CL:0002540

Name:	mesenchymal stem cell of the bone marrow
Namespace:	FANTOM
Definition:	"A mesenchymal stem cell that is part of the bone marrow." [GOC:tfm]
Created by:	tmeehan
Creation date:	2011-02-28T01:47:47Z

Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	CL:0000134(mesenchymal cell),CL:0002092(bone marrow cell)
part_of:	UBERON:0002371(bone marrow)

Children

is a:	FF:0000019 (canine mesenchymal stem cell),FF:0000035 (chicken mesenchymal stem cell),FF:0000149 (rat mesenchymal bone cell)
derives from:	FF:0000097 (human mesenchymal stem cell of bone marrow sample),FF:0000112 (mouse mesenchymal stem cell of bone marrow sample),FF:0000269 (human mesenchymal precursor cell of bone marrow sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

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Human (Homo sapiens)

• 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
• 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
• 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
• 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
• 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
• 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
• 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
• 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
• 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
• 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)

... further results Mouse (Mus musculus)

• 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
• 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
• 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
• 11370-118A2 (Canine Mesenchymal stem cells - bone marrow derived, donor2)
• 11373-118A5 (Rat Mesenchymal stem cells - bone marrow derived, donor2)
• 11442-118I2 (Canine Mesenchymal stem cells - bone marrow derived, donor3)
• 11445-118I5 (Rat Mesenchymal stem cells - bone marrow derived, donor3)
• 11464-119B6 (Mesenchymal Stem Cells - bone marrow, donor4)
• 11536-120A6 (Mesenchymal Stem Cells - bone marrow, donor1)
• 11616-122A5 (Mesenchymal Stem Cells - bone marrow, donor2)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002540 (mesenchymal stem cell of the bone marrow), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
1.33e-65	FFCP PHASE2:Mm9::chr6:48992901..48992908,-	p@chr6:48992901..48992908, -
1.33e-65	FFCP PHASE1:Mm9::chr6:48992901..48992908,-	p@chr6:48992901..48992908, -
6.04e-65	FFCP PHASE2:Mm9::chr7:53967438..53967455,+	p@chr7:53967438..53967455, +
6.04e-65	FFCP PHASE1:Mm9::chr7:53967438..53967455,+	p@chr7:53967438..53967455, +
4.9e-53	FFCP PHASE2:Mm9::chr6:49001848..49001855,+	p@chr6:49001848..49001855, +
4.9e-53	FFCP PHASE1:Mm9::chr6:49001848..49001855,+	p@chr6:49001848..49001855, +
2.47e-52	FFCP PHASE1:Mm9::chr8:125950637..125950639,-	p@chr8:125950637..125950639, -
2.47e-52	FFCP PHASE2:Mm9::chr8:125950637..125950639,-	p@chr8:125950637..125950639, -
3.69e-52	FFCP PHASE1:Mm9::chr11:8475592..8475595,-	p@chr11:8475592..8475595, -
3.69e-52	FFCP PHASE2:Mm9::chr11:8475592..8475595,-	p@chr11:8475592..8475595, -
5.51e-52	FFCP PHASE2:Mm9::chr1:122401450..122401455,-	p3@Marco
5.51e-52	FFCP PHASE1:Mm9::chr8:125956453..125956462,-	p@chr8:125956453..125956462, -
5.51e-52	FFCP PHASE1:Mm9::chr1:122401450..122401455,-	p3@Marco
5.51e-52	FFCP PHASE2:Mm9::chr8:125956453..125956462,-	p@chr8:125956453..125956462, -
9.76e-45	FFCP PHASE2:Hg19::chr7:7222449..7222458,+	p10@C1GALT1
9.76e-45	FFCP PHASE1:Hg19::chr7:7222449..7222458,+	p10@C1GALT1
