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(Created page with "{{f5samples |id=FF:11840-124H4 |name=mesenchymal precursor cell - bone marrow, donor3 |sample_id=11840 |rna_tube_id= |rna_box=124 |rna_position=H4 |sample_cell_lot=BM-2...")
 
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{{f5samples
{{f5samples
|id=FF:11840-124H4
|DRA_sample_Accession=CAGE@SAMD00005575
|name=mesenchymal precursor cell - bone marrow, donor3
|accession_numbers=CAGE;DRX008550;DRR009422;DRZ000847;DRZ002232;DRZ012197;DRZ013582
|sample_id=11840
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|rna_box=124
|rna_position=H4
|sample_cell_lot=BM-29
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=bone marrow
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.61000
|rna_od260/280=2.05000
|sample_cell_type=mesenchymal precursor cell
|sample_cell_line=
|sample_collaboration=Claudio Schneider LNCIB
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.12725
|rna_concentration=0.28935
|sample_note=
|profile_hcage=CNhs13098,LSID1001,,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000269
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.96!235.80!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.82!73.85!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.49!FOXQ1;;chr8:25902876..25902936,-!p1@EBF2!1.46!27.58!EBF2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!27.58!HOXC5;;chr5:158526917..158526932,-!p1@EBF1!1.42!61.40!EBF1;;chr4:26322267..26322334,+!p3@RBPJ!1.37!53.39!RBPJ;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.25!PRRX1;;chr17:48072574..48072597,-!p1@DLX3!1.37!22.25!DLX3;;chr1:158985493..158985535,+!p4@IFI16!1.35!32.03!IFI16;;chr16:79633894..79633954,-!p3@MAF!1.34!40.04!MAF;;chr6:1610293..1610310,+!p1@FOXC1!1.32!32.92!FOXC1;;chr10:131762504..131762555,-!p1@EBF3!1.31!19.58!EBF3;;chr1:170632959..170632987,+!p4@PRRX1!1.29!20.47!PRRX1;;chr12:54393880..54393962,+!p1@HOXC9!1.29!18.69!HOXC9;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.20!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.25!46.27!TWIST1;;chr20:50179368..50179392,-!p2@NFATC2!1.24!21.36!NFATC2;;chr1:170633262..170633285,+!p3@PRRX1!1.22!17.80!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.21!281.18!FOSB;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.25!NFIX;;chr12:66218255..66218304,+!p3@HMGA2!1.20!40.04!HMGA2;;chr8:22550982..22550999,-!p1@EGR3!1.16!38.26!EGR3;;chr12:54402745..54402788,+!p1@HOXC8!1.16!13.35!HOXC8;;chr1:44513995..44514031,+!p1@KLF17!1.16!13.35!KLF17;;chr16:79634624..79634642,-!p1@MAF!1.12!48.05!MAF;;chr11:46299539..46299620,+!p2@CREB3L1!1.12!20.47!CREB3L1;;chr12:66218598..66218645,+!p2@HMGA2!1.10!53.39!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!1.10!11.57!HOXC10;;chr4:26323764..26323821,+!p15@RBPJ!1.10!11.57!RBPJ;;chr16:79634595..79634620,-!p2@MAF!1.08!20.47!MAF;;chr12:54379029..54379057,+!p2@HOXC10!1.07!10.68!HOXC10;;chr1:203055129..203055147,-!p1@MYOG!1.07!10.68!MYOG;;chr17:59477233..59477263,+!p1@TBX2!1.06!32.92!TBX2;;chr6:85474299..85474324,-!p1@TBX18!1.04!17.80!TBX18;;chr10:63809106..63809127,+!p1@ARID5B!1.03!133.47!ARID5B;;chr12:54378923..54378966,+!p1@HOXC10!1.03!9.79!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.03!9.79!HOXC5;;chr17:48046642..48046667,+!p3@DLX4!1.03!9.79!DLX4;;chr1:170632683..170632696,+!p12@PRRX1!1.03!9.79!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!1.03!9.79!PRRX1;;chr14:75745523..75745537,+!p1@FOS!1.02!1148.75!FOS;;chr10:63809013..63809041,+!p3@ARID5B!1.02!53.39!ARID5B;;chr5:158526459..158526481,-!p2@EBF1!1.01!12.46!EBF1;;chr3:21792682..21792720,-!p1@ZNF385D!1.00!8.90!ZNF385D;;chr6:45296048..45296082,+!p1@RUNX2!0.98!9.79!RUNX2;;chr6:126240442..126240459,+!p4@NCOA7!0.97!10.68!NCOA7;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.90!SHOX2;;chr1:158969752..158969780,+!p6@IFI16!0.96!14.24!IFI16;;chr11:65686802..65686818,+!p6@DRAP1!0.96!14.24!DRAP1;;chr1:158985469..158985489,+!p7@IFI16!0.96!9.79!IFI16;;chr5:137804484..137804498,+!p2@EGR1!0.95!32.92!EGR1;;chr9:16870659..16870675,-!p2@BNC2!0.95!9.79!BNC2;;chr1:170632477..170632506,+!p6@PRRX1!0.95!8.01!PRRX1;;chr2:19558327..19558334,-!p2@OSR1!0.95!8.01!OSR1;;chr4:174450089..174450153,-!p2@HAND2!0.95!8.01!HAND2;;chr7:27205106..27205134,-!p2@HOXA9!0.95!8.01!HOXA9;;chr12:54380036..54380091,+!p4@HOXC10!0.95!8.01!HOXC10;;chr2:191878874..191878938,-!p1@STAT1!0.93!425.33!STAT1;;chr11:65687362..65687436,+!p3@DRAP1!0.93!35.59!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.58!RUNX1;;chr1:158979872..158979898,+!p3@IFI16!0.93!24.02!IFI16;;chr15:42749722..42749739,-!p2@ZFP106!0.92!13.35!ZFP106;;chr7:28448965..28448994,+!p2@CREB5!0.91!25.80!CREB5;;chr8:93074848..93074871,-!p3@RUNX1T1!0.91!7.12!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.91!7.12!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.12!PRRX1;;chr12:54422217..54422239,+!p3@HOXC6!0.91!7.12!HOXC6;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.12!SIX2;;chr4:174451370..174451387,-!p1@HAND2!0.91!7.12!HAND2;;chr4:26323870..26323885,+!p13@RBPJ!0.91!7.12!RBPJ;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.58!SIX1;;chr15:57511609..57511651,+!p2@TCF12!0.89!11.57!TCF12;;chr1:158979792..158979814,+!p2@IFI16!0.88!66.74!IFI16;;chr7:28725740..28725778,+!p1@CREB5!0.88!62.29!CREB5;;chr8:49833948..49833973,-!p2@SNAI2!0.87!42.71!SNAI2;;chr11:65686732..65686756,+!p2@DRAP1!0.87!28.47!DRAP1;;chr3:21792585..21792625,-!p2@ZNF385D!0.87!7.12!ZNF385D;;chr10:63809090..63809097,+!p7@ARID5B!0.86!8.90!ARID5B;;chr11:46299186..46299195,+!p3@CREB3L1!0.86!7.12!CREB3L1;;chr11:46299443..46299459,+!p4@CREB3L1!0.86!6.23!CREB3L1;;chr2:102091144..102091183,-!p2@RFX8!0.86!6.23!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.23!SIX2;;chr4:26324474..26324501,+!p16@RBPJ!0.86!6.23!RBPJ;;chr5:137801160..137801176,+!p1@EGR1!0.84!625.54!EGR1;;chr12:53614115..53614154,-!p1@RARG!0.84!33.81!RARG;;chr3:114343768..114343822,-!p1@ZBTB20!0.84!27.58!ZBTB20;;chr7:113726357..113726443,+!p1@FOXP2!0.84!10.68!FOXP2;;chr8:49833978..49833996,-!p1@SNAI2!0.81!122.79!SNAI2;;chr7:14029283..14029311,-!p1@ETV1!0.81!31.14!ETV1;;chr14:62203595..62203676,+!p4@HIF1A!0.81!10.68!HIF1A;;chr9:2158443..2158481,+!p2@SMARCA2!0.80!16.02!SMARCA2;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.24!TWIST1;;chr15:66994561..66994597,+!p2@SMAD6!0.80!13.35!SMAD6;;chr15:67458861..67458879,+!p17@SMAD3!0.80!5.34!SMAD3;;chr19:13135582..13135600,+!p3@NFIX!0.80!5.34!NFIX;;chr6:1612300..1612324,+!p3@FOXC1!0.80!5.34!FOXC1;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.34!HMGA2;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.34!HOXD8;;chr3:42695180..42695201,+!p2@ZBTB47!0.80!5.34!ZBTB47;;chr9:4300050..4300118,-!p1@GLIS3!0.79!36.48!GLIS3;;chr19:45254529..45254561,+!p10@BCL3!0.79!7.12!BCL3;;chr12:66218836..66218888,+!p1@HMGA2!0.77!49.83!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.91!TWIST2;;chr10:64576105..64576133,-!p1@EGR2!0.77!10.68!EGR2;;chr6:126240380..126240430,+!p2@NCOA7!0.76!13.35!NCOA7;;chr14:75746722..75746777,+!p2@FOS!0.76!6.23!FOS;;chr1:23694556..23694584,-!p6@ZNF436!0.76!6.23!ZNF436;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.12!HMGA2;;chr3:12330560..12330579,+!p1@PPARG!0.75!5.34!PPARG;;chr14:62162285..62162296,+!p3@HIF1A!0.74!25.80!HIF1A;;chr12:54378984..54378996,+!p7@HOXC10!0.74!4.45!HOXC10;;chr12:54394309..54394336,+!p2@HOXC9!0.74!4.45!