FF:10198-103E9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005041 | ||
|accession_numbers=CAGE;DRX008657;DRR009529;DRZ000954;DRZ002339;DRZ012304;DRZ013689 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002110,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010198 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/gall%2520bladder%252c%2520adult.CNhs12848.10198-103E9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10198-103E9 | |id=FF:10198-103E9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010198 | ||
|is_obsolete= | |||
|library_id=CNhs12848 | |||
|library_id_phase_based=2:CNhs12848 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10198 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10198 | |||
|name=gall bladder, adult | |name=gall bladder, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12848,LSID973,release012,COMPLETED | |profile_hcage=CNhs12848,LSID973,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number=R1234118-10 | |rna_catalog_number=R1234118-10 | ||
| Line 54: | Line 76: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type= | |rna_sample_type= | ||
|rna_tube_id= | |rna_tube_id=1.03E+11 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age=57 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.14091590712436e-260!GO:0005737;cytoplasm;1.73056952768043e-178!GO:0044444;cytoplasmic part;1.81642360681078e-121!GO:0043226;organelle;6.04668766275097e-110!GO:0043229;intracellular organelle;1.00941035871375e-109!GO:0043231;intracellular membrane-bound organelle;4.4152676910717e-106!GO:0043227;membrane-bound organelle;4.4152676910717e-106!GO:0005515;protein binding;1.53715223113253e-89!GO:0044422;organelle part;2.29754127963714e-72!GO:0044446;intracellular organelle part;4.26273808978159e-71!GO:0032991;macromolecular complex;4.62594837565098e-51!GO:0044238;primary metabolic process;4.6478208013911e-46!GO:0044237;cellular metabolic process;7.04886675950258e-46!GO:0031090;organelle membrane;2.39466770008997e-44!GO:0019538;protein metabolic process;4.05030319208325e-42!GO:0030529;ribonucleoprotein complex;9.23849789152264e-42!GO:0005739;mitochondrion;1.57923491292091e-41!GO:0043170;macromolecule metabolic process;1.18248582548576e-40!GO:0016043;cellular component organization and biogenesis;1.7416733778197e-38!GO:0044260;cellular macromolecule metabolic process;2.28626374393744e-36!GO:0003723;RNA binding;5.8837332021769e-36!GO:0044267;cellular protein metabolic process;1.34194603082643e-35!GO:0043233;organelle lumen;1.72129699499038e-35!GO:0031974;membrane-enclosed lumen;1.72129699499038e-35!GO:0033036;macromolecule localization;1.81699947344043e-35!GO:0015031;protein transport;6.24665741312309e-34!GO:0008104;protein localization;2.38010895362741e-33!GO:0045184;establishment of protein localization;5.86423675147624e-33!GO:0005829;cytosol;1.48919102001759e-31!GO:0044428;nuclear part;3.41805218839092e-29!GO:0044429;mitochondrial part;1.40538564017249e-28!GO:0005840;ribosome;9.51091786918705e-28!GO:0043234;protein complex;4.18123045075374e-27!GO:0031967;organelle envelope;4.4876902993544e-27!GO:0031975;envelope;6.48507409231462e-27!GO:0009059;macromolecule biosynthetic process;1.15815304769417e-26!GO:0009058;biosynthetic process;7.44435331563195e-26!GO:0006412;translation;2.1786985649684e-25!GO:0046907;intracellular transport;3.21619406845166e-25!GO:0003735;structural constituent of ribosome;1.6288204939477e-24!GO:0006886;intracellular protein transport;4.05537508710166e-23!GO:0005634;nucleus;2.05292604625866e-22!GO:0033279;ribosomal subunit;3.12933506212396e-22!GO:0065003;macromolecular complex assembly;4.43180361148288e-22!GO:0005783;endoplasmic reticulum;7.84088691266698e-22!GO:0012505;endomembrane system;1.0626376081941e-20!GO:0005740;mitochondrial envelope;1.22318851450441e-20!GO:0005794;Golgi apparatus;1.43956420465562e-20!GO:0016071;mRNA metabolic process;1.71904656903676e-20!GO:0044249;cellular biosynthetic process;2.68218963474162e-20!GO:0022607;cellular component assembly;4.83136254898998e-20!GO:0019866;organelle inner membrane;1.25842334918521e-19!GO:0031966;mitochondrial membrane;1.33640341956868e-19!GO:0008134;transcription factor binding;1.77011702583036e-19!GO:0008380;RNA splicing;8.14791837448743e-19!GO:0048770;pigment granule;1.39726597800861e-18!GO:0042470;melanosome;1.39726597800861e-18!GO:0005743;mitochondrial inner membrane;1.53274514084549e-18!GO:0006396;RNA processing;2.64991532506867e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.01906989946093e-18!GO:0031981;nuclear lumen;9.01664317715537e-18!GO:0051641;cellular localization;6.48089933206195e-17!GO:0016192;vesicle-mediated transport;9.06476851678568e-17!GO:0051649;establishment of cellular localization;1.03223065585532e-16!GO:0006119;oxidative phosphorylation;1.17764578263168e-16!GO:0006397;mRNA processing;1.61564353484822e-16!GO:0043283;biopolymer metabolic process;2.16824053529316e-15!GO:0044432;endoplasmic reticulum part;3.64598131926807e-15!GO:0044445;cytosolic part;3.84470562264552e-15!GO:0048523;negative regulation of cellular process;1.08091782282855e-14!GO:0005746;mitochondrial respiratory chain;4.65583002548862e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.18985298601351e-14!GO:0006996;organelle organization and biogenesis;1.73880052262905e-13!GO:0044455;mitochondrial membrane part;3.52389296751869e-13!GO:0043412;biopolymer modification;4.58396100333125e-13!GO:0010467;gene expression;5.01689063096876e-13!GO:0050136;NADH dehydrogenase (quinone) activity;6.01773379207523e-13!GO:0003954;NADH dehydrogenase activity;6.01773379207523e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.01773379207523e-13!GO:0005681;spliceosome;8.04560481007788e-13!GO:0048519;negative regulation of biological process;1.19356739936094e-12!GO:0006464;protein modification process;1.45420909457315e-12!GO:0015935;small ribosomal subunit;1.57326601182927e-12!GO:0048193;Golgi vesicle transport;5.52952130783143e-12!GO:0044265;cellular macromolecule catabolic process;6.17984272747451e-12!GO:0012501;programmed cell death;6.91344713022782e-12!GO:0006605;protein targeting;1.09888206660179e-11!GO:0005654;nucleoplasm;1.23858786783045e-11!GO:0006915;apoptosis;1.44224149686065e-11!GO:0006457;protein folding;2.11653318553583e-11!GO:0008219;cell death;2.1426265183497e-11!GO:0016265;death;2.1426265183497e-11!GO:0003712;transcription cofactor activity;3.16943526301389e-11!GO:0000166;nucleotide binding;3.40619332428693e-11!GO:0043228;non-membrane-bound organelle;3.40619332428693e-11!GO:0043232;intracellular non-membrane-bound organelle;3.40619332428693e-11!GO:0031982;vesicle;3.907908563058e-11!GO:0031980;mitochondrial