1.18e-44	FFCP PHASE2:Mm9::chr6:48997291..48997298,+	p@chr6:48997291..48997298, +
1.18e-44	FFCP PHASE2:Mm9::chr6:48995347..48995356,+	p@chr6:48995347..48995356, +
1.18e-44	FFCP PHASE2:Mm9::chr4:136452258..136452269,-	p@chr4:136452258..136452269, -
1.18e-44	FFCP PHASE1:Mm9::chr4:136452258..136452269,-	p@chr4:136452258..136452269, -
1.18e-44	FFCP PHASE1:Mm9::chr6:48997291..48997298,+	p@chr6:48997291..48997298, +
1.18e-44	FFCP PHASE2:Mm9::chr6:48995364..48995370,+	p@chr6:48995364..48995370, +
1.18e-44	FFCP PHASE1:Mm9::chr6:48995347..48995356,+	p@chr6:48995347..48995356, +
1.18e-44	FFCP PHASE1:Mm9::chr6:48997996..48998006,-	p@chr6:48997996..48998006, -
1.18e-44	FFCP PHASE1:Mm9::chr6:48995364..48995370,+	p@chr6:48995364..48995370, +
1.18e-44	FFCP PHASE2:Mm9::chr6:48997996..48998006,-	p@chr6:48997996..48998006, -
1.66e-44	FFCP PHASE2:Mm9::chr6:48997804..48997812,+	p@chr6:48997804..48997812, +
1.66e-44	FFCP PHASE1:Mm9::chr6:48997804..48997812,+	p@chr6:48997804..48997812, +
3.27e-44	FFCP PHASE1:Mm9::chr6:48995448..48995454,+	p@chr6:48995448..48995454, +
3.27e-44	FFCP PHASE2:Mm9::chr6:48995448..48995454,+	p@chr6:48995448..48995454, +
6.41e-44	FFCP PHASE1:Mm9::chr8:125951622..125951629,-	p@chr8:125951622..125951629, -
6.41e-44	FFCP PHASE1:Mm9::chr11:69479320..69479327,-	p@chr11:69479320..69479327, -
6.41e-44	FFCP PHASE2:Mm9::chr8:125956513..125956519,-	p@chr8:125956513..125956519, -
6.41e-44	FFCP PHASE2:Mm9::chr11:69479320..69479327,-	p@chr11:69479320..69479327, -
6.41e-44	FFCP PHASE2:Mm9::chr8:125951622..125951629,-	p@chr8:125951622..125951629, -
6.41e-44	FFCP PHASE1:Mm9::chr8:125956513..125956519,-	p@chr8:125956513..125956519, -
8.97e-44	FFCP PHASE1:Mm9::chr1:173159866..173159877,-	p@chr1:173159866..173159877, -
8.97e-44	FFCP PHASE1:Mm9::chr8:125952972..125952981,-	p@chr8:125952972..125952981, -
8.97e-44	FFCP PHASE2:Mm9::chr2:157944705..157944714,-	p@chr2:157944705..157944714, -
8.97e-44	FFCP PHASE1:Mm9::chr10:116715054..116715061,-	p@chr10:116715054..116715061, -
8.97e-44	FFCP PHASE2:Mm9::chr8:125956179..125956189,-	p@chr8:125956179..125956189, -
8.97e-44	FFCP PHASE1:Mm9::chr2:157944705..157944714,-	p@chr2:157944705..157944714, -
8.97e-44	FFCP PHASE2:Mm9::chr10:116715054..116715061,-	p@chr10:116715054..116715061, -
8.97e-44	FFCP PHASE2:Mm9::chr8:125952972..125952981,-	p@chr8:125952972..125952981, -
8.97e-44	FFCP PHASE1:Mm9::chr8:125956179..125956189,-	p@chr8:125956179..125956189, -
8.97e-44	FFCP PHASE2:Mm9::chr1:173159866..173159877,-	p@chr1:173159866..173159877, -
1.25e-43	FFCP PHASE1:Mm9::chr17:57501115..57501124,+	p@chr17:57501115..57501124, +
1.25e-43	FFCP PHASE1:Mm9::chr8:125953346..125953349,-	p@chr8:125953346..125953349, -
1.25e-43	FFCP PHASE2:Mm9::chr8:125953346..125953349,-	p@chr8:125953346..125953349, -
1.25e-43	FFCP PHASE2:Mm9::chr17:57501115..57501124,+	p@chr17:57501115..57501124, +
1.75e-43	FFCP PHASE1:Mm9::chr6:122805870..122805874,-	p@chr6:122805870..122805874, -
1.75e-43	FFCP PHASE2:Mm9::chr6:122805870..122805874,-	p@chr6:122805870..122805874, -
1.7e-39	FFCP PHASE1:Mm9::chr8:124830874..124830875,+	p@chr8:124830874..124830875, +
1.7e-39	FFCP PHASE2:Mm9::chr8:124830874..124830875,+	p@chr8:124830874..124830875, +
4.15e-39	FFCP PHASE2:Mm9::chr10:93014574..93014575,+	p@chr10:93014574..93014575, +
4.15e-39	FFCP PHASE1:Mm9::chr10:93014574..93014575,+	p@chr10:93014574..93014575, +
1.17e-38	FFCP PHASE2:Mm9::chr6:48992877..48992890,-	p@chr6:48992877..48992890, -