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.74!4.45!HMGA2;;chr12:81110684..81110700,+!p1@MYF5!0.74!4.45!MYF5;;chr1:119530493..119530572,-!p1@TBX15!0.74!4.45!TBX15;;chr1:170632115..170632136,+!p9@PRRX1!0.74!4.45!PRRX1;;chr1:40105299..40105326,-!p1@HEYL!0.74!4.45!HEYL;;chr20:51589133..51589159,+!p2@TSHZ2!0.74!4.45!TSHZ2;;chr7:27192185..27192209,-!p1@HOXA3!0.74!4.45!HOXA3;;chr7:27196267..27196311,-!p1@HOXA7!0.74!4.45!HOXA7;;chr3:157824001..157824078,-!p2@SHOX2!0.74!4.45!SHOX2;;chr17:48046881..48046905,+!p5@DLX4!0.74!4.45!DLX4;;chr5:321810..321877,+!p1@AHRR!0.73!15.13!AHRR;;chr12:66218183..66218209,+!p4@HMGA2!0.73!8.90!HMGA2;;chr9:16870710..16870763,-!p1@BNC2!0.73!8.01!BNC2;;chr9:4300016..4300039,-!p2@GLIS3!0.73!8.01!GLIS3;;chr7:44143925..44143970,+!p1@AEBP1!0.72!106.78!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!46.27!HIF1A;;chr7:42276787..42276815,-!p1@GLI3!0.72!12.46!GLI3;;chr10:63809134..63809145,+!p6@ARID5B!0.72!10.68!ARID5B;;chr7:28448995..28449011,+!p4@CREB5!0.72!6.23!CREB5;;chr2:28616337..28616355,+!p2@FOSL2!0.71!83.64!FOSL2;;chr8:116681409..116681431,-!p2@TRPS1!0.71!12.46!TRPS1;;chr10:63809077..63809089,+!p5@ARID5B!0.71!9.79!ARID5B;;chr17:38256799..38256815,-!p3@NR1D1!0.71!8.01!NR1D1;;chr4:26322373..26322393,+!p4@RBPJ!0.70!6.23!RBPJ;;chr2:191878812..191878823,-!p2@STAT1!0.70!5.34!STAT1;;chr10:63808979..63808990,+!p8@ARID5B!0.70!4.45!ARID5B;;chr3:12329397..12329433,+!p2@PPARG!0.69!9.79!PPARG;;chr20:51588873..51588953,+!p1@TSHZ2!0.69!5.34!TSHZ2;;chr14:24837368..24837401,+!p1@NFATC4!0.68!9.79!NFATC4;;chr5:134369905..134369972,-!p1@PITX1!0.68!6.23!PITX1;;chr12:56753869..56753930,-!p1@STAT2!0.67!188.64!STAT2;;chr9:4299979..4299996,-!p3@GLIS3!0.66!6.23!GLIS3;;chr14:24630902..24630948,+!p2@IRF9!0.66!4.45!IRF9;;chr10:45495946..45495976,+!p2@ZNF22!0.66!3.56!ZNF22;;chr11:65668011..65668020,-!p3@FOSL1!0.66!3.56!FOSL1;;chr12:54422245..54422263,+!p7@HOXC6!0.66!3.56!HOXC6;;chr3:141121871..141121885,+!p13@ZBTB38!0.66!3.56!ZBTB38;;chr3:21792790..21792824,-!p4@ZNF385D!0.66!3.56!ZNF385D;;chr4:26322673..26322684,+!p11@RBPJ!0.66!3.56!RBPJ;;chr7:27224795..27224840,-!p2@HOXA11!0.66!3.56!HOXA11;;chr8:116673894..116673913,-!p12@TRPS1!0.66!3.56!TRPS1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.66!3.56!RUNX1T1;;chr1:170632137..170632172,+!p10@PRRX1!0.66!3.56!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.66!3.56!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.66!3.56!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.66!3.56!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.66!3.56!PRRX1;;chr15:66994885..66994904,+!p7@SMAD6!0.66!3.56!SMAD6;;chr15:67458491..67458505,+!p18@SMAD3!0.66!3.56!SMAD3;;chr15:67458836..67458859,+!p22@SMAD3!0.66!3.56!SMAD3;;chr16:31076332..31076388,-!p3@ZNF668!0.66!3.56!ZNF668;;chr17:48046671..48046697,+!p4@DLX4!0.66!3.56!DLX4;;chr19:13135386..13135435,+!p4@NFIX!0.66!3.56!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.65!93.43!NFIX;;chr5:174151553..174151610,+!p1@MSX2!0.65!6.23!MSX2;;chr9:110252035..110252057,-!p1@KLF4!0.64!64.07!KLF4;;chr2:28616358..28616380,+!p3@FOSL2!0.64!20.47!FOSL2;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.80!FOXD1;;chr21:47063625..47063658,+!p1@PCBP3!0.64!16.91!PCBP3;;chr22:38598057..38598071,+!p3@MAFF!0.64!8.90!MAFF;;chr11:706938..707008,-!p3@DEAF1!0.64!4.45!DEAF1;;chr14:24630465..24630531,+!p1@IRF9!0.63!149.49!IRF9;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.01!IFI16;;chr11:615570..615721,-!p2@IRF7!0.63!7.12!IRF7;;chr11:65687222..65687240,+!p7@DRAP1!0.63!4.45!DRAP1;;chr5:137804130..137804156,+!p5@EGR1!0.63!3.56!EGR1;;chr12:27485762..27485776,+!p3@ARNTL2!0.62!9.79!ARNTL2;;chr3:5021268..5021282,+!p4@BHLHE40!0.62!7.12!BHLHE40;;chr8:116680215..116680245,-!p6@TRPS1!0.62!5.34!TRPS1;;chr8:99956662..99956684,+!p1@OSR2!0.62!5.34!OSR2;;chr2:46602901..46602926,+!p7@EPAS1!0.62!4.45!EPAS1;;chr6:126240463..126240489,+!p6@NCOA7!0.61!3.56!NCOA7;;chr7:17338266..17338282,+!p1@AHR!0.60!39.15!AHR;;chr22:38598086..3859810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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520bone%2520marrow%252c%2520donor3.CNhs13098.11840-124H4.hg38.nobarcode.ctss.bed.gz
|id=FF:11840-124H4
|is_a=EFO:0002091;;FF:0000269
|is_obsolete=
|library_id=CNhs13098
|library_id_phase_based=2:CNhs13098
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11840
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11840
|name=mesenchymal precursor cell - bone marrow, donor3
|namespace=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs13098,LSID1001,release013,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=124
|rna_catalog_number=
|rna_concentration=0.28935
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=1.61
|rna_od260/280=2.05
|rna_position=H4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=124H4
|rna_weight_ug=10.12725
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=BM-29
|sample_cell_type=mesenchymal precursor cell
|sample_collaboration=Claudio Schneider LNCIB
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.6436462585624e-224!GO:0005737;cytoplasm;2.84668569309797e-186!GO:0044444;cytoplasmic part;1.69660986020961e-145!GO:0043226;organelle;6.37377688672906e-140!GO:0043229;intracellular organelle;1.23843535009089e-139!GO:0043231;intracellular membrane-bound organelle;2.19212669906934e-136!GO:0043227;membrane-bound organelle;4.00640871398813e-136!GO:0044422;organelle part;1.35702860591616e-112!GO:0044446;intracellular organelle part;3.31330764963752e-111!GO:0032991;macromolecular complex;9.7881417187573e-80!GO:0030529;ribonucleoprotein complex;4.7995117866148e-68!GO:0005515;protein binding;3.98470218273695e-64!GO:0044237;cellular metabolic process;1.52025727417864e-62!GO:0005739;mitochondrion;2.83245054490362e-62!GO:0044238;primary metabolic process;9.07043058604776e-61!GO:0043233;organelle lumen;2.556510012434e-58!GO:0031974;membrane-enclosed lumen;2.556510012434e-58!GO:0003723;RNA binding;8.14520548853912e-55!GO:0043170;macromolecule metabolic process;2.6404340817335e-54!GO:0031090;organelle membrane;1.5561367902377e-51!GO:0044428;nuclear part;5.33521172661998e-48!GO:0005840;ribosome;2.41372318385469e-45!GO:0019538;protein metabolic process;4.74788998632348e-45!GO:0043234;protein complex;5.61417219512905e-41!GO:0006412;translation;8.34186306559603e-41!GO:0044260;cellular macromolecule metabolic process;2.55050617232611e-40!GO:0044429;mitochondrial part;2.91186313835407e-40!GO:0015031;protein transport;6.35475476803542e-40!GO:0003735;structural constituent of ribosome;7.73552837786815e-40!GO:0033036;macromolecule localization;2.03877088050481e-39!GO:0044267;cellular protein metabolic process;6.68410986522329e-39!GO:0045184;establishment of protein localization;5.44491306656215e-38!GO:0008104;protein localization;2.25164916451136e-37!GO:0009058;biosynthetic process;2.52819672582159e-37!GO:0005829;cytosol;2.81450226111508e-37!GO:0016043;cellular component organization and biogenesis;1.98661688386285e-36!GO:0033279;ribosomal subunit;4.44404298177047e-36!GO:0009059;macromolecule biosynthetic process;9.08573774381924e-36!GO:0006396;RNA processing;1.33281361072984e-34!GO:0005634;nucleus;7.05346600482578e-34!GO:0044249;cellular biosynthetic process;2.96533402361439e-32!GO:0031967;organelle envelope;7.99994412429197e-32!GO:0031975;envelope;1.2627906648952e-31!GO:0031981;nuclear lumen;2.19475277289993e-30!GO:0046907;intracellular transport;3.79566966560356e-30!GO:0016071;mRNA metabolic process;1.09141824352183e-28!GO:0008380;RNA splicing;6.50632499841179e-27!GO:0006886;intracellular protein transport;1.70508338597147e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.73837742764719e-26!GO:0005740;mitochondrial envelope;1.34008927364273e-25!GO:0006397;mRNA processing;1.76348268693099e-24!GO:0031966;mitochondrial membrane;2.19950219196344e-24!GO:0065003;macromolecular complex assembly;2.72468294034819e-24!GO:0005783;endoplasmic reticulum;3.85270377882249e-24!GO:0019866;organelle inner