lumen;4.27481260377989e-11!GO:0005759;mitochondrial matrix;4.27481260377989e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.52807127061087e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.52807127061087e-11!GO:0031988;membrane-bound vesicle;4.97364483597873e-11!GO:0030964;NADH dehydrogenase complex (quinone);5.33313470295533e-11!GO:0045271;respiratory chain complex I;5.33313470295533e-11!GO:0005747;mitochondrial respiratory chain complex I;5.33313470295533e-11!GO:0006366;transcription from RNA polymerase II promoter;6.64565605864272e-11!GO:0005789;endoplasmic reticulum membrane;7.7776572105156e-11!GO:0044451;nucleoplasm part;7.91009286216265e-11!GO:0031410;cytoplasmic vesicle;8.41192478295466e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.60210911301105e-11!GO:0016023;cytoplasmic membrane-bound vesicle;9.28831396691449e-11!GO:0042775;organelle ATP synthesis coupled electron transport;9.67775623611214e-11!GO:0042773;ATP synthesis coupled electron transport;9.67775623611214e-11!GO:0015934;large ribosomal subunit;9.97900993839864e-11!GO:0022618;protein-RNA complex assembly;1.14326135618678e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.17192592510878e-10!GO:0006461;protein complex assembly;1.25443400721793e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.28029839997775e-10!GO:0044248;cellular catabolic process;1.38930041947593e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.38930041947593e-10!GO:0006511;ubiquitin-dependent protein catabolic process;2.27844788241458e-10!GO:0019941;modification-dependent protein catabolic process;2.27844788241458e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.27844788241458e-10!GO:0044257;cellular protein catabolic process;3.42627615608602e-10!GO:0030036;actin cytoskeleton organization and biogenesis;4.19875899085868e-10!GO:0043687;post-translational protein modification;7.0981370046364e-10!GO:0008092;cytoskeletal protein binding;7.50464267618269e-10!GO:0016874;ligase activity;9.57486879520523e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.05721967717568e-09!GO:0005793;ER-Golgi intermediate compartment;1.81250356844733e-09!GO:0009055;electron carrier activity;2.004728030956e-09!GO:0006913;nucleocytoplasmic transport;2.04127574873494e-09!GO:0043285;biopolymer catabolic process;2.66585780892805e-09!GO:0009057;macromolecule catabolic process;3.85992553019586e-09!GO:0006793;phosphorus metabolic process;4.04476518160019e-09!GO:0006796;phosphate metabolic process;4.04476518160019e-09!GO:0051169;nuclear transport;4.19538294279275e-09!GO:0008565;protein transporter activity;5.77137205500327e-09!GO:0044431;Golgi apparatus part;5.80262344035312e-09!GO:0016564;transcription repressor activity;6.68490025401251e-09!GO:0008135;translation factor activity, nucleic acid binding;8.03914209304766e-09!GO:0030029;actin filament-based process;8.74807020339593e-09!GO:0005768;endosome;9.61532271565408e-09!GO:0016462;pyrophosphatase activity;1.08579465094887e-08!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.15789480345442e-08!GO:0006512;ubiquitin cycle;1.47302695365281e-08!GO:0016817;hydrolase activity, acting on acid anhydrides;1.52742522172449e-08!GO:0030163;protein catabolic process;1.58271073623048e-08!GO:0031252;leading edge;1.59292849312574e-08!GO:0007264;small GTPase mediated signal transduction;1.84003785792117e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.10687406795556e-08!GO:0017111;nucleoside-triphosphatase activity;3.12634234631404e-08!GO:0005773;vacuole;3.12634234631404e-08!GO:0051186;cofactor metabolic process;3.18930495937153e-08!GO:0050794;regulation of cellular process;3.21600246604914e-08!GO:0051082;unfolded protein binding;8.51458988573586e-08!GO:0017038;protein import;1.04332372522931e-07!GO:0017076;purine nucleotide binding;1.18295320387957e-07!GO:0032553;ribonucleotide binding;1.33434131370584e-07!GO:0032555;purine ribonucleotide binding;1.33434131370584e-07!GO:0003779;actin binding;1.4632414120232e-07!GO:0031324;negative regulation of cellular metabolic process;1.56555693978858e-07!GO:0050789;regulation of biological process;1.57317255589602e-07!GO:0009892;negative regulation of metabolic process;1.72040061341474e-07!GO:0006446;regulation of translational initiation;1.84023100377695e-07!GO:0000323;lytic vacuole;1.99440326118348e-07!GO:0005764;lysosome;1.99440326118348e-07!GO:0016604;nuclear body;2.01770006418093e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.04344624176398e-07!GO:0016310;phosphorylation;2.07001788165666e-07!GO:0007243;protein kinase cascade;2.09653416863157e-07!GO:0019899;enzyme binding;2.32562155607369e-07!GO:0003743;translation initiation factor activity;3.42529540427556e-07!GO:0005761;mitochondrial ribosome;4.56769399205095e-07!GO:0000313;organellar ribosome;4.56769399205095e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.80657439292672e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;5.01904836666669e-07!GO:0000375;RNA splicing, via transesterification reactions;5.01904836666669e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.01904836666669e-07!GO:0008639;small protein conjugating enzyme activity;5.0483591189938e-07!GO:0003714;transcription corepressor activity;5.05635394820023e-07!GO:0005635;nuclear envelope;5.46381138565149e-07!GO:0016481;negative regulation of transcription;6.90791778011924e-07!GO:0004842;ubiquitin-protein ligase activity;6.95866425878212e-07!GO:0009060;aerobic respiration;7.71021926816312e-07!GO:0048522;positive regulation of cellular process;8.03241190884643e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.05764985445081e-07!GO:0051246;regulation of protein metabolic process;8.49851853300638e-07!GO:0042981;regulation of apoptosis;8.74059715010098e-07!GO:0006413;translational initiation;1.01569923671339e-06!GO:0045333;cellular respiration;1.075229125893e-06!GO:0016491;oxidoreductase activity;1.07701893399674e-06!GO:0043067;regulation of programmed cell death;1.07711953133591e-06!GO:0000139;Golgi membrane;1.2204719184138e-06!GO:0006732;coenzyme metabolic process;1.42608257030817e-06!GO:0048475;coated membrane;1.57895410738765e-06!GO:0030117;membrane coat;1.57895410738765e-06!GO:0016044;membrane organization and biogenesis;1.77371765885169e-06!GO:0043069;negative regulation of programmed cell death;1.78712363787347e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.01722910334929e-06!GO:0016607;nuclear speck;2.19560516602094e-06!GO:0019787;small conjugating protein ligase activity;2.44933171487433e-06!GO:0006091;generation of precursor metabolites and energy;2.49764957521597e-06!GO:0019829;cation-transporting ATPase activity;2.50932789253473e-06!GO:0005770;late endosome;2.64740292467311e-06!GO:0006606;protein