FFCP PHASE1:Hg19::chr17:56494830..56494851,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54894|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18505|TSSclassifier=S|UniProt=|association_with_transcript=42bp_to_uc002iwf.2_5end|coexpression_cluster_id=C42|description=CAGE_peak_4_at_RNF43_5end|id=chr17:56494830..56494851,-|ontology_enrichment_celltype=CL:0000066!1.34e-20!254;CL:0000223!5.48e-17!59;CL:0002076!5.79e-13!43;CL:0002251!2.48e-12!21;CL:0002159!5.59e-10!13|ontology_enrichment_celltype_v019=CL:0002159;5.37e-17;14!CL:0002251;1.73e-14;20!CL:0002076;2.14e-10;42!CL:0002621;2.24e-10;3!CL:0002166;3.74e-10;3!CL:0000362;6.55e-09;9!CL:0002563;5.23e-08;4!CL:0002253;7.16e-08;2!CL:0000317;2.33e-07;2!CL:1000448;2.33e-07;2!CL:0002308;2.33e-07;2!CL:0002140;2.33e-07;2!CL:0002535;4.92e-07;2!CL:0000182;7.17e-07;12!CL:0002077;9.76e-07;34|ontology_enrichment_celltype_v019_2=CL:0000223,1.48e-17,58;CL:0002159,3.69e-17,14;CL:0000066,4.65e-15,253;CL:0002251,1.27e-14,20;CL:0002076,4.62e-12,42;CL:0002621,1.26e-10,3;CL:0002166,1.44e-10,3;CL:0000362,6.42e-09,9;CL:0002563,6.13e-08,4;CL:0002253,6.84e-08,2;CL:0000317,1.51e-07,2;CL:1000448,1.51e-07,2;CL:0002308,1.51e-07,2;CL:0002140,1.51e-07,2;CL:0002077,1.81e-07,34;CL:0000182,7.33e-07,12;CL:0002535,7.86e-07,2|ontology_enrichment_development_v019=UBERON:0003104;7.45e-11;31!UBERON:0004161;2.05e-10;11!CL:0000223;6.42e-09;58!UBERON:0009497;1.07e-08;13!UBERON:0001041;2.02e-07;30!UBERON:0008814;2.33e-07;2!UBERON:0010056;2.33e-07;2|ontology_enrichment_disease=DOID:305!3.56e-28!106;DOID:0050687!8.74e-19!143;DOID:1749!9.72e-12!14;DOID:162!3.47e-10!235;DOID:14566!1.62e-09!239;DOID:3119!1.86e-07!14|ontology_enrichment_disease_v019=DOID:3119;2.15e-14;14!DOID:1749;2.63e-10;14!DOID:3493;2.77e-08;2!DOID:299;3.22e-07;25!DOID:305;4.28e-07;106|ontology_enrichment_disease_v019_2=DOID:305,8.33e-17,106;DOID:3119,1.73e-14,14;DOID:0050687,1.21e-10,143;DOID:1749,2.42e-10,14;DOID:3493,2.73e-08,2;DOID:299,3.12e-07,25;DOID:162,8.21e-07,235|ontology_enrichment_uberon=UBERON:0004119!3.61e-24!169;UBERON:0000925!3.61e-24!169;UBERON:0006595!3.61e-24!169;UBERON:0001007!1.14e-22!155;UBERON:0001555!1.14e-22!155;UBERON:0007026!1.14e-22!155;UBERON:0004921!1.09e-20!129;UBERON:0004185!1.09e-20!129;UBERON:0000077!8.48e-18!130;UBERON:0001004!2.61e-16!72;UBERON:0001041!7.58e-14!98;UBERON:0005911!1.93e-12!82;UBERON:0000065!4.62e-11!53;UBERON:0000062!2.76e-10!511;UBERON:0001048!3.97e-10!168;UBERON:0002365!6.61e-10!31;UBERON:0002330!6.61e-10!31;UBERON:0002530!8.65e-10!59;UBERON:0000344!1.35e-09!12;UBERON:0003929!1.44e-09!54;UBERON:0000481!1.07e-08!347;UBERON:0000161!1.85e-08!35;UBERON:0008947!2.01e-08!38;UBERON:0003258!2.01e-08!38;UBERON:0007023!6.19e-08!115;UBERON:0001737!1.65e-07!9;UBERON:0005153!1.68e-07!37;UBERON:0000072!1.94e-07!46;UBERON:0000466!2.89e-07!126;UBERON:0001557!3.21e-07!19;UBERON:0003101!4.79e-07!22;UBERON:0000079!4.79e-07!22|ontology_enrichment_uberon_v019=UBERON:0003929;2.32e-16;7!UBERON:0005409;7.01e-15;22!UBERON:0003350;3.15e-14;8!UBERON:0004921;5.96e-12;33!UBERON:0001949;2.24e-10;3!UBERON:0000160;3.34e-10;17!UBERON:0000344;3.21e-09;20!UBERON:0001007;5.08e-09;81!UBERON:0001555;7.69e-09;54!UBERON:0001052;2.96e-08;4!UBERON:0002365;3.08e-08;31!UBERON:0002330;3.08e-08;31!UBERON:0001242;5.23e-08;4!UBERON:0001262;5.23e-08;4!UBERON:0004786;5.23e-08;4!UBERON:0004808;5.23e-08;4!UBERON:0001277;5.23e-08;4!UBERON:0001708;1.03e-07;4!UBERON:0008895;1.03e-07;4!UBERON:0000161;1.91e-07;19!UBERON:0000166;