membrane;6.70325045975709e-24!GO:0005743;mitochondrial inner membrane;7.99524919275457e-23!GO:0022607;cellular component assembly;3.5336126107424e-22!GO:0006119;oxidative phosphorylation;7.4517585953437e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.60025974129473e-21!GO:0010467;gene expression;1.61284480004226e-21!GO:0043283;biopolymer metabolic process;2.96733754305872e-21!GO:0012505;endomembrane system;7.03087814089873e-21!GO:0006457;protein folding;1.24808955805115e-20!GO:0044445;cytosolic part;1.33974577664377e-20!GO:0044432;endoplasmic reticulum part;1.20482468240443e-19!GO:0043228;non-membrane-bound organelle;1.6847088902455e-19!GO:0043232;intracellular non-membrane-bound organelle;1.6847088902455e-19!GO:0015934;large ribosomal subunit;2.50417735912449e-19!GO:0048770;pigment granule;4.69140122605413e-19!GO:0042470;melanosome;4.69140122605413e-19!GO:0044455;mitochondrial membrane part;4.72009156153888e-19!GO:0051649;establishment of cellular localization;7.82031209575468e-19!GO:0051641;cellular localization;9.92446425179005e-19!GO:0005654;nucleoplasm;1.20209432056088e-18!GO:0005681;spliceosome;3.70034142922702e-18!GO:0031980;mitochondrial lumen;9.56881266471675e-18!GO:0005759;mitochondrial matrix;9.56881266471675e-18!GO:0015935;small ribosomal subunit;1.0178472612792e-17!GO:0005794;Golgi apparatus;1.34447055246603e-17!GO:0006996;organelle organization and biogenesis;2.045510675317e-17!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.51990614914503e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.78695588688152e-17!GO:0016462;pyrophosphatase activity;5.39842654058655e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.03943818689178e-17!GO:0051186;cofactor metabolic process;8.65308840943748e-17!GO:0005746;mitochondrial respiratory chain;2.95696093669737e-16!GO:0017111;nucleoside-triphosphatase activity;3.77051052300279e-16!GO:0044265;cellular macromolecule catabolic process;6.44982734415647e-16!GO:0044451;nucleoplasm part;7.23863968892693e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.10128513298671e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.53306525394916e-15!GO:0022618;protein-RNA complex assembly;1.16831428208547e-14!GO:0006512;ubiquitin cycle;1.83122905873596e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.18645990632314e-14!GO:0003954;NADH dehydrogenase activity;2.18645990632314e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.18645990632314e-14!GO:0044248;cellular catabolic process;3.4505319923986e-14!GO:0008134;transcription factor binding;4.29992562479268e-14!GO:0043285;biopolymer catabolic process;4.56122732621403e-14!GO:0009057;macromolecule catabolic process;7.43468044951158e-14!GO:0016874;ligase activity;8.13854859284704e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.59028057619712e-14!GO:0006605;protein targeting;9.26119954473695e-14!GO:0048193;Golgi vesicle transport;1.06748992945422e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.6833098705035e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.70800567582318e-13!GO:0019941;modification-dependent protein catabolic process;1.81238441579359e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.81238441579359e-13!GO:0044257;cellular protein catabolic process;1.89516714753897e-13!GO:0005761;mitochondrial ribosome;2.23767818608062e-13!GO:0000313;organellar ribosome;2.23767818608062e-13!GO:0000166;nucleotide binding;3.58494090143808e-13!GO:0005789;endoplasmic reticulum membrane;3.87673283984617e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.19522312987464e-13!GO:0005730;nucleolus;5.24633928190998e-13!GO:0051082;unfolded protein binding;6.23954419084102e-13!GO:0016192;vesicle-mediated transport;8.4591091727705e-13!GO:0005793;ER-Golgi intermediate compartment;1.01499909587826e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.05656155013008e-12!GO:0045271;respiratory chain complex I;1.05656155013008e-12!GO:0005747;mitochondrial respiratory chain complex I;1.05656155013008e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.10206800353763e-12!GO:0006732;coenzyme metabolic process;1.16512502748573e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.28839923053426e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.76472718494655e-12!GO:0042773;ATP synthesis coupled electron transport;1.76472718494655e-12!GO:0008135;translation factor activity, nucleic acid binding;2.33398462083945e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.44406386924869e-12!GO:0030163;protein catabolic process;4.29012793519663e-12!GO:0016491;oxidoreductase activity;1.28190000369796e-10!GO:0006259;DNA metabolic process;2.22120577207463e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.28991938274602e-10!GO:0012501;programmed cell death;3.77877956388418e-10!GO:0006915;apoptosis;5.11141239839846e-10!GO:0006163;purine nucleotide metabolic process;5.50720342672903e-10!GO:0009150;purine ribonucleotide metabolic process;6.40883915550594e-10!GO:0009259;ribonucleotide metabolic process;6.45442994589841e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.41552319002858e-10!GO:0000375;RNA splicing, via transesterification reactions;7.41552319002858e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.41552319002858e-10!GO:0009055;electron carrier activity;8.60915153350477e-10!GO:0003743;translation initiation factor activity;8.71420754858671e-10!GO:0006413;translational initiation;1.68869693402522e-09!GO:0005773;vacuole;1.95071671626125e-09!GO:0008219;cell death;1.97493971742066e-09!GO:0016265;death;1.97493971742066e-09!GO:0009141;nucleoside triphosphate metabolic process;2.36597628987419e-09!GO:0017076;purine nucleotide binding;2.36597628987419e-09!GO:0005788;endoplasmic reticulum lumen;2.83372251732686e-09!GO:0043412;biopolymer modification;3.23407958976346e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.36344972866985e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.36344972866985e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.46091676822154e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.55172052241736e-09!GO:0032553;ribonucleotide binding;4.87909226133278e-09!GO:0032555;purine ribonucleotide binding;4.87909226133278e-09!GO:0006164;purine nucleotide biosynthetic process;5.62973549416574e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.52762881510636e-09!GO:0016604;nuclear body;7.16851926116818e-09!GO:0005768;endosome;7.45241353589701e-09!GO:0006446;regulation of translational initiation;8.91178398274978e-09!GO:0015986;ATP synthesis coupled proton transport;1.06111485697489e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.06111485697489e-08!GO:0048523;negative regulation of cellular process;1.4157965810972e-08!GO:0009056;catabolic process;1.4157965810972e-08!GO:0019829;cation-transporting ATPase activity;1.68012049415812e-08!GO:0046034;ATP metabolic process;1.68012049415812e-08!GO:0009260;ribonucleotide biosynthetic process;1.68138461654362e-08!GO:0003712;transcription cofactor activity;1.83626635570953e-08!GO:0000323;lytic vacuole;2.0113562772742e-08!GO:0005764;lysosome;2.0113562772742e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.12521304314131e-08!GO:0003676;nucleic acid binding;2.13679251706756e-08!GO:0044431;Golgi apparatus part;2.61261789388357e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.12563094297763e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.12563094297763e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.35623871246881e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.35623871246881e-08!GO:0008639;small protein conjugating enzyme activity;3.67552270233668e-08!GO:0006091;generation of precursor metabolites and energy;3.9306903732287e-08!GO:0006464;protein