import into nucleus;2.79936187888446e-06!GO:0043066;negative regulation of apoptosis;2.89625568339773e-06!GO:0009056;catabolic process;3.00284158081834e-06!GO:0031965;nuclear membrane;3.05303569365949e-06!GO:0030120;vesicle coat;3.41158845722801e-06!GO:0030662;coated vesicle membrane;3.41158845722801e-06!GO:0051170;nuclear import;3.41667859228119e-06!GO:0009966;regulation of signal transduction;3.53592284670779e-06!GO:0007242;intracellular signaling cascade;3.81895004842881e-06!GO:0048518;positive regulation of biological process;4.01257994456418e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.55082217202742e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.94115068705326e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.800935160596e-06!GO:0016563;transcription activator activity;6.52054528881726e-06!GO:0015980;energy derivation by oxidation of organic compounds;6.8088159697998e-06!GO:0005788;endoplasmic reticulum lumen;7.14721512509181e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.21335822874188e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.48459260098337e-06!GO:0006099;tricarboxylic acid cycle;8.81099422516995e-06!GO:0046356;acetyl-CoA catabolic process;8.81099422516995e-06!GO:0006916;anti-apoptosis;1.02302020488013e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.04805339539522e-05!GO:0005730;nucleolus;1.24315477200777e-05!GO:0042802;identical protein binding;1.25984426446243e-05!GO:0065007;biological regulation;1.43766730392708e-05!GO:0007265;Ras protein signal transduction;1.66858246832719e-05!GO:0016881;acid-amino acid ligase activity;1.85548834813553e-05!GO:0015986;ATP synthesis coupled proton transport;1.90058636706437e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.90058636706437e-05!GO:0051187;cofactor catabolic process;2.0022315751655e-05!GO:0016049;cell growth;2.17040704118033e-05!GO:0008361;regulation of cell size;2.72467153500287e-05!GO:0045786;negative regulation of progression through cell cycle;3.24987747824274e-05!GO:0005083;small GTPase regulator activity;3.61062739939749e-05!GO:0005525;GTP binding;3.85858926626676e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.869349553342e-05!GO:0030133;transport vesicle;4.00180429920578e-05!GO:0006084;acetyl-CoA metabolic process;4.23566091046378e-05!GO:0045259;proton-transporting ATP synthase complex;4.86174022343544e-05!GO:0003924;GTPase activity;5.51497367688278e-05!GO:0003713;transcription coactivator activity;6.0443180816844e-05!GO:0048471;perinuclear region of cytoplasm;6.45515636100055e-05!GO:0032559;adenyl ribonucleotide binding;6.53632609431311e-05!GO:0030554;adenyl nucleotide binding;6.53632609431311e-05!GO:0009109;coenzyme catabolic process;7.80291653103041e-05!GO:0045941;positive regulation of transcription;7.80291653103041e-05!GO:0005524;ATP binding;7.86762401287595e-05!GO:0044440;endosomal part;8.08553571970329e-05!GO:0010008;endosome membrane;8.08553571970329e-05!GO:0001726;ruffle;8.16216062945076e-05!GO:0030695;GTPase regulator activity;8.44415363387714e-05!GO:0045892;negative regulation of transcription, DNA-dependent;8.59175548529368e-05!GO:0045893;positive regulation of transcription, DNA-dependent;8.89800910061229e-05!GO:0005839;proteasome core complex (sensu Eukaryota);9.52441959841007e-05!GO:0005791;rough endoplasmic reticulum;9.67798287681154e-05!GO:0016469;proton-transporting two-sector ATPase complex;9.99816261129842e-05!GO:0006897;endocytosis;0.000100674571947875!GO:0010324;membrane invagination;0.000100674571947875!GO:0006259;DNA metabolic process;0.000137232162050419!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000145356510353731!GO:0007010;cytoskeleton organization and biogenesis;0.000147226107932742!GO:0005798;Golgi-associated vesicle;0.00015812017483968!GO:0006613;cotranslational protein targeting to membrane;0.000159667658710897!GO:0030532;small nuclear ribonucleoprotein complex;0.00018614600053331!GO:0051789;response to protein stimulus;0.000221315538991616!GO:0006986;response to unfolded protein;0.000221315538991616!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000251757121568866!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000251757121568866!GO:0001558;regulation of cell growth;0.000253568286443185!GO:0042623;ATPase activity, coupled;0.000272072624220063!GO:0008154;actin polymerization and/or depolymerization;0.00028279337803258!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000287009407483411!GO:0032561;guanyl ribonucleotide binding;0.000295780172460763!GO:0019001;guanyl nucleotide binding;0.000295780172460763!GO:0005905;coated pit;0.000308815224768408!GO:0030027;lamellipodium;0.00032294397624351!GO:0044262;cellular carbohydrate metabolic process;0.00033211027474454!GO:0008610;lipid biosynthetic process;0.000398016550485639!GO:0006754;ATP biosynthetic process;0.000398016550485639!GO:0006753;nucleoside phosphate metabolic process;0.000398016550485639!GO:0016887;ATPase activity;0.000400534460337582!GO:0044255;cellular lipid metabolic process;0.000435235875680452!GO:0009142;nucleoside triphosphate biosynthetic process;0.000435235875680452!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000435235875680452!GO:0009141;nucleoside triphosphate metabolic process;0.000437855187719401!GO:0008286;insulin receptor signaling pathway;0.000451298416898598!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000464466926039321!GO:0000245;spliceosome assembly;0.000464466926039321!GO:0009199;ribonucleoside triphosphate metabolic process;0.000465589796327979!GO:0019843;rRNA binding;0.000467497136716994!GO:0016197;endosome transport;0.000525326776103419!GO:0033673;negative regulation of kinase activity;0.000534656349989972!GO:0006469;negative regulation of protein kinase activity;0.000534656349989972!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000543985679650651!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000543985679650651!GO:0016740;transferase activity;0.000543985679650651!GO:0046034;ATP metabolic process;0.000552158843971412!GO:0030867;rough endoplasmic reticulum membrane;0.000560145690552828!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000577771353617569!GO:0009144;purine nucleoside triphosphate metabolic process;0.000577771353617569!GO:0032446;protein modification by small protein conjugation;0.000598566262776611!GO:0019904;protein domain specific binding;0.000610094762278548!GO:0044453;nuclear membrane part;0.000619712062621517!