1.91e-07;19!UBERON:0002419;2.33e-07;2!UBERON:0007771;2.33e-07;2!UBERON:0003297;2.33e-07;2!UBERON:0001821;2.33e-07;2!UBERON:0003487;2.33e-07;2!UBERON:0001820;2.33e-07;2!UBERON:0001003;2.72e-07;15!UBERON:0007376;2.72e-07;15!UBERON:0002423;3.36e-07;25!UBERON:0000059;3.54e-07;11!UBERON:0006955;4.92e-07;2!UBERON:0004801;4.92e-07;2!UBERON:0010371;7.09e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0003350,2.42e-14,8;UBERON:0001007,1.79e-13,145;UBERON:0001555,1.79e-13,145;UBERON:0007026,1.79e-13,145;UBERON:0005409,7.32e-13,25;UBERON:0004119,1.57e-12,160;UBERON:0000925,1.57e-12,160;UBERON:0006595,1.57e-12,160;UBERON:0004921,8.15e-12,118;UBERON:0001949,1.26e-10,3;UBERON:0000160,3.94e-10,17;UBERON:0003929,4.19e-10,54;UBERON:0000344,2.82e-09,20;UBERON:0002365,1.10e-08,31;UBERON:0002330,1.10e-08,31;UBERON:0005911,1.30e-08,82;UBERON:0001052,2.91e-08,4;UBERON:0000166,3.57e-08,22;UBERON:0003102,4.76e-08,99;UBERON:0001708,5.07e-08,4;UBERON:0008895,5.07e-08,4;UBERON:0001242,6.13e-08,4;UBERON:0001262,6.13e-08,4;UBERON:0004786,6.13e-08,4;UBERON:0004808,6.13e-08,4;UBERON:0001277,6.13e-08,4;UBERON:0001041,6.81e-08,87;UBERON:0002419,1.51e-07,2;UBERON:0007771,1.51e-07,2;UBERON:0003297,1.51e-07,2;UBERON:0001821,1.51e-07,2;UBERON:0003487,1.51e-07,2;UBERON:0001820,1.51e-07,2;UBERON:0005089,1.51e-07,2;UBERON:0005088,1.51e-07,2;UBERON:0007499,2.35e-07,25;UBERON:0001003,2.51e-07,15;UBERON:0007376,2.51e-07,15;UBERON:0007383,2.51e-07,15;UBERON:0009497,3.36e-07,25;UBERON:0000015,3.36e-07,25;UBERON:0002423,3.36e-07,25;UBERON:0006235,3.36e-07,25;UBERON:0004161,3.36e-07,25;UBERON:0000059,4.29e-07,11;UBERON:0009856,5.10e-07,26;UBERON:0000033,7.35e-07,56;UBERON:0006955,7.86e-07,2;UBERON:0004801,7.86e-07,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23121058076788,0,0.313454721478088,0,0,0,0.458480434487708,0.738905305049512,0.0787107813136792,0,0,0,0,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0.392937226493138,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,2.18196896472668,2.86804595389004,0.243947412259191,0,0.348581828608555,0.207322110030741,0,0,0,0,0,0,0,0.946454400318751,0.505754070234305,0.723033089650446,0.220587945464788,0.217879444092406,0.237270619111097,0.674156540800822,0.588664395376038,0.769494313892781,0,0,0,0,0,0,0.590789906681404,0,1.22988438543114,0,3.07300799144152,4.49607013030478,1.10581869652794,0.462942225792648,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,1.87467667973554,3.86358894857377,1.84307626415102,0.985143749731331,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,0.40101294060657,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13345112812495,0,0,1.72279661398852,2.60024098414608,0,0,0,0,0,0,0,0,0,0.991709492165869,0.192190067365106,2.16941611240793,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34710957815717,0,0,1.31801321087491,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0,0.222886768554957,5.11445064251544,0,0.593929361665277,0,0,0,0,0,0,0,0.552567831062295,1.0077309914171,0,0.246169610922139,0,0,0,0,0,0,0,0.969332746095218,0.0927680981618513,0,1.04171104434093,0.699679999969566,0,1.4793148277115,0.762760950878299,0,0,0.583209226766509,0,0,0,0,1.43753037910592,0.295547618953547,0,0.10893846351899,1.53366118706464,0.538651809526579,0.113942055847001,0,0,0.325942115766024,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.843992258112108,0.163232808159148,4.24059214301822,2.81305231664718,0,1.23840590304675,1.22206028986725,