modification process;3.98111522140269e-08!GO:0051188;cofactor biosynthetic process;4.21187504626875e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.63069663718895e-08!GO:0003924;GTPase activity;4.66709082031838e-08!GO:0006913;nucleocytoplasmic transport;4.66709082031838e-08!GO:0009060;aerobic respiration;5.04026406855803e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.43822199681892e-08!GO:0008565;protein transporter activity;6.5972914564742e-08!GO:0004842;ubiquitin-protein ligase activity;6.63782143640349e-08!GO:0019787;small conjugating protein ligase activity;7.28819203008512e-08!GO:0051169;nuclear transport;8.80476162966326e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.49072724236746e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.50306160910507e-08!GO:0016887;ATPase activity;1.0124557480587e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.03600111832869e-07!GO:0030120;vesicle coat;1.03600111832869e-07!GO:0030662;coated vesicle membrane;1.03600111832869e-07!GO:0042254;ribosome biogenesis and assembly;1.0750487183888e-07!GO:0045333;cellular respiration;1.09666075150444e-07!GO:0017038;protein import;1.17105401550582e-07!GO:0031965;nuclear membrane;1.18479693443937e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.24865244522698e-07!GO:0006754;ATP biosynthetic process;1.32110659406161e-07!GO:0006753;nucleoside phosphate metabolic process;1.32110659406161e-07!GO:0005635;nuclear envelope;1.62000631161223e-07!GO:0042623;ATPase activity, coupled;1.88108182284595e-07!GO:0044440;endosomal part;1.91026398861371e-07!GO:0010008;endosome membrane;1.91026398861371e-07!GO:0006461;protein complex assembly;1.98420027048315e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.52245043386513e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.38272587422246e-07!GO:0016607;nuclear speck;3.49629901579121e-07!GO:0048519;negative regulation of biological process;3.76525357479351e-07!GO:0016881;acid-amino acid ligase activity;4.17229118332368e-07!GO:0042981;regulation of apoptosis;5.4088623862966e-07!GO:0043067;regulation of programmed cell death;7.45961655155037e-07!GO:0048475;coated membrane;8.42634435510018e-07!GO:0030117;membrane coat;8.42634435510018e-07!GO:0004298;threonine endopeptidase activity;8.86029601543767e-07!GO:0009117;nucleotide metabolic process;9.11534032100995e-07!GO:0016070;RNA metabolic process;9.95063233650993e-07!GO:0004386;helicase activity;1.33294483192462e-06!GO:0031988;membrane-bound vesicle;1.38285475500169e-06!GO:0006099;tricarboxylic acid cycle;1.39378352045822e-06!GO:0046356;acetyl-CoA catabolic process;1.39378352045822e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.43764423101455e-06!GO:0000139;Golgi membrane;1.46238361822215e-06!GO:0007049;cell cycle;1.52005809570918e-06!GO:0051187;cofactor catabolic process;1.52005809570918e-06!GO:0005524;ATP binding;1.83650916526428e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.91483772202312e-06!GO:0043069;negative regulation of programmed cell death;1.93748683369658e-06!GO:0006974;response to DNA damage stimulus;1.95766712050675e-06!GO:0030554;adenyl nucleotide binding;1.95766712050675e-06!GO:0009108;coenzyme biosynthetic process;2.21108833998971e-06!GO:0043066;negative regulation of apoptosis;2.21108833998971e-06!GO:0044453;nuclear membrane part;2.36328334373351e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.37618160893064e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.37618160893064e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.37618160893064e-06!GO:0031252;leading edge;2.41324381819217e-06!GO:0051789;response to protein stimulus;2.42728754281138e-06!GO:0006986;response to unfolded protein;2.42728754281138e-06!GO:0006366;transcription from RNA polymerase II promoter;2.57183017908263e-06!GO:0032559;adenyl ribonucleotide binding;3.1558238240637e-06!GO:0009109;coenzyme catabolic process;3.30744015540168e-06!GO:0043038;amino acid activation;3.37858055884792e-06!GO:0006418;tRNA aminoacylation for protein translation;3.37858055884792e-06!GO:0043039;tRNA aminoacylation;3.37858055884792e-06!GO:0005770;late endosome;3.4671899269278e-06!GO:0051246;regulation of protein metabolic process;3.98679805730346e-06!GO:0043687;post-translational protein modification;4.14631663756106e-06!GO:0045259;proton-transporting ATP synthase complex;4.47850425601513e-06!GO:0008026;ATP-dependent helicase activity;4.48927362965164e-06!GO:0006084;acetyl-CoA metabolic process;4.65694156158646e-06!GO:0006399;tRNA metabolic process;4.67850563315826e-06!GO:0031982;vesicle;5.26887817216274e-06!GO:0006916;anti-apoptosis;5.26887817216274e-06!GO:0016787;hydrolase activity;5.28491072069096e-06!GO:0043566;structure-specific DNA binding;6.23425048067992e-06!GO:0031410;cytoplasmic vesicle;6.23425048067992e-06!GO:0065002;intracellular protein transport across a membrane;6.4398117795018e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.66834484377276e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.55971132233039e-06!GO:0016859;cis-trans isomerase activity;8.33812566286768e-06!GO:0008361;regulation of cell size;1.01235841400665e-05!GO:0044262;cellular carbohydrate metabolic process;1.02989826467342e-05!GO:0000074;regulation of progression through cell cycle;1.15066473596223e-05!GO:0006752;group transfer coenzyme metabolic process;1.16313385050303e-05!GO:0051726;regulation of cell cycle;1.22881387802983e-05!GO:0016049;cell growth;1.24343560961441e-05!GO:0008654;phospholipid biosynthetic process;1.35874453352183e-05!GO:0016853;isomerase activity;1.51627295015884e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.52206708430548e-05!GO:0005762;mitochondrial large ribosomal subunit;1.52421093115026e-05!GO:0000315;organellar large ribosomal subunit;1.52421093115026e-05!GO:0007005;mitochondrion organization and biogenesis;1.60089688059303e-05!GO:0045786;negative regulation of progression through cell cycle;1.61117073719573e-05!GO:0051170;nuclear import;1.87791872977383e-05!GO:0005525;GTP binding;2.06604162963853e-05!GO:0065004;protein-DNA complex assembly;2.12268516289403e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.43797301481841e-05!GO:0006613;cotranslational protein targeting to membrane;2.51484791205293e-05!GO:0001558;regulation of cell growth;2.54170827573043e-05!GO:0003697;single-stranded DNA binding;2.86006706034406e-05!GO:0006606;protein import into nucleus;3.2268918767333e-05!GO:0030133;transport vesicle;3.57623162891637e-05!GO:0000245;spliceosome assembly;3.89062418175809e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.55050484240984e-05!GO:0030029;actin filament-based process;5.2007709368071e-05!GO:0005798;Golgi-associated vesicle;6.00711898905519e-05!GO:0005643;nuclear pore;6.44594785610352e-05!GO:0007243;protein kinase cascade;6.52292828874718e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;7.70712008257365e-05!GO:0030867;rough endoplasmic reticulum membrane;8.06276093963222e-05!GO:0022402;cell cycle process;0.000103103953386527!GO:0005667;transcription factor complex;0.000115150681507054!GO:0033116;ER-Golgi intermediate compartment membrane;0.000117369642727339!GO:0032561;guanyl ribonucleotide binding;0.000130293614445459!GO:0019001;guanyl nucleotide binding;0.000130293614445459!GO:0006364;rRNA processing;0.000130418908084436!GO:0048522;positive regulation of cellular process;0.000137754589752362!GO:0006281;DNA repair;0.000141490813775393!GO:0003714;transcription corepressor activity;0.000149914921252084!GO:0016072;rRNA metabolic process;0.000155035238692463!GO:0032446;protein modification by small protein conjugation;0.000163676505485595!GO:0006323;DNA packaging;0.000167959528149384!GO:0009719;response to endogenous stimulus;0.000182622046403841!GO:0000151;ubiquitin ligase complex;0.00020011088096984!GO:0005769;early endosome;0.00020252202799048!GO:0016567;protein ubiquitination;0.000213813072334773!GO:0003713;transcription coactivator activity;0.00021391037753411!GO:0016563;transcription activator activity;0.000232395382078903!