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000624820866046285!GO:0004298;threonine endopeptidase activity;0.000627775481142682!GO:0043566;structure-specific DNA binding;0.000644013018484443!GO:0016070;RNA metabolic process;0.000652601521480528!GO:0000151;ubiquitin ligase complex;0.000744903511098217!GO:0009150;purine ribonucleotide metabolic process;0.000764809886032853!GO:0006950;response to stress;0.000777428312021694!GO:0016567;protein ubiquitination;0.000853241335256074!GO:0006979;response to oxidative stress;0.000888903772420936!GO:0006323;DNA packaging;0.000936662033313216!GO:0006163;purine nucleotide metabolic process;0.000962311579098417!GO:0051427;hormone receptor binding;0.0010748044707437!GO:0051128;regulation of cellular component organization and biogenesis;0.0010748044707437!GO:0008654;phospholipid biosynthetic process;0.00108110914955539!GO:0005741;mitochondrial outer membrane;0.00113866360046325!GO:0048468;cell development;0.00118828006807356!GO:0009259;ribonucleotide metabolic process;0.0012073438147579!GO:0009100;glycoprotein metabolic process;0.00126013942203894!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00132095464106089!GO:0015399;primary active transmembrane transporter activity;0.00132095464106089!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00135062258705931!GO:0030118;clathrin coat;0.00137582721823548!GO:0051188;cofactor biosynthetic process;0.00140770585348722!GO:0009152;purine ribonucleotide biosynthetic process;0.00140825804357416!GO:0051348;negative regulation of transferase activity;0.00157520737784832!GO:0065009;regulation of a molecular function;0.00161775610142798!GO:0016568;chromatin modification;0.00167402797843813!GO:0022890;inorganic cation transmembrane transporter activity;0.00168315353147309!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00170741926266255!GO:0005885;Arp2/3 protein complex;0.00177770489157153!GO:0006164;purine nucleotide biosynthetic process;0.00180499146753261!GO:0006693;prostaglandin metabolic process;0.00185316549654167!GO:0006692;prostanoid metabolic process;0.00185316549654167!GO:0008047;enzyme activator activity;0.00191669368856417!GO:0031968;organelle outer membrane;0.00193775713721567!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00196008467762408!GO:0007167;enzyme linked receptor protein signaling pathway;0.00197184302933726!GO:0003697;single-stranded DNA binding;0.00203172480159369!GO:0035257;nuclear hormone receptor binding;0.00203189748693983!GO:0005048;signal sequence binding;0.00212508692202654!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00219982409048223!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00219982409048223!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00219982409048223!GO:0033116;ER-Golgi intermediate compartment membrane;0.00224727059040785!GO:0019867;outer membrane;0.00236712541819072!GO:0051920;peroxiredoxin activity;0.00249556187794046!GO:0005096;GTPase activator activity;0.00252646860821834!GO:0009967;positive regulation of signal transduction;0.00267971127841205!GO:0006629;lipid metabolic process;0.00268898736121753!GO:0009260;ribonucleotide biosynthetic process;0.00268898736121753!GO:0001516;prostaglandin biosynthetic process;0.00268898736121753!GO:0046457;prostanoid biosynthetic process;0.00268898736121753!GO:0001666;response to hypoxia;0.00272683654322887!GO:0005762;mitochondrial large ribosomal subunit;0.00276331459549617!GO:0000315;organellar large ribosomal subunit;0.00276331459549617!GO:0003702;RNA polymerase II transcription factor activity;0.00285513814967967!GO:0005769;early endosome;0.00287106007247916!GO:0043492;ATPase activity, coupled to movement of substances;0.00304680623963056!GO:0045454;cell redox homeostasis;0.00308643195362114!GO:0006633;fatty acid biosynthetic process;0.00331854941080518!GO:0007266;Rho protein signal transduction;0.00331854941080518!GO:0030659;cytoplasmic vesicle membrane;0.00344846278162748!GO:0005643;nuclear pore;0.00349944955776728!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0035367688884046!GO:0043623;cellular protein complex assembly;0.00357518553183009!GO:0008250;oligosaccharyl transferase complex;0.00357518553183009!GO:0016853;isomerase activity;0.00357518553183009!GO:0051287;NAD binding;0.00358301678139415!GO:0043021;ribonucleoprotein binding;0.00358593415262967!GO:0006082;organic acid metabolic process;0.00358593415262967!GO:0005667;transcription factor complex;0.00369302113401291!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00400144251333749!GO:0019318;hexose metabolic process;0.00401595031997635!GO:0040008;regulation of growth;0.00419848569543387!GO:0045045;secretory pathway;0.0042656093551043!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00436383474978702!GO:0012506;vesicle membrane;0.00439135023061707!GO:0009101;glycoprotein biosynthetic process;0.00443848466025035!GO:0003724;RNA helicase activity;0.00450119353590227!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00450119353590227!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00450726276277665!GO:0004812;aminoacyl-tRNA ligase activity;0.00450726276277665!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00450726276277665!GO:0007049;cell cycle;0.00461306207884844!GO:0005975;carbohydrate metabolic process;0.0046133649513236!GO:0030658;transport vesicle membrane;0.00479600727424274!GO:0003676;nucleic acid binding;0.00493618939332858!GO:0000074;regulation of progression through cell cycle;0.00498381406661964!GO:0009108;coenzyme biosynthetic process;0.00498663725455787!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00498663725455787!GO:0019752;carboxylic acid metabolic process;0.00500641740742103!GO:0051726;regulation of cell cycle;0.00501476367051403!GO:0006891;intra-Golgi vesicle-mediated transport;0.00504247608000673!GO:0030041;actin filament polymerization;0.00504998685014511!GO:0016787;hydrolase activity;0.00506395388018115!GO:0046930;pore complex;0.00507443816522203!GO:0005912;adherens junction;0.0051389292002776!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0051389292002776!GO:0009893;positive regulation of metabolic process;0.00521928339114352!GO:0006333;chromatin assembly or disassembly;0.00524093818663946!GO:0017166;vinculin binding;0.00527913144303734!GO:0007005;mitochondrion organization and biogenesis;0.00546097879338814!GO:0004576;oligosaccharyl transferase activity;0.00551685656101449!GO:0008026;ATP-dependent helicase activity;0.00559997002674365!GO:0032940;secretion by cell;0.0059006160505036!GO:0016859;cis-trans isomerase activity;0.00592983644336247!GO:0051235;maintenance of localization;0.00601095164583571!GO:0006403;RNA localization;0.00630337231489281!GO:0044433;cytoplasmic vesicle part;0.00632597233849282!GO:0000902;cell morphogenesis;0.00645848773431007!GO:0032989;cellular structure morphogenesis;0.00645848773431007!GO:0006612;protein targeting to membrane;0.00660693061762225!GO:0006607;NLS-bearing substrate import into nucleus;0.00680382383588544!GO:0005996;monosaccharide metabolic process;0.00684616508304976!GO:0050657;nucleic acid transport;0.00684616508304976!GO:0051236;establishment of RNA localization;0.00684616508304976!GO:0050658;RNA transport;0.00684616508304976!GO:0006892;post-Golgi vesicle-mediated transport;0.00702679607260192!GO:0031589;cell-substrate adhesion;0.00710056831285598!GO:0060090;molecular adaptor activity;0.00732490656480916!