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.789168805698781,0,0,0.31593289814244,2.1045278718029,4.14752765588989,0,0,0,0,0,0,0,1.27390116638691,1.39294730528644,0.873633341210151,0,0,0,0,0.872901148395775,0,0.225980740780532,0,0,0,1.36885967914362,0.881747022766871,0.426905989478705,0.19980960958213,1.58499458869517,4.46692725047071,0,0.720273989940749,0,0.471388069233591,0,0,0.101998217636322,0,0,0,0,0,0,0.279282401272254,0,0,0.798716001995964,0,0,0.134366944973453,0,2.32991899054908,4.88455730304787,5.52186251153815,6.06631894687664,1.27955725969173,0.508039992394707,0,0,0,0,0,0,0,0.121499113316049,1.67717343799633,0.551639951094387,0.209818352539992,0,0,0.959575986597226,0,0,0,0,0,0,0,0,0,0.226624183040251,0.439656701034247,1.32506888912221,0,0.52893040697076,1.88195521672762,0,0.533937062838473,0.471612915298998,0.828478110694391,0,0,0.121792598380896,7.021753835472,0,0,0,0,3.14108192500469,0,0.122026264901963,0.1251909307065,0,0.221858103073705,0.18628920882415,0,0.249960815924213,0,0,0,0,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.694567422971502,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655219697692825,0,0.633936370075881,0,0,0,0,0.184105950251841,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.276629009856872,0,0,0.88332946650923,0.589848616738702,2.20114318226015,2.65709032145778,0,0,0,0.0752103283492573,0.60511520611056,0,1.04762677792569,0,4.73139475894545,0.202612753855184,0,0,0.19024743058172,0,0.548257766857182,0,0,0.638812138197976,0,0,0.606965604236632,0.227662191351298,0.354809480650555,0,0.857440047187092,0,0.0657727735628491,0.945550727071746,0.667388411352415,0.706437835654626,0,2.5224494698241,0,0.863710364874486,0,0.357382720883282,0,0,0,0,0,0.17071847709395,0,2.58136415292167,0,0,0.846774100381858,0,0,0,0,6.77236611945176,20.4822113970213,0,0,0,2.91426595835484,0,4.57586782871147,0,43.8230798311165,0,0.150962843566674,1.54348316215889,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0,0,0.178553938605658,1.41157948686277,0.481448200135009,0,1.83491713361816,0,0,0.203974470572744,0.436350690340377,0.5290268405154,0,0,0,0,0.655593431782173,0,0.407955318967927,0.534434810531121,1.01084389488329,0.250707539292375,0.606229585745915,0.267964130156178,0,0,0.852935927603924,0.23806443146374,0.129177819672012,0.682821857254437,0,0.12729431655633,0,1.08858373948481,0,0.404112318087525,0.430333232356058,0.332660356546013,0.162806537221949,0,0,0.0898252021065869,0,0.244482888365733,0,0.665756774185513,0,0|short_description=p4@RNF43}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=54894 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18505 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=42bp_to_uc002iwf.2_5end | |||
|coexpression_cluster_id=C42 | |||
|description=CAGE_peak_4_at_RNF43_5end | |||
|id=chr17:56494830..56494851,- | |||
|ontology_enrichment_celltype=CL:0000066!1.34e-20!254;CL:0000223!5.48e-17!59;CL:0002076!5.79e-13!43;CL:0002251!2.48e-12!21;CL:0002159!5.59e-10!13 | |||