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000240825143624953!GO:0019867;outer membrane;0.000242706345428708!GO:0003724;RNA helicase activity;0.000262448942834198!GO:0045454;cell redox homeostasis;0.000267442780779034!GO:0046474;glycerophospholipid biosynthetic process;0.000292182088560794!GO:0031324;negative regulation of cellular metabolic process;0.000312179620325631!GO:0008250;oligosaccharyl transferase complex;0.000312179620325631!GO:0046930;pore complex;0.000312179620325631!GO:0006612;protein targeting to membrane;0.000319883786432084!GO:0005905;coated pit;0.000352224205909034!GO:0000314;organellar small ribosomal subunit;0.00035892653683225!GO:0005763;mitochondrial small ribosomal subunit;0.00035892653683225!GO:0051427;hormone receptor binding;0.000367669222212658!GO:0004576;oligosaccharyl transferase activity;0.000382802386794227!GO:0031968;organelle outer membrane;0.000385674531309673!GO:0001726;ruffle;0.000414324442249638!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000445066983697389!GO:0030663;COPI coated vesicle membrane;0.000445066983697389!GO:0030126;COPI vesicle coat;0.000445066983697389!GO:0005048;signal sequence binding;0.000446260720751067!GO:0005791;rough endoplasmic reticulum;0.000447975546814669!GO:0016564;transcription repressor activity;0.000523025137163575!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000539884468851113!GO:0016740;transferase activity;0.000565233888667126!GO:0043021;ribonucleoprotein binding;0.000566828217711576!GO:0022890;inorganic cation transmembrane transporter activity;0.000604010185959609!GO:0016779;nucleotidyltransferase activity;0.000621395879016375!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000653939092119027!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000662530946846999!GO:0035257;nuclear hormone receptor binding;0.000708064522694883!GO:0006333;chromatin assembly or disassembly;0.000710444864721806!GO:0005885;Arp2/3 protein complex;0.000745736750788517!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000750411769308667!GO:0015399;primary active transmembrane transporter activity;0.000750411769308667!GO:0006950;response to stress;0.000752048673535587!GO:0006979;response to oxidative stress;0.000752048673535587!GO:0006403;RNA localization;0.000783226163773549!GO:0018196;peptidyl-asparagine modification;0.000826323003398777!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000826323003398777!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000862136300116719!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000869274144462444!GO:0005741;mitochondrial outer membrane;0.000869920506887751!GO:0050657;nucleic acid transport;0.000875281016015966!GO:0051236;establishment of RNA localization;0.000875281016015966!GO:0050658;RNA transport;0.000875281016015966!GO:0016044;membrane organization and biogenesis;0.000879894199656397!GO:0050794;regulation of cellular process;0.000882731214961577!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000882731214961577!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000956387192435807!GO:0009892;negative regulation of metabolic process;0.000983726448603013!GO:0051920;peroxiredoxin activity;0.00100137199962496!GO:0008092;cytoskeletal protein binding;0.0010299017524711!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010801388582402!GO:0019843;rRNA binding;0.00120820251499208!GO:0006891;intra-Golgi vesicle-mediated transport;0.00120820251499208!GO:0065009;regulation of a molecular function;0.00146414129921714!GO:0005774;vacuolar membrane;0.00149935085075352!GO:0046489;phosphoinositide biosynthetic process;0.00153630399028668!GO:0006334;nucleosome assembly;0.00155285850319269!GO:0009165;nucleotide biosynthetic process;0.00159242978346326!GO:0006118;electron transport;0.00171367224431611!GO:0040008;regulation of growth;0.00191273617181824!GO:0048518;positive regulation of biological process;0.00192955385119342!GO:0000278;mitotic cell cycle;0.00195910380656946!GO:0030137;COPI-coated vesicle;0.00195910380656946!GO:0003690;double-stranded DNA binding;0.00205982875841409!GO:0006818;hydrogen transport;0.00217580057496484!GO:0043681;protein import into mitochondrion;0.00218097017096572!GO:0030027;lamellipodium;0.00218097017096572!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00219908931295983!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00219908931295983!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00219908931295983!GO:0015992;proton transport;0.00224974547296775!GO:0030132;clathrin coat of coated pit;0.00238156957689463!GO:0008186;RNA-dependent ATPase activity;0.00238156957689463!GO:0016197;endosome transport;0.0024440009399164!GO:0051276;chromosome organization and biogenesis;0.00246241381344789!GO:0031902;late endosome membrane;0.00257272105336727!GO:0006793;phosphorus metabolic process;0.002629393029615!GO:0006796;phosphate metabolic process;0.002629393029615!GO:0009967;positive regulation of signal transduction;0.002669198980554!GO:0046467;membrane lipid biosynthetic process;0.00268891440278801!GO:0046483;heterocycle metabolic process;0.00274520669076336!GO:0004177;aminopeptidase activity;0.00279197959016179!GO:0051287;NAD binding;0.00279197959016179!GO:0008154;actin polymerization and/or depolymerization;0.00303107957163633!GO:0008610;lipid biosynthetic process;0.00334702865646209!GO:0000785;chromatin;0.0034814934599601!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00368363533516101!GO:0006509;membrane protein ectodomain proteolysis;0.00380241231091263!GO:0033619;membrane protein proteolysis;0.00380241231091263!GO:0048500;signal recognition particle;0.00394120314333629!GO:0044437;vacuolar part;0.00397473001603778!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00405273215637838!GO:0050789;regulation of biological process;0.00413046276995377!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00430451326250771!GO:0031497;chromatin assembly;0.00432073207939911!GO:0043284;biopolymer biosynthetic process;0.00432128911395643!GO:0016481;negative regulation of transcription;0.00433327273014455!GO:0016568;chromatin modification;0.00438390848805611!GO:0005813;centrosome;0.00464802176972869!GO:0019752;carboxylic acid metabolic process;0.00468794338071384!GO:0016310;phosphorylation;0.00468899386377134!GO:0030176;integral to endoplasmic reticulum membrane;0.00499698538090737!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00501097344346712!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00519037385108268!GO:0015002;heme-copper terminal oxidase activity;0.00519037385108268!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00519037385108268!GO:0004129;cytochrome-c oxidase activity;0.00519037385108268!GO:0006082;organic acid metabolic process;0.00521599713353636!GO:0007050;cell cycle arrest;0.00521599713353636!GO:0030127;COPII vesicle coat;0.00521599713353636!GO:0012507;ER to Golgi transport vesicle membrane;0.00521599713353636!GO:0005100;Rho GTPase activator activity;0.00539002481899825!GO:0006414;translational elongation;0.00540641244118391!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00541497828888334!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00564578327992514!GO:0043623;cellular protein complex assembly;0.0058103102428223!GO:0004004;ATP-dependent RNA helicase activity;0.0059480452482709!GO:0005765;lysosomal membrane;0.00596212489833295!GO:0006626;protein targeting to mitochondrion;0.00599142405598033!