1.17e-38	FFCP PHASE1:Mm9::chr6:48992765..48992800,+	p@chr6:48992765..48992800, +
1.17e-38	FFCP PHASE1:Mm9::chr6:48992877..48992890,-	p@chr6:48992877..48992890, -
1.17e-38	FFCP PHASE2:Mm9::chr6:48992765..48992800,+	p@chr6:48992765..48992800, +
2.79e-38	FFCP PHASE2:Mm9::chr8:125952310..125952320,+	p@chr8:125952310..125952320, +
2.79e-38	FFCP PHASE1:Mm9::chr8:125952310..125952320,+	p@chr8:125952310..125952320, +
3.73e-38	FFCP PHASE2:Mm9::chr8:125951545..125951559,-	p@chr8:125951545..125951559, -
3.73e-38	FFCP PHASE1:Mm9::chr19:3941548..3941557,+	p@chr19:3941548..3941557, +
3.73e-38	FFCP PHASE1:Mm9::chr8:125952002..125952012,-	p@chr8:125952002..125952012, -
3.73e-38	FFCP PHASE2:Mm9::chr19:3941548..3941557,+	p@chr19:3941548..3941557, +
3.73e-38	FFCP PHASE2:Mm9::chr8:125952002..125952012,-	p@chr8:125952002..125952012, -
3.73e-38	FFCP PHASE1:Mm9::chr8:125951545..125951559,-	p@chr8:125951545..125951559, -
6.64e-38	FFCP PHASE1:Mm9::chr6:82983194..82983205,-	p@chr6:82983194..82983205, -
6.64e-38	FFCP PHASE1:Mm9::chr8:125956332..125956339,-	p@chr8:125956332..125956339, -
6.64e-38	FFCP PHASE2:Mm9::chr6:82983194..82983205,-	p@chr6:82983194..82983205, -
6.64e-38	FFCP PHASE1:Mm9::chr8:125951458..125951466,-	p@chr8:125951458..125951466, -
6.64e-38	FFCP PHASE2:Mm9::chr8:125956332..125956339,-	p@chr8:125956332..125956339, -
6.64e-38	FFCP PHASE2:Mm9::chr8:125951458..125951466,-	p@chr8:125951458..125951466, -
8.86e-38	FFCP PHASE1:Mm9::chr17:45733632..45733648,-	p@chr17:45733632..45733648, -
8.86e-38	FFCP PHASE2:Mm9::chr17:45733632..45733648,-	p@chr17:45733632..45733648, -
3.67e-34	FFCP PHASE2:Mm9::chr3:87067625..87067636,-	p2@Fcrls
3.67e-34	FFCP PHASE1:Mm9::chr4:136452194..136452198,-	p@chr4:136452194..136452198, -
3.67e-34	FFCP PHASE1:Mm9::chr3:87067576..87067584,-	p3@Fcrls
3.67e-34	FFCP PHASE1:Mm9::chr6:48997958..48997979,-	p@chr6:48997958..48997979, -
3.67e-34	FFCP PHASE1:Mm9::chr6:49006588..49006597,+	p@chr6:49006588..49006597, +
3.67e-34	FFCP PHASE1:Mm9::chrX:20505898..20505909,-	p@chrX:20505898..20505909, -
3.67e-34	FFCP PHASE2:Mm9::chr6:48992884..48992893,+	p@chr6:48992884..48992893, +
3.67e-34	FFCP PHASE1:Mm9::chr3:87067625..87067636,-	p2@Fcrls
3.67e-34	FFCP PHASE2:Mm9::chr6:48997958..48997979,-	p@chr6:48997958..48997979, -
3.67e-34	FFCP PHASE2:Mm9::chr6:49006588..49006597,+	p@chr6:49006588..49006597, +
3.67e-34	FFCP PHASE1:Mm9::chr6:48992884..48992893,+	p@chr6:48992884..48992893, +
3.67e-34	FFCP PHASE2:Mm9::chr4:136436677..136436688,-	p@chr4:136436677..136436688, -
3.67e-34	FFCP PHASE2:Mm9::chr3:87067576..87067584,-	p3@Fcrls
3.67e-34	FFCP PHASE2:Mm9::chrX:20505898..20505909,-	p@chrX:20505898..20505909, -
3.67e-34	FFCP PHASE2:Mm9::chr4:136452194..136452198,-	p@chr4:136452194..136452198, -
3.67e-34	FFCP PHASE1:Mm9::chr4:136436677..136436688,-	p@chr4:136436677..136436688, -
4.27e-34	FFCP PHASE1:Hg19::chr20:49963208..49963211,-	p@chr20:49963208..49963211, -
4.27e-34	FFCP PHASE2:Hg19::chr20:49963208..49963211,-	p@chr20:49963208..49963211, -
5.98e-34	FFCP PHASE1:Hg19::chrX:11455926..11455931,+	p@chrX:11455926..11455931, +
5.98e-34	FFCP PHASE2:Hg19::chrX:11455926..11455931,+	p@chrX:11455926..11455931, +
6.12e-34	FFCP PHASE1:Mm9::chr5:24046758..24046768,-	p3@Asb10
6.12e-34	FFCP PHASE1:Mm9::chr11:69478859..69478867,-	p@chr11:69478859..69478867, -
6.12e-34	FFCP PHASE2:Mm9::chr5:24046758..24046768,-	p3@Asb10
6.12e-34	FFCP PHASE2:Mm9::chr11:69478859..69478867,-	p@chr11:69478859..69478867, -

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