FFCP PHASE1:Hg19::chr10:118031778..118031792,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2674|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4243|TSSclassifier=S|UniProt=|association_with_transcript=1bp_to_ENST00000369236_5end|coexpression_cluster_id=C1565|description=CAGE_peak_7_at_GFRA1_5end|id=chr10:118031778..118031792,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:1000497;2.25e-12;17!CL:0002518;2.25e-12;17!CL:0002681;3.10e-11;12!CL:0002584;3.10e-11;12!CL:1000746;1.84e-10;7!CL:1000612;1.84e-10;7!CL:0000064;4.39e-10;3!CL:0000067;4.39e-10;3!CL:0005012;4.39e-10;3!CL:0002304;4.39e-10;3!CL:1000449;8.90e-09;15!CL:0000077;2.42e-07;19|ontology_enrichment_celltype_v019_2=CL:1000497,1.78e-12,17;CL:0002518,1.78e-12,17;CL:0002681,3.54e-11,12;CL:0002584,3.54e-11,12;CL:1000746,2.55e-10,7;CL:1000612,2.55e-10,7;CL:0000064,5.15e-10,3;CL:0000067,5.15e-10,3;CL:0005012,5.15e-10,3;CL:0002304,5.15e-10,3;CL:0000213,6.72e-10,58;CL:0000215,6.72e-10,58;CL:1000449,9.86e-09,15;CL:0000077,2.18e-07,19|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5093;2.96e-08;4!DOID:1612;2.96e-08;4|ontology_enrichment_disease_v019_2=DOID:5093,2.87e-08,4;DOID:1612,2.87e-08,4|ontology_enrichment_uberon=UBERON:0000475!1.74e-10!365;UBERON:0000481!1.76e-08!347;UBERON:0007023!2.70e-08!115|ontology_enrichment_uberon_v019=UBERON:0000488;7.04e-13;4!UBERON:0000353;1.70e-11;15!UBERON:0001225;3.10e-11;12!UBERON:0008987;3.10e-11;12!UBERON:0000074;1.84e-10;7!UBERON:0001229;1.84e-10;7!UBERON:0001778;4.39e-10;3!UBERON:0001775;4.39e-10;3!UBERON:0001851;8.90e-09;15!UBERON:0006555;8.90e-09;15!UBERON:0004819;8.90e-09;15!UBERON:0001285;8.90e-09;15!UBERON:0007684;8.90e-09;15!UBERON:0002203;1.41e-08;6!UBERON:0001768;1.41e-08;6!UBERON:0002200;1.41e-08;6!UBERON:0002113;2.84e-08;24!UBERON:0011143;2.84e-08;24|ontology_enrichment_uberon_v019_2=UBERON:0000488,7.11e-13,4;UBERON:0000353,1.76e-11,15;UBERON:0001225,3.54e-11,12;UBERON:0008987,3.54e-11,12;UBERON:0010532,2.55e-10,7;UBERON:0000074,2.55e-10,7;UBERON:0001229,2.55e-10,7;UBERON:0001230,2.55e-10,7;UBERON:0003220,2.55e-10,7;UBERON:0005749,2.55e-10,7;UBERON:0004199,2.55e-10,7;UBERON:0004209,2.55e-10,7;UBERON:0004198,2.55e-10,7;UBERON:0001778,5.15e-10,3;UBERON:0001775,5.15e-10,3;UBERON:0005103,5.48e-09,8;UBERON:0000083,5.48e-09,8;UBERON:0009201,5.48e-09,8;UBERON:0006553,5.48e-09,8;UBERON:0003074,5.48e-09,8;UBERON:0003060,5.48e-09,8;UBERON:0001851,9.86e-09,15;UBERON:0004211,9.86e-09,15;UBERON:0009773,9.86e-09,15;UBERON:0001231,9.86e-09,15;UBERON:0001285,9.86e-09,15;UBERON:0007684,9.86e-09,15;UBERON:0004208,9.86e-09,15;UBERON:0002203,1.42e-08,6;UBERON:0001768,1.42e-08,6;UBERON:0002200,1.42e-08,6;UBERON:0006555,4.02e-08,16;UBERON:0004819,4.02e-08,16;UBERON:0000080,5.97e-08,9;UBERON:0002120,5.97e-08,9;UBERON:0004875,5.97e-08,9;UBERON:0005721,5.97e-08,9;UBERON:0005754,5.97e-08,9;UBERON:0007297,5.97e-08,9;UBERON:0002113,1.43e-07,26;UBERON:0003918,1.43e-07,26;UBERON:0011143,1.43e-07