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00615485396437468!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00615485396437468!GO:0003729;mRNA binding;0.00645933495988559!GO:0003899;DNA-directed RNA polymerase activity;0.00648684278794143!GO:0030658;transport vesicle membrane;0.00699408408619573!GO:0043492;ATPase activity, coupled to movement of substances;0.00709908350176475!GO:0051540;metal cluster binding;0.00711130150740314!GO:0051536;iron-sulfur cluster binding;0.00711130150740314!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00711130150740314!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00711130150740314!GO:0006740;NADPH regeneration;0.00732036118922625!GO:0006098;pentose-phosphate shunt;0.00732036118922625!GO:0030041;actin filament polymerization;0.00757959323721711!GO:0019899;enzyme binding;0.0077105720720072!GO:0031072;heat shock protein binding;0.00778231547592094!GO:0051028;mRNA transport;0.00779397207809196!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00790459220297018!GO:0045047;protein targeting to ER;0.00790459220297018!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00794639067291878!GO:0030521;androgen receptor signaling pathway;0.00800073400825616!GO:0007033;vacuole organization and biogenesis;0.00836916599156782!GO:0006260;DNA replication;0.00839755160469692!GO:0048471;perinuclear region of cytoplasm;0.00848789264245179!GO:0050662;coenzyme binding;0.00875711802237182!GO:0006650;glycerophospholipid metabolic process;0.00875711802237182!GO:0007010;cytoskeleton organization and biogenesis;0.00900716695912136!GO:0033673;negative regulation of kinase activity;0.00941835801138385!GO:0006469;negative regulation of protein kinase activity;0.00941835801138385!GO:0007006;mitochondrial membrane organization and biogenesis;0.00941835801138385!GO:0048468;cell development;0.00951056781004842!GO:0006007;glucose catabolic process;0.0096992028979397!GO:0007040;lysosome organization and biogenesis;0.00970360707351529!GO:0006693;prostaglandin metabolic process;0.00977382482177879!GO:0006692;prostanoid metabolic process;0.00977382482177879!GO:0005815;microtubule organizing center;0.00984672743369453!GO:0030134;ER to Golgi transport vesicle;0.0100383788944135!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0100383788944135!GO:0008047;enzyme activator activity;0.0103404141233996!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0105477273192272!GO:0006497;protein amino acid lipidation;0.01054872996472!GO:0016408;C-acyltransferase activity;0.0108021402436321!GO:0008632;apoptotic program;0.0110789427628457!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0113306761379422!GO:0008312;7S RNA binding;0.0115599176204423!GO:0043488;regulation of mRNA stability;0.0116998747811633!GO:0043487;regulation of RNA stability;0.0116998747811633!GO:0016126;sterol biosynthetic process;0.0120900468687155!GO:0005869;dynactin complex;0.0123094649049085!GO:0051348;negative regulation of transferase activity;0.0124126171456452!GO:0030118;clathrin coat;0.0126878934351456!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0127871667733546!GO:0015630;microtubule cytoskeleton;0.0128380795139589!GO:0006839;mitochondrial transport;0.0131672255790028!GO:0042158;lipoprotein biosynthetic process;0.0131699873526334!GO:0006352;transcription initiation;0.0131870464402401!GO:0051128;regulation of cellular component organization and biogenesis;0.0134937163075733!GO:0051087;chaperone binding;0.0135922503585705!GO:0017166;vinculin binding;0.0139978115412162!GO:0005586;collagen type III;0.0141700451951822!GO:0042802;identical protein binding;0.0143017198415556!GO:0008180;signalosome;0.0143017198415556!GO:0016860;intramolecular oxidoreductase activity;0.0143589737046672!GO:0006383;transcription from RNA polymerase III promoter;0.0145189153979152!GO:0005694;chromosome;0.0147315135868577!GO:0051252;regulation of RNA metabolic process;0.0147819744605059!GO:0006778;porphyrin metabolic process;0.0147819744605059!GO:0033013;tetrapyrrole metabolic process;0.0147819744605059!GO:0005975;carbohydrate metabolic process;0.0147819744605059!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0148686264840725!GO:0016251;general RNA polymerase II transcription factor activity;0.0150036666358461!GO:0006354;RNA elongation;0.0159205363261539!GO:0006402;mRNA catabolic process;0.0160749394509268!GO:0030660;Golgi-associated vesicle membrane;0.0165102543200542!GO:0015629;actin cytoskeleton;0.0165102543200542!GO:0031529;ruffle organization and biogenesis;0.0165495270699517!GO:0031543;peptidyl-proline dioxygenase activity;0.0167444136521236!GO:0048487;beta-tubulin binding;0.0168528764656688!GO:0035035;histone acetyltransferase binding;0.0170014069406817!GO:0035258;steroid hormone receptor binding;0.0176146335782227!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0179727554372032!GO:0033043;regulation of organelle organization and biogenesis;0.0179727554372032!GO:0044420;extracellular matrix part;0.0179917318123787!GO:0006506;GPI anchor biosynthetic process;0.0180983116322176!GO:0007264;small GTPase mediated signal transduction;0.0190258301082513!GO:0003756;protein disulfide isomerase activity;0.0193658575283483!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0193658575283483!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0196626895675871!GO:0005862;muscle thin filament tropomyosin;0.0208022069329594!GO:0045893;positive regulation of transcription, DNA-dependent;0.0210521463722172!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0216049483718676!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0216470229724707!GO:0030984;kininogen binding;0.0217957595133486!GO:0004213;cathepsin B activity;0.0217957595133486!GO:0050790;regulation of catalytic activity;0.0218329254629426!GO:0045792;negative regulation of cell size;0.0218329254629426!GO:0019798;procollagen-proline dioxygenase activity;0.0219097372982881!GO:0005520;insulin-like growth factor binding;0.0224835362964542!GO:0043022;ribosome binding;0.022831366130754!GO:0051168;nuclear export;0.0229444895035937!GO:0048144;fibroblast proliferation;0.0229880859652163!GO:0048145;regulation of fibroblast proliferation;0.0229880859652163!GO:0006505;GPI anchor metabolic process;0.0230690077502108!GO:0030659;cytoplasmic vesicle membrane;0.0234294679288376!GO:0051539;4 iron, 4 sulfur cluster binding;0.023632026563074!GO:0000339;RNA cap binding;0.0237621171053869!GO:0030518;steroid hormone receptor signaling pathway;0.0238930939736958!GO:0003711;transcription elongation regulator activity;0.0238944553013933!GO:0030308;negative regulation of cell growth;0.0246383340239007!GO:0003746;translation elongation factor activity;0.0246805685615299!GO:0045941;positive regulation of transcription;0.0249125674627027!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0249125674627027!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0249125674627027!GO:0045045;secretory pathway;0.0249217326240701!GO:0008139;nuclear localization sequence binding;0.0261517277463765!GO:0007160;cell-matrix adhesion;0.0264411746508954!GO:0031901;early endosome membrane;0.0264425780725688!GO:0042168;heme metabolic process;0.0267201072708221!GO:0044427;chromosomal part;0.0272171738708797!GO:0050681;androgen receptor binding;0.0272171738708797!GO:0006897;endocytosis;0.0273097875322379!GO:0010324;membrane invagination;0.0273097875322379!GO:0031589;cell-substrate adhesion;0.0275426285624326!GO:0005583;fibrillar collagen;0.0278364496634383!