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00764591605351036!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00764591605351036!GO:0065002;intracellular protein transport across a membrane;0.0078731268443546!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00796604707916699!GO:0045098;type III intermediate filament;0.00796604707916699!GO:0043038;amino acid activation;0.00796604707916699!GO:0006418;tRNA aminoacylation for protein translation;0.00796604707916699!GO:0043039;tRNA aminoacylation;0.00796604707916699!GO:0005099;Ras GTPase activator activity;0.0080235828942693!GO:0030119;AP-type membrane coat adaptor complex;0.00809938259319557!GO:0005100;Rho GTPase activator activity;0.00822182475263994!GO:0016791;phosphoric monoester hydrolase activity;0.00830416372936109!GO:0015629;actin cytoskeleton;0.0083527356919063!GO:0030127;COPII vesicle coat;0.00854711293003754!GO:0012507;ER to Golgi transport vesicle membrane;0.00854711293003754!GO:0043488;regulation of mRNA stability;0.00857769719684965!GO:0043487;regulation of RNA stability;0.00857769719684965!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00880665242407347!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00918646576708226!GO:0033043;regulation of organelle organization and biogenesis;0.00918646576708226!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0095727362835694!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00966478940817879!GO:0030134;ER to Golgi transport vesicle;0.00966478940817879!GO:0004386;helicase activity;0.00993576839502081!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00994430414176912!GO:0003690;double-stranded DNA binding;0.0102129956128358!GO:0030131;clathrin adaptor complex;0.01046101878251!GO:0006650;glycerophospholipid metabolic process;0.0106076864821278!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0107433835642461!GO:0045792;negative regulation of cell size;0.0115245382737275!GO:0016301;kinase activity;0.0115384177274519!GO:0043034;costamere;0.0122397456695893!GO:0008287;protein serine/threonine phosphatase complex;0.0122397456695893!GO:0031902;late endosome membrane;0.0127352030221907!GO:0003729;mRNA binding;0.0128294822966633!GO:0030308;negative regulation of cell growth;0.0128294822966633!GO:0006643;membrane lipid metabolic process;0.0132614329156811!GO:0006402;mRNA catabolic process;0.0134547637532086!GO:0051674;localization of cell;0.0136209988163934!GO:0006928;cell motility;0.0136209988163934!GO:0007160;cell-matrix adhesion;0.0136499212194242!GO:0006486;protein amino acid glycosylation;0.0140017405783025!GO:0065004;protein-DNA complex assembly;0.0140161511276354!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0143686264724122!GO:0030663;COPI coated vesicle membrane;0.0143686264724122!GO:0030126;COPI vesicle coat;0.0143686264724122!GO:0006118;electron transport;0.014414386553978!GO:0043413;biopolymer glycosylation;0.0144625957809507!GO:0030660;Golgi-associated vesicle membrane;0.0144625957809507!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0145429002475629!GO:0035035;histone acetyltransferase binding;0.0145429002475629!GO:0051270;regulation of cell motility;0.0149782430618783!GO:0006487;protein amino acid N-linked glycosylation;0.0149782430618783!GO:0046394;carboxylic acid biosynthetic process;0.0150191051537662!GO:0016053;organic acid biosynthetic process;0.0150191051537662!GO:0006401;RNA catabolic process;0.0151503458796252!GO:0051049;regulation of transport;0.0151647767029959!GO:0050662;coenzyme binding;0.0152083223950248!GO:0004364;glutathione transferase activity;0.0152604878398323!GO:0046983;protein dimerization activity;0.0152604878398323!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0156621401618464!GO:0043407;negative regulation of MAP kinase activity;0.0159763165896847!GO:0035258;steroid hormone receptor binding;0.0163320819601036!GO:0030132;clathrin coat of coated pit;0.0163654407160724!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0163654407160724!GO:0018196;peptidyl-asparagine modification;0.0166792476637137!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0166792476637137!GO:0046467;membrane lipid biosynthetic process;0.016712501033158!GO:0031349;positive regulation of defense response;0.01706664105906!GO:0050729;positive regulation of inflammatory response;0.01706664105906!GO:0030384;phosphoinositide metabolic process;0.0174962794576908!GO:0006509;membrane protein ectodomain proteolysis;0.0174962794576908!GO:0033619;membrane protein proteolysis;0.0174962794576908!GO:0030176;integral to endoplasmic reticulum membrane;0.0176078592213021!GO:0016311;dephosphorylation;0.0182230403543726!GO:0051017;actin filament bundle formation;0.0182506477509156!GO:0007015;actin filament organization;0.0182980896616701!GO:0045121;lipid raft;0.0187999856189593!GO:0008186;RNA-dependent ATPase activity;0.0190149200163659!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0194754755361916!GO:0006414;translational elongation;0.0197397468793822!GO:0030832;regulation of actin filament length;0.0200888871464899!GO:0042254;ribosome biogenesis and assembly;0.0201478380541429!GO:0048487;beta-tubulin binding;0.0204119087509061!GO:0031325;positive regulation of cellular metabolic process;0.0209195315117768!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0209399406370673!GO:0006752;group transfer coenzyme metabolic process;0.0213400240764565!GO:0006635;fatty acid beta-oxidation;0.0216767284676965!GO:0001725;stress fiber;0.0219502626021814!GO:0032432;actin filament bundle;0.0219502626021814!GO:0044420;extracellular matrix part;0.0220520907831662!GO:0032535;regulation of cellular component size;0.0223002647400555!GO:0016584;nucleosome positioning;0.0223002647400555!GO:0048500;signal recognition particle;0.0223002647400555!GO:0031301;integral to organelle membrane;0.0223002647400555!GO:0051168;nuclear export;0.0223002647400555!GO:0032594;protein transport within lipid bilayer;0.0223002647400555!GO:0032907;transforming growth factor-beta3 production;0.0223002647400555!GO:0032596;protein transport into lipid raft;0.0223002647400555!GO:0032910;regulation of transforming growth factor-beta3 production;0.0223002647400555!GO:0032595;B cell receptor transport within lipid bilayer;0.0223002647400555!GO:0033606;chemokine receptor transport within lipid bilayer;0.0223002647400555!GO:0032600;chemokine receptor transport out of lipid raft;0.0223002647400555!GO:0032599;protein transport out of lipid raft;0.0223002647400555!GO:0032597;B cell receptor transport into lipid raft;0.0223002647400555!