,26;UBERON:0005095,1.43e-07,26;UBERON:0007687,1.43e-07,26|phase1_expression=0,0,0.281908808191942,0,0,0,0,0.631719873426831,0.261185628199839,0.491467873003018,1.39560233594486,0,0,0,0,0,0,0,0,0.61560529038394,0.408001382488506,1.25381888591235,0.572471974262113,1.50561867580173,1.88313959392204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0.486634870302636,2.45790524626576,2.21729397462564,2.10803485663503,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0.760272105718513,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0.151357427644931,0,0,0,0,0,0.23486899728753,0,0.140450806702248,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0.423863802319124,0,0.309157587715317,1.03056216018252,1.11670113798954,0,0,0.504867548488229,1.19664868234989,1.45481451136931,1.42003837006646,0.403008392910561,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,3.85944562915731,1.38134921352481,0,1.44375896333917,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.4115740113314,1.47008711385542,0,0,0,0,0,2.74508496477641,0,0,0,0,0.325808305310325,0,0,0.927443239800615,0.352226082707465,2.59859605969933,4.62985512576611,2.47330397904978,23.7061319387783,16.3112370798026,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0.063497894292169,0,0,0,0,0,0,0,0,0,0.904902010304444,0,0,0,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,1.19812427745791,0,0,0.289562613335158,0.410952645100767,2.32779252211864,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0.49076596687656,0,0.271265023699736,0.831883446123229,3.7470087647404,3.46945313074656,0.468565659970853,0,0,0,0,0,0.173767228936166,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,1.48418066444991,0,0,0.0821271560138091,0,0,0,0,0,0.918515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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2674 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4243 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENST00000369236_5end | |||
|coexpression_cluster_id=C1565 | |||
|description=CAGE_peak_7_at_GFRA1_5end | |||
|id=chr10:118031778..118031792,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.25e-12;17!CL:0002518;2.25e-12;17!CL:0002681;3.10e-11;12!CL:0002584;3.10e-11;12!CL:1000746;1.84e-10;7!CL:1000612;1.84e-10;7!CL:0000064;4.39e-10;3!CL:0000067;4.39e-10;3!CL:0005012;4.39e-10;3!CL:0002304;4.39e-10;3!CL:1000449;8.90e-09;15!CL:0000077;2.42e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.78e-12,17;CL:0002518,1.78e-12,17;CL:0002681,3.54e-11,12;CL:0002584,3.54e-11,12;CL:1000746,2.55e-10,7;CL:1000612,2.55e-10,7;CL:0000064,5.15e-10,3;CL:0000067,5.15e-10,3;CL:0005012,5.15e-10,3;CL:0002304,5.15e-10,3;CL:0000213,6.72e-10,58;CL:0000215,6.72e-10,58;CL:1000449,9.86e-09,15;CL:0000077,2.18e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;2.96e-08;4!DOID:1612;2.96e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.87e-08,4;DOID:1612,2.87e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