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0278760811587844!GO:0005096;GTPase activator activity;0.0280538933302558!GO:0030119;AP-type membrane coat adaptor complex;0.0285065202183106!GO:0005099;Ras GTPase activator activity;0.0286882344328534!GO:0022408;negative regulation of cell-cell adhesion;0.0289678675140726!GO:0043065;positive regulation of apoptosis;0.0303197164211727!GO:0006401;RNA catabolic process;0.030329665988753!GO:0051101;regulation of DNA binding;0.030404649204171!GO:0048146;positive regulation of fibroblast proliferation;0.0304730173585292!GO:0000049;tRNA binding;0.0304730173585292!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0307468785334134!GO:0046519;sphingoid metabolic process;0.0310794968991352!GO:0050811;GABA receptor binding;0.031119419988504!GO:0006595;polyamine metabolic process;0.0311439566838116!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0311948045430701!GO:0051336;regulation of hydrolase activity;0.0315952078364036!GO:0030880;RNA polymerase complex;0.03182609535393!GO:0005996;monosaccharide metabolic process;0.0320717948214751!GO:0043433;negative regulation of transcription factor activity;0.0320717948214751!GO:0008234;cysteine-type peptidase activity;0.0321992076875738!GO:0019318;hexose metabolic process;0.0322581177402255!GO:0006672;ceramide metabolic process;0.0326492756831781!GO:0006892;post-Golgi vesicle-mediated transport;0.0326492756831781!GO:0006767;water-soluble vitamin metabolic process;0.0333344564674188!GO:0005669;transcription factor TFIID complex;0.0333344564674188!GO:0048037;cofactor binding;0.0333344564674188!GO:0006790;sulfur metabolic process;0.0333961134306528!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0333961134306528!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.033912358995826!GO:0005832;chaperonin-containing T-complex;0.0339279065166988!GO:0007034;vacuolar transport;0.034579909483659!GO:0006769;nicotinamide metabolic process;0.0350999188454744!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0352964917177726!GO:0030384;phosphoinositide metabolic process;0.0354650118723207!GO:0006779;porphyrin biosynthetic process;0.0358801693474332!GO:0033014;tetrapyrrole biosynthetic process;0.0358801693474332!GO:0007030;Golgi organization and biogenesis;0.0361253729336079!GO:0031625;ubiquitin protein ligase binding;0.0363268524572069!GO:0043068;positive regulation of programmed cell death;0.0363963274312954!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0367305997283565!GO:0003923;GPI-anchor transamidase activity;0.0367961096704002!GO:0016255;attachment of GPI anchor to protein;0.0367961096704002!GO:0042765;GPI-anchor transamidase complex;0.0367961096704002!GO:0030031;cell projection biogenesis;0.0367961096704002!GO:0030145;manganese ion binding;0.0370250570242138!GO:0000030;mannosyltransferase activity;0.0374603297177226!GO:0006739;NADP metabolic process;0.0379958457546233!GO:0016363;nuclear matrix;0.0380702540325584!GO:0000209;protein polyubiquitination;0.0383109520497104!GO:0045334;clathrin-coated endocytic vesicle;0.0387487525092309!GO:0007021;tubulin folding;0.038793959141287!GO:0016584;nucleosome positioning;0.0390939988396323!GO:0030125;clathrin vesicle coat;0.0392323062186791!GO:0030665;clathrin coated vesicle membrane;0.0392323062186791!GO:0003779;actin binding;0.0396444977644022!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0402692559805543!GO:0051059;NF-kappaB binding;0.0407559075765362!GO:0043414;biopolymer methylation;0.0408249742043618!GO:0006607;NLS-bearing substrate import into nucleus;0.0410845416651642!GO:0004300;enoyl-CoA hydratase activity;0.0412780063106012!GO:0000096;sulfur amino acid metabolic process;0.0414641047111415!GO:0009615;response to virus;0.041646184842961!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0418259033121008!GO:0010257;NADH dehydrogenase complex assembly;0.0418259033121008!GO:0033108;mitochondrial respiratory chain complex assembly;0.0418259033121008!GO:0031418;L-ascorbic acid binding;0.0421288304694272!GO:0030503;regulation of cell redox homeostasis;0.0427345057376928!GO:0001953;negative regulation of cell-matrix adhesion;0.0431421940041988!GO:0044275;cellular carbohydrate catabolic process;0.0431976486077199!GO:0032984;macromolecular complex disassembly;0.0435983883170965!GO:0004228;gelatinase A activity;0.0438318204371925!GO:0001955;blood vessel maturation;0.0438318204371925!GO:0000059;protein import into nucleus, docking;0.0440620884862109!GO:0006695;cholesterol biosynthetic process;0.0449252748916747!GO:0065007;biological regulation;0.0454666456621069!GO:0004287;prolyl oligopeptidase activity;0.0455738090121622!GO:0009225;nucleotide-sugar metabolic process;0.0456747405328283!GO:0006635;fatty acid beta-oxidation;0.0460677289221738!GO:0044433;cytoplasmic vesicle part;0.0460677289221738!GO:0030032;lamellipodium biogenesis;0.0462108441856447!GO:0030508;thiol-disulfide exchange intermediate activity;0.046435286715835!GO:0030131;clathrin adaptor complex;0.0478704463946893!GO:0001952;regulation of cell-matrix adhesion;0.0481660476816111!GO:0016272;prefoldin complex;0.0485247885329122!GO:0015036;disulfide oxidoreductase activity;0.0487920237190401!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0487920237190401!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0487920237190401!GO:0008320;protein transmembrane transporter activity;0.0487931275877177!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0494570565725004!GO:0008243;plasminogen activator activity;0.0495220769625521!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0497449889505837!GO:0006733;oxidoreduction coenzyme metabolic process;0.0498959734116777
|sample_id=11840
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bone marrow
|top_motifs=ZNF238:2.09711325808;GZF1:1.67867721581;PAX1,9:1.64101522846;MYBL2:1.60424932927;ALX4:1.52463924855;EN1,2:1.51800977226;HAND1,2:1.46727104299;RXR{A,B,G}:1.3728208922;HIF1A:1.33299326404;PAX4:1.3086156071;ATF6:1.28340685146;NR1H4:1.23918352411;EBF1:1.21549161306;SMAD1..7,9:1.18615423563;GLI1..3:1.17861285076;PDX1:1.16811731979;SRF:1.16783909613;GFI1B:1.11833798141;IRF1,2:1.09881118312;NR6A1:1.09194282713;UFEwm:1.04280883443;ZNF423:1.04154604828;TAL1_TCF{3,4,12}:1.0101231585;HOX{A4,D4}:0.981102258459;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.960554882004;FOXL1:0.958254141631;ESR1:0.956439744625;NR3C1:0.883672479022;NHLH1,2:0.865229882813;NFE2L1:0.849319110588;TP53:0.83898425276;STAT2,4,6:0.822670749235;TBP:0.816817663654;TEAD1:0.797490410249;HSF1,2:0.790792284872;NFATC1..3:0.783120254108;SPZ1:0.767129807408;PAX5:0.764581558755;TBX4,5:0.723970740647;DBP:0.718778429036;TLX1..3_NFIC{dimer}:0.686700618508;MAFB:0.671779231822;bHLH_family:0.66656351782;NKX3-1:0.640056504223;NKX2-2,8:0.614893620639;IRF7:0.601507474092;IKZF1:0.596328203331;POU3F1..4:0.561947553308;YY1:0.546713447361;BPTF:0.518162276483;TFCP2:0.502852738215;LHX3,4:0.502058609699;HLF:0.498754716132;MYFfamily:0.490502049891;AR:0.445734451362;NFE2L2:0.429111738825;ZBTB6:0.418470660166;XBP1:0.401464375991;KLF4:0.387334223255;HES1:0.380039114768;AHR_ARNT_ARNT2:0.378299475192;HOX{A5,B5}:0.368070273213;EVI1:0.36806365413;AIRE:0.356037600319;TFAP4:0.324365678575;NKX2-1,4:0.321712179678;FOXO1,3,4:0.292890573809;PPARG:0.288622797526;NKX3-2:0.280700911193;PRDM1:0.272947217527;HNF1A:0.258805920504;GTF2I:0.258075312124;ESRRA:0.238859625607;CDC5L:0.235838051145;HIC1:0.216916157151;HOXA9_MEIS1:0.179751682116;MZF1:0.179608954956;GCM1,2:0.179213398888;NANOG{mouse}:0.17428422537;FOS_FOS{B,L1}_JUN{B,D}:0.171298103288;DMAP1_NCOR{1,2}_SMARC:0.143655002712;MEF2{A,B,C,D}:0.131085185011;RFX2..5_RFXANK_RFXAP:0.113694543595;RXRA_VDR{dimer}:0.113554767209;GTF2A1,2:0.108633292599