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0223002647400555!GO:0051056;regulation of small GTPase mediated signal transduction;0.0224598679862312!GO:0008139;nuclear localization sequence binding;0.0229453755587062!GO:0008629;induction of apoptosis by intracellular signals;0.0232760400690335!GO:0046822;regulation of nucleocytoplasmic transport;0.0234685002961856!GO:0051276;chromosome organization and biogenesis;0.0244691496293883!GO:0050811;GABA receptor binding;0.0245090417806039!GO:0051087;chaperone binding;0.0245329816138323!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0246312112083226!GO:0008283;cell proliferation;0.0246312112083226!GO:0003756;protein disulfide isomerase activity;0.0248455386904349!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0248455386904349!GO:0005869;dynactin complex;0.0249578180030213!GO:0009117;nucleotide metabolic process;0.0251400077446018!GO:0030137;COPI-coated vesicle;0.0254009749191517!GO:0043681;protein import into mitochondrion;0.0256051988068952!GO:0005774;vacuolar membrane;0.0259501784381618!GO:0051252;regulation of RNA metabolic process;0.0267286074328697!GO:0001944;vasculature development;0.0277753712424479!GO:0005862;muscle thin filament tropomyosin;0.0278553046078018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0299255169939149!GO:0015002;heme-copper terminal oxidase activity;0.0299255169939149!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0299255169939149!GO:0004129;cytochrome-c oxidase activity;0.0299255169939149!GO:0030031;cell projection biogenesis;0.0303187319098445!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0303704430914628!GO:0006066;alcohol metabolic process;0.0305384920244954!GO:0001568;blood vessel development;0.0306997459759112!GO:0031901;early endosome membrane;0.0306999613951199!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0307081731569671!GO:0051028;mRNA transport;0.0308831581407966!GO:0000314;organellar small ribosomal subunit;0.031410718378101!GO:0005763;mitochondrial small ribosomal subunit;0.031410718378101!GO:0004674;protein serine/threonine kinase activity;0.0318293634388754!GO:0050790;regulation of catalytic activity;0.0318293634388754!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0322636566441871!GO:0005070;SH3/SH2 adaptor activity;0.0323664752226728!GO:0008147;structural constituent of bone;0.0327621331931745!GO:0000785;chromatin;0.0327970277443642!GO:0032787;monocarboxylic acid metabolic process;0.0332800855272139!GO:0030518;steroid hormone receptor signaling pathway;0.0335311109730815!GO:0004177;aminopeptidase activity;0.0343297017144905!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0343297017144905!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0343297017144905!GO:0016126;sterol biosynthetic process;0.0347443269278424!GO:0004721;phosphoprotein phosphatase activity;0.034831896245977!GO:0005938;cell cortex;0.034831896245977!GO:0030241;muscle thick filament assembly;0.034831896245977!GO:0031034;myosin filament assembly;0.034831896245977!GO:0031033;myosin filament assembly or disassembly;0.034831896245977!GO:0048739;cardiac muscle fiber development;0.034831896245977!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0353177414313557!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0357856613367071!GO:0016363;nuclear matrix;0.0358164235277834!GO:0006006;glucose metabolic process;0.0358164235277834!GO:0017091;AU-rich element binding;0.0358164235277834!GO:0050779;RNA destabilization;0.0358164235277834!GO:0000289;poly(A) tail shortening;0.0358164235277834!GO:0004722;protein serine/threonine phosphatase activity;0.036218104608715!GO:0006631;fatty acid metabolic process;0.0362369826335358!GO:0018193;peptidyl-amino acid modification;0.0363194472629406!GO:0006644;phospholipid metabolic process;0.0363194472629406!GO:0031529;ruffle organization and biogenesis;0.0363674049069035!GO:0046578;regulation of Ras protein signal transduction;0.0367920023591034!GO:0004860;protein kinase inhibitor activity;0.0371729183567692!GO:0006749;glutathione metabolic process;0.0372211346115742!GO:0048659;smooth muscle cell proliferation;0.0374543638431284!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.038472816383992!GO:0030100;regulation of endocytosis;0.0386603391162099!GO:0043284;biopolymer biosynthetic process;0.0387541899304519!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.040111733960516!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0404859743874298!GO:0045047;protein targeting to ER;0.0404859743874298!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0409105989846904!GO:0004784;superoxide dismutase activity;0.0409105989846904!GO:0031072;heat shock protein binding;0.0410434600867719!GO:0004004;ATP-dependent RNA helicase activity;0.0422441667812534!GO:0040011;locomotion;0.0424914773159272!GO:0051248;negative regulation of protein metabolic process;0.0440078401446676!GO:0046474;glycerophospholipid biosynthetic process;0.0440567626144001!GO:0043086;negative regulation of catalytic activity;0.0452077826620199!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0452105710898481!GO:0019838;growth factor binding;0.0454782632766072!GO:0005159;insulin-like growth factor receptor binding;0.0457051046609205!GO:0051271;negative regulation of cell motility;0.0463379916073028!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0464812271223033!GO:0006672;ceramide metabolic process;0.0465001956927981!GO:0005925;focal adhesion;0.0472183483409842!GO:0003746;translation elongation factor activity;0.0473626974348657!GO:0045926;negative regulation of growth;0.0480964319730106!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0481936400518108!GO:0004667;prostaglandin-D synthase activity;0.0481936400518108!GO:0050802;circadian sleep/wake cycle, sleep;0.0481936400518108!GO:0022410;circadian sleep/wake cycle process;0.0481936400518108!GO:0042749;regulation of circadian sleep/wake cycle;0.0481936400518108!GO:0006595;polyamine metabolic process;0.0489557829417347!GO:0040012;regulation of locomotion;0.0489557829417347!GO:0022415;viral reproductive process;0.0489916737955615!GO:0051059;NF-kappaB binding;0.0499962217758937 | |||
|sample_id=10198 | |sample_id=10198 | ||
|sample_note= | |sample_note= | ||
|sample_sex= | |sample_sex=M | ||