|ontology_enrichment_celltype_v019=CL:0002159;5.37e-17;14!CL:0002251;1.73e-14;20!CL:0002076;2.14e-10;42!CL:0002621;2.24e-10;3!CL:0002166;3.74e-10;3!CL:0000362;6.55e-09;9!CL:0002563;5.23e-08;4!CL:0002253;7.16e-08;2!CL:0000317;2.33e-07;2!CL:1000448;2.33e-07;2!CL:0002308;2.33e-07;2!CL:0002140;2.33e-07;2!CL:0002535;4.92e-07;2!CL:0000182;7.17e-07;12!CL:0002077;9.76e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.48e-17,58;CL:0002159,3.69e-17,14;CL:0000066,4.65e-15,253;CL:0002251,1.27e-14,20;CL:0002076,4.62e-12,42;CL:0002621,1.26e-10,3;CL:0002166,1.44e-10,3;CL:0000362,6.42e-09,9;CL:0002563,6.13e-08,4;CL:0002253,6.84e-08,2;CL:0000317,1.51e-07,2;CL:1000448,1.51e-07,2;CL:0002308,1.51e-07,2;CL:0002140,1.51e-07,2;CL:0002077,1.81e-07,34;CL:0000182,7.33e-07,12;CL:0002535,7.86e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003104;7.45e-11;31!UBERON:0004161;2.05e-10;11!CL:0000223;6.42e-09;58!UBERON:0009497;1.07e-08;13!UBERON:0001041;2.02e-07;30!UBERON:0008814;2.33e-07;2!UBERON:0010056;2.33e-07;2 | |||
|ontology_enrichment_disease=DOID:305!3.56e-28!106;DOID:0050687!8.74e-19!143;DOID:1749!9.72e-12!14;DOID:162!3.47e-10!235;DOID:14566!1.62e-09!239;DOID:3119!1.86e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3119;2.15e-14;14!DOID:1749;2.63e-10;14!DOID:3493;2.77e-08;2!DOID:299;3.22e-07;25!DOID:305;4.28e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.33e-17,106;DOID:3119,1.73e-14,14;DOID:0050687,1.21e-10,143;DOID:1749,2.42e-10,14;DOID:3493,2.73e-08,2;DOID:299,3.12e-07,25;DOID:162,8.21e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.61e-24!169;UBERON:0000925!3.61e-24!169;UBERON:0006595!3.61e-24!169;UBERON:0001007!1.14e-22!155;UBERON:0001555!1.14e-22!155;UBERON:0007026!1.14e-22!155;UBERON:0004921!1.09e-20!129;UBERON:0004185!1.09e-20!129;UBERON:0000077!8.48e-18!130;UBERON:0001004!2.61e-16!72;UBERON:0001041!7.58e-14!98;UBERON:0005911!1.93e-12!82;UBERON:0000065!4.62e-11!53;UBERON:0000062!2.76e-10!511;UBERON:0001048!3.97e-10!168;UBERON:0002365!6.61e-10!31;UBERON:0002330!6.61e-10!31;UBERON:0002530!8.65e-10!59;UBERON:0000344!1.35e-09!12;UBERON:0003929!1.44e-09!54;UBERON:0000481!1.07e-08!347;UBERON:0000161!1.85e-08!35;UBERON:0008947!2.01e-08!38;UBERON:0003258!2.01e-08!38;UBERON:0007023!6.19e-08!115;UBERON:0001737!1.65e-07!9;UBERON:0005153!1.68e-07!37;UBERON:0000072!1.94e-07!46;UBERON:0000466!2.89e-07!126;UBERON:0001557!3.21e-07!19;UBERON:0003101!4.79e-07!22;UBERON:0000079!4.79e-07!22 | |||
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| |||
|short_description=p4@RNF43 | |||
}} |
Revision as of 14:48, 11 September 2013
Short description: | p4@RNF43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RNF43_5end |
Coexpression cluster: | C42_small_lung_maxillary_pharyngeal_Mesenchymal_Wilms_colon |
Association with transcript: | 42bp_to_uc002iwf.2_5end |
EntrezGene: | RNF43 |
HGNC: | 18505 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.48e-17 | 58 |
general ecto-epithelial cell | 3.69e-17 | 14 |
epithelial cell | 4.65e-15 | 253 |
epithelial cell of alimentary canal | 1.27e-14 | 20 |
endo-epithelial cell | 4.62e-12 | 42 |
gingival epithelial cell | 1.26e-10 | 3 |
epithelial cell of Malassez | 1.44e-10 | 3 |
epidermal cell | 6.42e-09 | 9 |
intestinal epithelial cell | 6.13e-08 | 4 |
epithelial cell of large intestine | 6.84e-08 | 2 |
sebum secreting cell | 1.51e-07 | 2 |
epithelial cell of sweat gland | 1.51e-07 | 2 |
epithelial cell of skin gland | 1.51e-07 | 2 |
acinar cell of sebaceous gland | 1.51e-07 | 2 |
ecto-epithelial cell | 1.81e-07 | 34 |
hepatocyte | 7.33e-07 | 12 |
epithelial cell of cervix | 7.86e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.33e-17 | 106 |
gastrointestinal system cancer | 1.73e-14 | 14 |
cell type cancer | 1.21e-10 | 143 |
squamous cell carcinoma | 2.42e-10 | 14 |
signet ring cell adenocarcinoma | 2.73e-08 | 2 |
adenocarcinoma | 3.12e-07 | 25 |
cancer | 8.21e-07 | 235 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.