;ALX1:0.108591879262;REST:0.106607383105;HMX1:0.084808801694;BACH2:0.0765411543487;NFE2:0.0697914194581;FOSL2:0.0601447588208;LMO2:0.0504891909439;RFX1:0.0379480956981;RREB1:-0.00539168407715;SREBF1,2:-0.0239908991441;STAT1,3:-0.0248536938346;PRRX1,2:-0.0287861985496;NFIX:-0.0551758475161;HMGA1,2:-0.0604508070909;CEBPA,B_DDIT3:-0.079363779649;MED-1{core}:-0.0820853438815;RUNX1..3:-0.0898733387891;ATF5_CREB3:-0.112086078725;TFAP2B:-0.131700581109;FOXP3:-0.146376151303;TFAP2{A,C}:-0.149200602572;MTF1:-0.15015735523;NKX6-1,2:-0.16538217857;JUN:-0.172028246737;ZNF384:-0.177773328445;ZIC1..3:-0.252617170528;PATZ1:-0.257769334396;PAX6:-0.260573331241;TLX2:-0.263005081109;FOX{D1,D2}:-0.263379510193;NFKB1_REL_RELA:-0.269055026453;ELK1,4_GABP{A,B1}:-0.27163371334;MTE{core}:-0.273182070568;ONECUT1,2:-0.273499217263;MAZ:-0.274828165151;HNF4A_NR2F1,2:-0.286016658243;POU1F1:-0.29806786912;TOPORS:-0.299491171414;PAX3,7:-0.303110607987;POU6F1:-0.328472081649;SOX17:-0.359699322326;TGIF1:-0.365144756004;ZBTB16:-0.371596098645;ZNF148:-0.372119321738;PAX8:-0.37565129853;FOXD3:-0.376280851075;ZFP161:-0.389816237889;NRF1:-0.408603583044;FOXM1:-0.408632365852;SP1:-0.41426020168;ATF2:-0.418274489475;FOXP1:-0.439004857005;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.471346657967;STAT5{A,B}:-0.479369309643;SOX5:-0.485561397902;EGR1..3:-0.48885957521;HBP1_HMGB_SSRP1_UBTF:-0.508519173015;TEF:-0.512864017833;T:-0.513282127881;MYB:-0.51427872619;PAX2:-0.51605548613;CRX:-0.520736006793;GFI1:-0.526993897186;SOX2:-0.532733703515;XCPE1{core}:-0.536593759702;FOXN1:-0.556927324981;CREB1:-0.578741765272;NR5A1,2:-0.585710860403;IKZF2:-0.591309465004;ZNF143:-0.606675309215;SPI1:-0.611572772861;GATA4:-0.635567785855;ADNP_IRX_SIX_ZHX:-0.656158309122;RBPJ:-0.658077315135;LEF1_TCF7_TCF7L1,2:-0.68295798363;ETS1,2:-0.713164269461;SPIB:-0.742796574733;NKX2-3_NKX2-5:-0.749229486923;MYOD1:-0.762762072359;EP300:-0.792429243233;CDX1,2,4:-0.793280812815;ATF4:-0.80989113064;PITX1..3:-0.853970389554;POU2F1..3:-0.855872125224;ELF1,2,4:-0.870038056385;VSX1,2:-0.870843898081;RORA:-0.880792176494;E2F1..5:-0.937709970059;GATA6:-0.947077161503;FOX{I1,J2}:-0.954098768543;TFDP1:-0.959831529524;CUX2:-1.0328996939;NFIL3:-1.03391784913;SNAI1..3:-1.0445674299;OCT4_SOX2{dimer}:-1.05102162068;POU5F1:-1.09713910527;NANOG:-1.10655151972;ZEB1:-1.12663882943;NFY{A,B,C}:-1.153167949;SOX{8,9,10}:-1.1558873105;FOX{F1,F2,J1}:-1.18772264913;FOXQ1:-1.22076875853;PBX1:-1.24625176307;FOXA2:-1.26027819112;BREu{core}:-1.28205344696;ARID5B:-1.3043658921;HOX{A6,A7,B6,B7}:-2.09399797047
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11840-124H4;search_select_hide=table117:FF:11840-124H4
}}
}}

Latest revision as of 18:23, 4 June 2020

Name:mesenchymal precursor cell - bone marrow, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13098
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005575
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13098 CAGE DRX008550 DRR009422
Accession ID Hg19

Library idBAMCTSS
CNhs13098 DRZ000847 DRZ002232
Accession ID Hg38

Library idBAMCTSS
CNhs13098 DRZ012197 DRZ013582
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.287
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0769
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.253
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.75
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0137
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.276
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.494
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.565
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.231
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.456
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.405
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.698
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.444
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.831
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.527
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.276
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.565
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.802
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13098

Jaspar motifP-value
MA0002.20.721
MA0003.10.381
MA0004.10.743
MA0006.10.436
MA0007.10.548
MA0009.10.551
MA0014.10.814
MA0017.10.547
MA0018.26.52201e-5
MA0019.10.5
MA0024.15.47011e-6
MA0025.13.2064e-6
MA0027.10.776
MA0028.10.0369
MA0029.10.898
MA0030.10.0074
MA0031.10.163
MA0035.23.42295e-4
MA0038.18.92335e-4
MA0039.20.0924
MA0040.10.966
MA0041.10.165
MA0042.10.185
MA0043.16.16037e-4
MA0046.10.211
MA0047.20.766
MA0048.10.847
MA0050.12.5588e-7
MA0051.15.44033e-7
MA0052.10.276
MA0055.10.097
MA0057.10.256
MA0058.10.846
MA0059.10.72
MA0060.12.75186e-15
MA0061.10.967
MA0062.23.1207e-9
MA0065.20.289
MA0066.10.42
MA0067.10.0828
MA0068.10.628
MA0069.10.211
MA0070.10.594
MA0071.10.768
MA0072.10.637
MA0073.10.678
MA0074.10.0879
MA0076.10.00504
MA0077.10.194
MA0078.10.622
MA0079.20.218
MA0080.25.73155e-9
MA0081.10.0149
MA0083.11.02725e-4
MA0084.10.595
MA0087.10.665
MA0088.10.496
MA0090.10.00821
MA0091.16.34861e-4
MA0092.10.317
MA0093.10.818
MA0099.20.0712
MA0100.10.243
MA0101.10.0553
MA0102.20.552
MA0103.10.00473
MA0104.20.478
MA0105.10.0354
MA0106.10.015
MA0107.10.0382
MA0108.20.104
MA0111.10.499
MA0112.26.02815e-4
MA0113.10.187
MA0114.10.481
MA0115.10.606
MA0116.10.00632
MA0117.10.479
MA0119.10.0869
MA0122.10.994
MA0124.10.739
MA0125.10.453
MA0131.10.446
MA0135.10.7
MA0136.11.3593e-8
MA0137.20.0801
MA0138.20.93
MA0139.10.33
MA0140.10.0389
MA0141.10.0688
MA0142.10.113
MA0143.10.0323
MA0144.10.123
MA0145.10.141
MA0146.10.77
MA0147.10.644
MA0148.10.207
MA0149.10.135
MA0150.10.665
MA0152.10.00859
MA0153.10.111
MA0154.10.169
MA0155.10.561
MA0156.13.36793e-9
MA0157.10.843
MA0159.10.36
MA0160.10.945
MA0162.10.173
MA0163.11.75249e-4
MA0164.10.35
MA0258.10.244
MA0259.10.842



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13098

Novel motifP-value
10.328
100.281
1000.564
1010.792
1020.0404
1030.0178
1040.685
1050.0688
1060.279
1070.104
1080.283
1090.626
110.386
1100.319
1110.7
1120.306
1130.137
1140.0111
1150.201
1160.138
1170.933
1180.668
1190.327
120.575
1200.187
1210.629
1220.0115
1230.17
1240.49
1250.782
1260.777
1270.648
1280.485
1290.566
130.736
1300.182
1310.419
1320.296
1330.678
1340.203
1350.966
1360.734
1370.887
1380.67
1390.578
140.507
1400.341
1410.221
1420.301
1430.745
1440.181
1450.329
1460.827
1470.116
1480.331
1490.16
150.605
1500.432
1510.487
1520.132
1530.148
1540.846
1550.0715
1560.0568
1570.763
1580.00636
1590.229
160.0214
1600.329
1610.797
1620.423
1630.648
1640.072
1650.502
1660.00537
1670.526
1680.118
1690.014
170.382
180.0948
190.00768
20.332
200.237
210.0463
220.149
230.0324
240.908
250.652
260.847
270.402
280.303
290.113
30.126
300.831
310.446
325.57233e-9
330.546
340.687
350.439
360.14
370.0349
380.81
390.0363
40.0191
400.23
410.321
420.817
430.173
440.613
450.772
460.134
470.915
480.942
490.683
50.491
500.395
510.69
520.49
530.402
540.983
550.193
560.652
570.975
580.7
590.0384
60.0268
600.371
610.633
620.318
630.0525
640.866
650.195
660.0863
670.279
680.771
690.488
70.563
700.0119
710.0741
720.454
730.065
740.209
750.373
760.764
770.0373
780.224
794.70574e-4
80.0566
800.373
810.5
820.095
830.804
840.348
850.259
860.35
870.418
880.362
890.00999
90.15
900.29
910.55
920.036
930.583
940.566
950.928
960.847
970.507
980.938
990.015



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13098


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000269 (human mesenchymal precursor cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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