|sample_species=Human (Homo sapiens) | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=HNF1A:3.09934509037;SPZ1:2.69471338038;EP300:2.63179613705;TFCP2:2.55665080425;SRF:2.37650844482;TFAP2{A,C}:2.34599451288;HNF4A_NR2F1,2:2.23535080575;MTF1:2.13128366379;HMX1:2.06717548304;MAZ:1.95582372794;SP1:1.90680104131;SNAI1..3:1.84089733739;FOX{F1,F2,J1}:1.8238660566;PATZ1:1.68424121193;TFAP4:1.67661708672;MYBL2:1.67052929326;AR:1.64474933524;MTE{core}:1.6259532767;HIC1:1.62450317208;TLX1..3_NFIC{dimer}:1.62322311722;TFAP2B:1.61308084105;ZEB1:1.59078186082;XCPE1{core}:1.58185287188;RXRA_VDR{dimer}:1.56036091239;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55789696057;MYFfamily:1.55000677938;ZNF423:1.48477595143;ATF6:1.46181179092;TBX4,5:1.44953490467;FOX{D1,D2}:1.39673008917;ESR1:1.38174250498;ESRRA:1.37469138318;IKZF1:1.35349865608;GATA6:1.33846904524;LMO2:1.33495468357;GTF2I:1.31602848287;RBPJ:1.29998221884;T:1.2624836712;TBP:1.25862671691;NR1H4:1.2328732606;ZNF148:1.22609447249;RREB1:1.22281167575;EGR1..3:1.20303732358;GLI1..3:1.14103156116;SMAD1..7,9:1.13483543761;MZF1:1.12671996939;MED-1{core}:1.0912499627;EBF1:1.07240792725;TEAD1:1.06071124708;HOX{A6,A7,B6,B7}:1.05433728194;MYOD1:1.04555520342;ZIC1..3:1.03897428915;HES1:0.93331079527;ZNF238:0.864571387727;FOXO1,3,4:0.860807052886;PRDM1:0.812180441809;NFATC1..3:0.782289172084;GTF2A1,2:0.756716527019;MEF2{A,B,C,D}:0.647128045355;PAX5:0.589698574602;RXR{A,B,G}:0.589047955572;NHLH1,2:0.550501438662;ETS1,2:0.541023678131;PAX1,9:0.540201901737;NR5A1,2:0.515548646416;SOX5:0.50772769993;ZBTB6:0.50079834388;GCM1,2:0.485179124858;ADNP_IRX_SIX_ZHX:0.463377633587;JUN:0.457443070309;STAT2,4,6:0.4301090977;IRF7:0.42801698352;ATF4:0.408859327983;POU5F1:0.394698853993;GATA4:0.359729185565;BREu{core}:0.356763815294;TAL1_TCF{3,4,12}:0.354970053283;STAT1,3:0.346940486817;IKZF2:0.334392358958;ATF2:0.328529374247;POU2F1..3:0.327223526525;FOXL1:0.325136051483;FOXN1:0.313406277703;PAX6:0.293666010896;GFI1B:0.28727213689;REST:0.266145852049;NFIL3:0.253774591352;ZFP161:0.252069028184;DBP:0.219356702801;RFX2..5_RFXANK_RFXAP:0.213751881227;SPIB:0.205423951895;FOX{I1,J2}:0.193847100951;NKX3-2:0.190213868417;TLX2:0.173512544912;ONECUT1,2:0.158738650159;bHLH_family:0.156928077436;POU6F1:0.140773108919;IRF1,2:0.0968736661748;FOXA2:0.0742459096235;HAND1,2:0.0420290983121;SOX2:0.0368682508983;XBP1:0.0363741306905;NR6A1:0.00382693000245;TP53:0.000894124552805;FOXP1:-0.0150002184658;RFX1:-0.023717894819;MAFB:-0.0374058370285;KLF4:-0.0682208529064;SPI1:-0.0832465861851;CDC5L:-0.083472267311;BPTF:-0.102972044598;FOXM1:-0.119304867534;UFEwm:-0.125552181934;SREBF1,2:-0.135682342956;FOXD3:-0.161541946559;NANOG{mouse}:-0.167907341728;RUNX1..3:-0.172522781113;TGIF1:-0.174431889042;ATF5_CREB3:-0.223914937526;ZNF143:-0.239406366388;ELF1,2,4:-0.278164770107;PITX1..3:-0.317898079697;TOPORS:-0.324126435234;LHX3,4:-0.334173549374;ALX1:-0.337470210535;NR3C1:-0.343625992526;ARID5B:-0.347370626668;NFKB1_REL_RELA:-0.369657342982;NFIX:-0.374013373559;FOSL2:-0.380644017624;NFE2:-0.414912021783;NANOG:-0.419770574565;NFY{A,B,C}:-0.426111218873;NKX2-1,4:-0.439194692084;HBP1_HMGB_SSRP1_UBTF:-0.465619072338;ALX4:-0.471324098414;ZNF384:-0.474204658168;CUX2:-0.47912693984;CREB1:-0.486502914931;GFI1:-0.544090124196;TFDP1:-0.55438130003;CEBPA,B_DDIT3:-0.571720993222;CRX:-0.578686454429;BACH2:-0.581702605707;FOS_FOS{B,L1}_JUN{B,D}:-0.594607183642;GZF1:-0.617053352159;DMAP1_NCOR{1,2}_SMARC:-0.636828861251;NKX2-3_NKX2-5:-0.638467506639;NFE2L1:-0.646705750205;NKX3-1:-0.648293808341;PBX1:-0.750245452643;SOX17:-0.772969335099;SOX{8,9,10}:-0.785438919565;AHR_ARNT_ARNT2:-0.804960988162;HSF1,2:-0.850225462737;NRF1:-0.857073198812;NFE2L2:-0.861161181163;LEF1_TCF7_TCF7L1,2:-0.875180340187;HLF:-0.898888426321;RORA:-0.921630770521;PAX3,7:-0.938938228998;E2F1..5:-0.964754447659;NKX6-1,2:-0.965180932718;PRRX1,2:-0.976472836376;ELK1,4_GABP{A,B1}:-0.996029415105;PAX2:-0.996700539703;HMGA1,2:-1.01411604992;HOX{A5,B5}:-1.01434022843;VSX1,2:-1.0677777859;EVI1:-1.07217930247;FOXQ1:-1.1288998456;TEF:-1.13579366563;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.14430736496;FOXP3:-1.21596913742;HOX{A4,D4}:-1.2450866155;NKX2-2,8:-1.28837922518;HIF1A:-1.31945761039;OCT4_SOX2{dimer}:-1.33366022174;HOXA9_MEIS1:-1.34093481337;POU1F1:-1.37730317708;POU3F1..4:-1.38158803275;YY1:-1.43400123583;AIRE:-1.45875963571;PPARG:-1.50438422061;CDX1,2,4:-1.5353904889;MYB:-1.6814869358;ZBTB16:-1.73831012883;STAT5{A,B}:-1.92898436227;EN1,2:-2.02630631865;PDX1:-2.24684895173;PAX8:-2.43230066351;PAX4:-2.96976655269 | |top_motifs=HNF1A:3.09934509037;SPZ1:2.69471338038;EP300:2.63179613705;TFCP2:2.55665080425;SRF:2.37650844482;TFAP2{A,C}:2.34599451288;HNF4A_NR2F1,2:2.23535080575;MTF1:2.13128366379;HMX1:2.06717548304;MAZ:1.95582372794;SP1:1.90680104131;SNAI1..3:1.84089733739;FOX{F1,F2,J1}:1.8238660566;PATZ1:1.68424121193;TFAP4:1.67661708672;MYBL2:1.67052929326;AR:1.64474933524;MTE{core}:1.6259532767;HIC1:1.62450317208;TLX1..3_NFIC{dimer}:1.62322311722;TFAP2B:1.61308084105;ZEB1:1.59078186082;XCPE1{core}:1.58185287188;RXRA_VDR{dimer}:1.56036091239;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.55789696057;MYFfamily:1.55000677938;ZNF423:1.48477595143;ATF6:1.46181179092;TBX4,5:1.44953490467;FOX{D1,D2}:1.39673008917;ESR1:1.38174250498;ESRRA:1.37469138318;IKZF1:1.35349865608;GATA6:1.33846904524;LMO2:1.33495468357;GTF2I:1.31602848287;RBPJ:1.29998221884;T:1.2624836712;TBP:1.25862671691;NR1H4:1.2328732606;ZNF148:1.22609447249;RREB1:1.22281167575;EGR1..3:1.20303732358;GLI1..3:1.14103156116;SMAD1..7,9:1.13483543761;MZF1:1.12671996939;MED-1{core}:1.0912499627;EBF1:1.07240792725;TEAD1:1.06071124708;HOX{A6,A7,B6,B7}:1.05433728194;MYOD1:1.04555520342;ZIC1..3:1.03897428915;HES1:0.93331079527;ZNF238:0.864571387727;FOXO1,3,4:0.860807052886;PRDM1:0.812180441809;NFATC1..3:0.782289172084;GTF2A1,2:0.756716527019;MEF2{A,B,C,D}:0.647128045355;PAX5:0.589698574602;RXR{A,B,G}:0.589047955572;NHLH1,2:0.550501438662;ETS1,2:0.541023678131;PAX1,9:0.540201901737;NR5A1,2:0.515548646416;SOX5:0.50772769993;ZBTB6:0.50079834388;GCM1,2:0.485179124858;ADNP_IRX_SIX_ZHX:0.463377633587;JUN:0.457443070309;STAT2,4,6:0.4301090977;IRF7:0.42801698352;ATF4:0.408859327983;POU5F1:0.394698853993;GATA4:0.359729185565;BREu{core}:0.356763815294;TAL1_TCF{3,4,12}:0.354970053283;STAT1,3:0.346940486817;IKZF2:0.334392358958;ATF2:0.328529374247;POU2F1..3:0.327223526525;FOXL1:0.325136051483;FOXN1:0.313406277703;PAX6:0.293666010896;GFI1B:0.28727213689;REST:0.266145852049;NFIL3:0.253774591352;ZFP161:0.252069028184;DBP:0.219356702801;RFX2..5_RFXANK_RFXAP:0.213751881227;SPIB:0.205423951895;FOX{I1,J2}:0.193847100951;NKX3-2:0.190213