0000475!1.74e-10!365;UBERON:0000481!1.76e-08!347;UBERON:0007023!2.70e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;7.04e-13;4!UBERON:0000353;1.70e-11;15!UBERON:0001225;3.10e-11;12!UBERON:0008987;3.10e-11;12!UBERON:0000074;1.84e-10;7!UBERON:0001229;1.84e-10;7!UBERON:0001778;4.39e-10;3!UBERON:0001775;4.39e-10;3!UBERON:0001851;8.90e-09;15!UBERON:0006555;8.90e-09;15!UBERON:0004819;8.90e-09;15!UBERON:0001285;8.90e-09;15!UBERON:0007684;8.90e-09;15!UBERON:0002203;1.41e-08;6!UBERON:0001768;1.41e-08;6!UBERON:0002200;1.41e-08;6!UBERON:0002113;2.84e-08;24!UBERON:0011143;2.84e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,7.11e-13,4;UBERON:0000353,1.76e-11,15;UBERON:0001225,3.54e-11,12;UBERON:0008987,3.54e-11,12;UBERON:0010532,2.55e-10,7;UBERON:0000074,2.55e-10,7;UBERON:0001229,2.55e-10,7;UBERON:0001230,2.55e-10,7;UBERON:0003220,2.55e-10,7;UBERON:0005749,2.55e-10,7;UBERON:0004199,2.55e-10,7;UBERON:0004209,2.55e-10,7;UBERON:0004198,2.55e-10,7;UBERON:0001778,5.15e-10,3;UBERON:0001775,5.15e-10,3;UBERON:0005103,5.48e-09,8;UBERON:0000083,5.48e-09,8;UBERON:0009201,5.48e-09,8;UBERON:0006553,5.48e-09,8;UBERON:0003074,5.48e-09,8;UBERON:0003060,5.48e-09,8;UBERON:0001851,9.86e-09,15;UBERON:0004211,9.86e-09,15;UBERON:0009773,9.86e-09,15;UBERON:0001231,9.86e-09,15;UBERON:0001285,9.86e-09,15;UBERON:0007684,9.86e-09,15;UBERON:0004208,9.86e-09,15;UBERON:0002203,1.42e-08,6;UBERON:0001768,1.42e-08,6;UBERON:0002200,1.42e-08,6;UBERON:0006555,4.02e-08,16;UBERON:0004819,4.02e-08,16;UBERON:0000080,5.97e-08,9;UBERON:0002120,5.97e-08,9;UBERON:0004875,5.97e-08,9;UBERON:0005721,5.97e-08,9;UBERON:0005754,5.97e-08,9;UBERON:0007297,5.97e-08,9;UBERON:0002113,1.43e-07,26;UBERON:0003918,1.43e-07,26;UBERON:0011143,1.43e-07,26;UBERON:0005095,1.43e-07,26;UBERON:0007687,1.43e-07,26 | |||
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| |||
|short_description=p7@GFRA1 | |||
}} |
Revision as of 11:54, 10 September 2013
Short description: | p7@GFRA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_GFRA1_5end |
Coexpression cluster: | C1565_MCF7_normal_mesothelioma_Smooth_breast_thyroid_bone |
Association with transcript: | 1bp_to_ENST00000369236_5end |
EntrezGene: | GFRA1 |
HGNC: | 4243 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.78e-12 | 17 |
kidney epithelial cell | 1.78e-12 | 17 |
kidney cortical cell | 3.54e-11 | 12 |
renal cortical epithelial cell | 3.54e-11 | 12 |
glomerular cell | 2.55e-10 | 7 |
kidney corpuscule cell | 2.55e-10 | 7 |
ciliated cell | 5.15e-10 | 3 |
ciliated epithelial cell | 5.15e-10 | 3 |
multi-ciliated epithelial cell | 5.15e-10 | 3 |
non-pigmented ciliary epithelial cell | 5.15e-10 | 3 |
lining cell | 6.72e-10 | 58 |
barrier cell | 6.72e-10 | 58 |
epithelial cell of nephron | 9.86e-09 | 15 |
mesothelial cell | 2.18e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.87e-08 | 4 |
breast cancer | 2.87e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.