5 |
neuroectodermal tumor | 1.56e-08 | 10 |
nervous system cancer | 3.91e-08 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.