868417;TLX2:0.173512544912;ONECUT1,2:0.158738650159;bHLH_family:0.156928077436;POU6F1:0.140773108919;IRF1,2:0.0968736661748;FOXA2:0.0742459096235;HAND1,2:0.0420290983121;SOX2:0.0368682508983;XBP1:0.0363741306905;NR6A1:0.00382693000245;TP53:0.000894124552805;FOXP1:-0.0150002184658;RFX1:-0.023717894819;MAFB:-0.0374058370285;KLF4:-0.0682208529064;SPI1:-0.0832465861851;CDC5L:-0.083472267311;BPTF:-0.102972044598;FOXM1:-0.119304867534;UFEwm:-0.125552181934;SREBF1,2:-0.135682342956;FOXD3:-0.161541946559;NANOG{mouse}:-0.167907341728;RUNX1..3:-0.172522781113;TGIF1:-0.174431889042;ATF5_CREB3:-0.223914937526;ZNF143:-0.239406366388;ELF1,2,4:-0.278164770107;PITX1..3:-0.317898079697;TOPORS:-0.324126435234;LHX3,4:-0.334173549374;ALX1:-0.337470210535;NR3C1:-0.343625992526;ARID5B:-0.347370626668;NFKB1_REL_RELA:-0.369657342982;NFIX:-0.374013373559;FOSL2:-0.380644017624;NFE2:-0.414912021783;NANOG:-0.419770574565;NFY{A,B,C}:-0.426111218873;NKX2-1,4:-0.439194692084;HBP1_HMGB_SSRP1_UBTF:-0.465619072338;ALX4:-0.471324098414;ZNF384:-0.474204658168;CUX2:-0.47912693984;CREB1:-0.486502914931;GFI1:-0.544090124196;TFDP1:-0.55438130003;CEBPA,B_DDIT3:-0.571720993222;CRX:-0.578686454429;BACH2:-0.581702605707;FOS_FOS{B,L1}_JUN{B,D}:-0.594607183642;GZF1:-0.617053352159;DMAP1_NCOR{1,2}_SMARC:-0.636828861251;NKX2-3_NKX2-5:-0.638467506639;NFE2L1:-0.646705750205;NKX3-1:-0.648293808341;PBX1:-0.750245452643;SOX17:-0.772969335099;SOX{8,9,10}:-0.785438919565;AHR_ARNT_ARNT2:-0.804960988162;HSF1,2:-0.850225462737;NRF1:-0.857073198812;NFE2L2:-0.861161181163;LEF1_TCF7_TCF7L1,2:-0.875180340187;HLF:-0.898888426321;RORA:-0.921630770521;PAX3,7:-0.938938228998;E2F1..5:-0.964754447659;NKX6-1,2:-0.965180932718;PRRX1,2:-0.976472836376;ELK1,4_GABP{A,B1}:-0.996029415105;PAX2:-0.996700539703;HMGA1,2:-1.01411604992;HOX{A5,B5}:-1.01434022843;VSX1,2:-1.0677777859;EVI1:-1.07217930247;FOXQ1:-1.1288998456;TEF:-1.13579366563;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.14430736496;FOXP3:-1.21596913742;HOX{A4,D4}:-1.2450866155;NKX2-2,8:-1.28837922518;HIF1A:-1.31945761039;OCT4_SOX2{dimer}:-1.33366022174;HOXA9_MEIS1:-1.34093481337;POU1F1:-1.37730317708;POU3F1..4:-1.38158803275;YY1:-1.43400123583;AIRE:-1.45875963571;PPARG:-1.50438422061;CDX1,2,4:-1.5353904889;MYB:-1.6814869358;ZBTB16:-1.73831012883;STAT5{A,B}:-1.92898436227;EN1,2:-2.02630631865;PDX1:-2.24684895173;PAX8:-2.43230066351;PAX4:-2.96976655269 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10198-103E9;search_select_hide=table117:FF:10198-103E9 | |||
}} | }} | ||
Latest revision as of 13:55, 3 June 2020
| Name: | gall bladder, adult |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12848 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12848
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12848
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.045 |
| 10 | 10 | 0.0466 |
| 100 | 100 | 0.178 |
| 101 | 101 | 0.205 |
| 102 | 102 | 0.325 |
| 103 | 103 | 0.136 |
| 104 | 104 | 0.955 |
| 105 | 105 | 0.674 |
| 106 | 106 | 0.566 |
| 107 | 107 | 0.118 |
| 108 | 108 | 0.872 |
| 109 | 109 | 0.41 |
| 11 | 11 | 0.27 |
| 110 | 110 | 0.215 |
| 111 | 111 | 0.0175 |
| 112 | 112 | 0.76 |
| 113 | 113 | 0.831 |
| 114 | 114 | 0.126 |
| 115 | 115 | 0.554 |
| 116 | 116 | 0.737 |
| 117 | 117 | 0.0319 |
| 118 | 118 | 0.131 |
| 119 | 119 | 0.921 |
| 12 | 12 | 0.817 |
| 120 | 120 | 0.0778 |
| 121 | 121 | 0.83 |
| 122 | 122 | 0.808 |
| 123 | 123 | 0.0794 |
| 124 | 124 | 0.171 |
| 125 | 125 | 0.0166 |
| 126 | 126 | 0.967 |
| 127 | 127 | 0.275 |
| 128 | 128 | 0.192 |
| 129 | 129 | 0.29 |
| 13 | 13 | 0.0411 |
| 130 | 130 | 0.898 |
| 131 | 131 | 0.317 |
| 132 | 132 | 0.0443 |
| 133 | 133 | 0.0618 |
| 134 | 134 | 0.044 |
| 135 | 135 | 0.399 |
| 136 | 136 | 0.829 |
| 137 | 137 | 0.487 |
| 138 | 138 | 0.948 |
| 139 | 139 | 0.244 |
| 14 | 14 | 0.946 |
| 140 | 140 | 0.202 |
| 141 | 141 | 0.169 |
| 142 | 142 | 0.715 |
| 143 | 143 | 0.0291 |
| 144 | 144 | 0.853 |
| 145 | 145 | 0.508 |
| 146 | 146 | 0.94 |
| 147 | 147 | 0.763 |
| 148 | 148 | 0.427 |
| 149 | 149 | 0.187 |
| 15 | 15 | 0.119 |
| 150 | 150 | 0.777 |
| 151 | 151 | 0.369 |
| 152 | 152 | 0.0487 |
| 153 | 153 | 0.555 |
| 154 | 154 | 0.552 |
| 155 | 155 | 0.761 |
| 156 | 156 | 0.75 |
| 157 | 157 | 0.727 |
| 158 | 158 | 0.44 |
| 159 | 159 | 0.443 |
| 16 | 16 | 0.367 |
| 160 | 160 | 0.833 |
| 161 | 161 | 0.276 |
| 162 | 162 | 0.915 |
| 163 | 163 | 0.703 |
| 164 | 164 | 0.1 |
| 165 | 165 | 0.92 |
| 166 | 166 | 0.39 |
| 167 | 167 | 0.032 |
| 168 | 168 | 0.405 |
| 169 | 169 | 0.339 |
| 17 | 17 | 0.944 |
| 18 | 18 | 0.0136 |
| 19 | 19 | 0.387 |
| 2 | 2 | 0.021 |
| 20 | 20 | 0.0774 |
| 21 | 21 | 0.214 |
| 22 | 22 | 0.643 |
| 23 | 23 | 0.402 |
| 24 | 24 | 0.43 |
| 25 | 25 | 0.367 |
| 26 | 26 | 0.544 |
| 27 | 27 | 0.574 |
| 28 | 28 | 0.588 |
| 29 | 29 | 0.0315 |
| 3 | 3 | 0.112 |
| 30 | 30 | 0.0258 |
| 31 | 31 | 0.881 |
| 32 | 32 | 0.344 |
| 33 | 33 | 0.422 |
| 34 | 34 | 0.264 |
| 35 | 35 | 0.398 |
| 36 | 36 | 0.0237 |
| 37 | 37 | 0.481 |
| 38 | 38 | 0.987 |
| 39 | 39 | 0.385 |
| 4 | 4 | 0.348 |
| 40 | 40 | 0.163 |
| 41 | 41 | 0.036 |
| 42 | 42 | 0.153 |
| 43 | 43 | 0.349 |
| 44 | 44 | 0.984 |
| 45 | 45 | 0.199 |
| 46 | 46 | 0.194 |
| 47 | 47 | 0.171 |
| 48 | 48 | 0.28 |
| 49 | 49 | 0.094 |
| 5 | 5 | 0.263 |
| 50 | 50 | 0.47 |
| 51 | 51 | 0.849 |
| 52 | 52 | 0.149 |
| 53 | 53 | 0.831 |
| 54 | 54 | 0.951 |
| 55 | 55 | 0.678 |
| 56 | 56 | 0.694 |
| 57 | 57 | 0.0636 |
| 58 | 58 | 0.733 |
| 59 | 59 | 0.589 |
| 6 | 6 | 0.473 |
| 60 | 60 | 0.48 |
| 61 | 61 | 0.866 |
| 62 | 62 | 0.456 |
| 63 | 63 | 0.97 |
| 64 | 64 | 0.464 |
| 65 | 65 | 0.677 |
| 66 | 66 | 0.00977 |
| 67 | 67 | 0.276 |
| 68 | 68 | 0.412 |
| 69 | 69 | 0.816 |
| 7 | 7 | 0.515 |
| 70 | 70 | 0.138 |
| 71 | 71 | 0.0279 |
| 72 | 72 | 0.855 |
| 73 | 73 | 0.961 |
| 74 | 74 | 0.611 |
| 75 | 75 | 0.0147 |
| 76 | 76 | 0.0149 |
| 77 | 77 | 0.0407 |
| 78 | 78 | 0.631 |
| 79 | 79 | 0.725 |
| 8 | 8 | 0.385 |
| 80 | 80 | 0.311 |
| 81 | 81 | 0.194 |
| 82 | 82 | 0.853 |
| 83 | 83 | 0.942 |
| 84 | 84 | 0.994 |
| 85 | 85 | 0.396 |
| 86 | 86 | 0.787 |
| 87 | 87 | 0.844 |
| 88 | 88 | 0.991 |
| 89 | 89 | 0.463 |
| 9 | 9 | 0.387 |
| 90 | 90 | 0.0118 |
| 91 | 91 | 0.92 |
| 92 | 92 | 0.895 |
| 93 | 93 | 0.0763 |
| 94 | 94 | 0.00482 |
| 95 | 95 | 0.15 |
| 96 | 96 | 0.204 |
| 97 | 97 | 0.872 |
| 98 | 98 | 0.108 |
| 99 | 99 | 0.125 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12848
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002110 (gallbladder)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010198 (human gall bladder - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0006242 (gall bladder primordium)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)
